Table S11.2. The table shows the comparison
of Schizosaccharomyces pombe snoRNAs annotated
by snoStrip and available Ribo-seq
data. Overlapping reads are given in raw numbers and reads per
kilobase million (rpkm). The percentage of maximum entropy (pme)
score is calculated by the Rfoot tool.
chr |
start |
end |
snoStrip name |
original name |
strand |
ERR392088 |
ERR392085 |
ERR392086 |
reads |
rpkm |
pme |
reads |
rpkm |
pme |
reads |
rpkm |
pme |
I |
5369837 |
5369942 |
CD_10-1 |
. |
- |
401 |
1323.74 |
0.519 |
3095 |
871.38 |
0.459 |
1790 |
3879.57 |
0.436 |
I |
3203316 |
3203402 |
CD_11-1 |
. |
+ |
15 |
60.46 |
. |
0 |
0.00 |
. |
29 |
76.74 |
. |
II |
902279 |
902375 |
CD_15-1 |
. |
- |
369 |
1332.30 |
. |
446 |
137.34 |
. |
198 |
469.37 |
. |
II |
1308229 |
1308346 |
CD_16-1 |
. |
+ |
12388 |
36699.72 |
0.317 |
11022 |
2784.90 |
0.425 |
4358 |
8476.60 |
0.348 |
I |
2705951 |
2706040 |
CD_18-1 |
. |
+ |
101 |
393.35 |
. |
228 |
75.73 |
0.456 |
72 |
184.10 |
. |
I |
5148471 |
5148556 |
CD_19-1 |
. |
- |
73 |
297.68 |
. |
736 |
255.97 |
0.678 |
175 |
468.53 |
0.376 |
I |
339551 |
339638 |
CD_19-2 |
. |
- |
0 |
0.00 |
. |
212 |
72.04 |
0.648 |
34 |
88.94 |
. |
I |
3177924 |
3178029 |
CD_1-1 |
. |
+ |
36 |
118.84 |
. |
293 |
82.49 |
0.698 |
72 |
156.05 |
. |
I |
527387 |
527470 |
CD_21-1 |
. |
+ |
145 |
605.53 |
. |
1035 |
368.64 |
0.644 |
371 |
1017.22 |
0.684 |
II |
1586872 |
1586966 |
CD_21-2 |
. |
- |
10 |
36.87 |
. |
24 |
7.55 |
. |
11 |
26.63 |
. |
I |
3851765 |
3851842 |
CD_22-1 |
. |
- |
86 |
387.13 |
. |
207 |
79.47 |
0.000 |
208 |
614.74 |
0.000 |
I |
5144132 |
5144208 |
CD_23-1 |
. |
+ |
0 |
0.00 |
. |
139 |
54.07 |
. |
100 |
299.44 |
. |
III |
950556 |
950637 |
CD_26-1 |
. |
- |
0 |
0.00 |
. |
173 |
63.14 |
. |
72 |
202.29 |
. |
I |
5387558 |
5387644 |
CD_27-1 |
. |
+ |
0 |
0.00 |
. |
463 |
159.15 |
0.546 |
126 |
333.42 |
. |
I |
1234965 |
1235044 |
CD_2-1 |
. |
+ |
52 |
228.15 |
. |
335 |
125.36 |
0.295 |
41 |
118.11 |
. |
I |
527623 |
527713 |
CD_31-1 |
. |
+ |
0 |
0.00 |
. |
321 |
105.44 |
0.449 |
149 |
376.76 |
. |
II |
3874518 |
3874599 |
CD_34-1 |
. |
- |
0 |
0.00 |
. |
196 |
71.53 |
0.376 |
20 |
56.19 |
. |
I |
5011277 |
5011366 |
CD_36-1 |
. |
- |
0 |
0.00 |
. |
205 |
68.09 |
. |
190 |
485.83 |
. |
II |
1308637 |
1308746 |
CD_37-1 |
. |
+ |
856 |
2722.04 |
0.304 |
2288 |
620.53 |
0.335 |
1029 |
2148.37 |
0.383 |
II |
