Table S12: Box C/D snoRNA families with a conserved D target. A
conservation pattern for the predicted target interaction is described
in 'conservation'. A legend can be seen at the bottom of the table. Since no
unambiguous D' region is identified, no comprehensive and family-wide
target prediction could be performed.
original name |
# sequences |
aln pos |
sce pos |
ICI_sno |
mean mfe |
conservation |
verified |
snoStrip name |
Nc_CD_13 |
104 |
18S-593 |
18S-541 |
1.67 |
-20.28 |
3,6 |
- |
CD_13 |
snR79 |
113 |
18S-1116 |
18S-1007 |
1.86 |
-19.78 |
3..6 |
+ |
CD_18 |
snR63 |
112 |
25S-3441 |
25S-2256 |
0.81 |
-15.31 |
3..6 |
+ |
CD_33 |
snR55 |
103 |
18S-1398 |
18S-1269 |
1.98 |
-22.31 |
3,6 |
+ |
CD_34 |
U14 |
129 |
18S-456 |
18S-414 |
1.71 |
-21.52 |
3,8 |
+ |
CD_37 |
Nc_CD_40 |
26 |
25S-3061 |
25S-1937 |
0.78 |
-17.05 |
11-13 |
- |
CD_40 |
snR39,snR39b,snR59 |
151 |
25S-1794 |
25S-805 |
1.76 |
-26.08 |
3..6 |
+ |
CD_47 |
snR50 |
10 |
25S-1857 |
25S-867 |
2.37 |
-21.89 |
10 |
+ |
CD_58 |
snR57 |
19 |
18S-1775 |
18S-1572 |
2.27 |
-21.54 |
10 |
+ |
CD_63 |
LSU-G1431 |
17 |
25S-2490 |
25S-1434 |
1.29 |
-18.50 |
10-Sacch |
- |
CD_71 |
LSU-G364 |
3 |
18S-650 |
18S-597 |
1.12 |
-9.00 |
Cand |
- |
CD_72 |
Conservation of target interactions: 1) Fungi 2) Microsporidia 3) Mucoromycotina 4) Chytridiomycota 5) Blastocladiomycota
6) Dikarya 7) Basidiomycota 8) Asomycota 9) Taphrinomycotina 10) Saccharomycotina 11) Pezizomycotina 12) Dothideomycetes
13) Eurotiomycetes 14) Leotiomycetes 15) Sordariomycetes Sacch) Saccharomycetaceae Cand) Candida
3..6) equals 3,4,5,6 6-15) equals 6 without 15