Locus 1012

Sequence ID X_DroMel_CAF1
Location 2,946,964 – 2,947,062
Length 98
Max. P 0.745232
window1635

overview

Window 5

Location 2,946,964 – 2,947,062
Length 98
Sequences 5
Columns 99
Reading direction reverse
Mean pairwise identity 90.88
Mean single sequence MFE -23.14
Consensus MFE -17.76
Energy contribution -17.92
Covariance contribution 0.16
Combinations/Pair 1.04
Mean z-score -1.77
Structure conservation index 0.77
SVM decision value 0.46
SVM RNA-class probability 0.745232
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2946964 98 - 22224390
UGUGUAGUAAGUGAGGGAGACCGCAGCACAAUAAUGG-GGAAAAAGGAAAGCAAAGUAGGAAAUUAUGAUAUCAUCUUUAUGACGCCAUUAUGGUCGCU
..............((....))((.((...(((((((-(..(.(((((.......((((....)))).......))))).)..).))))))).)).)). ( -20.04)
>DroSec_CAF1 324059 96 - 1
U--GUUGUGAGCGAGGGAGACCGCUGCACAAUAAUGG-GGAAAAAGGAAAGCAAAGUAGGAAAUUAUGAUAUCAUCUUUAUGACGCCAUUAUGGUCGCU
.--...(((((((.((....))..)))...(((((((-(..(.(((((.......((((....)))).......))))).)..).)))))))..)))). ( -22.24)
>DroSim_CAF1 290521 96 - 1
U--GUUGUGAGCGAGGGAGACCGCAGCACAAUAAUGG-GGAAAAAGGAAAGCAAAGUAGGAAAUUAUGAUAUCAUCUUUAUGACGCCAUUAUGGUCGCU
.--...((((((..((....))...))...(((((((-(..(.(((((.......((((....)))).......))))).)..).)))))))..)))). ( -22.14)
>DroEre_CAF1 352957 90 - 1
C--GUA----GUGAGGGAGACCG---CACAAUAAUGGGGGAAAAAGGAAAGCAAAGUAGGAAAUUAUGAUAUCAUCUUUAUGACGCCAUUAUGGUCGCU
.--...----(((.((....)).---))).(((((((.(..(.(((((.......((((....)))).......))))).)..).)))))))....... ( -22.04)
>DroYak_CAF1 334146 88 - 1
C--GUA----GUGCGGGAGACCG---CACAAUAAUGG-CGAAAAAGGAAAGCAAAGUAGGAAAUUAUGAUAUCAUCUUUAUGACGCCAUUAUGGUCGC-
.--...----((((((....)))---))).(((((((-((...(((((.......((((....)))).......)))))....)))))))))......- ( -29.24)
>consensus
U__GUAGU_AGUGAGGGAGACCGC_GCACAAUAAUGG_GGAAAAAGGAAAGCAAAGUAGGAAAUUAUGAUAUCAUCUUUAUGACGCCAUUAUGGUCGCU
..........((((((....))........(((((((.(..(.(((((.......((((....)))).......))))).)..).)))))))..)))). (-17.76 = -17.92 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:18 2006