Table S11.3. The table shows the comparison
of Candida albicans snoRNAs annotated
by snoStrip and available Ribo-seq
data. Overlapping reads are given in raw numbers and reads per
kilobase million (rpkm). The percentage of maximum entropy (pme)
score is calculated by the Rfoot tool.
chr |
start |
end |
snoStrip name |
original name |
strand |
SRR1027796 |
SRR1027794 |
SRR1027795 |
reads |
rpkm |
pme |
reads |
rpkm |
pme |
reads |
rpkm |
pme |
chr1A |
2839359 |
2839466 |
CD_10-1 |
snR87 |
- |
4986 |
91.51 |
0.650 |
40 |
828.85 |
. |
7547 |
542.51 |
0.693 |
chr4A |
326781 |
326874 |
CD_12-1 |
snR76 |
- |
5110 |
107.91 |
0.304 |
0 |
0.00 |
. |
2146 |
177.49 |
0.344 |
chr1A |
790699 |
790789 |
CD_13-1 |
. |
+ |
30403 |
663.43 |
. |
0 |
0.00 |
. |
616 |
52.65 |
. |
chrRA |
1771804 |
1771898 |
CD_14-1 |
snR65 |
+ |
932 |
19.47 |
0.819 |
0 |
0.00 |
. |
69 |
5.65 |
. |
chr5A |
777867 |
777952 |
CD_17-1 |
. |
+ |
2278 |
52.63 |
. |
0 |
0.00 |
. |
40 |
3.62 |
. |
chr4A |
549280 |
549370 |
CD_18-1 |
snR79 |
- |
1981 |
43.23 |
0.541 |
0 |
0.00 |
. |
203 |
17.35 |
0.251 |
chr2A |
1141192 |
1141263 |
CD_19-1 |
snR56 |
+ |
22499 |
622.33 |
0.519 |
103 |
3216.45 |
. |
2620 |
283.83 |
0.589 |
chr3A |
1714935 |
1715033 |
CD_19-2 |
snR52 |
- |
16875 |
338.17 |
0.457 |
41 |
927.59 |
. |
1755 |
137.74 |
0.594 |
chrRA |
2227002 |
2227090 |
CD_1-1 |
snR13 |
+ |
72043 |
1607.78 |
0.298 |
279 |
7029.43 |
0.773 |
10186 |
890.31 |
0.377 |
chr4A |
326279 |
326366 |
CD_21-1 |
snR74 |
- |
19828 |
447.59 |
0.440 |
105 |
2675.89 |
. |
7374 |
651.93 |
0.455 |
chr1A |
2346879 |
2346970 |
CD_22-1 |
. |
+ |
137 |
2.96 |
0.792 |
25 |
609.11 |
. |
360 |
30.43 |
. |
chr3A |
1366984 |
1367069 |
CD_23-1 |
. |
+ |
14234 |
328.87 |
0.370 |
251 |
6547.16 |
0.295 |
50507 |
4570.38 |
0.282 |
chr4A |
327040 |
327131 |
CD_24-1 |
snR77 |
- |
38558 |
832.13 |
0.417 |
109 |
2655.73 |
. |
6318 |
534.02 |
0.286 |
chr1A |
1729194 |
1729289 |
CD_26-1 |
snR67 |
- |
2166 |
44.78 |
0.621 |
0 |
0.00 |
. |
113 |
9.15 |
. |
chrRA |
516604 |
516697 |
CD_27-1 |
snR71 |
+ |
47610 |
1005.39 |
0.240 |
163 |
3886.00 |
0.505 |
7928 |
655.69 |
0.271 |
chr5A |
265447 |
265551 |
CD_27-2 |
. |
- |
2790 |
52.69 |
0.504 |
0 |
0.00 |
. |
251 |
18.56 |
0.648 |
chrRA |
1424403 |
1424544 |
CD_2-1 |
snR66 |
+ |
1833 |
25.53 |
0.606 |
182 |
2861.88 |
0.648 |
419 |
22.86 |
0.575 |
chr4A |
326017 |
326131 |
CD_31-1 |
snR73 |
- |
26200 |
451.35 |
0.425 |
80 |
1555.91 |
. |
4492 |
303.08 |
0.651 |
chr2A |
1111763 |
1111920 |
CD_33-1 |
snR63 |
- |
2045 |
25.58 |
0.541 |
0 |
0.00 |
. |
53 |
2.60 |
. |
chrRA |
1324506 |
1324596 |
CD_34-1 |
snR55 |
- |
2117 |
46.20 |
0.753 |
80 |
1970.82 |
. |
469 |
