SREBF2_ENSG00000198911_2e5.protein.info Alignment Results

Rank	AlnScore	RatioSum	logRatioSum	focalRatioSum	TargetGenome	chr	startPos	endPos	hitsCount	queryCov	meanIdentity	ori	score	compara
1	14000	1265	65.79	449.94	Homo_sapiens	22	40559221	40631607	18	94.7%	95%	1	2075.9	within_species_paralog: SREBF2
2	10327	161.03	25.76	35.93	Macaca_mulatta	10	85821766	85863757	15	84.4%	91.4%	1	1852.9	ortholog_one2one: SREBF2
3	9002	82.71	18.94	24.42	Canis_familiaris	10	26516522	26577210	17	92.8%	83.7%	-1	1836.7	ortholog_one2one: 481228
4	5522	47.71	8.89	14.19	Gallus_gallus	1	51370206	51385872	15	78.9%	76.6%	-1	1531.3	ortholog_one2one: Q9I8H7_CHICK
5	1179	4.97	1.07	1.19	Canis_familiaris	10
6	975	15	2.71	3.75	Canis_familiaris	X
7	967	10	2.3	2.5	Gasterosteus_aculeatus	contig_11123
8	875	2.5	0.92	0.63	Canis_familiaris	24
9	863	3.77	1.33	0.63	Gasterosteus_aculeatus	contig_8218
10	699	1	0	0.25	Macaca_mulatta	1
11	699	1	0	0.25	Homo_sapiens	5
12	665	0.91	-0.08	0.23	Canis_familiaris	X
13	661	1.79	0.58	0.22	Gasterosteus_aculeatus	contig_8279
14	606	1.51	0.41	0.19	Gasterosteus_aculeatus	contig_9740
15	519	1.02	0.02	0.17	Gallus_gallus	18
16	495	2	0.69	1	Gasterosteus_aculeatus	contig_4216
17	481	0.59	-0.52	0.15	Macaca_mulatta	11
18	477	0.94	-0.05	0.16	Canis_familiaris	6
19	459	0.56	-0.57	0.14	Homo_sapiens	12
20	408	1	0	0.13	Macaca_mulatta	X
21	368	0.94	-0.05	0.12	Gallus_gallus	4
22	338	0.74	-0.29	0.12	Homo_sapiens	7
23	333	1.17	0.16	1.17	Gasterosteus_aculeatus	contig_4215	18120	24716	9	55%	49.6%	-1	691.7	noComparaHits: ENSGACG00000021431 ; ENSGACG00000007259
24	331	1.09	0.09	0.12	Gasterosteus_aculeatus	contig_2001
25	314	1.13	0.12	1.13	Gasterosteus_aculeatus	contig_4389	128552	135308	8	61.7%	46.1%	1	652.2	noComparaHits: ENSGACG00000012064
26	312	0.72	-0.32	0.12	Homo_sapiens	8
27	307	0.72	-0.32	0.12	Gallus_gallus	15
28	301	1.04	0.04	0.12	Gallus_gallus	15
29	298	0.7	-0.35	0.12	Gasterosteus_aculeatus	contig_5909
30	297	0.7	-0.35	0.12	Homo_sapiens	22
31	293	0.7	-0.35	0.12	Macaca_mulatta	15
32	291	0.7	-0.35	0.12	Macaca_mulatta	10
33	277	0.68	-0.38	0.11	Gallus_gallus	4
34	275	1	0	0.11	Macaca_mulatta	11
35	271	1	0	0.11	Homo_sapiens	12
36	269	0.99	0	0.11	Canis_familiaris	26
37	268	0.67	-0.39	0.11	Gallus_gallus	1
38	265	0.67	-0.39	0.11	Homo_sapiens	9
39	263	0.67	-0.39	0.11	Gallus_gallus	13
40	262	0.67	-0.39	0.11	Gallus_gallus	4
41	257	0.66	-0.41	0.11	Canis_familiaris	32
42	253	0.66	-0.41	0.11	Macaca_mulatta	3
43	240	0.65	-0.42	0.11	Homo_sapiens	16
44	238	0.64	-0.44	0.11	Canis_familiaris	6
45	235	0.64	-0.44	0.11	Homo_sapiens	19
46	218	0.63	-0.45	0.11	Gasterosteus_aculeatus	contig_628
47	216	0.99	0	0.99	Macaca_mulatta	16	17717122	17724076	6	40.8%	50.9%	-1	448.8	between_species_paralog: SREBF1
48	151	0.58	-0.53	0.1	Macaca_mulatta	7
49	149	0.58	-0.53	0.1	Canis_familiaris	7
50	97	0.86	-0.14	0.86	Gallus_gallus	14	4933487	4934917	3	16.2%	58.8%	-1	203.4	noComparaHits: 416506

