Table S11.4. The table shows the comparison
of Ajellomyces capsulatus snoRNAs annotated
by snoStrip and available Ribo-seq
data. Overlapping reads are given in raw numbers and reads per
kilobase million (rpkm). The percentage of maximum entropy (pme)
score is calculated by the Rfoot tool.
chr |
start |
end |
snoStrip name |
original name |
strand |
SRR2015208 |
SRR2015210 |
SRR2015214 |
SRR2015212 |
reads |
rpkm |
pme |
reads |
rpkm |
pme |
reads |
rpkm |
pme |
reads |
rpkm |
pme |
Supercontig_1.3 |
603082 |
603187 |
CD_12-1 |
. |
- |
29906 |
2625.06 |
0.452 |
10522 |
923.04 |
0.494 |
35918 |
2598.61 |
0.472 |
89660 |
5101.99 |
0.481 |
Supercontig_1.5 |
1065989 |
1066075 |
CD_13-1 |
. |
+ |
1370 |
146.82 |
0.284 |
1080 |
115.67 |
0.460 |
4612 |
407.39 |
0.297 |
1851 |
128.60 |
0.332 |
Supercontig_1.1 |
3366322 |
3366407 |
CD_14-1 |
. |
+ |
31 |
3.36 |
. |
1861 |
201.67 |
0.672 |
367 |
32.80 |
0.764 |
172 |
12.09 |
. |
Supercontig_1.2 |
101092 |
101183 |
CD_15-1 |
. |
- |
81 |
8.20 |
. |
1576 |
159.52 |
0.466 |
104 |
8.68 |
. |
252 |
16.55 |
. |
Supercontig_1.3 |
2110560 |
2110678 |
CD_16-1 |
. |
- |
2927 |
228.62 |
0.421 |
4762 |
371.72 |
0.642 |
1246 |
80.21 |
0.738 |
1489 |
75.40 |
0.620 |
Supercontig_1.1 |
5141777 |
5141870 |
CD_17-1 |
. |
+ |
58 |
5.75 |
. |
316 |
31.30 |
0.778 |
29 |
2.37 |
. |
0 |
0.00 |
. |
Supercontig_1.1 |
2067085 |
2067181 |
CD_18-1 |
. |
+ |
175 |
16.80 |
0.289 |
2556 |
245.25 |
0.585 |
865 |
68.45 |
0.397 |
847 |
52.72 |
0.561 |
Supercontig_1.3 |
2674180 |
2674265 |
CD_19-1 |
. |
- |
318 |
34.48 |
0.391 |
717 |
77.70 |
0.505 |
137 |
12.24 |
0.556 |
250 |
17.57 |
0.347 |
Supercontig_1.1 |
6034932 |
6035025 |
CD_19-2 |
. |
+ |
313 |
31.02 |
0.608 |
1395 |
138.17 |
0.604 |
726 |
59.30 |
0.459 |
577 |
37.07 |
0.750 |
Supercontig_1.10 |
593055 |
593190 |
CD_1-1 |
. |
+ |
2048 |
139.82 |
0.396 |
7772 |
530.29 |
0.503 |
808 |
45.47 |
0.615 |
979 |
43.33 |
0.565 |
Supercontig_1.3 |
602581 |
602671 |
CD_21-1 |
. |
- |
2715 |
278.03 |
0.184 |
2905 |
297.32 |
0.477 |
2783 |
234.90 |
0.227 |
3162 |
209.92 |
0.278 |
Supercontig_1.3 |
203067 |
203157 |
CD_22-1 |
. |
- |
6437 |
659.19 |
0.443 |
5738 |
587.26 |
0.557 |
7241 |
611.19 |
0.426 |
6137 |
407.42 |
0.411 |
Supercontig_1.10 |
1126574 |
1126653 |
CD_23-1 |
. |
+ |
12774 |
1490.29 |
0.181 |
4172 |
486.44 |
0.203 |
1990 |
191.36 |
0.224 |
3002 |
227.05 |
0.363 |