40.08 |
0.334 |
chr1A |
2454510 |
2454603 |
CD_36-1 |
snR64 |
- |
927 |
19.58 |
0.673 |
0 |
0.00 |
. |
368 |
30.44 |
0.704 |
chr1A |
1952994 |
1953113 |
CD_37-1 |
snR128 |
+ |
4573 |
75.47 |
0.731 |
80 |
1490.53 |
. |
990 |
63.99 |
0.747 |
chrRA |
1324300 |
1324394 |
CD_38-1 |
snR61 |
- |
2423 |
50.62 |
0.709 |
40 |
943.48 |
. |
721 |
59.00 |
0.703 |
chr2A |
1092435 |
1092518 |
CD_39-1 |
CD39 |
- |
2830 |
66.96 |
0.086 |
25 |
667.82 |
. |
2163 |
200.45 |
0.153 |
chr5A |
776830 |
776914 |
CD_43-1 |
snR40 |
+ |
4540 |
106.14 |
0.680 |
40 |
1055.79 |
. |
1292 |
118.30 |
0.696 |
chr4A |
963416 |
963514 |
CD_46-1 |
snR18 |
- |
11802 |
236.51 |
0.350 |
0 |
0.00 |
. |
2685 |
210.74 |
0.386 |
chr1A |
1195967 |
1196052 |
CD_47-1 |
snR39b |
+ |
718 |
16.59 |
0.741 |
40 |
1043.37 |
. |
275 |
24.88 |
0.806 |
chr2A |
1303553 |
1303643 |
CD_49-1 |
snR54 |
- |
1384 |
30.20 |
0.539 |
0 |
0.00 |
. |
339 |
28.97 |
0.514 |
chr7A |
258489 |
258583 |
CD_51-1 |
snR24 |
+ |
596 |
12.45 |
0.531 |
80 |
1886.95 |
. |
393 |
32.16 |
0.613 |
chr5A |
265447 |
265551 |
CD_56-1 |
snR69 |
- |
2790 |
52.69 |
0.504 |
0 |
0.00 |
. |
251 |
18.56 |
0.648 |
chr2A |
1304898 |
1305003 |
CD_58-1 |
snR50 |
- |
431 |
8.06 |
0.784 |
0 |
0.00 |
. |
29 |
2.12 |
. |
chr1A |
1166561 |
1166662 |
CD_5-1 |
snR78 |
- |
1438 |
27.96 |
0.461 |
0 |
0.00 |
. |
338 |
25.74 |
0.704 |
chr4A |
327288 |
327384 |
CD_5-2 |
snR60 |
- |
2723 |
55.71 |
0.693 |
79 |
1824.54 |
. |
862 |
69.06 |
0.463 |
chr4A |
325365 |
325476 |
CD_5-3 |
. |
- |
762 |
13.48 |
0.380 |
40 |
798.98 |
. |
338 |
23.42 |
0.482 |
chr1A |
2831179 |
2831337 |
CD_61-1 |
. |
+ |
4780 |
59.41 |
0.492 |
105 |
1473.43 |
. |
1820 |
88.60 |
0.441 |
chrRA |
1324723 |
1324811 |
CD_63-1 |
snR57 |
- |
3848 |
85.88 |
0.480 |
40 |
1007.80 |
. |
347 |
30.33 |
0.496 |
chr2A |
1953991 |
1954109 |
CD_65-1 |
snR68 |
- |
2737 |
45.55 |
0.289 |
0 |
0.00 |
. |
412 |
26.86 |
0.569 |
chr2A |
2216246 |
2216340 |
CD_67-1 |
snR47 |
+ |
34709 |
725.16 |
0.358 |
181 |
4269.23 |
0.547 |
41896 |
3428.19 |
0.267 |
chr6A |
497875 |
497962 |
CD_68-1 |
snR58 |
+ |
985 |
22.23 |
0.355 |
0 |
0.00 |
. |
156 |
13.79 |
0.648 |
chr6A |
498184 |
498278 |
CD_69-1 |
LSU-C2809 |
+ |
750 |
15.67 |
0.640 |
20 |
471.74 |
. |
397 |
32.48 |
0.681 |
chr1A |
2831515 |
2831596 |
CD_6-1 |
. |
+ |
2298 |
55.72 |
0.685 |
54 |
1478.11 |
. |
653 |
62.01 |
0.915 |
chr6A |
24720 |
24806 |
CD_71-1 |
LSU-G1431 |
- |
1943 |
44.37 |
0.449 |
0 |
0.00 |
. |
545 |
48.74 |
0.501 |
chr1A |
1952460 |
1952640 |
CD_72-1 |
LSU-G364 |
+ |
29095 |
317.44 |
0.530 |
410 |
5050.21 |
0.620 |
30689 |
1311.38 |
0.309 |
chr2A |
2179520 |
2179686 |
CD_73-1 |
. |
+ |
50465 |
597.04 |
0.338 |