3874322 |
3874411 |
CD_38-1 |
. |
- |
48 |
186.94 |
. |
340 |
112.93 |
0.639 |
30 |
76.71 |
. |
III |
1213659 |
1213738 |
CD_39-1 |
. |
- |
16 |
70.20 |
. |
0 |
0.00 |
. |
64 |
184.36 |
. |
III |
1980848 |
1980927 |
CD_41-1 |
. |
- |
290 |
1272.38 |
0.520 |
0 |
0.00 |
. |
69 |
198.77 |
. |
I |
2627985 |
2628072 |
CD_44-1 |
. |
- |
1088 |
4334.68 |
0.480 |
3094 |
1051.32 |
0.582 |
2247 |
5877.65 |
0.620 |
II |
2720645 |
2720734 |
CD_46-1 |
. |
- |
15 |
58.42 |
. |
137 |
45.51 |
. |
34 |
86.94 |
. |
II |
1791740 |
1791821 |
CD_47-1 |
. |
- |
73 |
312.38 |
. |
171 |
62.41 |
0.000 |
42 |
118.00 |
. |
I |
1712995 |
1713073 |
CD_47-2 |
. |
+ |
100 |
444.38 |
. |
1065 |
403.64 |
0.471 |
409 |
1193.30 |
0.343 |
II |
1707600 |
1707684 |
CD_49-1 |
. |
+ |
0 |
0.00 |
. |
107 |
37.66 |
. |
28 |
75.86 |
. |
I |
2440335 |
2440421 |
CD_51-1 |
. |
+ |
244 |
983.42 |
0.265 |
39 |
13.41 |
. |
63 |
166.71 |
. |
I |
4154911 |
4155005 |
CD_56-1 |
. |
+ |
243 |
896.04 |
. |
148 |
46.54 |
0.376 |
47 |
113.79 |
. |
II |
1756125 |
1756213 |
CD_5-1 |
. |
- |
245 |
965.01 |
0.617 |
394 |
132.36 |
0.493 |
129 |
333.60 |
. |
I |
1200393 |
1200504 |
CD_61-1 |
. |
+ |
34 |
106.17 |
. |
664 |
176.84 |
0.354 |
194 |
397.74 |
0.408 |
I |
5366220 |
5366298 |
CD_68-1 |
. |
- |
415 |
1844.17 |
0.325 |
2095 |
794.01 |
0.192 |
690 |
2013.14 |
0.134 |
I |
1200645 |
1200732 |
CD_6-1 |
. |
+ |
791 |
3151.41 |
0.420 |
2000 |
679.59 |
0.262 |
1092 |
2856.43 |
0.273 |
I |
2265681 |
2265837 |
CD_73-1 |
. |
- |
483 |
1073.17 |
0.127 |
1798 |
340.72 |
0.432 |
639 |
932.17 |
0.427 |
I |
527190 |
527273 |
CD_7-1 |
. |
+ |
0 |
0.00 |
. |
235 |
83.70 |
0.386 |
21 |
57.58 |
. |
II |
4239149 |
4239245 |
CD_8-1 |
. |
- |
227 |
819.60 |
0.289 |
369 |
113.63 |
0.505 |
108 |
256.02 |
. |
I |
1200167 |
1200256 |
CD_9-1 |
. |
+ |
275 |
1071.00 |
0.198 |
73 |
24.25 |
. |
41 |
104.84 |
. |
I |
3394871 |
3395200 |
HACA_12-1 |
. |
+ |
6516 |
6864.87 |
0.359 |
42982 |
3862.12 |
0.401 |
20076 |
13886.78 |
0.391 |
III |
992436 |
992600 |
HACA_13-1 |
AJ632002 |
- |
71 |
150.06 |
. |
322 |
58.04 |
. |
143 |
198.43 |
. |
I |
4154411 |
4154571 |
HACA_17-1 |
. |
+ |
655 |
1418.96 |
0.353 |
1381 |
255.16 |
0.667 |
871 |
1238.85 |
0.574 |
II |
2641323 |
2641461 |
HACA_1-1 |
. |
- |
368 |
924.31 |
0.401 |
820 |
175.66 |
0.540 |
159 |
262.20 |
0.376 |
II |
2447904 |
2448048 |
HACA_24-1 |
AJ632003 |
- |
17 |
40.92 |
. |
