Overview and Download

Proteinortho to tree


 

NAME

Po2tree - Protein inclusion tree  

SYNTAX

po2tree.pl [OPTIONS]... <FILE> >OUTPUT

 

DESCRIPTION

Generates a UPGMA species tree based on (co-)orthologous groups detected by Proteinortho. Thereby species that have a large part of their proteome in common are grouped.

 

OUTPUT FORMAT

The OUTPUT is a newick tree. Branch labels show the number of common genes in the subtrees. Branch lengths represent the number of new common genes since the last node.

 

OPTIONS

-o=<FILE>
Prints the output to the given <FILE> rather than STDOUT.

 

COPYRIGHT

Copyright 2008 Free Software Foundation, Inc. License GPLv2+: GNU GPL version 2 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.  

REPORTING BUGS

Marcus Lechner <marcus[at]bioinf.uni-leipzig.de>  

AUTHORS

Written by Marcus Lechner and Lydia Steiner
Interdisciplinary Center for Bioinformatics, University of Leipzig  

SEE ALSO

proteinortho4.pl an orthology detection tool


 

Index

NAME
SYNTAX
DESCRIPTION
OUTPUT FORMAT
OPTIONS
COPYRIGHT
REPORTING BUGS
AUTHORS
SEE ALSO