Locus 1048

Sequence ID X_DroMel_CAF1
Location 3,054,156 – 3,054,251
Length 95
Max. P 0.641123
window1705

overview

Window 5

Location 3,054,156 – 3,054,251
Length 95
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 80.58
Mean single sequence MFE -19.32
Consensus MFE -8.05
Energy contribution -7.81
Covariance contribution -0.24
Combinations/Pair 1.08
Mean z-score -2.21
Structure conservation index 0.42
SVM decision value 0.22
SVM RNA-class probability 0.641123
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3054156 95 + 22224390
ACUCGAACAUCCAAUUAGGUGUGACCAA-AUGUAUGUAUCUACGAAUCGUACGAACUU----AUAUAUAUGUAUAUAUCAGGCUUUUAUAUACACUCCAA---
.................((.((......-(((((((((((((((...)))).))...)----))))))))(((((((.........))))))))).))..--- ( -15.10)
>DroSec_CAF1 26109 87 + 1
UCUUGAACACCCAAUUAGGUGUGACCAAAACGUAUGUAUCUAAG---CGUACGAAUUG----AUAUACAUA----UAUCAGG--UUUAUAUACACUCCAA---
......(((((......)))))((((....(((((((......)---))))))...((----((((....)----)))))))--))..............--- ( -21.10)
>DroSim_CAF1 28522 89 + 1
ACUCGAACACCCAAUUAGGUGUGACCAAAACGUAUGUAUCUAGG---CGUACGAAUUG----AUAUACAUAUA--UAUAAGG--UUUAUAUACACUCCAA---
......(((((......)))))((((....(((((((......)---)))))).....----(((((....))--)))..))--))..............--- ( -17.70)
>DroEre_CAF1 26633 93 + 1
ACUCGAACAUCGAGUUAGGUGUGACCAA-ACGUAUGUAUCUAGG---UGUAUCCAUUUACAUAUAUACAUA----UAUCAUG--UUUAUAUACACUGAAAGUG
(((((.....)))))..((((((...((-((((((((((.((.(---((((......)))))...)).)))----))).)))--)))...))))))....... ( -22.50)
>DroYak_CAF1 26943 86 + 1
GCUCGAACAUCGAAUUAGGUGUGACUAA-ACGUAUGUAACUAGG---UGUACGCAUUU----AUAUACAUA----UAUCAUG--GUUAUAUACACUCAAA---
....(((((((......)))))......-..(((((((((((((---((((.(.((..----..)).).))----)))).))--)))))))))..))...--- ( -20.20)
>consensus
ACUCGAACAUCCAAUUAGGUGUGACCAA_ACGUAUGUAUCUAGG___CGUACGAAUUU____AUAUACAUA____UAUCAGG__UUUAUAUACACUCCAA___
......(((((......))))).........(((((((................................................))))))).......... ( -8.05 =  -7.81 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:21 2006