Locus 103

Sequence ID	X_DroMel_CAF1
Location	423,660 – 423,780
Length	120
Max. P	0.952694

overview

Window 5

Location	423,660 – 423,780
Length	120
Sequences	3
Columns	120
Reading direction	forward
Mean pairwise identity	95.28
Mean single sequence MFE	-31.37
Consensus MFE	-28.87
Energy contribution	-28.43
Covariance contribution	-0.44
Combinations/Pair	1.06
Mean z-score	-2.67
Structure conservation index	0.92
SVM decision value	1.42
SVM RNA-class probability	0.952694
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 423660 120 + 22224390
UGCUGUGUAUUACAAUACUUUAAGUACUGUCUUCACUACUUAGAUUAUCAUCAACCCUGCUAAGCUGCUCCAGCAACAGCUUAGUUUGGAUUAGGUAUCCUGCAGCCUUGGGAACACAAC
...(((((..(((.(((.((((((((.((....)).)))))))).)))......((..(((((((((.........)))))))))..)).....)))((((........))))))))).. ( -30.80)
>DroSec_CAF1 26073 120 + 1
UUCUGUGUAUUACAAUACUUUAAGUAGUGUCUUCACUAUUUAGAUUAUCAUGAACCCUGCUGAGCUGCUCCAGCAACAGCUUAGUUUGCCUUAGGUAUCCUGCAGCCUUGGGAACACAAC
...(((((.(((..(((.(((((((((((....))))))))))).)))..))).(((.(((((((((.........)))))(((..((((...))))..)))))))...))).))))).. ( -35.60)
>DroSim_CAF1 6547 120 + 1
UUCUGUGUAUUACAAUACUUUAAGUACUGUCUUCACUAUUUAGAUUAUCAUCAACCCUGCUGAGCUGCUCCAGUAACAGCUUAGUUUGUCUUAGGUAUCCUGCAGCCUUGGGAACACAAC
...(((((......(((.((((((((.((....)).)))))))).)))......(((.(((((((((.........))))))))).......((((........)))).))).))))).. ( -27.70)
>consensus
UUCUGUGUAUUACAAUACUUUAAGUACUGUCUUCACUAUUUAGAUUAUCAUCAACCCUGCUGAGCUGCUCCAGCAACAGCUUAGUUUGCCUUAGGUAUCCUGCAGCCUUGGGAACACAAC
...(((((......(((.((((((((.((....)).)))))))).)))......(((.(((((((((.........))))))))).......((((........)))).))).))))).. (-28.87 = -28.43 +  -0.44)

alignment

secondary structure

dotplot

Window 6

Location	423,660 – 423,780
Length	120
Sequences	3
Columns	120
Reading direction	reverse
Mean pairwise identity	95.28
Mean single sequence MFE	-33.53
Consensus MFE	-27.22
Energy contribution	-27.33
Covariance contribution	0.11
Combinations/Pair	1.03
Mean z-score	-2.21
Structure conservation index	0.81
SVM decision value	0.00
SVM RNA-class probability	0.533557
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 423660 120 - 22224390
GUUGUGUUCCCAAGGCUGCAGGAUACCUAAUCCAAACUAAGCUGUUGCUGGAGCAGCUUAGCAGGGUUGAUGAUAAUCUAAGUAGUGAAGACAGUACUUAAAGUAUUGUAAUACACAGCA
(((((((...(((..((((.((((.....))))....(((((((((.....)))))))))))))..)))(..(((...((((((.((....)).))))))...)))..)...))))))). ( -39.90)
>DroSec_CAF1 26073 120 - 1
GUUGUGUUCCCAAGGCUGCAGGAUACCUAAGGCAAACUAAGCUGUUGCUGGAGCAGCUCAGCAGGGUUCAUGAUAAUCUAAAUAGUGAAGACACUACUUAAAGUAUUGUAAUACACAGAA
((..((..(((...(((..(((...)))..))).......((((..((((...)))).)))).)))..))..))..........(((...(((.(((.....))).)))....))).... ( -32.10)
>DroSim_CAF1 6547 120 - 1
GUUGUGUUCCCAAGGCUGCAGGAUACCUAAGACAAACUAAGCUGUUACUGGAGCAGCUCAGCAGGGUUGAUGAUAAUCUAAAUAGUGAAGACAGUACUUAAAGUAUUGUAAUACACAGAA
.((((((.(((...((((.(((...)))...........(((((((.....))))))))))).)))..(((....)))............(((((((.....)))))))...)))))).. ( -28.60)
>consensus
GUUGUGUUCCCAAGGCUGCAGGAUACCUAAGACAAACUAAGCUGUUGCUGGAGCAGCUCAGCAGGGUUGAUGAUAAUCUAAAUAGUGAAGACAGUACUUAAAGUAUUGUAAUACACAGAA
.((((((.(((...((((.(((...)))...........(((((((.....))))))))))).)))........................(((((((.....)))))))...)))))).. (-27.22 = -27.33 +   0.11)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:24 2006