Y-RNA

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Descriptor 1
Descriptor 2
Descriptor 3
Result table

Sequences

Seed sequences
Seed alignment
Known sequences used for evaluating
Erpin epn file, Erpin parameters: -3,7 -add 3 4 2 -pcw 101 -cutoff 57.79

Descriptor 1st iteration

parms
wc += gu;
descr
h5 (tag='H1', minlen=5, maxlen=8, seq="UGGUN$")
ss (tag='S1', minlen=4, maxlen=5)
h5 (tag='H2', minlen=7, maxlen=7, mispair=1, seq="^GNNGUGN")
ss (tag='S2', minlen=31, maxlen=66)
h3 (tag='H2', seq="^NCACNNC")
ss (tag='S3', minlen=7, maxlen=7)
h3 (tag='H1', seq="^GAC")

Descriptor 2nd iteration

parms
wc += gu;
descr
h5 (tag='H1', minlen=5, maxlen=8, seq="UGGUN$")
ss (tag='S1', minlen=3, maxlen=8)
h5 (tag='H2', minlen=7, maxlen=7, mispair=1, seq="^GNNGUGN")
ss (tag='S2', minlen=27, maxlen=66)
h3 (tag='H2', seq="^NCACNNC")
ss (tag='S3', minlen=6, maxlen=10)
h3 (tag='H1', seq="^GAC")

Descriptor 3rd iteration

parms
wc += gu;
descr
h5 (tag='H1', minlen=5, maxlen=8, seq="UGGU")
ss (tag='S1', minlen=3, maxlen=8)
h5 (tag='H2', minlen=7, maxlen=7, mispair=1, seq="^GNNGUGN")
ss (tag='S2', minlen=23, maxlen=70)
h3 (tag='H2', seq="^NCACNNC")
ss (tag='S3', minlen=6, maxlen=10)
h3 (tag='H1', seq="GAC")

Result table

Species	RNAMotif 1	RNAMotif 2	RNAMotif 3	BLAST	Blast Rank	Blast E-Values	ERPIN	ERPIN Rank
homo sapiens (4)	111 hits	202 hits	264 hits	1971 hits \| top hits	(1*,2,15,445)	3e-30 - 9e-20	846 hits	(2, 3, 222, 804)
pan troglodytes (4)	104 hits	190 hits	246 hits	1974 hits \| top hits	(1,2,15,426)	3e-30 - 9e-20	820 hits	(2, 3, 201, 782))
macaca mulatta (4)	78 hits	158 hits	209 hits	1772 hits \| top hits	(1,4,6,347)	3e-30 - 1e-19	710 hits	(1, 59, 152, 674)
rattus norvegicus (2)	18 hits	100 hits	136 hits	780 hits \| top hits	(1,4)	2e-31 - 1e-26	31 hits	(1,2)
mus musculus (2)	8 hits	93 hits	138 hits	855 hits \| top hits	(1,2)	2e-31 - 6e-28	28 hits	(1,2)
bos taurus (3)	13 hits	88 hits	136 hits	1132 hits \| top hits	(1,4,7)	3e-29 - 6e-25	21 hits	(1,6,9)
canis familiaris (4)	6 hits	73 hits	114 hits	1949 hits \| top hits	(1,3,4,30)	5e-30 - 7e-14	33 hits	(1,3,9)
monodelphis domestica (4)	5 hits	31 hits	45 hits	579 hits \| top hits	(1,2,4,10)	2e-25 - 4e-05	249 hits	(1,2,4)
ornithorhynchus anatinus (4)	6 hits	61 hits	97 hits	677 hits \| top hits	(1,2,7,10)	8e-25 - 5e-11	16 hits	(1,5,8)
gallus gallus (2)	2 hits	97 hits	117 hits	867 hits \| top hits	(1,2)	5e-25 - 2e-20	8 hits	(1,2)
anolis carolinensis (2)	5 hits	48 hits	68 hits	72 hits \| top hits	(1,2)	2e-26 - 2e-24	6 hits	(1,2)
xenopus tropicalis (4)	3 hits	23 hits	36 hits	62 hits \| top hits	(1,2)	1e-23 - 2e-17	4 hits	(2,3)
danio rerio (1)	4 hits	178 hits	206 hits	891 hits \| top hits	(1)	7e-12	2 hits	(1)
takifugu rubripes (1)	3 hits	31 hits	51 hits	65 hits \| top hits			1 hits	(1)
branchiostoma floridae (1)	2 hits	53 hits	81 hits	25 hits \| top hits			3 hits
ciona intestinalis		3 hits	6 hits	357 hits \| top hits			2 hits
strongylocentrotus purpuratus		9 hits	15 hits	87 hits \| top hits			4 hits
drosophila melanogaster		4 hits	6 hits	186 hits \| top hits			94 hits
apis mellifera		1 hits	1 hits	430 hits \| top hits			6 hits
caenorhabditis elegans (1)			2 hits	213 hits \| top hits			94 hits
trichinella spiralis		2 hits	2 hits	76 hits \| top hits			1 hits
schmidtea mediterannea		2 hits	4 hits	75 hits \| top hits			1 hits
capitella capitata		3 hits	7 hits	48 hits \| top hits			169 hits
hydra magnipapillata		25 hits	35 hits	3553 hits \| top hits			53 hits
nematostella vectensis		10 hits	11 hits	50 hits \| top hits			248 hits
trichoplax adhaerens	1 hits	1 hits	2 hits	27 hits \| top hits			49 hits
monosiga brevicollis		7 hits	7 hits	9 hits \| top hits			21 hits

The numbers in the "Rank" columns denote the rank of the hit(s), that match the annotated sequence(s). If the Rank column is empty, none of the annotated sequences was among the hits. The E-values are the range from the highest to the lowest rank.