Locus 1051

Sequence ID X_DroMel_CAF1
Location 3,063,271 – 3,063,383
Length 112
Max. P 0.586402
window1709

overview

Window 9

Location 3,063,271 – 3,063,383
Length 112
Sequences 4
Columns 113
Reading direction forward
Mean pairwise identity 93.93
Mean single sequence MFE -32.62
Consensus MFE -29.04
Energy contribution -29.29
Covariance contribution 0.25
Combinations/Pair 1.09
Mean z-score -1.47
Structure conservation index 0.89
SVM decision value 0.11
SVM RNA-class probability 0.586402
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3063271 112 + 22224390
GUCUAGCUUGCGAAAGUUUUUGAGCUCUGUUUUCCA-AACUUUAAAAUUGCUGUCAUCACAGCAGGAUAUUGGACAGCAGACCAAAAGCUGACGGCUGCGACACUCGAUAGCG
(((.(((((((....))..(((.(.((((((.((((-(.........(((((((....)))))))....))))).)))))))))))))))))).((((((.....)).)))). ( -36.22)
>DroSec_CAF1 34934 112 + 1
GUCUAGCUUGCGAAAGUUUUUGAGCUCUGUUUUCCA-AACUUUAAAAUUGCUGUCAUCACAGCAGGAUAUUGGACAGCAGACCAAAAGAUGACGGCUGCGACACUCGAUAGCG
(((..((((((....))....))))((((((.((((-(.........(((((((....)))))))....))))).)))))).........))).((((((.....)).)))). ( -32.62)
>DroEre_CAF1 35641 113 + 1
CUCUAGCUUGCGAAAGUUUUCGAGCUCUGUUUUCCAAAACUUUCAAAUUGCUGUCAUCACAGCAGGAUAUUGGGCAGCGGACCGAAAUCUGACGGCUGCGACACUCGAUAGCG
.........(((((((((((.(((.......))).)))))))))...(((((((....)))))))..(((((((..((((.(((........)))))))....))))))))). ( -34.10)
>DroYak_CAF1 36512 112 + 1
GUCUAGCUUGCGAAAGUUUUCGAGCUCUGUUUUCCA-AACUUUAAAAUUGCUGUCAUCACAGCAGGAUAUUGGGCAGCGUACCGAAAUCUGACGGCUGCGACACUUAAUAGCG
((((((((.((....))(((((.((.((((...(((-(.........(((((((....)))))))....)))))))).))..)))))......))))).)))........... ( -27.52)
>consensus
GUCUAGCUUGCGAAAGUUUUCGAGCUCUGUUUUCCA_AACUUUAAAAUUGCUGUCAUCACAGCAGGAUAUUGGACAGCAGACCAAAAGCUGACGGCUGCGACACUCGAUAGCG
(((((((...((..((((((((.(.((((((.((((...........(((((((....))))))).....)))).)))))))))))))))..)))))).)))........... (-29.04 = -29.29 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:25 2006