Table S13: Box C/D snoRNA families with a conserved D' target. The amount of snoRNAs that
were found to belong to this family are given in the second column. Information about the most
conserved targets for box D' and box D are given in their respective columns. Lineages in which
the predicted D' target interaction is present are denoted in column 'conservation' Legend at the bottom.
There is no conservation information for D targets since these are mostly genus, family, or species-specific. The 'verified' column states whether this target was previously published or not.
original name |
# sequences |
box |
aln pos |
sce pos |
ICI_sno |
mean mfe |
conservation |
verified |
snoStrip name |
snR13 |
111 |
D' |
25S-3465 |
25S-2280 |
0,90 |
-14,87 |
4,6 |
+ |
CD_1 |
D |
U6-54 |
U6-51 |
0,16 |
-8,58 |
|
- |
snR66 |
126 |
D' |
25S-3611 |
25S-2417 |
1,21 |
-18,84 |
3..6 |
+ |
CD_2 |
D |
25S-3856 |
25S-2639 |
0,16 |
-18,63 |
|
- |
Nc_CD_3 |
68 |
D' |
25S-4101 |
25S-2882 |
1,24 |
-19,52 |
10,11 |
+ |
CD_3 |
D |
18S-1395 |
18S-1266 |
0,17 |
-12,95 |
|
- |
Nc_CD_4 |
51 |
D' |
18S-55 |
18S-49 |
1,67 |
-22,18 |
7,11 |
+ |
CD_4 |
D |
U6-72 |
U6-68 |
0,29 |
-19,51 |
|
- |
snR75 |
119 |
D' |
25S-3474 |
25S-2288 |
1,19 |
-17,76 |
3..6 |
+ |
CD_7 |
D |
5.8S-150 |
5.8S-139 |
0,39 |
-10,82 |
|
- |
snR48 |
103 |
D' |
25S-4012 |
25S-2793 |
1,49 |
-24,47 |
3,8 |
+ |
CD_8 |
D |
18S-1343 |
18S-1215 |
0,46 |
-9,24 |
|
- |
Nc_CD_14 |
117 |
D' |
25S-3512 |
25S-2326 |
0,91 |
-18,09 |
3..6 |
+ |
CD_14 |
D |
U5-15 |
U5-13 |
0,10 |
-10,60 |
|
- |
Nc_CD_15 |
68 |
D' |
18S-179 |
18S-162 |
1,09 |
-17,22 |
11 |
+ |
CD_15 |
D |
18S-1401 |
18S-1272 |
0,29 |
-11,27 |
|
- |
snR190 |
70 |
D' |
25S-3588 |
25S-2395 |
0,69 |
-19,96 |
4,10,11 |
+ |
CD_16 |
D |
25S-1571 |
25S-609 |
0,09 |
-21,23 |
|
- |
snR74 |
116 |
D' |
18S-33 |
18S-28 |
0,93 |
-18,72 |
3,6 |
+ |
CD_21 |
D |
18S-1406 |
18S-1277 |
0,18 |
-10,62 |
|
- |
snR38 |
128 |
D' |
25S-4034 |
25S-2815 |
1,43 |
-21,94 |
3,4,6 |
+ |
CD_23 |
D |
18S-1091 |
18S-982 |
0,14 |
-9,99 |
|
- |
snR77 |
109 |
D' |
18S-630 |
18S-578 |
1,36 |
-17,27 |
3..6 |
+ |
CD_24 |
D |
18S-1478 |
18S-1348 |
0,40 |
-9,73 |
|
- |
Nc_CD_25 |
54 |
D' |
25S-1856 |
25S-866 |
1,40 |
-27,76 |
11 |
+ |
CD_25 |
D |
5.8S-14 |
5.8S-13 |
0,17 |
-16,50 |
|
- |
snR71 |
134 |
D' |
25S-4182 |
25S-2946 |
1,31 |
-21,33 |
4..6 |
+ |
CD_27 |
D |
25S-1141 |
25S-355 |
0,09 |
-7,50 |
|
- |
Nc_CD_30 |
73 |
D' |
18S-640 |
18S-587 |
1,53 |
-18,32 |
Puc,11 |
+ |
CD_30 |
D |
U6-84 |
U6-79 |
0,07 |
-7,72 |
|
- |
snR73 |
126 |
D' |
25S-4198 |
25S-2959 |
1,58 |
-23,23 |
3..6 |
+ |
CD_31 |
D |
18S-1696 |
18S-1495 |
0,15 |
-16,39 |
|
- |
snR64 |
121 |
D' |
25S-3526 |
25S-2337 |
1,15 |
-18,43 |
6 |
+ |
CD_36 |
D |
18S-976 |
18S-873 |
0,11 |
-11,50 |
|
- |
snR61 |
131 |
D' |
25S-2148 |
25S-1133 |
1,19 |
-18,20 |
3,6 |
+ |
CD_38 |
D |
25S-2494 |
25S-1437 |
0,08 |
-15,34 |
|
- |
Nc_CD_39 |
124 |
D' |
25S-1907 |
25S-917 |
1,10 |
-17,48 |
4,6 |
+ |
CD_39 |
D |
18S-265 |
18S-236 |
0,12 |
-13,34 |
|
- |
U18 |
153 |
D' |
25S-1614 |
25S-649 |
1,32 |
-23,20 |
3,4,6 |
+ |
CD_46 |
D |
18S-475 |
18S-432 |
0,19 |
-10,33 |
|
- |
snR69 |
144 |
D' |
25S-4185 |
25S-2948 |
0,97 |
-20,26 |
4,6 |
+ |
CD_56 |
D |
18S-915 |
18S-816 |
0,07 |
-13,58 |
|
- |
snR70 |
102 |
D' |
18S-1843 |
18S-1639 |
1,48 |
-17,82 |
6 |
+ |
CD_61 |
D |
18S-1272 |
18S-1148 |
0,37 |
-7,99 |
|
- |
snR68 |
16 |
D' |
25S-3857 |
25S-2640 |
1,49 |
-18,79 |
10 |
+ |
CD_65 |
D |
25S-2224 |
25S-1207 |
0,81 |
-14,66 |
|
- |
snR65 |
7 |
D' |
25S-3536 |
25S-2347 |
1,65 |
-16,96 |
Sacch |
+ |
CD_66 |
D |
25S-3512 |
25S-2326 |
0,52 |
-19,90 |
|
- |
snR58 |
85 |
D' |
25S-1628 |
25S-663 |
1,28 |
-20,39 |
6-15 |
+ |
CD_68 |
D |
25S-2132 |
25S-1117 |
0,10 |
-12,77 |
|
- |
LSU-C2809 |
8 |
D' |
25S-4055 |
25S-2836 |
1,81 |
-21,73 |
10 |
+ |
CD_69 |
D |
25S-3965 |
25S-2748 |
0,29 |
-9,80 |
|
- |
Conservation of target interactions: 1) Fungi 2) Microsporidia 3) Mucoromycotina 4) Chytridiomycota 5) Blastocladiomycota
6) Dikarya 7) Basidiomycota 8) Asomycota 9) Taphrinomycotina 10) Saccharomycotina 11) Pezizomycotina 12) Dothideomycetes
13) Eurotiomycetes 14) Leotiomycetes 15) Sordariomycetes Puc) Pucciniomycotina Sacch) Saccharomycetaceae Neuro) Neurospora
3..6) equals 3,4,5,6 6-15) equals 6 without 15