Locus 1052

Sequence ID X_DroMel_CAF1
Location 3,064,113 – 3,064,217
Length 104
Max. P 0.756031
window1710

overview

Window 0

Location 3,064,113 – 3,064,217
Length 104
Sequences 4
Columns 104
Reading direction reverse
Mean pairwise identity 97.91
Mean single sequence MFE -26.62
Consensus MFE -25.89
Energy contribution -26.20
Covariance contribution 0.31
Combinations/Pair 1.03
Mean z-score -1.81
Structure conservation index 0.97
SVM decision value 0.49
SVM RNA-class probability 0.756031
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3064113 104 - 22224390
CAACAAUCGCACUUCAGUCGUCCAUGUGAAUGGAUUCGUUGCUCCAGUUAUUGGAAUGGCAAAAUGAAUUGAUUUAAUUUGUGGCCAAAGUGUCGCCCAUUAAA
.......(((((((..((((..((..(((((.(((((((((((((((...)))))...)))..))))))).)))))...))))))..))))).))......... ( -24.00)
>DroSec_CAF1 35719 103 - 1
CAACAAUCGCACUUCUGUCAUCCAUGUGAAUGGAUUCGUUGCUCCAGUUAUUG-AAUGGCAAAAUGAAUUGAUUUAAUUUGUGGCCAAAGUGUCGCCCAUUAAA
.......(((((((..(((((.....(((((.((((((((...(((.......-..)))...)))))))).)))))....)))))..))))).))......... ( -25.10)
>DroEre_CAF1 36478 103 - 1
CAACAAUCGCACUUCAGUCAUCCAUGUGAAUGGAUUCGUUGCUCCAGUUAUUG-AAUGGCAAAAUGAAUUGAUUUAAUUUGUGGCCGAAGUGUCGCCCAUUAAA
.......((((((((.(((((.....(((((.((((((((...(((.......-..)))...)))))))).)))))....))))).)))))).))......... ( -28.70)
>DroYak_CAF1 37330 103 - 1
CAACAAUCGCACUUCAGUCAUCCAUGUGAAUGGAUUCGUUGCUCCAGUUAUUG-AAUGGCAAAAUGAAUUGAUUUAAUUUGUGGCCGAAGUGUCGCCCAUUAAA
.......((((((((.(((((.....(((((.((((((((...(((.......-..)))...)))))))).)))))....))))).)))))).))......... ( -28.70)
>consensus
CAACAAUCGCACUUCAGUCAUCCAUGUGAAUGGAUUCGUUGCUCCAGUUAUUG_AAUGGCAAAAUGAAUUGAUUUAAUUUGUGGCCAAAGUGUCGCCCAUUAAA
.......((((((((.(((((.....(((((.((((((((...(((..........)))...)))))))).)))))....))))).)))))).))......... (-25.89 = -26.20 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:26 2006