Data table for reference protein loci

QueryProtein(s)=ENSP00000354476 (contained in p4)
QueryGenome=Homo_sapiens

ref-loci	geneName	protID	transID	geneID	protName	chr	startPos	endPos	meanPos	ori	numExons	protLength	selfscore
p1	NHP2L1	ENSP00000347401	ENST00000355257	ENSG00000100138	NH2L1_HUMAN	22	40400883	40414746	40401072	-1	3	128	228.6
p2	NP_689726.3	ENSP00000300398	ENST00000300398	ENSG00000167077	NP_689726.3	22	40425489	40525249	40479963	1	31	1280	2264.8
p3	CCDC134	ENSP00000255784	ENST00000255784	ENSG00000100147	CC134_HUMAN	22	40534841	40551773	40539243	1	6	229	342.8
p4	SREBF2	ENSP00000354476	ENST00000361204	ENSG00000198911	SRBP2_HUMAN	22	40559221	40631610	40604020	1	19	1141	2075.9
p4	Q8N8F0_HUMAN	ENSP00000327934	ENST00000333487	ENSG00000184068	Q8N8F0_HUMAN	22	40559573	40560424	40559762	-1	2	129	140
p5	Q5H8V2_HUMAN	ENSP00000370755	ENST00000381351	ENSG00000205705	Q5H8V2_HUMAN	22	40637198	40640516	40640247	-1	2	177	129
p6	TNFRSF13C	ENSP00000291232	ENST00000291232	ENSG00000159958	TR13C_HUMAN	22	40651317	40652723	40652136	-1	3	184	232.6
p7	CENPM	ENSP00000215980	ENST00000215980	ENSG00000100162	CENPM_HUMAN	22	40665006	40673026	40671209	-1	6	180	317.7
p8	Q6ICG7_HUMAN	ENSP00000370752	ENST00000381348	ENSG00000205704	Q6ICG7_HUMAN	22	40684167	40684490	40684323	1	1	107	158
p9	SEPT3	ENSP00000332866	ENST00000328414	ENSG00000100167	SEPT3_HUMAN	22	40707624	40722917	40715518	1	10	345	674.6
p10	WBP2NL	ENSP00000328800	ENST00000329620	ENSG00000183066	NP_689826.1	22	40724769	40753131	40748252	1	6	309	323.1
p11	NAGA	ENSP00000355349	ENST00000361920	ENSG00000198951	NAGAB_HUMAN	22	40786229	40796247	40791823	-1	9	411	893.5
p12	FAM109B	ENSP00000312753	ENST00000321753	ENSG00000177096	F109B_HUMAN	22	40803244	40804023	40803628	1	1	259	498
p13	C22orf32	ENSP00000327467	ENST00000331479	ENSG00000183172	NP_201575.2	22	40805719	40808012	40805875	1	2	107	186
p14	NDUFA6	ENSP00000330937	ENST00000331989	ENSG00000184983	NDUA6_HUMAN	22	40812133	40816772	40813106	-1	3	154	324.1

total length of ref-loci (on slice) = 415890 (42e4)

region 1 (region 1 for Hsap)

syntenyRegion: Homo_sapiens.glob01.22.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 22 -i 40400886:40816772 -f 31e4 some_geneID_to_be_selected
scoreRatio_sum=1265 log_scoreRatio_sum=65.79 focal_scoreRatio_sum=449.94
AlnScore=14000 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Homo_sapiens

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000347401	NHP2L1	q1	q1	228.6	22	40400886	40406314	-1	2	99.2%	99.2%	384	0.3 / 0.01 = 30	within_species_paralog: NHP2L1	1
p2	q2	+/+	ENSP00000300398	NP_689726.3	q2	q2	2264.8	22	40425489	40521615	1	25	93.3%	91.3%	3825	1 / 0.01 = 100	noComparaHits: ENSG00000209534 ; Y ; NP_689726.3	1
p3	q3	+/+	ENSP00000255784	CCDC134	q3	q3	342.8	22	40535831	40539772	1	4	66.8%	87.4%	549	1 / 0.01 = 100	noComparaHits: CCDC134	1
p4	q4	++/++	ENSP00000354476	SREBF2	q4	q4	2075.9	22	40559221	40631607	1	18	94.7%	95%	3402	0.77 / 0.01 = 77	within_species_paralog: SREBF2	1
p4	q4	++/++	ENSP00000327934	Q8N8F0_HUMAN	q4	q4	140	22	40559654	40559941	-1	1	74.4%	97.9%	288	1 / 0.01 = 100	noComparaHits: SREBF2 ; Q8N8F0_HUMAN	1
p5	q5	+/+	ENSP00000370755	Q5H8V2_HUMAN	q5	q5	129	22	40640076	40640501	-1	1	80.2%	83.1%	426	1 / 0.01 = 100	noComparaHits: Q5H8V2_HUMAN	1
p6	q6	+/+	ENSP00000291232	TNFRSF13C	q6	q6	232.6	22	40651320	40652723	-1	3	97.8%	82%	633	1 / 0.01 = 100	noComparaHits: TNFRSF13C	1
p7	q7	+/+	ENSP00000215980	CENPM	q7	q7	317.7	22	40665009	40672446	-1	5	89.4%	90.7%	546	1 / 0.01 = 100	noComparaHits: CENPM	1
p8	q8	+/+	ENSP00000370752	Q6ICG7_HUMAN	q8	q8	158	22	40684167	40684487	1	1	100%	85%	321	1 / 0.01 = 100	noComparaHits: Q6ICG7_HUMAN	1
p9	q9	+/+	ENSP00000332866	SEPT3	q9	q9	674.6	22	40707624	40720664	1	8	91%	88.3%	1092	0.49 / 0.01 = 49	within_species_paralog: SEPT3	1
p10	q10	+/+	ENSP00000328800	WBP2NL	q10	q10	323.1	22	40745259	40748317	1	4	50.2%	92.4%	510	0.78 / 0.01 = 78	within_species_paralog: WBP2NL	1
p11	q11	+/+	ENSP00000355349	NAGA	q11	q11	893.5	22	40786232	40794513	-1	8	97.8%	88.6%	1401	0.59 / 0.01 = 59	within_species_paralog: NAGA	1
p12	q12	+/+	ENSP00000312753	FAM109B	q12	q12	498	22	40803244	40804020	1	1	100%	100%	777	0.72 / 0.01 = 72	within_species_paralog: FAM109B	1
p13	q13	+/+	ENSP00000327467	C22orf32	q13	q13	186	22	40805737	40807991	1	2	88.8%	97%	300	1 / 0.01 = 100	noComparaHits: C22orf32	1
p14	q14	+/+	ENSP00000330937	NDUFA6	q14	q14	324.1	22	40812136	40816772	-1	3	100%	96.3%	486	1 / 0.01 = 100	noComparaHits: NDUFA6	1

region 2 (region 1 for Mmul)

syntenyRegion: Macaca_mulatta.glob01.10.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 10 -i 85623310:86063311 -f 33e4 some_geneID_to_be_selected
scoreRatio_sum=161.03 log_scoreRatio_sum=25.76 focal_scoreRatio_sum=35.93
AlnScore=10327 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Macaca_mulatta

