| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,094,119 – 3,094,218 |
| Length | 99 |
| Max. P | 0.678477 |
| Location | 3,094,119 – 3,094,218 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 79.55 |
| Mean single sequence MFE | -26.40 |
| Consensus MFE | -16.44 |
| Energy contribution | -17.00 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.678477 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3094119 99 + 22224390 ACAGUGCAGAGGGAAAUUUCUUGCUUGCAUUGCA----GCUGUCUGUCAGUAUUUUGCGAAUUUAUUUGUCCAAAUGGCAAAU------GGCAAAAAUUACUUCGGCAA .((((((((.((((....))))..))))))))..----((((...((.(((.((((((.....((((((((.....)))))))------))))))))))))..)))).. ( -26.40) >DroSec_CAF1 56107 95 + 1 ACACUACAGAGGGAAACUUCUGGCUUGCAAUGCA----GCUGUCUGUCAGUAUUUUGCGAAUUUGUUUG--------GCAAAUUACGUCGGCAAUAAUU--UUCGCAAA ......((((((....))))))((.......)).----((((.....))))..((((((((.(((((.(--------((.......)))))))).....--)))))))) ( -27.10) >DroSim_CAF1 51967 99 + 1 ACACUACAGAGGGAAAUUUCUGGCUUGCAAUGCAUAUGACUGCCUGUCAGUAUUUUGCGAAUUUGUUUG--------GCAAAUUACGUCGGCAAUCAUU--UUCGCAAA ......((((((....))))))........(((..((((.((((.(...(((.(((((.((.....)).--------))))).)))..))))).)))).--...))).. ( -25.70) >consensus ACACUACAGAGGGAAAUUUCUGGCUUGCAAUGCA____GCUGUCUGUCAGUAUUUUGCGAAUUUGUUUG________GCAAAUUACGUCGGCAAUAAUU__UUCGCAAA ......((((((....))))))..((((..((((....((((.....))))....))))(((((((...........)))))))......))))............... (-16.44 = -17.00 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:35 2006