haarz

A Simple Data-Adaptive Probabilistic Variant Calling Model

Steve Hoffmann, Peter F. Stadler, Korbinian Strimmer

The reference implementation of our model is part of the haarz tool. For download please go to the segemehl website. haarz.x will be compiled along with the segemehl.x tool. When using our reference implementation please make sure that the sam files are sorted with samtools sort.