Table S21: Summary of double guide box
H/ACA snoRNA families. Precise target information such as alignment and
single sequence position, ICI scores, number of detected
interactions (\#ia) and mean minimum free interaction energies are
shown for both hairpins. Experimental verification of target
interactions is shown in the column 'verified'. In case the
annotated target shows not the highest ICI scores, the best
predictions and the verified targets are denoted.
original name |
# sequences |
hairpin |
aln pos |
sce pos |
conservation |
ICI_sno |
# interactions |
mean mfe |
verified |
snoStrip name |
Nc_HACA_2 |
82 |
HP1 |
25S-3013 |
25S-1890 |
Aga,Schiz,11 |
1.07 |
42 |
-28.54 |
+ |
HACA_2 |
HP1 |
18S-964 |
18S-861 |
Aga,Schiz,11 |
0.85 |
50 |
-27.02 |
- |
HP2 |
25S-3541 |
25S-2351 |
Aga,9,11 |
1.01 |
41 |
-31.83 |
+ |
snR82 |
9 |
HP1 |
25S-2125 |
25S-1111 |
- |
0.38 |
3 |
-45.71 |
+ |
HACA_31 |
HP2 |
25S-3541 |
25S-2351 |
10 |
1.09 |
8 |
-28.29 |
+ |
snR81 |
3 |
HP1 |
U2-62 |
U2-38 |
Sacch |
1.30 |
3 |
-41.19 |
+ |
HACA_26 |
HP2 |
25S-2060 |
25S-1052 |
Sacch |
1.32 |
3 |
-35.02 |
+ |
snR5 |
31 |
HP1 |
25S-2139 |
25S-1124 |
Schiz,10,Neu |
1.01 |
23 |
-22.97 |
+ |
HACA_27 |
HP2 |
25S-2005 |
25S-1004 |
Schiz,10,Neu |
1.04 |
22 |
-30.75 |
+ |
snR49 |
22 |
HP1 |
18S-131 |
18S-121 |
Scm,10 |
1.07 |
18 |
-25.66 |
+ |
HACA_29 |
HP1 |
25S-3048 |
25S-1925 |
10 |
0.71 |
14 |
-21.06 |
- |
HP1 |
25S-1991 |
25S-990 |
Scm |
0.56 |
10 |
-24.14 |
+ |
HP2 |
18S-342 |
18S-302 |
Scm.10 |
0.92 |
17 |
-29.32 |
+ |
snR3 |
116 |
HP1 |
25S-3311 |
25S-2129 |
6 |
0.74 |
51 |
-42.79 |
+ |
HACA_3 |
HP2 |
25S-3449 |
25S-2264 |
6 |
1.03 |
70 |
-31.31 |
+ |
HP2 |
25S-3315 |
25S-2133 |
6 |
0.90 |
61 |
-33.45 |
+ |
snR83 |
4 |
HP1 |
18S-1218 |
18S-1097 |
Sacch |
0.79 |
3 |
-30.51 |
- |
HACA_30 |
HP1 |
18S-1566** |
18S-1414 |
Sce,Spa |
0.47 |
2 |
-26.26 |
+ |
HP1 |
18S-1567** |
18S-1415 |
Smi |
0 |
1 |
-27.88 |
+ |
HP2 |
18S-1419 |
18S-1290 |
Sacch |
1.32 |
4 |
-24.73 |
+ |
snR80 |
100 |
HP1 |
18S-852** |
18S-758 |
Puc,10,11-Sor |
0.63 |
42 |
-31.02 |
- |
HACA_37 |
HP1 |
18S-853** |
18S-759 |
Puc,10,11-Sor |
0.33 |
21 |
-26.52 |
+ |
HP2 |
25S-1761 |
25S-776 |
10,11 |
1.12 |
55 |
-37.49 |
+ |
snR161 |
9 |
HP1 |
25S-2015 |
25S-1014 |
Sac |
0.70 |
6 |
-27.59 |
- |
HACA_39 |
HP1 |
18S-860 |
18S-766 |
Yli,Kpa,Sac |
0.65 |
6 |
-25.67 |
+ |
HP2 |
25S-4257** |
25S-3013 |
Sac |
0.79 |
6 |
-29.78 |
- |
HP2 |
18S-685** |
18S-632 |
Yli,Kpa,Sac |
0.49 |
4 |
-25.43 |
+ |
HP2 |
18S-686** |
18S-633 |
Sac |
0.50 |
4 |
-26.75 |
- |
AJ632008 |
4 |
HP1 |
25S-3500 |
25S-2314 |
Schiz |
1.27 |
3 |
-26.69 |
+ |
HACA_46 |
HP1 |
U2-58 |
U2-34 |
Schiz |
1.26 |
4 |
-23.14 |
- |
HP2 |
25S-3394 |
25S-2211 |
Schiz |
1.10 |
3 |
-29.76 |
+ |
snR8 |
100 |
HP1 |
18S-775 |
18S-699 |
Sacch,Can,11-Hyp |
0.43 |
33 |
-24.36 |
- |
HACA_6 |
HP1 |
25S-1956 |
25S-960 |
Sac |
0.39 |
24 |
-22.38 |
+ |
HP2 |
25S-2139 |
25S-1124 |
11 |
0.73 |
37 |
-28.49 |
+ |
HP2 |
25S-1987** |
25S-986 |
Deb,Met,Can |
0.17 |
8 |
-26.71 |
+ |
HP2 |
225S-1988** |
25S-987 |
Yli,Sac |
0.16 |
9 |
-39.50 |
+ |
Conservation of target interactions: 1) Fungi 2)
Microsporidia 3) Mucoromycotina 4) Chytridiomycota
5) Blastocladiomycota 6) Dikarya 7)
Basidiomycota 8) Asomycota 9) Taphrinomycotina
10) Saccharomycotina 11) Pezizomycotina
12) Dothideomycetes 13) Eurotiomycetes
14) Leotiomycetes 15) Sordariomycetes
Aga) Agaricomycetes Puc) Pucciniomycotina Schiz)
Schizosaccharomycotina Scm) Saitoella complicata Deb) Debaryomycetaceae
Yli) Yarrowia lipolytica Met) Metschnikowiaceae
Sac) Saccharomycetaceae Kpa) Komagataella pastoris
Sacch) Saccharomyces Can) Candida Hyp) Hypocreomycetidae
Sor) Sordariomycetidae
Neu) Neurospora
3..6) equals 3,4,5,6 6-15) equals 6 without 15