| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,307 – 14,427 |
| Length | 120 |
| Max. P | 0.539719 |
| Location | 14,307 – 14,427 |
|---|---|
| Length | 120 |
| pre Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 97.78 |
| Mean single sequence MFE | -48.87 |
| Consensus MFE | -46.52 |
| Energy contribution | -46.97 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.95 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.539719 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14307 120 - 22224390 CCGUGGCAUCGAAUGGCGUGGGAUGUGCGGAGGUGGGAGGCUCCAUUCUGGAUAUCGGAGGAUCUGCUGCAGAUGCGGCUAUAGCCACCAUGUUGUGCGAAGGAGUGAUGCUGCCCCACA ..(..((((((.(..(((((((((((.(((((.((((....))))))))).)))))...((....(((((....))))).....)).))))))..).(....)..))))))..)...... ( -47.60) >DroSec_CAF1 1447 120 - 1 CCGUGGCAUCGAAUGGCGUGGGAUGUGCAGAGGUUGGAGGCUCCAUUCUGGAUAUCGGAGGAUCUGCUGCAGAUGCGGCUAUAGCCACCAUGUUGUGCGAAGGCGUAAUGCUGCCCCACA ..((((..(((.(..(((((((((((.(((((..(((.....)))))))).)))))...((....(((((....))))).....)).))))))..).))).((((......)))))))). ( -48.90) >DroSim_CAF1 1519 120 - 1 CCGUGGCAUCGAAUGGCGUGGGAUGUGCGGAGGUUGGAGGCUCCAUUCUGGAUAUCGGAGGAUCUGCUGCAGAUGCGGCUAUAGCCACCAUGUUGUGCGAAGGCGUGAUGCUGCCCCACA ..(..((((((.(..(((((((((((.(((((..(((.....)))))))).)))))...((....(((((....))))).....)).))))))..)((....)).))))))..)...... ( -50.10) >consensus CCGUGGCAUCGAAUGGCGUGGGAUGUGCGGAGGUUGGAGGCUCCAUUCUGGAUAUCGGAGGAUCUGCUGCAGAUGCGGCUAUAGCCACCAUGUUGUGCGAAGGCGUGAUGCUGCCCCACA ..(..((((((.(..(((((((((((.(((((...((.....)).))))).)))))...((....(((((....))))).....)).))))))..)((....)).))))))..)...... (-46.52 = -46.97 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:53 2006