Locus 1045

Sequence ID X_DroMel_CAF1
Location 3,027,613 – 3,027,733
Length 120
Max. P 0.647723
window1702

overview

Window 2

Location 3,027,613 – 3,027,733
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.24
Mean single sequence MFE -23.62
Consensus MFE -22.02
Energy contribution -22.18
Covariance contribution 0.16
Combinations/Pair 1.04
Mean z-score -1.17
Structure conservation index 0.93
SVM decision value 0.24
SVM RNA-class probability 0.647723
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3027613 120 - 22224390
GAAUUCGAUAAAAAAAACUUAGCGUAGUCUUAUGGCCUAGUGAUAUAAUGGUCACUUACAACUACAAAUUGUCCCACAAACGUUUAAUCGAUCCAAUCAGAAUUUGCGCUAAGUUUAGUU
..............((((((((((((.(((..(((...((((((......))))))........................((......))..)))...)))...)))))))))))).... ( -24.60)
>DroSec_CAF1 7990 115 - 1
GAAUUCGAUAA---AAACUUAGCGUAGUCUUAUGGCCUAGUGAUAUAAUGGUCGCUUACAACUACAAA-UGUCCCACAAACGUAUAAUCGAUC-AAUCAGAAUUUGCGCUAAGUUUAGUU
...........---(((((((((((((((....)))....((((....((((((.(((....(((...-((.....))...)))))).)))))-))))).....)))))))))))).... ( -24.50)
>DroSim_CAF1 2962 115 - 1
GAAUUCGAUAA---AAACUUAGCGUAGUCUUAUGGCCUAGUGAUAUAAUGGUCGCUUACAACUACAAA-UGUCCCACAAACGUAUAAUCGAUC-AAUCAGAAUUUGCGCUAAGUUUAGUU
...........---(((((((((((((((....)))....((((....((((((.(((....(((...-((.....))...)))))).)))))-))))).....)))))))))))).... ( -24.50)
>DroEre_CAF1 8024 115 - 1
GAAUUCGAUAA---AAACUUAGCGUAGUCUUAUGGCCUAGUGAUAUAAUGGUCACUUACAACUACAAA-UGCCCCACAAACGUUUAAUCGAUC-AAUCAGAAUUUGCGCUAAGUGUAGUU
...........---..((((((((((.(((.(((((..((((((......))))))............-.))).......((......))...-.)).)))...))))))))))...... ( -22.26)
>DroYak_CAF1 8000 115 - 1
GAAUUCGAUAA---AAACUUAGCGUAGUCUUAUGGCCUAGUGAUAUAAUGGUCACUUACAACUACAAA-UGCCCCACAAACGUUUAAUCGAUC-AAUCAGAAUUUGCGCUAAGUGUAGUU
...........---..((((((((((.(((.(((((..((((((......))))))............-.))).......((......))...-.)).)))...))))))))))...... ( -22.26)
>consensus
GAAUUCGAUAA___AAACUUAGCGUAGUCUUAUGGCCUAGUGAUAUAAUGGUCACUUACAACUACAAA_UGUCCCACAAACGUUUAAUCGAUC_AAUCAGAAUUUGCGCUAAGUUUAGUU
..............((((((((((((.(((..((....((((((......))))))..))....................((......))........)))...)))))))))))).... (-22.02 = -22.18 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:19 2006