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000347401	NHP2L1	q1	q1	147	10	85623310	85623570	-1	1	68%	100%	261	0.3 / 0.35 = 0.86	noComparaHits:	2
p2	q2	+/+	ENSP00000300398	NP_689726.3	q2	q2	1953.8	10	85647390	85749025	1	22	78.8%	92.5%	3213	1 / 0.13 = 7.69	ortholog_one2one: NP_689726.3 ortholog_one2many: ENSMMUG00000031012	1
p3	q3	+/+	ENSP00000255784	CCDC134	q3	q3	276.8	10	85762621	85766542	1	3	63.8%	87.8%	441	1 / 0.19 = 5.26	ortholog_one2one: CCDC134	1
p4	q4	+/+	ENSP00000354476	SREBF2	q4	q4	1852.9	10	85821766	85863757	1	15	84.4%	91.4%	3015	0.77 / 0.1 = 7.7	ortholog_one2one: SREBF2	1
p4	q4	+/+	ENSP00000327934	Q8N8F0_HUMAN	noMatch	q4	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p5	---	gapq	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	q5	+/+	ENSP00000291232	TNFRSF13C	q5	q5	218.8	10	85883490	85884971	-1	3	100%	80.2%	621	1 / 0.05 = 20	ortholog_one2one: TNFRSF13C	1
p7	q6	+/+	ENSP00000215980	CENPM	q6	q6	189.8	10	85903456	85906965	-1	3	64.4%	74.2%	396	1 / 0.4 = 2.5	ortholog_one2one: CENPM	1
p8	---	gapq	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q7	+/+	ENSP00000332866	SEPT3	q7	q7	666.5	10	85944779	85958167	1	8	93.3%	91.9%	1026	0.49 / 0.01 = 49	ortholog_one2one: SEPT3	1
p10	q8	+/+	ENSP00000328800	WBP2NL	q8	q8	297.4	10	85985108	85993649	1	4	50.2%	85.3%	510	0.78 / 0.07 = 11.14	ortholog_one2one: WBP2NL	1
p11	q9	+/+	ENSP00000355349	NAGA	q9	q9	785.7	10	86031454	86040392	-1	7	89.1%	84.5%	1314	0.59 / 0.12 = 4.92	ortholog_one2one: NAGA	1
p12	q10	+/+	ENSP00000312753	FAM109B	q10	q10	459	10	86045748	86046524	1	1	100%	93.8%	777	0.72 / 0.07 = 10.29	ortholog_one2one: FAM109B	1
p13	q11	+/+	ENSP00000327467	C22orf32	q11	q11	177.2	10	86048253	86050845	1	2	88.8%	89.3%	309	1 / 0.04 = 25	ortholog_one2one: C22orf32	1
p14	q12	+/+	ENSP00000330937	NDUFA6	q12	q12	302	10	86054698	86063311	-1	3	100%	93.1%	477	1 / 0.06 = 16.67	ortholog_one2one: NDUFA6	1

region 3 (region 1 for Cfam)

syntenyRegion: Canis_familiaris.glob01.10.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 10 -i 26347775:26694189 -f 26e4 some_geneID_to_be_selected
scoreRatio_sum=82.71 log_scoreRatio_sum=18.94 focal_scoreRatio_sum=24.42
AlnScore=9002 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Canis_familiaris

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000347401	NHP2L1	q1	q1	227.5	10	26692968	26694189	1	2	99.2%	97.7%	390	0.3 / 0.01 = 30	ortholog_one2one: 609886	1
p2	q2	+/+	ENSP00000300398	NP_689726.3	q2	q2	1934.7	10	26598325	26670444	-1	24	87.4%	79.7%	3690	1 / 0.14 = 7.14	ortholog_one2one: NP_689726.3	1
p3	q3	+/+	ENSP00000255784	CCDC134	q3	q3	260.3	10	26590778	26593513	-1	3	56.3%	87.1%	420	1 / 0.24 = 4.17	ortholog_one2one: 609694	1
p4	q4	+/+	ENSP00000354476	SREBF2	q4	q4	1836.7	10	26516522	26577210	-1	17	92.8%	83.7%	3384	0.77 / 0.11 = 7	ortholog_one2one: 481228	1
p4	q4	+/+	ENSP00000327934	Q8N8F0_HUMAN	noMatch	q4	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p5	---	gapq	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	q5	+/+	ENSP00000215980	CENPM	q5	q5	283.9	10	26477647	26488820	1	5	95.6%	77.4%	570	1 / 0.1 = 10	ortholog_one2one: 609678	1
p8	---	gapq	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q6	+/+	ENSP00000332866	SEPT3	q6	q6	601.5	10	26437686	26449825	-1	7	82.6%	94.3%	894	0.49 / 0.1 = 4.9	ortholog_one2one: 481227	1
p10	q7	+/+	ENSP00000328800	WBP2NL	q7	q7	179.9	10	26417421	26418465	-1	3	38.2%	69.9%	369	0.78 / 0.44 = 1.77	ortholog_one2one: WBP2NL	1
p11	q8	+/+	ENSP00000355349	NAGA	q8	q8	775.2	10	26369496	26375748	1	8	98.8%	78.6%	1317	0.59 / 0.13 = 4.54	ortholog_one2one: 481226	1
p12	q9	+/+	ENSP00000312753	FAM109B	q9	q9	363	10	26362743	26363507	-1	1	99.2%	78.6%	765	0.72 / 0.27 = 2.67	noComparaHits:	1
p13	q10	+/+	ENSP00000327467	C22orf32	q10	q10	157.9	10	26358944	26360643	-1	2	94.4%	87.2%	327	1 / 0.15 = 6.67	ortholog_one2one: 609643	1
p14	q11	+/+	ENSP00000330937	NDUFA6	q11	q11	237.7	10	26347775	26356193	1	3	100%	78.8%	447	1 / 0.26 = 3.85	ortholog_one2one: 474483	1

region 4 (region 1 for Ggal)

