| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,968,770 – 2,968,871 |
| Length | 101 |
| Max. P | 0.936944 |
| Location | 2,968,770 – 2,968,871 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 85.22 |
| Mean single sequence MFE | -26.10 |
| Consensus MFE | -17.19 |
| Energy contribution | -18.20 |
| Covariance contribution | 1.01 |
| Combinations/Pair | 1.12 |
| Mean z-score | -3.41 |
| Structure conservation index | 0.66 |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.936944 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2968770 101 + 22224390 UGGAUAAUUGGGCUAUGCGAAAAAUCAGCAGCCAUCAAAUCCCUUGCAUUCUAC-AAUACAUAUGUGUAAACAUAUG----CUAUUGUCCACUUUAUUUACUCUAU .((((.....((((..((.........)))))).....))))..........((-(((((((((((....)))))))----.)))))).................. ( -21.70) >DroSec_CAF1 346409 106 + 1 UGGAUAAUUGGGCUAUGCGAAAAAUCAGCGGCCAUCAUUGGCACUGCGCCCACCAAAUCCCUAUGUACAUACAUAUGAACACUAUUGUCCACUUUAUUUACUCUAU (((((((((((((..(((.........)))((((....)))).....))))).......(.(((((....))))).)......))))))))............... ( -25.70) >DroSim_CAF1 312076 106 + 1 UGGAUAAUUGGGCUAUGCGAAAAAUCAGCAGCCAUCAUUGGCACUGCGCCCACCAAAUCCCCAUGUACAUACAUAUGUACACUAUUGUCCACUUUAUUUACUCUAU (((((((((((((..(((.........)))((((....)))).....)))))...........(((((((....)))))))..))))))))............... ( -30.90) >consensus UGGAUAAUUGGGCUAUGCGAAAAAUCAGCAGCCAUCAUUGGCACUGCGCCCACCAAAUCCCUAUGUACAUACAUAUG_ACACUAUUGUCCACUUUAUUUACUCUAU ((((((((.((((..(((.........)))((((....)))).....))))..........(((((....)))))........))))))))............... (-17.19 = -18.20 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:22 2006