Locus 1015

Sequence ID X_DroMel_CAF1
Location 2,959,234 – 2,959,325
Length 91
Max. P 0.995276
window1638

overview

Window 8

Location 2,959,234 – 2,959,325
Length 91
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 96.70
Mean single sequence MFE -18.54
Consensus MFE -16.74
Energy contribution -16.74
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.06
Structure conservation index 0.90
SVM decision value 2.56
SVM RNA-class probability 0.995276
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2959234 91 - 22224390
AGCAGGUGUCAAAAGCAAGUGGCGCACUUGCAAUUACAACAAAAAGCAU-CAAGAGCCGCAAAAAAGGCACGCAAAUUUAAAUGAAAAUUCA
.((.(((((.....(((((((...)))))))..((......))..))))-)....(((........)))..))................... ( -18.20)
>DroSec_CAF1 336500 90 - 1
AGCAGGUGUCAAAAGCAAGUGGCGCACUUGCAAUUACAACAAAAAGCAU-CAGGAGCCGCAAA-AAGGCACGCAAAUUUGAAUGAAAAUUCA
.((.(((((.....(((((((...)))))))..((......))..))))-)....(((.....-..)))..)).....(((((....))))) ( -21.40)
>DroSim_CAF1 302338 90 - 1
AGCAGGUGUCAAAAGCAAGUGGCGCACUUGCAAUUACAACAAAAAGCAU-CAGGAGCCGCAAA-AAGGCACGCAAAUUUAAAUGAAAAUUCA
.((.(((((.....(((((((...)))))))..((......))..))))-)....(((.....-..)))..))................... ( -17.90)
>DroEre_CAF1 365733 90 - 1
AGCAGGUGUCAAAAGCAAGUGGCGCACUUGCAAUUACAACAAAAAGCAU-CAGGAGCCGCAAA-AAGGCAAGCAAAUUUAAAUGAAAUUUCA
.((.(((((.....(((((((...)))))))..((......))..))))-)....(((.....-..)))..))................... ( -17.80)
>DroYak_CAF1 346869 91 - 1
AGCAGGUGUCAAAAGCAAGUGGCGCACUUGCAAUUACAACAAAAAGCAUUCAGGAGCCACAAA-AAGGCACGCAAAUUUAAAUGAAAUUUCA
.((..(((((....(((((((...)))))))..............((........))......-..)))))))................... ( -17.40)
>consensus
AGCAGGUGUCAAAAGCAAGUGGCGCACUUGCAAUUACAACAAAAAGCAU_CAGGAGCCGCAAA_AAGGCACGCAAAUUUAAAUGAAAAUUCA
.((...........(((((((...)))))))........................(((........)))..))................... (-16.74 = -16.74 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:21 2006