syntenyRegion: Gallus_gallus.glob01.1.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 1 -i 51302418:51433031 -f 98e3 some_geneID_to_be_selected
scoreRatio_sum=47.71 log_scoreRatio_sum=8.89 focal_scoreRatio_sum=14.19
AlnScore=5522 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Gallus_gallus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000347401	NHP2L1	q1	q1	232.1	1	51431916	51433031	1	2	99.2%	88.8%	402	0.3 / 0.01 = 30	ortholog_one2one: NHP2L1	1
p2	q2	+/+	ENSP00000300398	NP_689726.3	q2	q2	553.1	1	51396663	51425316	-1	8	38.7%	54.4%	1581	1 / 0.75 = 1.33	ortholog_one2one: NP_689726.3	1
p3	q3	+/+	ENSP00000255784	CCDC134	q3	q3	261	1	51389704	51390703	-1	3	71.6%	57.9%	657	1 / 0.23 = 4.35	ortholog_one2one: 417984	1
p4	q4	+/+	ENSP00000354476	SREBF2	q4	q4	1531.3	1	51370206	51385872	-1	15	78.9%	76.6%	3069	0.77 / 0.26 = 2.96	ortholog_one2one: Q9I8H7_CHICK	1
p4	q4	+/+	ENSP00000327934	Q8N8F0_HUMAN	noMatch	q4	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p5	---	gapq	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q5	+/+	ENSP00000332866	SEPT3	q5	q5	502.8	1	51328295	51335085	-1	6	71%	90.6%	768	0.49 / 0.25 = 1.96	ortholog_one2one: 427899	1
p10	q6	+/+	ENSP00000328800	WBP2NL	q6	q6	105.1	1	51322448	51323546	-1	2	30.1%	55.1%	288	0.78 / 0.67 = 1.16	ortholog_one2one: Q5F3Y9_CHICK	1
p11	q7	+/+	ENSP00000355349	NAGA	q7	q7	587.2	1	51312922	51315659	1	6	92.2%	62.3%	1335	0.59 / 0.34 = 1.74	ortholog_one2one: NAGAB_CHICK	1
p12	q8	+/+	ENSP00000312753	FAM109B	q8	q8	193	1	51310680	51311393	-1	1	91.9%	52.7%	714	0.72 / 0.61 = 1.18	ortholog_one2one: 427898	1
p13	---	gapq	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	q9	+/+	ENSP00000330937	NDUFA6	q9	q9	214.4	1	51302418	51303786	1	3	72.7%	83.3%	342	1 / 0.33 = 3.03	ortholog_one2one: NDUFA6	1

region 5 (region 2 for Cfam)

syntenyRegion: Canis_familiaris.glob02.10.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 10 -i 37295114:37407905 -f 85e3 some_geneID_to_be_selected
scoreRatio_sum=4.97 log_scoreRatio_sum=1.07 focal_scoreRatio_sum=1.19
AlnScore=1179 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Canis_familiaris

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000347401	NHP2L1	q1	q1	211	10	37295114	37295473	-1	1	93.8%	94.2%	360	0.3 / 0.07 = 4.29	noComparaHits:	3
p2	---	gapq	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gapq	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gapq	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gapq	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gapq	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q2	+/+	ENSP00000332866	SEPT3	q2	q2	182.2	10	37395972	37407905	1	3	53.6%	46.2%	543	0.49 / 0.72 = 0.68	between_species_paralog: SEPT10	8
p10	---	gape	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 6 (region 3 for Cfam)

syntenyRegion: Canis_familiaris.glob03.X.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l X -i 102573493:102573876 -f 29e1 some_geneID_to_be_selected
scoreRatio_sum=15 log_scoreRatio_sum=2.71 focal_scoreRatio_sum=3.75
AlnScore=975 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Canis_familiaris

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000347401	NHP2L1	q1	q1	223	X	102573493	102573876	-1	1	100%	98.4%	384	0.3 / 0.02 = 15	noComparaHits: ENSCAFG00000018660	2
p2	---	gape	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gape	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000332866	SEPT3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 7 (region 1 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob04.contig_11123.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_11123 -i 74912:75605 -f 52e1 some_geneID_to_be_selected
scoreRatio_sum=10 log_scoreRatio_sum=2.3 focal_scoreRatio_sum=2.5
AlnScore=967 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000347401	NHP2L1	q1	q1	221.2	contig_11123	74912	75605	-1	2	99.2%	86.6%	402	0.3 / 0.03 = 10	noComparaHits: ENSGACG00000009568	1
p2	---	gape	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gape	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000332866	SEPT3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 8 (region 4 for Cfam)

syntenyRegion: Canis_familiaris.glob05.24.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 24 -i 35901840:35902261 -f 32e1 some_geneID_to_be_selected
scoreRatio_sum=2.5 log_scoreRatio_sum=0.92 focal_scoreRatio_sum=0.63
AlnScore=875 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Canis_familiaris

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000347401	NHP2L1	q1	q1	200.1	24	35901840	35902261	-1	2	100%	86%	387	0.3 / 0.12 = 2.5	ortholog_one2many: ENSCAFG00000009719	4
p2	---	gape	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gape	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000332866	SEPT3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 9 (region 2 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob02.contig_8218.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_8218 -i 34510:81958 -f 36e3 some_geneID_to_be_selected
scoreRatio_sum=3.77 log_scoreRatio_sum=1.33 focal_scoreRatio_sum=0.63
AlnScore=863 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000347401	NHP2L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q1	+/+	ENSP00000332866	SEPT3	q1	q1	582.6	contig_8218	77831	81958	1	8	87.2%	69%	1182	0.49 / 0.13 = 3.77	noComparaHits: ENSGACG00000015988	1
p10	---	gape	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 10 (region 2 for Mmul)

syntenyRegion: Macaca_mulatta.glob03.1.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 1 -i 127577156:128061284 -f 36e4 some_geneID_to_be_selected
scoreRatio_sum=1 log_scoreRatio_sum=0 focal_scoreRatio_sum=0.25
AlnScore=699 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Macaca_mulatta

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
---	q1	gaps	-	-	-	q1	-	-	-	-	-	-	-	-	-	-	-	-
---	q2	gaps	-	-	-	q2	-	-	-	-	-	-	-	-	-	-	-	-
p1	q3	+/+	ENSP00000347401	NHP2L1	q3	q3	160	1	127577156	127577524	1	1	95.3%	73%	369	0.3 / 0.3 = 1	noComparaHits:	1
p2	---	gape	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gape	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000332866	SEPT3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 11 (region 2 for Hsap)

syntenyRegion: Homo_sapiens.glob03.5.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 5 -i 96810875:96811201 -f 25e1 some_geneID_to_be_selected
scoreRatio_sum=1 log_scoreRatio_sum=0 focal_scoreRatio_sum=0.25
AlnScore=699 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Homo_sapiens

