(only publications related to generalized ADP)

2015

  1. Maik Riechert, Christian Höner zu Siederdissen, and Peter F Stadler. Algebraic dynamic programming for multiple context-free languages. 2015. submitted.

  2. Christian Höner zu Siederdissen, Sonja J. Prohaska, and Peter F. Stadler. Algebraic dynamic programming over general data structures. 2015. BMC Bioinformatics.

2014

  1. Christian Höner zu Siederdissen, Sonja J. Prohaska, and Peter F. Stadler. Dynamic Programming for Set Data Types. 2014. Brazilian Sympositum on Bioinformatics (BSB 2014). Lecture notes in bioinformatics 8826. Springer, Heidelberg.
    supplement

  2. Christian Höner zu Siederdissen, Ivo L. Hofacker, and Peter F. Stadler. Product Grammars for Alignment and Folding. 2014. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 99, no. PrePrints. 99.: 1. doi:10.1109/TCBB.2014.2326155.
    preprint
    supplement + software

  3. Andrew Farmer, Christian Höner zu Siederdissen, and Andy Gill. The HERMIT in the stream: Fusing stream fusion’s concatMap. 2014. Proceedings of the ACM SIGPLAN 2014 workshop on Partial evaluation and program manipulation. ACM. doi:10.1145/2543728.2543736.
    preprint

2013

  1. Christian Höner zu Siederdissen, Ivo L. Hofacker, and Peter F. Stadler. How to Multiply Dynamic Programming Algorithms. 2013. Brazilian Symposium on Bioinformatics (BSB 2013). Lecture Notes in Bioinformatics 8213. Springer, Heidelberg. doi:10.1007/978-3-319-02624-4_8.
    preprint
    supplement + software

  2. Christian Höner zu Siederdissen. ADPfusion: Efficient Dynamic Programming over Sequence Data. 2013a. HaL8 workshop.
    preprint

  3. Christian Höner zu Siederdissen. Grammatical Approaches to Problems in RNA Bioinformatics. 2013b. Dissertation (PhD thesis), University of Vienna, Vienna, Austria.
    PhD Thesis

2012

  1. Christian Höner zu Siederdissen. Sneaking Around concatMap: Efficient Combinators for Dynamic Programming. 2012. Proceedings of the 17th ACM SIGPLAN international conference on Functional programming. ICFP ’12. New York, NY, USA: ACM. doi:10.1145/2364527.2364559.
    preprint