Locus 1035

Sequence ID X_DroMel_CAF1
Location 3,020,764 – 3,020,884
Length 120
Max. P 0.595773
window1678

overview

Window 8

Location 3,020,764 – 3,020,884
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 93.19
Mean single sequence MFE -38.66
Consensus MFE -34.03
Energy contribution -35.65
Covariance contribution 1.62
Combinations/Pair 1.14
Mean z-score -1.46
Structure conservation index 0.88
SVM decision value 0.13
SVM RNA-class probability 0.595773
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3020764 120 + 22224390
UACUAUUGUCAGUGCCAGGCGGGAACCAGUGGCAAGAAUUGCGAGGUCAAUGUGAACGAAUGCCACAGUAAUCCCUGCAACAAUGGUGCCACCUGCAUCGAUGGCAUCAAUUCGUACAAG
(((.((((...((((((.(((((.((((...(((.(.(((((..(((...((....))...)))...))))).).))).....))))....))))).....))))))))))..))).... ( -33.50)
>DroSec_CAF1 1183 120 + 1
UACUACUGCCAGUGCCAGGCGGGAACCAGUGGCAAGAACUGCGAGGUCAACGUGAACGAGUGCCACAGCAAUCCCUGCAACAAUGGAGCCACCUGCAUCGACGGCAUCAACUCGUACAAG
......((((.((((.(((..((..(((((((((.((.((....))))..((....))..)))))).(((.....))).....)))..)).)))))))....)))).............. ( -33.60)
>DroEre_CAF1 1201 120 + 1
UACUACUGCCAGUGCCAGGCUGGCACCAGUGGCAAGAACUGUGAGGUCAAUGUGAACGAAUGCCACAGCAAUCCCUGCAACAAUGGUGCCACCUGCAUCGAUGGCAUCAACUCGUACAAG
......(((((((((.(((.((((((((((((((.((.((....))))..((....))..)))))).(((.....))).....)))))))))))))))...))))).............. ( -43.50)
>DroYak_CAF1 1129 120 + 1
UACUACUGCCAGUGCCAGGCUGGCACCAGUGGCAAGAACUGCGAGGUCAACGUGAAUGAGUGCCACAGCAAUCCGUGCAACAAUGGUGCCACCUGCAUCGAUGGCAUCAACUCCUACAAG
......(((((((((.(((.((((((((((((((......(((.......))).......)))))).(((.....))).....)))))))))))))))...))))).............. ( -44.02)
>consensus
UACUACUGCCAGUGCCAGGCGGGAACCAGUGGCAAGAACUGCGAGGUCAACGUGAACGAAUGCCACAGCAAUCCCUGCAACAAUGGUGCCACCUGCAUCGAUGGCAUCAACUCGUACAAG
......(((((((((.(((.((((((((((((((.((.((....))))..((....))..)))))).(((.....))).....)))))))))))))))...))))).............. (-34.03 = -35.65 +   1.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:56 2006