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000347401	NHP2L1	q1	q1	160	5	96810875	96811201	-1	1	85.2%	78.9%	327	0.3 / 0.3 = 1	noComparaHits:	2
p2	---	gape	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gape	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000332866	SEPT3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 12 (region 5 for Cfam)

syntenyRegion: Canis_familiaris.glob08.X.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l X -i 86848501:86848843 -f 26e1 some_geneID_to_be_selected
scoreRatio_sum=0.91 log_scoreRatio_sum=-0.08 focal_scoreRatio_sum=0.23
AlnScore=665 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Canis_familiaris

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000347401	NHP2L1	q1	q1	152.2	X	86848501	86848843	-1	2	87.5%	75.9%	336	0.3 / 0.33 = 0.91	noComparaHits:	5
p2	---	gape	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gape	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000332866	SEPT3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 13 (region 3 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob05.contig_8279.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_8279 -i 522:2619 -f 16e2 some_geneID_to_be_selected
scoreRatio_sum=1.79 log_scoreRatio_sum=0.58 focal_scoreRatio_sum=0.22
AlnScore=661 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000347401	NHP2L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000332866	SEPT3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	q1	+/+	ENSP00000355349	NAGA	q1	q1	591.2	contig_8279	522	2619	1	7	94.4%	59.4%	1323	0.59 / 0.33 = 1.79	noComparaHits: ENSGACG00000013389	1
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 14 (region 4 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob07.contig_9740.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_9740 -i 21958:27822 -f 44e2 some_geneID_to_be_selected
scoreRatio_sum=1.51 log_scoreRatio_sum=0.41 focal_scoreRatio_sum=0.19
AlnScore=606 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000347401	NHP2L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000332866	SEPT3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	q1	+/+	ENSP00000355349	NAGA	q1	q1	542.1	contig_9740	21958	27822	1	7	96.4%	53.2%	1404	0.59 / 0.39 = 1.51	noComparaHits: ENSGACG00000014083	2
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 15 (region 2 for Ggal)

syntenyRegion: Gallus_gallus.glob04.18.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 18 -i 3800336:3808951 -f 65e2 some_geneID_to_be_selected
scoreRatio_sum=1.02 log_scoreRatio_sum=0.02 focal_scoreRatio_sum=0.17
AlnScore=519 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Gallus_gallus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000347401	NHP2L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q1	+/+	ENSP00000332866	SEPT3	q1	q1	350.4	18	3800336	3808951	1	5	62.9%	70.3%	654	0.49 / 0.48 = 1.02	between_species_paralog: Q5F3T2_CHICK	2
p10	---	gape	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 16 (region 5 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob08.contig_4216.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_4216 -i 4884:6155 -f 95e1 some_geneID_to_be_selected
scoreRatio_sum=2 log_scoreRatio_sum=0.69 focal_scoreRatio_sum=1
AlnScore=495 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000347401	NHP2L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q1	+/+	ENSP00000255784	CCDC134	q1	q1	169.9	contig_4216	4884	6155	-1	2	44.5%	69.6%	306	1 / 0.5 = 2	noComparaHits: ENSGACG00000007268	1
p4	---	gape	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000332866	SEPT3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 17 (region 3 for Mmul)

syntenyRegion: Macaca_mulatta.glob05.11.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 11 -i 134176583:134176965 -f 29e1 some_geneID_to_be_selected
scoreRatio_sum=0.59 log_scoreRatio_sum=-0.52 focal_scoreRatio_sum=0.15
AlnScore=481 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Macaca_mulatta

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000347401	NHP2L1	q1	q1	110	11	134176583	134176900	1	1	80.5%	61.7%	318	0.3 / 0.51 = 0.59	noComparaHits:	5
p2	---	gape	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gape	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000332866	SEPT3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 18 (region 6 for Cfam)

syntenyRegion: Canis_familiaris.glob09.6.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 6 -i 39676207:39683553 -f 55e2 some_geneID_to_be_selected
scoreRatio_sum=0.94 log_scoreRatio_sum=-0.05 focal_scoreRatio_sum=0.16
AlnScore=477 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Canis_familiaris

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000347401	NHP2L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q1	+/+	ENSP00000332866	SEPT3	q1	q1	321.8	6	39676207	39683553	1	5	73.9%	48.9%	939	0.49 / 0.52 = 0.94	between_species_paralog: NP_653206.1	3
p10	---	gape	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 19 (region 3 for Hsap)

syntenyRegion: Homo_sapiens.glob09.12.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 12 -i 131986645:131987027 -f 29e1 some_geneID_to_be_selected
scoreRatio_sum=0.56 log_scoreRatio_sum=-0.57 focal_scoreRatio_sum=0.14
AlnScore=459 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Homo_sapiens

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000347401	NHP2L1	q1	q1	105	12	131986645	131986962	1	1	80.5%	60.7%	318	0.3 / 0.54 = 0.56	noComparaHits:	3
p2	---	gape	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gape	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000332866	SEPT3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 20 (region 4 for Mmul)

syntenyRegion: Macaca_mulatta.glob10.X.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l X -i 100116244:100125581 -f 70e2 some_geneID_to_be_selected
scoreRatio_sum=1 log_scoreRatio_sum=0 focal_scoreRatio_sum=0.13
AlnScore=408 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Macaca_mulatta

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000347401	NHP2L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000332866	SEPT3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	q1	+/+	ENSP00000355349	NAGA	q1	q1	364.8	X	100116244	100125581	-1	5	74.9%	53%	1011	0.59 / 0.59 = 1	between_species_paralog: GLA	2
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 21 (region 3 for Ggal)

syntenyRegion: Gallus_gallus.glob03.4.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 4 -i 1999508:2005441 -f 45e2 some_geneID_to_be_selected
scoreRatio_sum=0.94 log_scoreRatio_sum=-0.05 focal_scoreRatio_sum=0.12
AlnScore=368 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Gallus_gallus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000347401	NHP2L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000332866	SEPT3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	q1	+/+	ENSP00000355349	NAGA	q1	q1	329.4	4	1999508	2005441	1	4	63%	52.6%	864	0.59 / 0.63 = 0.94	between_species_paralog: 422188	2
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 22 (region 4 for Hsap)

syntenyRegion: Homo_sapiens.glob04.7.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 7 -i 151695662:151696310 -f 49e1 some_geneID_to_be_selected
scoreRatio_sum=0.74 log_scoreRatio_sum=-0.29 focal_scoreRatio_sum=0.12
AlnScore=338 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Homo_sapiens