Supercontig_1.3 |
603379 |
603474 |
CD_24-1 |
. |
- |
308 |
29.88 |
0.459 |
4439 |
430.40 |
0.508 |
1596 |
127.62 |
0.510 |
3941 |
247.86 |
0.552 |
Supercontig_1.9 |
351978 |
352076 |
CD_26-1 |
. |
- |
182 |
17.12 |
0.713 |
1167 |
109.69 |
0.653 |
713 |
55.27 |
0.752 |
716 |
43.65 |
0.603 |
Supercontig_1.7 |
490090 |
490187 |
CD_27-1 |
. |
+ |
191 |
18.15 |
0.821 |
360 |
34.19 |
0.689 |
149 |
11.67 |
0.376 |
73 |
4.50 |
. |
Supercontig_1.14 |
164811 |
164899 |
CD_2-1 |
. |
- |
212 |
22.20 |
0.418 |
487 |
50.98 |
0.776 |
275 |
23.74 |
0.564 |
147 |
9.98 |
0.000 |
Supercontig_1.4 |
1588873 |
1588965 |
CD_30-1 |
. |
+ |
133 |
13.32 |
0.376 |
1597 |
159.89 |
0.605 |
41 |
3.39 |
. |
269 |
17.47 |
0.909 |
Supercontig_1.3 |
602318 |
602415 |
CD_31-1 |
. |
- |
2481 |
235.74 |
0.570 |
1377 |
130.76 |
0.709 |
2809 |
219.99 |
0.608 |
4168 |
256.74 |
0.568 |
Supercontig_1.6 |
1996809 |
1996920 |
CD_33-1 |
. |
- |
139 |
11.54 |
. |
1233 |
102.32 |
0.548 |
507 |
34.70 |
0.659 |
515 |
27.72 |
0.603 |
Supercontig_1.3 |
765771 |
765869 |
CD_35-1 |
. |
+ |
144 |
13.54 |
0.713 |
510 |
47.94 |
0.615 |
202 |
15.66 |
0.600 |
202 |
12.32 |
0.648 |
Supercontig_1.3 |
2110247 |
2110368 |
CD_37-1 |
. |
- |
322 |
24.53 |
0.548 |
2826 |
215.13 |
0.725 |
1793 |
112.57 |
0.550 |
1721 |
84.98 |
0.707 |
Supercontig_1.8 |
1064004 |
1064092 |
CD_38-1 |
. |
+ |
242 |
25.35 |
0.386 |
1496 |
156.59 |
0.642 |
887 |
76.57 |
0.412 |
788 |
53.50 |
0.319 |
Supercontig_1.1 |
2558700 |
2558800 |
CD_39-1 |
. |
- |
75 |
6.91 |
. |
845 |
77.83 |
0.556 |
728 |
55.30 |
0.433 |
413 |
24.68 |
0.622 |
Supercontig_1.8 |
333781 |
333893 |
CD_3-1 |
. |
- |
272 |
22.38 |
. |
720 |
59.21 |
0.643 |
90 |
6.10 |
. |
129 |
6.88 |
. |
Supercontig_1.4 |
2847158 |
2847242 |
CD_41-1 |
. |
+ |
731 |
80.21 |
0.257 |
1403 |
153.85 |
0.626 |
1197 |
108.25 |
0.322 |
922 |
65.58 |
0.338 |
Supercontig_1.1 |
5143036 |
5143119 |
CD_42-1 |
. |
+ |
955 |
106.05 |
0.244 |
1234 |
136.95 |
0.583 |
731 |
66.90 |
0.490 |
881 |
63.42 |
0.164 |
Supercontig_1.1 |
5564589 |
5564695 |
CD_43-1 |
. |
- |
59 |
5.13 |
. |
564 |
49.01 |
0.533 |
606 |
43.43 |
0.765 |
903 |
50.90 |
0.794 |
Supercontig_1.1 |
3132457 |
3132553 |
CD_44-1 |
. |
- |
30 |
2.88 |
. |
1451 |
139.22 |
0.211 |
161 |
12.74 |
0.000 |
432 |
26.89 |
0.352 |
Supercontig_1.1 |
6205513 |
6205609 |
CD_46-1 |
. |
- |
120 |
11.52 |
. |
675 |
64.77 |
0.792 |
851 |
