Locus 1019

Sequence ID X_DroMel_CAF1
Location 2,975,960 – 2,976,074
Length 114
Max. P 0.984112
window1643

overview

Window 3

Location 2,975,960 – 2,976,074
Length 114
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 79.27
Mean single sequence MFE -25.64
Consensus MFE -16.40
Energy contribution -16.56
Covariance contribution 0.16
Combinations/Pair 1.04
Mean z-score -2.51
Structure conservation index 0.64
SVM decision value 1.96
SVM RNA-class probability 0.984112
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2975960 114 - 22224390
CCCCUGCCAG--ACCC--CGCC-ACGUCCCCCCUCCCCCCCGAACGUUCCUCUUCAUUCCGUUUGUUCUAUAAAUGUUUUAAACAUUUUAAUUAGUUUUAAUAAACGGCCUCGGGAGGU
.........(--((..--....-..)))...((((((....(((........)))...((((((((((((.((((((.....))))))....)))....)))))))))....)))))). ( -24.00)
>DroSec_CAF1 353600 105 - 1
CCCGUGCUGGCGAACC--------------GCCCCCCUCCCGUUCGUUCCUCUUCAUUCCGUUUGUUCUAUAAAUGUUUUAAACAUUUUAAUUAGUUUUAAUAAACGGCCUCGGGAGGU
........((((...)--------------)))..(((((((................((((((((((((.((((((.....))))))....)))....)))))))))...))))))). ( -27.31)
>DroSim_CAF1 319335 118 - 1
CCCGUGCUGGCGAACCAACGAC-CCCCCCCCCCCCCCUCCCGUUCGUUCCUCUUCAUUCCGUUUGUUCUAUAAAUGUUUUAAACAUUUUAAUUAGUUUUAAUAAACGGCCUCGGGAGGU
((((....(((((((.((((..-.................)))).))))..........(((((((((((.((((((.....))))))....)))....))))))))))).)))).... ( -26.51)
>DroEre_CAF1 382963 115 - 1
ACCCUGCCAG--ACCC--CUCGCCCCCCUCUGCCCUGCCCUGGUCGUUCCAUUUCAUUCCGUUUGUUCUAUAAAUGUUUUAAACAUUUUAAUUAGUUUUAAUAAACGGCCGCGGGAGGU
..(((((.((--....--)).))..........(((((..(((.....))).......((((((((((((.((((((.....))))))....)))....)))))))))..)))))))). ( -24.40)
>DroYak_CAF1 365414 94 - 1
CC-------------------------CUCCCCGCGUCCCUGGUCGUUCCAUUUCAUUCCGUUUGUUCUAUAAAUGUUUUAAACAUUUUAAUUAGUUUUAAUAAACGGCCUCGGGAGGU
.(-------------------------(((((.(((.(....).)))...........((((((((((((.((((((.....))))))....)))....)))))))))....)))))). ( -26.00)
>consensus
CCCCUGCCAG__AACC__C_____C__CCCCCCCCCCCCCCGGUCGUUCCUCUUCAUUCCGUUUGUUCUAUAAAUGUUUUAAACAUUUUAAUUAGUUUUAAUAAACGGCCUCGGGAGGU
................................................((((((....((((((((((((.((((((.....))))))....)))....)))))))))....)))))). (-16.40 = -16.56 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:25 2006