80 |
1068.51 |
. |
3192 |
147.90 |
0.424 |
chr4A |
326530 |
326626 |
CD_7-1 |
snR75 |
- |
6819 |
139.50 |
0.380 |
126 |
2910.03 |
. |
755 |
60.49 |
0.594 |
chr2A |
407520 |
407625 |
CD_8-1 |
snR48 |
+ |
4882 |
91.31 |
0.506 |
80 |
1689.27 |
. |
696 |
50.98 |
0.628 |
chr1A |
2830896 |
2830992 |
CD_9-1 |
. |
+ |
83780 |
1713.91 |
0.250 |
38 |
877.63 |
. |
55833 |
4473.42 |
0.276 |
chr2A |
833832 |
834031 |
HACA_11-1 |
. |
+ |
9281 |
91.59 |
0.568 |
81 |
902.46 |
. |
7891 |
305.00 |
0.434 |
chrRA |
403802 |
404023 |
HACA_12-1 |
. |
- |
22116 |
196.53 |
0.436 |
122 |
1223.96 |
. |
12869 |
447.89 |
0.445 |
chr1A |
2960461 |
2960755 |
HACA_13-1 |
. |
- |
25934 |
173.24 |
0.809 |
640 |
4826.49 |
0.696 |
10812 |
282.86 |
0.694 |
chr1A |
751817 |
751972 |
HACA_1-1 |
. |
- |
3595 |
45.55 |
0.684 |
88 |
1258.78 |
. |
1741 |
86.39 |
0.532 |
chr5A |
223150 |
223319 |
HACA_21-1 |
. |
+ |
17580 |
204.29 |
0.465 |
0 |
0.00 |
. |
10763 |
489.85 |
0.429 |
chr1A |
1334271 |
1334478 |
HACA_27-1 |
. |
+ |
8618 |
81.76 |
0.359 |
0 |
0.00 |
. |
3217 |
119.54 |
0.529 |
chrRA |
1830426 |
1830631 |
HACA_28-1 |
. |
+ |
2481 |
23.77 |
0.587 |
0 |
0.00 |
. |
2106 |
79.02 |
0.546 |
chrRA |
775020 |
775168 |
HACA_29-1 |
. |
- |
3079 |
40.86 |
0.449 |
31 |
464.41 |
. |
2511 |
130.50 |
0.378 |
chr1A |
2217493 |
2217868 |
HACA_33-1 |
. |
+ |
40767 |
213.50 |
0.479 |
103 |
608.98 |
0.000 |
14379 |
294.93 |
0.526 |
chrRA |
1164530 |
1164715 |
HACA_34-1 |
. |
- |
5541 |
58.82 |
0.634 |
65 |
779.00 |
. |
5573 |
231.71 |
0.570 |
chrRA |
807850 |
808032 |
HACA_35-1 |
. |
- |
5199 |
56.10 |
0.535 |
116 |
1413.14 |
. |
19872 |
839.83 |
0.339 |
chr3A |
458681 |
458853 |
HACA_37-1 |
. |
+ |
47813 |
545.93 |
0.210 |
167 |
2152.71 |
0.000 |
120394 |
5383.89 |
0.162 |
chr2A |
204369 |
204630 |
HACA_3-1 |
. |
- |
11406 |
85.82 |
0.493 |
105 |
891.96 |
. |
203289 |
5990.91 |
0.260 |
chr6A |
773918 |
774252 |
HACA_42-1 |
. |
+ |
2424 |
14.25 |
0.630 |
114 |
756.76 |
0.376 |
1003 |
23.10 |
0.642 |
chr4A |
1381714 |
1381898 |
HACA_43-1 |
. |
- |
9109 |
97.22 |
0.634 |
0 |
0.00 |
. |
5274 |
220.47 |
0.534 |
chr1A |
3120599 |
3120892 |
HACA_44-1 |
. |
- |
12551 |
84.13 |
0.801 |
138 |
1044.26 |
. |
14086 |
369.78 |
0.683 |
chr3A |
1037159 |
1037342 |
HACA_48-1 |
. |
+ |
7820 |
83.92 |
0.462 |
0 |
0.00 |
. |
3166 |
133.07 |
0.552 |
chr1A |
1457058 |
1457198 |
HACA_54-1 |
. |
+ |
6167 |
86.51 |
0.468 |
28 |
443.43 |
. |
1903 |
104.55 |
0.462 |
chr1A |
2105727 |
2105897 |
HACA_6-1 |
. |
- |
11655 |
134.64 |
0.580 |
27 |
352.14 |
. |
15106 |
683.47 |
0.329 |
chr1A |
1570907 |
1571057 |
HACA_9-1 |
. |
+ |
15919 |
208.42 |
0.497 |
40 |
591.24 |
. |
2951 |
151.32 |
0.547 |