let-7 microRNA
Sequences
Descriptor 1st iteration
parms
wc += gu;
descr
h5 (tag='H1', minlen=3, maxlen=6)
ss (tag='S1', minlen=1, maxlen=2)
h5 (tag='H2', minlen=21, maxlen=21, mispair=2, seq="^GAGGUAG")
ss (tag='S2', minlen=0, maxlen=4)
h5 (tag='H3', minlen=2, maxlen=4, mispair=1)
ss (tag='S3', minlen=3, maxlen=12)
h3 (tag='H3')
ss (tag='S4', minlen=7, maxlen=13)
h3 (tag='H2')
ss (tag='S5', minlen=0, maxlen=2)
h3 (tag='H1')
Descriptor 2nd iteration
parms
wc += gu;
descr
h5 (tag='H1', minlen=3, maxlen=6)
ss (tag='S1', minlen=1, maxlen=2)
h5 (tag='H2', minlen=21, maxlen=21, mispair=2, seq="^GAGGUAGNANNUUGNNNNGUU")
ss (tag='S2', minlen=0, maxlen=4)
h5 (tag='H3', minlen=2, maxlen=4, mispair=1)
ss (tag='S3', minlen=3, maxlen=12)
h3 (tag='H3')
ss (tag='S4', minlen=7, maxlen=13)
h3 (tag='H2')
ss (tag='S5', minlen=0, maxlen=2)
h3 (tag='H1')
Descriptor 3rd iteration
parms
wc += gu;
descr
h5 (tag='H1', minlen=3, maxlen=6)
ss (tag='S1', minlen=0, maxlen=2)
h5 (tag='H2', minlen=19, maxlen=23, mispair=2, seq="^GAGGUAGNANNUUGNNNNGUU", mismatch=2)
ss (tag='S2', minlen=0, maxlen=4)
h5 (tag='H3', minlen=2, maxlen=4, mispair=1)
ss (tag='S3', minlen=3, maxlen=12)
h3 (tag='H3')
ss (tag='S4', minlen=7, maxlen=13)
h3 (tag='H2')
ss (tag='S5', minlen=0, maxlen=2)
h3 (tag='H1')
Result table
| Species | RNAMotif 1 | RNAMotif 2 | RNAMotif 3 | BLAST | Blast Rank | Blast E-Values | ERPIN | ERPIN Rank |
|---|
| homo sapiens (12) | 18 hits | 10 hits | 13 hits | 56 hits | top hits | (1-12) | 1e-23 - 7e-15 | 12 hits | (1-12) |
|---|
| pan troglodytes (12) | 23 hits | 10 hits | 13 hits | 43 hits | top hits | (1-12) | 1e-23 - 7e-15 | 12 hits | (1-12) |
|---|
| macaca mulatta (12) | 29 hits | 10 hits | 13 hits | 40 hits | top hits | (1-12) | 1e-23 - 7e-15 | 12 hits | (1-12) |
|---|
| rattus norvegicus (11) | 13 hits | 9 hits | 12 hits | 33 hits | top hits | (1-11) | 2e-23 - 7e-15 | 11 hits | (1-11) |
|---|
| mus musculus (12) | 16 hits | 10 hits | 12 hits | 45 hits | top hits | (1-12) | 9e-24 - 7e-15 | 12 hits | (1-12) |
|---|
| bos taurus (12) | 13 hits | 10 hits | 10 hits | 43 hits | top hits | (1-12) | 2e-23 - 4e-15 | 11 hits | (1-11) |
|---|
| canis familiaris (7) | 20 hits | 9 hits | 12 hits | 60 hits | top hits | (1,2,6,7,9,10) | 4e-24 - 1e-18 | 11 hits | (1,4,8,9,10,11)) |
|---|
| monodelphis domestica (9) | 15 hits | 8 hits | 10 hits | 18 hits | top hits | (1-9) | 2e-23 - 2e-12 | 9 hits | (1-9) |
|---|
| ornithorhynchus anatinus (7) | 23 hits | 12 hits | 13 hits | 45 hits | top hits | (2,3,4,8,11-13) | 4e-20 - 2e-10 | 13 hits | (3-7,11,13) |
|---|
| gallus gallus (11) | 11 hits | 9 hits | 10 hits | 51 hits | top hits | (1-11) | 6e-24 - 3e-12 | 11 hits | (1-11) |
|---|
| anolis carolinensis | 25 hits | 13 hits | 18 hits | 14 hits | top hits | (1-11, 14) new candidates
(aln with hom.sap and xen.tro.) | 3e-22 - 3e-08 | 14 hits | (1-6,8-12,14) |
|---|
| xenopus tropicalis (9) | 37 hits | 8 hits | 9 hits | 10 hits | top hits | (1-9) | 1e-21 - 3e-09 | 9 hits | (1-9) |
|---|
| danio rerio (18) | 15 hits | 14 hits | 150 hits | 43 hits | top hits | (1, 2, 3, 5-10, 12-18) | 1e-19 - 3e-09 | 19 hits | (1,3-10,12-14,16-19) |
|---|
| takifugu rubripes (10) | 16 hits | 14 hits | 16 hits | 22 hits | top hits | (1, 4, 5, 6, 9, 10, 14, 15, 16, 18) | 5e-20 - 9e-08 | 17 hits | (2, 5-8, 10, 11, 14, 16, 17) |
|---|
| branchiostoma floridae | 14 hits | 4 hits | 6 hits | 9 hits | top hits | | | 4 hits | |
|---|
| ciona intestinalis (6) | 1 hits | | 1 hits | 18 hits | top hits | | | 15 hits | |
|---|
| strongylocentrotus purpuratus | 19 hits | | 3 hits | 1 hits | top hits | | | 1 hits | |
|---|
| drosophila melanogaster (1) | | | | 12 hits | top hits | (1) | 0.002 | 3 hits | |
|---|
| apis mellifera (1) | 1 hits | | 1 hits | 8 hits | top hits | (1) | 2e-04 | 3 hits | |
|---|
| caenorhabditis elegans (1) | 2 hits | 1 hits | 1 hits | 3 hits | top hits | (1) | 1e-04 | 1 hits | (1) |
|---|
| trichinella spiralis | 1 hits | | | top hits | | | | |
|---|
| schmidtea mediterannea (3) | 23 hits | | | top hits | | | 4 hits | |
|---|
| capitella capitata | 1 hits | | | 2 hits | top hits | (1) new cand.
(aln with cae.ele.), RNAMicro | 3e-08 | 1 hits | (1) new cand. |
|---|
| hydra magnipapillata | 44 hits | | 2 hits | 45 hits | top hits | | | 423 hits | |
|---|
| nematostella vectensis | 13 hits | | | 1 hits | top hits | | | | |
|---|
| trichoplax adhaerens | | | | 1 hits | top hits | | | | |
|---|
| monosiga brevicollis | | | | 1 hits | top hits | | | | |
|---|
The numbers in the "Rank" columns denote the rank of the hit(s), that match the annotated sequence(s). If the Rank column is empty, none of the annotated sequences was among the hits. The E-values are the range from the highest to the lowest rank.