RNAse MRP

Sequences

Descriptor 1st iteration

parms
wc += gu;
descr
h5 (tag='H1', minlen=6, maxlen=6, seq="GCCUGU")
ss (tag='S1', minlen=2, maxlen=2)
h5 (tag='H2', minlen=7, maxlen=7)
ss (tag='S2', minlen=7, maxlen=9)
h5 (tag='H3', minlen=3, maxlen=5, mispair=1, ends='mm')
ss (tag='S3', minlen=5, maxlen=7)
h3 (tag='H3')
ss (tag='S4', minlen=6, maxlen=12)
h3 (tag='H2')
ss (tag='S5', minlen=19, maxlen=19)
h5 (tag='H4', minlen=4, maxlen=4, seq="GGCA")
ss (tag='S6', minlen=5, maxlen=5)
h3 (tag='H4')
h5 (tag='H5', minlen=6, maxlen=6)
ss (tag='S7', minlen=4, maxlen=4)
h3 (tag='H5')
ss (tag='S8', minlen=1, maxlen=1)
h5 (tag='H6', minlen=3, maxlen=3, mispair=1)
ss (tag='S9', minlen=1, maxlen=3)
h5 (tag='H7', minlen=6, maxlen=6, mispair=1)
ss (tag='S10', minlen=3, maxlen=16)
h5 (tag='H8', minlen=3, maxlen=5, mispair=1 )
ss (tag='S11', minlen=6, maxlen=9)
h5 (tag='H9', minlen=2, maxlen=4)
ss (tag='S12', minlen=4, maxlen=12)
h5 (tag='H10', minlen=4, maxlen=4)
ss (tag='S13', minlen=3, maxlen=9)
h3 (tag='H10')
ss (tag='S14', minlen=2, maxlen=12)
h3 (tag='H9')
h3 (tag='H8')
ss (tag='S15', minlen=1, maxlen=2)
h3 (tag='H7')
ss (tag='S16', minlen=1, maxlen=2)
h3 (tag='H6')
ss (tag='S17', minlen=22, maxlen=23)
h3 (tag='H1')
ss (tag='S18', minlen=1, maxlen=1)
h5 (tag='H11', minlen=4, maxlen=6)
ss (tag='S19', minlen=4, maxlen=10)
h3 (tag='H11')
ss (tag='S20', minlen=15, maxlen=15)

Descriptor 2nd iteration

parms
wc += gu;
descr
h5 (tag='H1', minlen=5, maxlen=6) 
ss (tag='S1', minlen=2, maxlen=4) 
h5 (tag='H2', minlen=6, maxlen=7) 
ss (tag='S2', minlen=7, maxlen=10, seq="UAC") 
h5 (tag='H3', minlen=3, maxlen=5, mispair=1, ends='mm') 
ss (tag='S3', minlen=4, maxlen=8) 
h3 (tag='H3')
ss (tag='S4', minlen=6, maxlen=13) 
h3 (tag='H2')
ss (tag='S5', minlen=19, maxlen=20) 
h5 (tag='H4', minlen=4, maxlen=4) 
ss (tag='S6', minlen=5, maxlen=5) 
h3 (tag='H4')
ss (tag='SH5_1', minlen=0, maxlen=1) 
h5 (tag='H5', minlen=5, maxlen=6) 
ss (tag='S7', minlen=3, maxlen=7) 
h3 (tag='H5')
ss (tag='S8', minlen=1, maxlen=2) 
h5 (tag='H6', minlen=3, maxlen=3, mispair=1) 
ss (tag='S9', minlen=1, maxlen=4) 
h5 (tag='H7', minlen=5, maxlen=6, mispair=1) 
ss (tag='S10', minlen=3, maxlen=17) 
h5 (tag='H8', minlen=3, maxlen=5, mispair=1 ) 
ss (tag='S11', minlen=6, maxlen=9) 
h5 (tag='H9', minlen=2, maxlen=4) 
ss (tag='S12', minlen=4, maxlen=12) 
h5 (tag='H10', minlen=4, maxlen=4) 
ss (tag='S13', minlen=2, maxlen=10) 
h3 (tag='H10')
ss (tag='S14', minlen=2, maxlen=12) 
h3 (tag='H9')
h3 (tag='H8')
ss (tag='S15', minlen=1, maxlen=3) 
h3 (tag='H7')
ss (tag='S16', minlen=1, maxlen=3) 
h3 (tag='H6')
ss (tag='S17', minlen=22, maxlen=24, seq="UCCGUCA") 
h3 (tag='H1')
ss (tag='S18', minlen=1, maxlen=1) 
h5 (tag='H11', minlen=4, maxlen=6) 
ss (tag='S19', minlen=4, maxlen=10) 
h3 (tag='H11')
ss (tag='S20', minlen=15, maxlen=15) 

