Locus 106

Sequence ID X_DroMel_CAF1
Location 433,294 – 433,394
Length 100
Max. P 0.991194
window140

overview

Window 0

Location 433,294 – 433,394
Length 100
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 87.10
Mean single sequence MFE -27.37
Consensus MFE -20.95
Energy contribution -21.71
Covariance contribution 0.76
Combinations/Pair 1.04
Mean z-score -2.98
Structure conservation index 0.77
SVM decision value 2.25
SVM RNA-class probability 0.991194
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 433294 100 + 22224390
CCUACGCGUACUAAUCCCUAUACGAUCGUGCAUAUGCGCU------UGUGUAUAUGUCGAACUUUCUCUCUCUGUAAGCCACA----------CACACUCACCAGAGAAGGGAAUA
..............(((((......(((.(((((((((..------..))))))))))))........((((((.........----------.........)))))))))))... ( -24.97)
>DroSec_CAF1 35875 103 + 1
CCUACGCGUACUAAUCCCUAUACGAUCGUGCAUAUGCGCUU---CUUGUGCAUAUGUCAAACUUUCUCUCUCUGCAAGCCACA----------CACACUCACCAGAGAAGGGAACA
..............(((((....((..((((((((((((..---...))))))))))...))..))..((((((..((.....----------....))...)))))))))))... ( -27.70)
>DroSim_CAF1 14761 103 + 1
CCUACGCGUACUAAUCCCUAUACGAUCGUGCAUAUGCGCUU---CUUGUGCAUAUGUCAAACUUUCUCUCUCUGUAAGCCACA----------CACACUCACCAGAGAAGGGAACA
..............(((((....((..((((((((((((..---...))))))))))...))..))..((((((.........----------.........)))))))))))... ( -27.77)
>DroEre_CAF1 38821 101 + 1
CCUACGCGUACUAAUCCCUAUACGAUCGUGCAUAUGC------GCUUGUGUAUAUGUCGAACUUUCUCUCUGUGUGAGCCACA------CACACACACUCACCAGAGAAGGAA---
(((...((((..........)))).(((.((((((((------(....))))))))))))......((((((.(((((.....------........))))))))))))))..--- ( -28.92)
>DroYak_CAF1 32802 113 + 1
CCUACGCGUACUAAUCCCUAUACGAUCGUGCAUAUGCGCAUACGCUUGUGCAUAUGUCGAACUUUCUCUCUCUGUAAGCCACACAUACACACACACACUCACCAGAGAAGGAA---
......((((..........)))).(((.(((((((((((......))))))))))))))...(((..((((((............................))))))..)))--- ( -27.49)
>consensus
CCUACGCGUACUAAUCCCUAUACGAUCGUGCAUAUGCGCUU___CUUGUGCAUAUGUCGAACUUUCUCUCUCUGUAAGCCACA__________CACACUCACCAGAGAAGGGAA_A
..............(((((....((..((((((((((((........))))))))))...))..))..((((((............................)))))))))))... (-20.95 = -21.71 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:28 2006