67.34 |
0.635 |
650 |
40.46 |
0.731 |
Supercontig_1.12 |
492359 |
492445 |
CD_47-1 |
. |
+ |
20 |
2.14 |
. |
907 |
97.15 |
0.562 |
104 |
9.19 |
. |
288 |
20.01 |
0.265 |
Supercontig_1.4 |
1642459 |
1642551 |
CD_49-1 |
. |
+ |
1795 |
179.82 |
0.220 |
6424 |
643.18 |
0.206 |
162 |
13.38 |
1.000 |
593 |
38.51 |
0.480 |
Supercontig_1.8 |
104665 |
104752 |
CD_51-1 |
. |
- |
140 |
14.83 |
. |
767 |
81.21 |
0.490 |
189 |
16.50 |
. |
428 |
29.39 |
0.591 |
Supercontig_1.1 |
5135903 |
5136015 |
CD_56-1 |
. |
- |
65 |
5.35 |
. |
1100 |
90.47 |
0.691 |
174 |
11.80 |
. |
114 |
6.08 |
. |
Supercontig_1.1 |
4015328 |
4015424 |
CD_5-1 |
. |
+ |
124 |
11.90 |
. |
275 |
26.39 |
0.717 |
155 |
12.27 |
0.505 |
403 |
25.08 |
0.583 |
Supercontig_1.3 |
603640 |
603728 |
CD_5-2 |
. |
- |
101 |
10.58 |
. |
1598 |
167.27 |
0.330 |
787 |
67.94 |
0.444 |
1949 |
132.33 |
0.425 |
Supercontig_1.1 |
5142345 |
5142482 |
CD_61-1 |
. |
+ |
5454 |
366.91 |
0.275 |
3777 |
253.95 |
0.464 |
10907 |
604.79 |
0.304 |
23875 |
1041.25 |
0.218 |
Supercontig_1.5 |
812778 |
812863 |
CD_68-1 |
. |
+ |
1856 |
201.25 |
0.121 |
3017 |
326.94 |
0.292 |
2777 |
248.18 |
0.363 |
3890 |
273.44 |
0.348 |
Supercontig_1.1 |
5142652 |
5142738 |
CD_6-1 |
. |
+ |
32 |
3.43 |
. |
1938 |
207.57 |
0.660 |
162 |
14.31 |
0.648 |
152 |
10.56 |
0.792 |
Supercontig_1.8 |
1626956 |
1627100 |
CD_73-1 |
. |
+ |
10412 |
666.41 |
0.525 |
6398 |
409.26 |
0.702 |
76023 |
4010.52 |
0.520 |
94327 |
3913.85 |
0.502 |
Supercontig_1.3 |
602819 |
602915 |
CD_7-1 |
. |
- |
136 |
13.06 |
. |
1448 |
138.93 |
0.203 |
1262 |
99.86 |
0.355 |
820 |
51.04 |
0.376 |
Supercontig_1.4 |
2223202 |
2223303 |
CD_8-1 |
. |
- |
212 |
19.35 |
0.648 |
735 |
67.03 |
0.701 |
410 |
30.84 |
0.598 |
209 |
12.36 |
0.325 |
Supercontig_1.1 |
6154517 |
6154718 |
HACA_11-1 |
. |
- |
4495 |
206.11 |
0.548 |
5751 |
263.55 |
0.666 |
4394 |
166.07 |
0.296 |
5040 |
149.82 |
0.541 |
Supercontig_1.7 |
1637496 |
1637883 |
HACA_12-1 |
. |
- |
25237 |
601.03 |
0.334 |
6226 |
148.19 |
0.691 |
13616 |
267.27 |
0.424 |
15245 |
235.37 |
0.558 |
Supercontig_1.4 |
718279 |
718547 |
HACA_13-1 |
. |
- |
5838 |
200.77 |
0.470 |
15685 |
539.09 |
0.609 |
976 |
27.67 |
0.454 |
1713 |
38.19 |
0.534 |
Supercontig_1.1 |
6432063 |
6432311 |
HACA_15-1 |
. |
- |
4143 |
153.97 |
0.645 |
5877 |
218.28 |
0.834 |
12503 |
382.98 |
0.709 |
22209 |
535.07 |
0.662 |
Supercontig_1.10 |