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000347401	NHP2L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q1	+/+	ENSP00000332866	SEPT3	q1	q1	228.6	7	151695662	151696310	1	2	63.5%	49.3%	648	0.49 / 0.66 = 0.74	noComparaHits: MLL3	4
p10	---	gape	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 23 (region 6 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob01.contig_4215.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_4215 -i 18120:24716 -f 49e2 some_geneID_to_be_selected
scoreRatio_sum=1.17 log_scoreRatio_sum=0.16 focal_scoreRatio_sum=1.17
AlnScore=333 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000347401	NHP2L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	q1	+/+	ENSP00000354476	SREBF2	q1	q1	691.7	contig_4215	18120	24716	-1	9	55%	49.6%	2229	0.77 / 0.66 = 1.17	noComparaHits: ENSGACG00000021431 ; ENSGACG00000007259	1
p4	q1	+/+	ENSP00000327934	Q8N8F0_HUMAN	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p5	---	gape	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000332866	SEPT3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 24 (region 7 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob03.contig_2001.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_2001 -i 83219:83995 -f 58e1 some_geneID_to_be_selected
scoreRatio_sum=1.09 log_scoreRatio_sum=0.09 focal_scoreRatio_sum=0.12
AlnScore=331 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000347401	NHP2L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000332866	SEPT3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000312753	FAM109B	q1	q1	165	contig_2001	83219	83995	-1	1	93.4%	43.8%	777	0.72 / 0.66 = 1.09	noComparaHits: ENSGACG00000006284	1
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 25 (region 8 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob06.contig_4389.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_4389 -i 128552:135308 -f 51e2 some_geneID_to_be_selected
scoreRatio_sum=1.13 log_scoreRatio_sum=0.12 focal_scoreRatio_sum=1.13
AlnScore=314 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000347401	NHP2L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	q1	+/+	ENSP00000354476	SREBF2	q1	q1	652.2	contig_4389	128552	135308	1	8	61.7%	46.1%	2268	0.77 / 0.68 = 1.13	noComparaHits: ENSGACG00000012064	2
p4	q1	+/+	ENSP00000327934	Q8N8F0_HUMAN	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p5	---	gape	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000332866	SEPT3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 26 (region 5 for Hsap)

syntenyRegion: Homo_sapiens.glob02.8.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 8 -i 57552312:57553100 -f 59e1 some_geneID_to_be_selected
scoreRatio_sum=0.72 log_scoreRatio_sum=-0.32 focal_scoreRatio_sum=0.12
AlnScore=312 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Homo_sapiens

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000347401	NHP2L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q1	+/+	ENSP00000332866	SEPT3	q1	q1	211	8	57552312	57553100	-1	1	78.3%	43.5%	789	0.49 / 0.68 = 0.72	noComparaHits:	5
p10	---	gape	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 27 (region 4 for Ggal)

syntenyRegion: Gallus_gallus.glob10.15.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 15 -i 724373:782404 -f 44e3 some_geneID_to_be_selected
scoreRatio_sum=0.72 log_scoreRatio_sum=-0.32 focal_scoreRatio_sum=0.12
AlnScore=307 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Gallus_gallus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000347401	NHP2L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q1	+/+	ENSP00000332866	SEPT3	q1	q1	214.5	15	724373	733262	1	4	50.7%	53.3%	543	0.49 / 0.68 = 0.72	between_species_paralog: Q5ZMH1_CHICK	3
p10	---	gapq	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q2	gape	-	-	-	q2	-	-	-	-	-	-	-	-	-	-	-	-

region 28 (region 5 for Ggal)

syntenyRegion: Gallus_gallus.glob02.15.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 15 -i 6149980:6150675 -f 52e1 some_geneID_to_be_selected
scoreRatio_sum=1.04 log_scoreRatio_sum=0.04 focal_scoreRatio_sum=0.12
AlnScore=301 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Gallus_gallus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000347401	NHP2L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000332866	SEPT3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000312753	FAM109B	q1	q1	150	15	6149980	6150675	-1	1	94.6%	42.6%	696	0.72 / 0.69 = 1.04	between_species_paralog: 427697	2
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 29 (region 9 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob10.contig_5909.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_5909 -i 36857:38584 -f 13e2 some_geneID_to_be_selected
scoreRatio_sum=0.7 log_scoreRatio_sum=-0.35 focal_scoreRatio_sum=0.12
AlnScore=298 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000347401	NHP2L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q1	+/+	ENSP00000332866	SEPT3	q1	q1	201.1	contig_5909	36857	38584	-1	3	73.6%	35.3%	1047	0.49 / 0.7 = 0.7	noComparaHits: ENSGACG00000018181	10
p10	---	gape	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 30 (region 6 for Hsap)

syntenyRegion: Homo_sapiens.glob05.22.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 22 -i 18087637:18160392 -f 55e3 some_geneID_to_be_selected
scoreRatio_sum=0.7 log_scoreRatio_sum=-0.35 focal_scoreRatio_sum=0.12
AlnScore=297 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Homo_sapiens

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000347401	NHP2L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q1	+/+	ENSP00000332866	SEPT3	q1	q1	201	22	18087637	18089457	1	3	53.3%	47.7%	639	0.49 / 0.7 = 0.7	within_species_paralog: SEPT5	7
p10	---	gape	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 31 (region 5 for Mmul)

syntenyRegion: Macaca_mulatta.glob08.15.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 15 -i 37624124:37624895 -f 58e1 some_geneID_to_be_selected
scoreRatio_sum=0.7 log_scoreRatio_sum=-0.35 focal_scoreRatio_sum=0.12
AlnScore=293 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Macaca_mulatta