295 |
60.56 |
0.731 |
66 |
104.30 |
. |
II |
2266027 |
2266169 |
HACA_27-1 |
AJ632001 |
- |
367 |
895.83 |
0.670 |
1549 |
322.48 |
0.477 |
946 |
1516.08 |
0.494 |
II |
2416511 |
2416693 |
HACA_28-1 |
. |
- |
1336 |
2544.38 |
0.382 |
10774 |
1750.01 |
0.478 |
5178 |
6474.57 |
0.464 |
II |
3962691 |
3962834 |
HACA_2-1 |
. |
+ |
345 |
836.24 |
0.142 |
1088 |
224.92 |
0.607 |
495 |
787.75 |
0.529 |
II |
1917406 |
1917612 |
HACA_33-1 |
AJ632006 |
+ |
1736 |
2920.99 |
0.295 |
9264 |
1329.43 |
0.471 |
4865 |
5374.47 |
0.512 |
II |
2411179 |
2411361 |
HACA_34-1 |
AJ632004 |
+ |
5381 |
10248.00 |
0.322 |
42863 |
6962.19 |
0.434 |
18425 |
23038.61 |
0.464 |
II |
884165 |
884332 |
HACA_3-1 |
AJ632000 |
- |
7310 |
15172.19 |
0.328 |
7796 |
1380.03 |
0.447 |
3618 |
4930.29 |
0.463 |
II |
1957286 |
1957448 |
HACA_43-1 |
AJ632005 |
- |
78 |
166.89 |
. |
240 |
43.80 |
0.564 |
140 |
196.67 |
. |
I |
170709 |
170856 |
HACA_45-1 |
AJ632015 |
+ |
0 |
0.00 |
. |
0 |
0.00 |
. |
0 |
0.00 |
. |
I |
4937238 |
4937394 |
HACA_46-1 |
AJ632008 |
- |
11155 |
24785.20 |
0.410 |
15729 |
2980.65 |
0.415 |
7050 |
10284.54 |
0.375 |
II |
3172781 |
3172923 |
HACA_47-1 |
AJ632011 |
+ |
1434 |
3500.32 |
0.189 |
1404 |
292.29 |
0.195 |
560 |
897.47 |
0.081 |
II |
2121215 |
2121358 |
HACA_48-1 |
AJ632010 |
+ |
220 |
533.25 |
0.387 |
3473 |
717.97 |
0.396 |
1356 |
2157.96 |
0.222 |
I |
2789709 |
2789981 |
HACA_49-1 |
AJ632019 |
+ |
0 |
0.00 |
. |
83 |
9.02 |
. |
0 |
0.00 |
. |
I |
3316466 |
3316609 |
HACA_50-1 |
AJ632009 |
- |
582 |
1410.70 |
0.477 |
3103 |
641.48 |
0.601 |
1057 |
1682.13 |
0.548 |
III |
583416 |
583605 |
HACA_51-1 |
AJ632017 |
+ |
378 |
693.23 |
0.695 |
2126 |
332.53 |
0.689 |
1267 |
1525.58 |
0.700 |
I |
2330436 |
2330647 |
HACA_53-1 |
AJ632016 |
- |
103 |
169.20 |
. |
551 |
77.20 |
0.432 |
196 |
211.39 |
0.505 |
III |
923877 |
924085 |
HACA_54-1 |
AJ632012 |
+ |
1031 |
1718.08 |
0.181 |
2348 |
333.71 |
0.242 |
1352 |
1479.22 |
0.169 |
II |
1468185 |
1468406 |
HACA_55-1 |
AJ632013 |
- |
178 |
279.17 |
0.505 |
251 |
33.57 |
0.887 |
105 |
108.12 |
. |
I |
1451227 |
1451437 |
HACA_56-1 |
AJ632014 |
- |
33 |
54.47 |
. |
0 |
0.00 |
. |
68 |
73.69 |
. |
III |
926481 |
926642 |
HACA_8-1 |
. |
- |
3604 |
7759.01 |
0.347 |
3824 |
702.14 |
0.391 |
2566 |
3627.03 |
0.437 |
II |
3393615 |
3393800 |
HACA_9-1 |
. |
+ |
0 |
0.00 |
. |
526 |
84.05 |
0.675 |
161 |
198.05 |
0.505 |