Locus 1013

Sequence ID X_DroMel_CAF1
Location 2,953,136 – 2,953,256
Length 120
Max. P 0.813417
window1636

overview

Window 6

Location 2,953,136 – 2,953,256
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 93.06
Mean single sequence MFE -21.04
Consensus MFE -18.36
Energy contribution -18.92
Covariance contribution 0.56
Combinations/Pair 1.05
Mean z-score -1.39
Structure conservation index 0.87
SVM decision value 0.66
SVM RNA-class probability 0.813417
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2953136 120 + 22224390
GCUCUCGCUUCGUCCGCAUCUCGGCAUACCGCUCAACUACCUCAUCUGCCGUUCUUGGCCAUUCAUUCCCAUUCAUUCAACGCUUCAUUGCUGCGGUAAUUGCUUCCAAAUGCUUAAACG
((....)).......((((...((((((((((...............((((....))))......................((......)).))))))..)))).....))))....... ( -22.70)
>DroSec_CAF1 330610 120 + 1
CCUCUCGCUCCGUCCGCACCUCGGCAUACCGCUCAAGUACCUCAUCUGCCGUUCUCGGCCAUUCAUUCCCAUUCAUUCAACGCUUCAUUGCUGCGGUAAUUGCUUCCAAAUGCUUAAACG
...............(((....((((((((((...............((((....))))......................((......)).))))))..))))......)))....... ( -22.40)
>DroSim_CAF1 296442 120 + 1
CCUCUCGCUCCGUCCGCACCUCGGCAUACCGCUCAACUACCUCAUCUGCCGUUCUCGGCCAUUCAUUCCCAUUCAUUCAACGCUUCAUUGCUGCGGUAAUUGCUUCCAAAUGCUUAAACG
...............(((....((((((((((...............((((....))))......................((......)).))))))..))))......)))....... ( -22.40)
>DroEre_CAF1 359730 108 + 1
CCUCUCGC------------UCGACAUACCGCUCAACUACCUCAUCUGCCGUUCUUGGCCAUUCAUUCCCAUUCAUUCAACGCUUCAUUGCUGCGGUAAUUGCUUCCAAAUGCUUAAACG
........------------......((((((...............((((....))))......................((......)).))))))...((........))....... ( -16.70)
>DroYak_CAF1 340692 116 + 1
CCUUUCGCU----CCGCACCUCGGCAUACCGCUCAACUACCUCAUCUGCCGUUCUUGGCCAUUCAUUCCCAUUCAUUCAACGCUUCAUUGCUGCGGUAAUUGCUUCCAAAUGCUUAAACG
.........----..(((....((((((((((...............((((....))))......................((......)).))))))..))))......)))....... ( -21.00)
>consensus
CCUCUCGCU_CGUCCGCACCUCGGCAUACCGCUCAACUACCUCAUCUGCCGUUCUUGGCCAUUCAUUCCCAUUCAUUCAACGCUUCAUUGCUGCGGUAAUUGCUUCCAAAUGCUUAAACG
...............(((....((((((((((...............((((....))))......................((......)).))))))..))))......)))....... (-18.36 = -18.92 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:19 2006