Locus 1047

Sequence ID X_DroMel_CAF1
Location 3,051,050 – 3,051,144
Length 94
Max. P 0.987835
window1704

overview

Window 4

Location 3,051,050 – 3,051,144
Length 94
Sequences 3
Columns 94
Reading direction reverse
Mean pairwise identity 77.50
Mean single sequence MFE -15.34
Consensus MFE -13.25
Energy contribution -13.25
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.80
Structure conservation index 0.86
SVM decision value 2.10
SVM RNA-class probability 0.987835
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3051050 94 - 22224390
CUCUAUAAUUUCUCCUCGCUCCUUCAUCCACUUUCUUUUUGGAGGGUGCGGUGUAAUGUUGCCCUCCAUAUUACCUCAACUUCAUCUGUUCCAG
.............((.(((.((((((.............))))))))).)).(((((((........))))))).................... ( -15.22)
>DroEre_CAF1 23599 71 - 1
CUCUAUAAUUU-----------------------CUUUUUGGAGGGUUUGCUGUAAUGUUGCCCUCCAUAUUACCUCAACUUCAUCUGUUCCAG
...........-----------------------.....((((((((..((......)).)))))))).......................... ( -15.70)
>DroYak_CAF1 23835 92 - 1
CACUAUAAUUUCUCUCCGU--UUUCACCCACUUUCUUUUUGGAGGGUGUGGCGUAAAGUUGCCCUCCAUAUUACCUCAACUUCAUCUGUUCCAG
...................--..................((((((((..(((.....))))))))))).......................... ( -15.10)
>consensus
CUCUAUAAUUUCUC__CG____UUCA_CCACUUUCUUUUUGGAGGGUGUGGUGUAAUGUUGCCCUCCAUAUUACCUCAACUUCAUCUGUUCCAG
.......................................((((((((.............)))))))).......................... (-13.25 = -13.25 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:20 2006