Locus 1010

Sequence ID X_DroMel_CAF1
Location 2,924,670 – 2,924,765
Length 95
Max. P 0.704498
window1633

overview

Window 3

Location 2,924,670 – 2,924,765
Length 95
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 67.30
Mean single sequence MFE -24.63
Consensus MFE -12.75
Energy contribution -16.25
Covariance contribution 3.50
Combinations/Pair 1.25
Mean z-score -1.57
Structure conservation index 0.52
SVM decision value 0.36
SVM RNA-class probability 0.704498
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2924670 95 - 22224390
UCUCUACGUUCGUGUGGCGCUCCAUGUGUGCGCUGCACUGGCAGAAAACAAUUGGUGG-UUCUUAAAAGCG-------GAAUUUGGGACAUACUAUCA-----UCAUA
.......((..(((..((((.........))))..)))..))..........((((((-((((((((....-------...)))))))...)))))))-----..... ( -26.30)
>DroSec_CAF1 310593 101 - 1
UCUCUCCGUUCAUGUGGCGCUCCAUGUGUGCGCUG------CAGAAAACUACUAGUGA-CUACUACUAGUCACUACUACUGCUAGUGACGUACUAUCAUACUAUCACA
........(((.((..((((.........))))..------)))))......((((((-(((....))))))))).........((((.(((......)))..)))). ( -27.30)
>DroSim_CAF1 280172 107 - 1
UCUCUCCGUUCAUGUGGCGCUCCAUGUGUGCGCUGCACUCGCAGAAAACUACUAGUAG-CUACUACUAGUUACUACUACUACUAGUGACACACUAUCAUACUAUCACA
..(((.((....((..((((.........))))..))..)).)))....(((((((((-.......((((....)))))))))))))..................... ( -24.91)
>DroYak_CAF1 319719 89 - 1
UCUCGCCGUUCGUGUGGCUCUCCAUGUGUGCGCUGCACUCGCAAA-AACUAUUGGUGGACUCUUAAA-CAG-------UAUUUUGUGGCAUAA----------UAUUU
....(((....(((..((.(.........).))..)))..(((((-(..(((((.............-)))-------)))))))))))....----------..... ( -20.02)
>consensus
UCUCUCCGUUCAUGUGGCGCUCCAUGUGUGCGCUGCACUCGCAGAAAACUACUAGUGG_CUACUAAAAGUG_______CAACUAGUGACAUACUAUCA_____UCACA
......(((.((..(((....)))..)).)))((((....))))........(((((..(((((((((((.......)))))))))))..)))))............. (-12.75 = -16.25 +   3.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:16 2006