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000347401	NHP2L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q1	+/+	ENSP00000332866	SEPT3	q1	q1	198.2	15	37624124	37624895	-1	2	80.6%	38.4%	717	0.49 / 0.7 = 0.7	between_species_paralog: ENSMMUG00000006807	6
p10	---	gape	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 32 (region 6 for Mmul)

syntenyRegion: Macaca_mulatta.glob09.10.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 10 -i 63768564:63770385 -f 14e2 some_geneID_to_be_selected
scoreRatio_sum=0.7 log_scoreRatio_sum=-0.35 focal_scoreRatio_sum=0.12
AlnScore=291 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Macaca_mulatta

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000347401	NHP2L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q1	+/+	ENSP00000332866	SEPT3	q1	q1	196.8	10	63768564	63770385	1	3	53.3%	46.7%	639	0.49 / 0.7 = 0.7	between_species_paralog: SEPT5	7
p10	---	gape	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 33 (region 6 for Ggal)

syntenyRegion: Gallus_gallus.glob06.4.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 4 -i 51161077:51172153 -f 83e2 some_geneID_to_be_selected
scoreRatio_sum=0.68 log_scoreRatio_sum=-0.38 focal_scoreRatio_sum=0.11
AlnScore=277 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Gallus_gallus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000347401	NHP2L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q1	+/+	ENSP00000332866	SEPT3	q1	q1	187.2	4	51161077	51172153	-1	3	54.2%	46.1%	558	0.49 / 0.72 = 0.68	between_species_paralog: SEPT11	6
p10	---	gape	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 34 (region 7 for Mmul)

syntenyRegion: Macaca_mulatta.glob04.11.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 11 -i 112301009:112301401 -f 29e1 some_geneID_to_be_selected
scoreRatio_sum=1 log_scoreRatio_sum=0 focal_scoreRatio_sum=0.11
AlnScore=275 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Macaca_mulatta

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000347401	NHP2L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000332866	SEPT3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000312753	FAM109B	q1	q1	137	11	112301009	112301401	-1	1	53.7%	55.4%	393	0.72 / 0.72 = 1	between_species_paralog: FAM109A	2
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 35 (region 7 for Hsap)

syntenyRegion: Homo_sapiens.glob06.12.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 12 -i 110285222:110285614 -f 29e1 some_geneID_to_be_selected
scoreRatio_sum=1 log_scoreRatio_sum=0 focal_scoreRatio_sum=0.11
AlnScore=271 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Homo_sapiens

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000347401	NHP2L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000332866	SEPT3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000312753	FAM109B	q1	q1	135	12	110285222	110285614	-1	1	53.7%	54.7%	393	0.72 / 0.72 = 1	within_species_paralog: FAM109A	2
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 36 (region 7 for Cfam)

syntenyRegion: Canis_familiaris.glob06.26.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 26 -i 12023153:12023533 -f 29e1 some_geneID_to_be_selected
scoreRatio_sum=0.99 log_scoreRatio_sum=0 focal_scoreRatio_sum=0.11
AlnScore=269 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Canis_familiaris

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000347401	NHP2L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000332866	SEPT3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000312753	FAM109B	q1	q1	134	26	12023153	12023533	-1	1	52.1%	57%	381	0.72 / 0.73 = 0.99	ortholog_one2many: 486268	2
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 37 (region 7 for Ggal)

syntenyRegion: Gallus_gallus.glob09.1.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 1 -i 141061311:141069115 -f 59e2 some_geneID_to_be_selected
scoreRatio_sum=0.67 log_scoreRatio_sum=-0.39 focal_scoreRatio_sum=0.11
AlnScore=268 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Gallus_gallus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000347401	NHP2L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q1	+/+	ENSP00000332866	SEPT3	q1	q1	181.4	1	141061311	141069115	-1	3	52.8%	47%	534	0.49 / 0.73 = 0.67	between_species_paralog: 418732	7
p10	---	gape	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 38 (region 8 for Hsap)

syntenyRegion: Homo_sapiens.glob07.9.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 9 -i 100409227:100409867 -f 48e1 some_geneID_to_be_selected
scoreRatio_sum=0.67 log_scoreRatio_sum=-0.39 focal_scoreRatio_sum=0.11
AlnScore=265 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Homo_sapiens

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000347401	NHP2L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q1	+/+	ENSP00000332866	SEPT3	q1	q1	179.2	9	100409227	100409867	1	2	55.1%	44.1%	558	0.49 / 0.73 = 0.67	noComparaHits: GABBR2	noData
p10	---	gape	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 39 (region 8 for Ggal)

syntenyRegion: Gallus_gallus.glob08.13.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 13 -i 17576574:17585447 -f 67e2 some_geneID_to_be_selected
scoreRatio_sum=0.67 log_scoreRatio_sum=-0.39 focal_scoreRatio_sum=0.11
AlnScore=263 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Gallus_gallus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000347401	NHP2L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q1	+/+	ENSP00000332866	SEPT3	q1	q1	177.9	13	17576574	17585447	-1	3	52.5%	45.1%	531	0.49 / 0.73 = 0.67	between_species_paralog: 416333	8
p10	---	gape	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 40 (region 9 for Ggal)

syntenyRegion: Gallus_gallus.glob07.4.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 4 -i 16648292:16655179 -f 52e2 some_geneID_to_be_selected
scoreRatio_sum=0.67 log_scoreRatio_sum=-0.39 focal_scoreRatio_sum=0.11
AlnScore=262 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Gallus_gallus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000347401	NHP2L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q1	+/+	ENSP00000332866	SEPT3	q1	q1	176.8	4	16648292	16655179	1	3	54.8%	45.5%	558	0.49 / 0.73 = 0.67	between_species_paralog: Q5ZM42_CHICK	9
p10	---	gape	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 41 (region 8 for Cfam)

syntenyRegion: Canis_familiaris.glob04.32.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 32 -i 27989317:27990155 -f 63e1 some_geneID_to_be_selected
scoreRatio_sum=0.66 log_scoreRatio_sum=-0.41 focal_scoreRatio_sum=0.11
AlnScore=257 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Canis_familiaris

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000347401	NHP2L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q1	+/+	ENSP00000332866	SEPT3	q1	q1	174	32	27989317	27989844	1	1	51.3%	48.6%	528	0.49 / 0.74 = 0.66	noComparaHits: ENSCAFG00000010861	10
p10	---	gape	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 42 (region 8 for Mmul)

syntenyRegion: Macaca_mulatta.glob02.3.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 3 -i 189312557:189313190 -f 48e1 some_geneID_to_be_selected
scoreRatio_sum=0.66 log_scoreRatio_sum=-0.41 focal_scoreRatio_sum=0.11
AlnScore=253 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Macaca_mulatta

