| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 26,364 – 26,484 |
| Length | 120 |
| Max. P | 0.918733 |
| Location | 26,364 – 26,484 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.56 |
| Mean single sequence MFE | -43.02 |
| Consensus MFE | -37.36 |
| Energy contribution | -37.18 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.87 |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.918733 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 26364 120 + 22224390 GCCUUCCGUUCCGGUGAUAAGUAUCGCCGCAAGCUGGCGGAUCUGGAAUCACAGCUGGUGCUGGCAACGCCCAAUUUAGUGUUGCGCCUGGGGAACAAGGCAAAUAAUAAAACCAUAACC (((((..(((((((((((....)))))).......(((.............((((....))))(((((((........))))))))))...))))))))))................... ( -42.30) >DroSec_CAF1 13531 120 + 1 GCCUUUCGUUCCGGUGAUAAGUAUCGCCGUAAGCUGGCGGAUCUGGAAUCACAGCUGGUGCUGGCAACGCCCAAUUUAGUGUUGCGCCUGGGGAACAAGGCAAAUAAUAAAACCAUAACC (((((..(((((((((((....)))))).......(((.............((((....))))(((((((........))))))))))...))))))))))................... ( -42.30) >DroSim_CAF1 13825 120 + 1 GCCUUUCGUUCCGGUGAUAAGUAUCGCCGUAAGCUGGCGGAUCUGGAAUCACAGCUGGUGCUGGCAACGCCCAAUUUAGUGUUGCGCCUGGGGAACAAGGCAAAUAAUAAAACCAUAACC (((((..(((((((((((....)))))).......(((.............((((....))))(((((((........))))))))))...))))))))))................... ( -42.30) >DroYak_CAF1 8026 120 + 1 GGCUUCCGGUCCGGCGAAAAAUAUCGCCGCAAGCUGGCGGAUCUGGAAUCACAGCUGGUGCUGGCAACGCCCAAUUUGGUGUUCCGCCUGGGAAACAAGGCAAAUAAUAAAACCAUAACC (((((((((((((((((......)))))((......))))).))))).....))))(((...((.((((((......))))))))((((.(....).))))..........)))...... ( -45.20) >consensus GCCUUCCGUUCCGGUGAUAAGUAUCGCCGCAAGCUGGCGGAUCUGGAAUCACAGCUGGUGCUGGCAACGCCCAAUUUAGUGUUGCGCCUGGGGAACAAGGCAAAUAAUAAAACCAUAACC ...(((((.(((((((((....))))))((......)))))..)))))...((((....))))(((((((........)))))))((((.(....).))))................... (-37.36 = -37.18 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:05 2006