| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 407,664 – 407,781 |
| Length | 117 |
| Max. P | 0.554428 |
| Location | 407,664 – 407,781 |
|---|---|
| Length | 117 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 74.36 |
| Mean single sequence MFE | -25.83 |
| Consensus MFE | -14.86 |
| Energy contribution | -15.87 |
| Covariance contribution | 1.01 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.554428 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 407664 117 - 22224390 UAUAAACCUGGAUAGAUUGAGGCUUCACAACGU--GACAUUUUUAUAGCGUGAUCCUGAAAUCUAUUCUACUCGAAUAUUGAUUUCGACACGCAAAUUUCAAUCGCAUUUAGAUGCGAU .......((((((.((((((((..((((...))--))..........(((((.((..(((((((((((.....)))))..)))))))))))))...))))))))..))))))....... ( -28.80) >DroSec_CAF1 19382 113 - 1 UAUAACCCUGGAUAGAUUGAGGCUUCACAACGU--GCCGUUUUUGCAGCGUGACCCUGAAAUCUAUUCUACUCGAAUAUUGAUUUCGACACGCAAAUUCCAAUCGCAUCUAUAUG---- ........(((((.(((((.(((..........--))).........(((((....((((((((((((.....)))))..))))))).)))))......)))))..)))))....---- ( -28.10) >DroYak_CAF1 16158 95 - 1 -----------AUAGAUUG-GACUUCAAAACGAGAGACGUUCUGGCAGCGUGACCCUGAGUUCUAUUCUAGUCGAAUAUUGACUUCGACACACAAAUUGCAACCGCA------------ -----------.((((.((-((.((((...(....)(((((.....))))).....)))).)))).))))((((((.......))))))........(((....)))------------ ( -20.60) >consensus UAUAA_CCUGGAUAGAUUGAGGCUUCACAACGU__GACGUUUUUGCAGCGUGACCCUGAAAUCUAUUCUACUCGAAUAUUGAUUUCGACACGCAAAUUCCAAUCGCAU_UA_AUG____ .......((((((.(((((...................((....)).(((((....((((((((((((.....)))))..))))))).)))))......)))))..))))))....... (-14.86 = -15.87 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:20 2006