| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,994,310 – 2,994,401 |
| Length | 91 |
| Max. P | 0.613047 |
| Location | 2,994,310 – 2,994,401 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 84.10 |
| Mean single sequence MFE | -18.50 |
| Consensus MFE | -13.53 |
| Energy contribution | -15.53 |
| Covariance contribution | 2.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.613047 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2994310 91 + 22224390 GCUAUUUCCUGU------AUAUCCUGUGCGCACCCCAAAAACCAAAGAAGUAAAAACCGAAAACACAUUUCUUGACUUUCGUAAGUCACGCACACGG--- ............------....((((((((..............(((((((...............)))))))(((((....))))).)))))).))--- ( -16.86) >DroSec_CAF1 371390 90 + 1 GCUAUUUCCUGU------AUAUCCUGUGUGCACCCCAA-AACUAAAGAAGUAAAAACCCAAAACACAUUUCUUGACUUUCGUAAGUCACGCACACGG--- ............------.....((((((((.......-.....(((((((...............)))))))(((((....)))))..))))))))--- ( -19.86) >DroSim_CAF1 336610 90 + 1 GCUAUUUCCUGU------AUAUCCUGUGUGCACCCCAA-AACCAAAGAAGUAAAAACCCAAAACACAUUUCUUGACUUUCGUAAGUCACGCACACGG--- ............------.....((((((((.......-.....(((((((...............)))))))(((((....)))))..))))))))--- ( -19.86) >DroEre_CAF1 402997 94 + 1 ACUAUUUCCUGU------AUAUCCUGUGUGCACCCCAAAACAUAAAGAAGGCAAAACCCAAAACACAUUUCUUGACUUUCGUAAGUCACGCACACGGCGG ............------....(((((((((.............((((((.................))))))(((((....)))))..)))))))).). ( -19.53) >DroYak_CAF1 384021 91 + 1 GCUGUUUCCUGU------AUAUCCUGUGUGCACCCCAAAAACUAAAGAAGGAAAAACCCAAAACACAUUUCUUGACUUUCGUAAGUCACGCACACGG--- ............------.....((((((((..................((......)).............((((((....)))))).))))))))--- ( -19.60) >DroAna_CAF1 574000 92 + 1 GCUAUUUCCUGUCUAGCUAUAUCCU----GCACCCUGUAAACUA-CCAUAUAUAUAC---AUAUAUAGUUUUUGACUUUUGUAAGUCACGCACACGGCGG ((((.........))))......((----((....(((((((((-...(((((....---))))))))))).((((((....)))))).)))....)))) ( -15.30) >consensus GCUAUUUCCUGU______AUAUCCUGUGUGCACCCCAAAAACUAAAGAAGUAAAAACCCAAAACACAUUUCUUGACUUUCGUAAGUCACGCACACGG___ .......................((((((((.............(((((((...............)))))))(((((....)))))..))))))))... (-13.53 = -15.53 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:33 2006