83830 |
84025 |
HACA_17-1 |
. |
+ |
1352 |
63.90 |
0.554 |
4197 |
198.25 |
0.596 |
892 |
34.75 |
0.655 |
1405 |
43.05 |
0.494 |
Supercontig_1.2 |
583209 |
583369 |
HACA_1-1 |
. |
- |
368 |
21.20 |
0.548 |
1303 |
75.01 |
0.742 |
161 |
7.64 |
0.792 |
549 |
20.50 |
0.659 |
Supercontig_1.4 |
2635696 |
2635870 |
HACA_21-1 |
. |
+ |
5134 |
271.94 |
0.546 |
3436 |
181.89 |
0.657 |
1357 |
59.24 |
0.658 |
2180 |
74.86 |
0.548 |
Supercontig_1.9 |
1288720 |
1288926 |
HACA_28-1 |
. |
+ |
41660 |
1863.90 |
0.406 |
12654 |
565.81 |
0.606 |
14871 |
548.39 |
0.511 |
22552 |
654.11 |
0.561 |
Supercontig_1.6 |
686649 |
686808 |
HACA_2-1 |
. |
- |
661 |
38.32 |
0.629 |
3740 |
216.66 |
0.797 |
172 |
8.22 |
0.796 |
423 |
15.90 |
0.778 |
Supercontig_1.4 |
2630706 |
2630917 |
HACA_37-1 |
. |
- |
4862 |
212.37 |
0.462 |
4589 |
200.33 |
0.752 |
1153 |
41.51 |
0.599 |
1793 |
50.77 |
0.562 |
Supercontig_1.1 |
2049517 |
2049730 |
HACA_3-1 |
. |
- |
4725 |
204.45 |
0.594 |
5303 |
229.33 |
0.669 |
2171 |
77.43 |
0.705 |
5149 |
144.44 |
0.599 |
Supercontig_1.8 |
261463 |
261715 |
HACA_42-1 |
. |
- |
5017 |
183.49 |
0.443 |
6265 |
229.00 |
0.610 |
3283 |
98.97 |
0.396 |
5455 |
129.34 |
0.399 |
Supercontig_1.5 |
1067854 |
1068101 |
HACA_43-1 |
. |
+ |
1009 |
37.65 |
0.419 |
1813 |
67.61 |
0.612 |
545 |
16.76 |
0.633 |
1865 |
45.11 |
0.441 |
Supercontig_1.8 |
349426 |
349545 |
HACA_48-1 |
. |
- |
143 |
11.08 |
0.655 |
1269 |
98.23 |
0.850 |
474 |
30.26 |
0.583 |
656 |
32.94 |
0.672 |
Supercontig_1.6 |
2058656 |
2058839 |
HACA_4-1 |
. |
+ |
2288 |
115.23 |
0.593 |
3095 |
155.78 |
0.718 |
2016 |
83.69 |
0.604 |
1989 |
64.94 |
0.617 |
Supercontig_1.9 |
137514 |
137733 |
HACA_53-1 |
. |
+ |
661 |
27.82 |
0.383 |
1164 |
48.96 |
0.559 |
329 |
11.41 |
0.612 |
450 |
12.28 |
0.724 |
Supercontig_1.5 |
2135736 |
2135897 |
HACA_6-1 |
. |
+ |
2466 |
141.17 |
0.305 |
1501 |
85.88 |
0.780 |
8907 |
420.27 |
0.555 |
15513 |
575.71 |
0.515 |
Supercontig_1.1 |
2044018 |
2044204 |
HACA_7-1 |
. |
- |
7301 |
361.78 |
0.360 |
3235 |
160.20 |
0.651 |
619 |
25.28 |
0.536 |
1555 |
49.95 |
0.464 |
Supercontig_1.4 |
1729823 |
1729999 |
HACA_8-1 |
. |
+ |
393 |
20.58 |
0.567 |
348 |
18.21 |
0.805 |
843 |
36.39 |
0.679 |
562 |
19.08 |
0.732 |
Supercontig_1.2 |
3384852 |
3385061 |
HACA_9-1 |
. |
- |
7304 |
322.10 |
0.400 |
3292 |
145.09 |
0.667 |
4626 |
168.14 |
0.514 |
6438 |
184.05 |
0.591 |