| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,073,267 – 3,073,362 |
| Length | 95 |
| Max. P | 0.500000 |
| Location | 3,073,267 – 3,073,362 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 81.59 |
| Mean single sequence MFE | -20.57 |
| Consensus MFE | -12.63 |
| Energy contribution | -13.18 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.61 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3073267 95 - 22224390 GCACUCGAAUGUCA-ACAUUUAAUUGCAUACACGUAACAAGUUGAAAUUGAAAAUUAAUGACAGCUUUUCCGACCGCAAAAUUGGCAUUCGAUUCA------------ ....((((((((((-(.......((((......)))).((((((..(((((...)))))..))))))..............)))))))))))....------------ ( -20.10) >DroPse_CAF1 52998 103 - 1 ----GCGAAGGUCAGGCAUUUAAUUGCAG-UGCGUAACAAGUAGAAAUUGAAAAUUAAUGACAGUUUGUUUGACCGCAGAAUUGACAUUCGAUGCGAUUCGGUGGCCA ----.....(((((.(((......)))..-((((.((((((..(..(((((...)))))..)..))))))....))))((((((.(((...)))))))))..))))). ( -23.50) >DroSec_CAF1 44674 95 - 1 GCACUCGAAUGUCA-ACAUUUAAUUGCAUACACGUAACAAGUUGAAAUUGAAAAUUAAUGACAGCCUUUCCGACCGCAAAAUUGACAUUCGAUUCA------------ ....((((((((((-(.......((((......))))...((((..(((((...)))))..))))................)))))))))))....------------ ( -18.80) >DroEre_CAF1 45591 95 - 1 GCACUCGAAUGUCA-ACAUUUAAUUGCAUCCACGUAACAAGUUGAAAUUAAAAAUUAAUGACAGUUUUUCCGACCGCAAAAUUGACAUUCGAUUCA------------ ....((((((((((-(.......((((.((.((.......)).))....(((((((......)))))))......))))..)))))))))))....------------ ( -17.30) >DroYak_CAF1 46846 95 - 1 GCACUCGAAUGUCA-ACAUUUAAUUGCAUCCACGUAACAAGUUGAAAUUGAAAAUUAAUGACAGCUUUUCCGACCGCAAAAUUGACAUUCGAUUCA------------ ....((((((((((-(.......((((......)))).((((((..(((((...)))))..))))))..............)))))))))))....------------ ( -20.70) >DroPer_CAF1 54026 103 - 1 ----GCGAAGGUCAGGCAUUUAAUUGCAG-UGCGUAACAAUUAGAAAUUGAAAAUUAAUGACAGUUUGUUUGACUGCAAAAUUGACAUUCGAUGCGAUUCGGUGGCCA ----((....))..(((((..((((((.(-(.....))........((((((..(((((..(((((.....)))))....)))))..))))))))))))..)).))). ( -23.00) >consensus GCACUCGAAUGUCA_ACAUUUAAUUGCAU_CACGUAACAAGUUGAAAUUGAAAAUUAAUGACAGCUUUUCCGACCGCAAAAUUGACAUUCGAUUCA____________ .....(((((((((.........((((......)))).((((((..(((((...)))))..))))))...............)))))))))................. (-12.63 = -13.18 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:32 2006