Descriptor 3rd iteration

parms
wc += gu;
descr
h5 (tag='H1', minlen=5, maxlen=6) 
ss (tag='S1', minlen=2, maxlen=4) 
h5 (tag='H2', minlen=6, maxlen=7) 
ss (tag='S2', minlen=7, maxlen=10, seq="UAC") 
h5 (tag='H3', minlen=3, maxlen=5, mispair=1, ends='mm') 
ss (tag='S3', minlen=4, maxlen=8) 
h3 (tag='H3')
ss (tag='S4', minlen=6, maxlen=13) 
h3 (tag='H2')
ss (tag='S5', minlen=19, maxlen=20) 
h5 (tag='H4', minlen=4, maxlen=4) 
ss (tag='S6', minlen=5, maxlen=5) 
h3 (tag='H4')
ss (tag='SH5_1', minlen=0, maxlen=1) 
h5 (tag='H5', minlen=5, maxlen=6) 
ss (tag='S7', minlen=3, maxlen=7) 
h3 (tag='H5')
ss (tag='S8', minlen=1, maxlen=2) 
h5 (tag='H6', minlen=2, maxlen=3, mispair=1) 
ss (tag='S9', minlen=0, maxlen=4) 
h5 (tag='H7', minlen=4, maxlen=6, mispair=1) 
ss (tag='S10', minlen=3, maxlen=17) 
h5 (tag='H8', minlen=3, maxlen=5, mispair=1 ) 
ss (tag='S11', minlen=6, maxlen=9) 
h5 (tag='H9', minlen=2, maxlen=4) 
ss (tag='S12', minlen=4, maxlen=12) 
h5 (tag='H10', minlen=3, maxlen=4) 
ss (tag='S13', minlen=3, maxlen=9) 
h3 (tag='H10')
ss (tag='S14', minlen=2, maxlen=12) 
h3 (tag='H9')
h3 (tag='H8')
ss (tag='S15', minlen=0, maxlen=3) 
h3 (tag='H7')
ss (tag='S16', minlen=0, maxlen=3) 
h3 (tag='H6')
ss (tag='S17', minlen=22, maxlen=24, seq="UCCGUCA") 
h3 (tag='H1')
ss (tag='S18', minlen=1, maxlen=1) 
h5 (tag='H11', minlen=4, maxlen=6) 
ss (tag='S19', minlen=4, maxlen=10) 
h3 (tag='H11')
ss (tag='S20', minlen=15, maxlen=15) 

Result table

SpeciesRNAMotif 1RNAMotif 2RNAMotif 3BLASTBlast RankBlast E-ValuesERPINERPIN RankRaveNnARaveNnA Rank
homo sapiens (1)1 hits1 hits4 hits3 hits | top hits (1) 4e-75 7 hits(1)   
pan troglodytes (1)1 hits2 hits3 hits2 hits | top hits (1) 7e-70 8 hits(2)  
macaca mulatta (1)1 hits1 hits2 hits3 hits | top hits (1) 1e-56 7 hits(1)   
rattus norvegicus (1)1 hits1 hits2 hits2 hits | top hits (1) 3e-77 1 hits(1)   
mus musculus (1)1 hits1 hits2 hits3 hits | top hits (1) 1e-77 3 hits(1)   
bos taurus (1)1 hits1 hits1 hits1 hits | top hits (1) 6e-78 4 hits(1) 110 hits 
canis familiaris (1)1 hits1 hits1 hits1 hits | top hits (1) 8e-48 112 hits   
monodelphis domestica (1) 1 hits1 hits1 hits | top hits (1) 3e-25 109 hits   
ornithorhynchus anatinus (1)   4 hits | top hits (1) 19 hits  
gallus gallus (1)  1 hits3 hits | top hits (1) 6e-20 21 hits 1 hits 
anolis carolinensis (1)   1 hits | top hits(1) 2e-15 28 hits1 hits 
xenopus tropicalis (1)  1 hits1 hits | top hits(1) 4e-20 31 hits1 hits 
danio rerio (1)   10 hits | top hits (1)3e-0718 hits 2 hits(1)
takifugu rubripes (1)   4 hits | top hits (1)1e-069 hits (1)
branchiostoma floridae (1)  2 hits6 hits | top hits (1)3e-048 hits  (1)
ciona intestinalis (1)   3 hits | top hits (1)9e-053 hits  (1)
strongylocentrotus purpuratus (1)   4 hits | top hits (1)6e-066 hits  (4)
drosophila melanogaster (1)   9 hits | top hits (5)0.715 hits 1 hits(1)
apis mellifera (1)   37 hits | top hits   2 hits   
caenorhabditis elegans (1)   7 hits | top hits (2)0.402 hits 2 hits(1)
trichinella spiralis   1 hits | top hits   1 hits   
schmidtea mediterannea 1 hits3 hits    13 hits   
capitella capitata   2 hits | top hits   6 hits 1 hits 
hydra magnipapillata  1 hits17 hits | top hits   80 hits 1 hits 
nematostella vectensis  1 hits3 hits | top hits   2 hits   
trichoplax adhaerens  1 hits    4 hits 4 hits 
monosiga brevicollis   7 hits | top hits   1 hits   

The numbers in the "Rank" columns denote the rank of the hit(s), that match the annotated sequence(s). If the Rank column is empty, none of the annotated sequences was among the hits. The E-values are the range from the highest to the lowest rank.