Locus 1050

Sequence ID X_DroMel_CAF1
Location 3,060,767 – 3,060,859
Length 92
Max. P 0.898690
window1708

overview

Window 8

Location 3,060,767 – 3,060,859
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 95.01
Mean single sequence MFE -17.74
Consensus MFE -15.98
Energy contribution -17.50
Covariance contribution 1.52
Combinations/Pair 1.08
Mean z-score -1.43
Structure conservation index 0.90
SVM decision value 1.00
SVM RNA-class probability 0.898690
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3060767 92 + 22224390
AUAAUUGUCGGCAAUUUGUGCCAGAAUAAAAAAAACGAAUAGAGAAAUCAUCGGGAAUUAUUGCUCUAUUAAUAUUUUGACAGACGCACAUU
((((((.((((((.....))))...................((....))...)).))))))((((((.((((....)))).))).))).... ( -17.00)
>DroSec_CAF1 32537 89 + 1
AUAAUUGUCGGCAAUUUGUGCCAGAAUAA---AAACGAAUAGAGAAAUCAUCGGGAAUUAUUGCUCUAUUAAUAUUUUGACAGACGCACAUU
((((((.((((((.....)))).......---.........((....))...)).))))))((((((.((((....)))).))).))).... ( -17.00)
>DroSim_CAF1 34938 89 + 1
AUAAUUGUCGGCAAUUUGUGCCAGAAUAA---AAACGAAUAGAGAAAUCAUCGGGAAUUAUUGCUCUAUUAAUAUUUUGACAGACGCACACU
((((((.((((((.....)))).......---.........((....))...)).))))))((((((.((((....)))).))).))).... ( -17.00)
>DroEre_CAF1 33157 89 + 1
AUAAUUGUCGGCAAUUUGUGCCAGAAUAA---AAACGAAUAGAGAAAUCAUUGGGAAUUAUGGCUCUAUUAAUAUUUUGACAGACGCCUUUU
((((((.((((((.....)))).......---.........((....))...)).))))))((((((.((((....)))).))).))).... ( -19.50)
>DroYak_CAF1 33928 89 + 1
AUAAUUGUCGGCAAUUUGUGCCAGAAUAA---AAACGAAUAGAGAAAUCAUUGGGAAUUAUUGCUCUAUUAAUAUUUUGACGGACGCAAAUU
.(((((.((((((.....)))).......---.........((....))...)).)))))((((((..((((....))))..)).))))... ( -18.20)
>consensus
AUAAUUGUCGGCAAUUUGUGCCAGAAUAA___AAACGAAUAGAGAAAUCAUCGGGAAUUAUUGCUCUAUUAAUAUUUUGACAGACGCACAUU
((((((.((((((.....))))...................((....))...)).))))))((((((.((((....)))).))).))).... (-15.98 = -17.50 +   1.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:24 2006