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000347401	NHP2L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q1	+/+	ENSP00000332866	SEPT3	q1	q1	171	3	189312696	189313190	1	1	48.4%	50.3%	495	0.49 / 0.74 = 0.66	between_species_paralog: ENSMMUG00000007222	noData
p10	---	gape	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 43 (region 9 for Hsap)

syntenyRegion: Homo_sapiens.glob08.16.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 16 -i 30275249:30300294 -f 19e3 some_geneID_to_be_selected
scoreRatio_sum=0.65 log_scoreRatio_sum=-0.42 focal_scoreRatio_sum=0.11
AlnScore=240 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Homo_sapiens

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000347401	NHP2L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q1	+/+	ENSP00000332866	SEPT3	q1	q1	162.5	16	30297884	30300294	-1	3	36.5%	55.6%	375	0.49 / 0.75 = 0.65	within_species_paralog: SEPT1	noData
p10	---	gape	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 44 (region 9 for Cfam)

syntenyRegion: Canis_familiaris.glob07.6.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 6 -i 20729320:20748791 -f 15e3 some_geneID_to_be_selected
scoreRatio_sum=0.64 log_scoreRatio_sum=-0.44 focal_scoreRatio_sum=0.11
AlnScore=238 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Canis_familiaris

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000347401	NHP2L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q1	+/+	ENSP00000332866	SEPT3	q1	q1	161	6	20729320	20731187	1	3	36.8%	54.3%	384	0.49 / 0.76 = 0.64	between_species_paralog: 489900	noData
p10	---	gape	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 45 (region 10 for Hsap)

syntenyRegion: Homo_sapiens.glob10.19.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 19 -i 58967767:58968361 -f 45e1 some_geneID_to_be_selected
scoreRatio_sum=0.64 log_scoreRatio_sum=-0.44 focal_scoreRatio_sum=0.11
AlnScore=235 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Homo_sapiens

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000347401	NHP2L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q1	+/+	ENSP00000332866	SEPT3	q1	q1	159.1	19	58967767	58968361	-1	2	56.2%	41.1%	585	0.49 / 0.76 = 0.64	noComparaHits:	noData
p10	---	gape	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 46 (region 10 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob09.contig_628.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_628 -i 122373:123379 -f 76e1 some_geneID_to_be_selected
scoreRatio_sum=0.63 log_scoreRatio_sum=-0.45 focal_scoreRatio_sum=0.11
AlnScore=218 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000347401	NHP2L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q1	+/+	ENSP00000332866	SEPT3	q1	q1	147.5	contig_628	122373	123379	-1	2	36.2%	45.5%	459	0.49 / 0.78 = 0.63	noComparaHits: ENSGACG00000020488	noData
p10	---	gape	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 47 (region 9 for Mmul)

syntenyRegion: Macaca_mulatta.glob06.16.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 16 -i 17717122:17724076 -f 52e2 some_geneID_to_be_selected
scoreRatio_sum=0.99 log_scoreRatio_sum=0 focal_scoreRatio_sum=0.99
AlnScore=216 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Macaca_mulatta

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000347401	NHP2L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	q1	+/+	ENSP00000354476	SREBF2	q1	q1	448.8	16	17717122	17724076	-1	6	40.8%	50.9%	1506	0.77 / 0.78 = 0.99	between_species_paralog: SREBF1	2
p4	q1	+/+	ENSP00000327934	Q8N8F0_HUMAN	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p5	---	gape	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000332866	SEPT3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 48 (region 10 for Mmul)

syntenyRegion: Macaca_mulatta.glob07.7.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 7 -i 98116277:98116708 -f 32e1 some_geneID_to_be_selected
scoreRatio_sum=0.58 log_scoreRatio_sum=-0.53 focal_scoreRatio_sum=0.1
AlnScore=151 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Macaca_mulatta

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000347401	NHP2L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q1	+/+	ENSP00000332866	SEPT3	q1	q1	102	7	98116277	98116708	-1	1	42.3%	36.7%	432	0.49 / 0.84 = 0.58	noComparaHits: KIAA0391	noData
p10	---	gape	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 49 (region 10 for Cfam)

syntenyRegion: Canis_familiaris.glob10.7.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 7 -i 81393240:81393593 -f 27e1 some_geneID_to_be_selected
scoreRatio_sum=0.58 log_scoreRatio_sum=-0.53 focal_scoreRatio_sum=0.1
AlnScore=149 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Canis_familiaris

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000347401	NHP2L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000354476	SREBF2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000327934	Q8N8F0_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q1	+/+	ENSP00000332866	SEPT3	q1	q1	101	7	81393240	81393593	-1	1	35.9%	41.9%	354	0.49 / 0.85 = 0.58	noComparaHits:	noData
p10	---	gape	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 50 (region 10 for Ggal)

syntenyRegion: Gallus_gallus.glob05.14.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 14 -i 4933487:4934917 -f 11e2 some_geneID_to_be_selected
scoreRatio_sum=0.86 log_scoreRatio_sum=-0.14 focal_scoreRatio_sum=0.86
AlnScore=97 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000354476 (contained in p4)
TargetGenome=Gallus_gallus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000347401	NHP2L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000300398	NP_689726.3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000255784	CCDC134	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	q1	+/+	ENSP00000354476	SREBF2	q1	q1	203.4	14	4933487	4934917	-1	3	16.2%	58.8%	558	0.77 / 0.9 = 0.86	noComparaHits: 416506	2
p4	q1	+/+	ENSP00000327934	Q8N8F0_HUMAN	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p5	---	gape	ENSP00000370755	Q5H8V2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000291232	TNFRSF13C	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000215980	CENPM	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000370752	Q6ICG7_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000332866	SEPT3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000328800	WBP2NL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000355349	NAGA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000312753	FAM109B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000327467	C22orf32	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000330937	NDUFA6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

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Overview on processed synteny regions for SREBF2_ENSG00000198911_2e5.protein.info

Data table for reference protein loci

Parameter used for the loci-alignments