| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,072,739 – 3,072,898 |
| Length | 159 |
| Max. P | 0.905466 |
| Location | 3,072,739 – 3,072,858 |
|---|---|
| Length | 119 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.47 |
| Mean single sequence MFE | -20.11 |
| Consensus MFE | -16.59 |
| Energy contribution | -16.90 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.24 |
| Structure conservation index | 0.82 |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.905466 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3072739 119 + 22224390 AUUUGGGUCUCCGCAUUAAAUUCGCCGGAGAGCAAAGGAAAACCUCAAAUAACCUUAACCCUU-UUACCCACUUUCUUCACCAUUGCCCCCAAUAAUCAGCUACAUUACUGAUUACAAUC ..((((((((((((.........).))))))((((.((.........................-................)).)))).)))))(((((((........)))))))..... ( -22.38) >DroSec_CAF1 44109 119 + 1 AUUUGGGUCUCCGCAUUAAAUUCGCCGGAGAGCAAAGGAAAACCUCAAAUAACCUUAACCCUU-UUACCCACUUGCUUAACCAUUGCCCCUAAUAAUCAGCUACAUUACUGAUUACAAUC ....((((((((((.........).))))))((((.((.........................-................)).)))))))...(((((((........)))))))..... ( -20.28) >DroEre_CAF1 45060 119 + 1 AUUUGGG-CUCCGCAUUAAAUUCGCUGGAGAGCAAAGGAAAAUCUAAAAUAAACUUAACCCUUGAUACCCAAUUUCUUCACCAUUUACCCUAAUAAUCAGCUACAUUACUGAUUACCAUC ..(((((-((((((.........)).))))....((((.....................))))....))))).....................(((((((........)))))))..... ( -19.10) >DroYak_CAF1 46332 119 + 1 AUUUGGGUCUCCGCAUUAAAUUCGCUGGGGAGCAAAAGAAAACCUCAAAUAACCUUAACCCUU-UUACCCAUUUUCUUUACCAUUUCCCCUAAUAAUCAGCUACAUUACUGAUUACAAUC ....((((((((((.........)).)))))...((((((((.....................-.......))))))))........)))...(((((((........)))))))..... ( -18.69) >consensus AUUUGGGUCUCCGCAUUAAAUUCGCCGGAGAGCAAAGGAAAACCUCAAAUAACCUUAACCCUU_UUACCCACUUUCUUCACCAUUGCCCCUAAUAAUCAGCUACAUUACUGAUUACAAUC ...(((((((((((.........)).)))))...((((.....................))))....))))......................(((((((........)))))))..... (-16.59 = -16.90 + 0.31)
| Location | 3,072,779 – 3,072,898 |
|---|---|
| Length | 119 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.89 |
| Mean single sequence MFE | -18.01 |
| Consensus MFE | -16.35 |
| Energy contribution | -16.10 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.720076 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3072779 119 + 22224390 AACCUCAAAUAACCUUAACCCUU-UUACCCACUUUCUUCACCAUUGCCCCCAAUAAUCAGCUACAUUACUGAUUACAAUCUUAAUCAAAGGCGAGAUUUUAAGUGGAAGUUUCGGUAGUU .................(((...-....((((((..(((.((.(((.......(((((((........)))))))..........))).)).))).....)))))).......))).... ( -18.07) >DroSec_CAF1 44149 119 + 1 AACCUCAAAUAACCUUAACCCUU-UUACCCACUUGCUUAACCAUUGCCCCUAAUAAUCAGCUACAUUACUGAUUACAAUCUUAAUCAAAGGCGAGAUUUUAAGUGGAAGUUUCGGUAGUU .......................-(((((.((((((((((...(((((.....(((((((........)))))))..............)))))....))))))..))))...))))).. ( -18.31) >DroEre_CAF1 45099 120 + 1 AAUCUAAAAUAAACUUAACCCUUGAUACCCAAUUUCUUCACCAUUUACCCUAAUAAUCAGCUACAUUACUGAUUACCAUCGUAAUCAAAGGCGAGAUUUUAAGUAAAAGUUUCGGUAGUU ..........................................................((((((.....(((((((....)))))))....(((((((((.....))))))))))))))) ( -18.20) >DroYak_CAF1 46372 119 + 1 AACCUCAAAUAACCUUAACCCUU-UUACCCAUUUUCUUUACCAUUUCCCCUAAUAAUCAGCUACAUUACUGAUUACAAUCUUAAUCAAAGGCGAGAUUUUAAGUGAAAGUUUCGGUAGUU .......................-(((((.((((((((((..(((((.(((..(((((((........))))))).............))).)))))..)))).))))))...))))).. ( -17.46) >consensus AACCUCAAAUAACCUUAACCCUU_UUACCCACUUUCUUCACCAUUGCCCCUAAUAAUCAGCUACAUUACUGAUUACAAUCUUAAUCAAAGGCGAGAUUUUAAGUGAAAGUUUCGGUAGUU ..........................................................((((((.....((((((......))))))....(((((((((.....))))))))))))))) (-16.35 = -16.10 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:31 2006