| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,009,466 – 3,009,565 |
| Length | 99 |
| Max. P | 0.905333 |
| Location | 3,009,466 – 3,009,565 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 74.24 |
| Mean single sequence MFE | -26.77 |
| Consensus MFE | -12.45 |
| Energy contribution | -12.70 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.49 |
| Structure conservation index | 0.46 |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.905333 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3009466 99 + 22224390 UGAUAAUGUGCUGAGAUCAGCAGAAAGCUGAAUGUGCAUAUAUACGAAAAGGUA---------UAUAUAAUGUGAAUGUGACUUUUUCUUUGGCGUAU--GUACUGUACA ......(((((.....(((((.....)))))..((((((((.((.((((((((.---------(((((.......)))))))))))))..))..))))--)))).))))) ( -26.00) >DroSec_CAF1 386300 101 + 1 -----AUGUGCUAAGAUCAGCAGAAAGCUGCAUGUGCACAUAU--GAAAAGGUAUAUUACAUAUAUAUAAUGUGAAUGUGGCUUUU--CUUGGCGUAUGCGUACUGUACA -----.(((((.......(((.....)))((((((((.((...--((((((.((((((.(((((.....))))))))))).)))))--).)))))))))).....))))) ( -31.20) >DroEre_CAF1 418255 99 + 1 UGAUAAUGUGCUAAGAUCAGCAGAAAGCUGCAUGUGCUUGUAU--GAAUUUAUUUAUGA---AUAUAU-UCGUAAGUGUGGCUUUG---UUUGCGUCU--GUGCUGUGCA ......((..(..((((..(((((((((..(((.......(((--((((.((((....)---))).))-))))).)))..))))..---)))))))))--.....)..)) ( -25.40) >DroYak_CAF1 399539 91 + 1 --AUAAUGUGCUAAGAUCAGCAGAAAGCUGCAUGUGCAUGUAU--GAAUACAUUA-U--------UAU-UCGUGAAUGUGGCUUUG---UUUGCGCCU--GCACUGUACA --.....((((...(....(((((((((..(((...((((.((--((........-)--------)))-.)))).)))..))))..---))))).)..--))))...... ( -24.50) >consensus __AUAAUGUGCUAAGAUCAGCAGAAAGCUGCAUGUGCAUAUAU__GAAAAGAUAU_U______UAUAU_ACGUGAAUGUGGCUUUG___UUGGCGUAU__GUACUGUACA .......((((........((((((((((((((...((((..............................)))).))))))))).....)))))......))))...... (-12.45 = -12.70 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:42 2006