Locus 104

Sequence ID X_DroMel_CAF1
Location 424,939 – 425,038
Length 99
Max. P 0.807366
window137

overview

Window 7

Location 424,939 – 425,038
Length 99
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 78.08
Mean single sequence MFE -25.18
Consensus MFE -12.50
Energy contribution -12.58
Covariance contribution 0.08
Combinations/Pair 1.17
Mean z-score -2.06
Structure conservation index 0.50
SVM decision value 0.64
SVM RNA-class probability 0.807366
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 424939 99 - 22224390
AUUUGAAAAGCACGUAAAAAGGCAUGCACUGUGUGCCACACAUAUUAUUGUUACAAUAUUCGUACGAUCAUUUGUUGAGCUUAUGUGUUGUU------------------UUUUAAU
..((((((((((........(((((((...)))))))(((((((.....(((.(((((.((....)).....)))))))).)))))))))))------------------)))))). ( -25.10)
>DroSec_CAF1 27368 99 - 1
AUUUGCACAGCACGUAAAGUGGCAUGCACUGUGUGCCGCACAUAUUAUUGUUACAAUAUUCGCACGAUCAUUUGUUGAGUUUCUGUGUUGUU------------------UUUUAAU
......((((((((((..(((((((((...)))))))))(((......))))))...(((((.((((....)))))))))....))))))).------------------....... ( -26.00)
>DroSim_CAF1 7857 99 - 1
AUUUGCACAGCACGUAAAGUGGCAUGCACUGUGUGCCACACAUAUUAUUGUUACAAUAUUCGCACGAUCAUUUGUUGAGUUUCUGUAUUGUU------------------UUUUAAU
.(((((.......)))))(((((((((...)))))))))............((((..(((((.((((....)))))))))...)))).....------------------....... ( -21.00)
>DroEre_CAF1 29026 96 - 1
AUUUGAACAGCACGUAAAGUGGCAUGCACUGUGUGCCAC--AGAUGACUGCUACAA-AUUCGCACGAUCACUUGCCCAGUUUCUGCGUUCUGC------------------UUUAAU
..((((((((.((((...(((((((((...)))))))))--(((.(((((...(((-..((....))....)))..)))))))))))).))).------------------))))). ( -27.00)
>DroYak_CAF1 24133 115 - 1
AUUUGAGCAGCGCACAAUGUGGCAUGCACCGUGUGCCAC--AAAUUACUGUUGCAAUAUUCGCACGAUCAUUUGCCGAGUUCCUUUUUUCCCCUUUUUUUCACUGCUGUUUUUUAAU
....((((((((((((.((((((((((...)))))))))--)......)).)))...(((((((........)).)))))........................)))))))...... ( -26.80)
>consensus
AUUUGAACAGCACGUAAAGUGGCAUGCACUGUGUGCCACACAUAUUAUUGUUACAAUAUUCGCACGAUCAUUUGUUGAGUUUCUGUGUUGUU__________________UUUUAAU
........(((.......(((((((((...))))))))).............((((...((....))....))))...))).................................... (-12.50 = -12.58 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:25 2006