Locus 1020

Sequence ID X_DroMel_CAF1
Location 2,977,307 – 2,977,403
Length 96
Max. P 0.904217
window1644

overview

Window 4

Location 2,977,307 – 2,977,403
Length 96
Sequences 4
Columns 99
Reading direction reverse
Mean pairwise identity 79.39
Mean single sequence MFE -21.23
Consensus MFE -13.35
Energy contribution -14.35
Covariance contribution 1.00
Combinations/Pair 1.22
Mean z-score -2.14
Structure conservation index 0.63
SVM decision value 1.03
SVM RNA-class probability 0.904217
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2977307 96 - 22224390
GCGGUUGGAAGCGAA-AACGAAGAACCGGCG--AGCAAUUCGUAGAUAAAAUGCGAAAAAUGAAAAAUAUGGUAUAGAAUUUCAUAUUUUGCGCUACCA
.....(((.(((...-..((......))...--.((..((((((.......))))))......(((((((((.........)))))))))))))).))) ( -19.60)
>DroSim_CAF1 320740 96 - 1
GCGGUUGGAAGCGAA-AACGAAGAAUCGGCG--AGAGAUUCGUAGAUAAAAUGUGAAAUAUGAAAAAUGUGGCAUGGAAUUUCAUAUUUUGCGCUACCA
.....(((.(((...-.(((((...((....--.))..))))).........(..((((((((((.(((...)))....))))))))))..)))).))) ( -23.90)
>DroEre_CAF1 384537 99 - 1
GCGGUUGCAAGCGAAAAACGAAGAAGCGGCGAAAAAAAAUUAUAAACAAAAUGUGAAAUAUGCAAAAUGUGGCAUAAAAUGUCAUAUUUUUUGCUGCCA
((........)).............(((((((((((...............(((.......)))...((((((((...))))))))))))))))))).. ( -21.20)
>DroYak_CAF1 366863 95 - 1
GCGGUUGCCAGCGAA-AACGAA-AAGCGAC--AUAAAAAUAAUGGACACAAUGUGAAAUAUGCUAAAUGUGGCAGGAAAUUUCAUAUUCUGCACUAACA
...(((((...((..-..))..-..)))))--...........(..((.((((((((((.(((((....)))))....)))))))))).))..)..... ( -20.20)
>consensus
GCGGUUGCAAGCGAA_AACGAAGAAGCGGCG__AAAAAAUCAUAGACAAAAUGUGAAAUAUGAAAAAUGUGGCAUAAAAUUUCAUAUUUUGCGCUACCA
((((((((...((.....)).....)))))................(((((((((((((((((........))))...))))))))))))))))..... (-13.35 = -14.35 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:26 2006