Locus 100

Sequence ID X_DroMel_CAF1
Location 394,844 – 394,947
Length 103
Max. P 0.988068
window132

overview

Window 2

Location 394,844 – 394,947
Length 103
Sequences 4
Columns 104
Reading direction forward
Mean pairwise identity 72.92
Mean single sequence MFE -26.12
Consensus MFE -16.12
Energy contribution -16.30
Covariance contribution 0.19
Combinations/Pair 1.27
Mean z-score -2.14
Structure conservation index 0.62
SVM decision value 2.10
SVM RNA-class probability 0.988068
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 394844 103 + 22224390
AUUGCUUUUGACCGGAUUUUAAGCUAAGAAAAAGCGGCCAAAGCGAAGAAUGUUCAAAUUGUGGUCAAUUAUGUCCAAGUUGUUAAAUAUGCAGCUAGACUGA-
.......(((((((.(.(((.(((.........((.......)).......))).))).).)))))))....(((..((((((.......)))))).)))...- ( -20.09)
>DroSec_CAF1 6536 99 + 1
AUUGCUUUUGACCGGAUUUCAAGCUA----AAGCCGGCCAAAGCGAAGAAUGUGAAAAUUGUGGUCAAGUAUGGCCAAGUUGUUAAAUAUGCAGCUAGACUGA-
.(((((((.(.((((.(((......)----)).))))).)))))))...............((((((....))))))((((((.......)))))).......- ( -25.30)
>DroEre_CAF1 6648 89 + 1
GCUGCAUUUGACCGGACUUUGUGCUAAGAAAAA--------AC---CG---GCCAAAGUCGUGGUCUAAUAUGGCCAAGUCGCUAAAUACGCAGCUUGACUGA-
((((((((.((((((((((((.(((........--------..---.)---))))))))).))))).))).((((......)))).....)))))........- ( -30.50)
>DroYak_CAF1 1370 96 + 1
AUUGCAUUUGACCGGAUUUCCAGCUAAGAAAAA--------AAAAACGAAUGCGAGAAUCGUGGUCAAAUAUAGUCAAGUCGUUAAAUUUGCAGCUUGACUGCA
..((((((((((((((((..(.((.........--------..........)))..)))).)))))))))..((((((((.((.......)).))))))))))) ( -28.61)
>consensus
AUUGCAUUUGACCGGAUUUCAAGCUAAGAAAAA________AGCGAAGAAUGCGAAAAUCGUGGUCAAAUAUGGCCAAGUCGUUAAAUAUGCAGCUAGACUGA_
......(((((((((((((...((...........................))..))))).))))))))..(((.((((((((.......)))))))).))).. (-16.12 = -16.30 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:17 2006