PBX2_ENSG00000204304_2e5.protein.info Alignment Results

Rank	AlnScore	RatioSum	logRatioSum	focalRatioSum	TargetGenome	chr	startPos	endPos	hitsCount	queryCov	meanIdentity	ori	score	compara
1	12868	24.17	2.48	10.36	Homo_sapiens	6	32262140	32265670	8	100%	85.5%	-1	705.5	within_species_paralog: PBX2
2	12807	20.83	2.01	4.83	Homo_sapiens	c6_COX	32249890	32252303	7	83%	88.1%	-1	652.2	noComparaHits: PBX2_HUMAN
3	11776	8.02	-13.02	3.2	Macaca_mulatta	4	31808327	31811700	8	82.1%	84.1%	-1	669.9	ortholog_one2many: ENSMMUG00000018456
4	10425	9.91	-1.82	3.56	Homo_sapiens	c6_QBL	32254635	32257049	7	83%	82.3%	-1	654.3	noComparaHits: PBX2_HUMAN
5	9187	18.78	-15.16	8.59	Canis_familiaris	12	4581926	4585201	9	88.6%	93.4%	-1	772.3	ortholog_one2many: 607695
6	971	0.5	-0.68	0.17	Homo_sapiens	8
7	891	0.7	-0.35	0.7	Homo_sapiens	3	144378006	144379148	1	88.6%	97.6%	1	629	within_species_paralog: Q6NW39_HUMAN
8	628	0.19	-1.65	0.19	Gasterosteus_aculeatus	contig_1256	55021	58740	5	72.1%	72.7%	-1	443.7	noComparaHits: ENSGACG00000013077
9	596	0.18	-1.7	0.18	Gallus_gallus	8	5436132	5442660	4	57%	83%	-1	421	between_species_paralog: Q9IB15_CHICK
10	499	0.23	-4.33	0.14	Gallus_gallus	17	10528437	10535046	3	45.3%	84.6%	1	333	between_species_paralog: Q5ZLI3_CHICK
11	420	0.16	-1.82	0.02	Macaca_mulatta	15
12	371	0.15	-1.89	0.02	Homo_sapiens	9
13	370	0.02	-9.2	0	Gallus_gallus	8
14	352	0.02	-9.2	0.01	Canis_familiaris	9
15	344	0.02	-9.2	0.01	Macaca_mulatta	15
16	336	0.14	-1.96	0.02	Gasterosteus_aculeatus	contig_2051
17	324	0.11	-2.2	0.11	Canis_familiaris	38	21464181	21470677	2	34%	78.8%	-1	236	between_species_paralog: 488669
18	270	0.1	-7	0.01	Gallus_gallus	19
19	256	0.09	-2.4	0.09	Canis_familiaris	14	47539870	47540257	2	29.3%	74.6%	-1	181	noComparaHits:
20	246	0.12	-2.11	0.01	Gallus_gallus	16
21	231	0.09	-2.4	0.09	Macaca_mulatta	1	194662785	194667422	2	22.8%	82.5%	1	169.1	between_species_paralog: PBX1
22	218	0.12	-2.11	0.01	Homo_sapiens	1
23	215	0.12	-2.11	0.01	Canis_familiaris	7
24	205	0.01	-4.6	0	Gasterosteus_aculeatus	contig_4301
25	196	0.11	-2.2	0.01	Macaca_mulatta	1
26	190	0.11	-2.2	0.01	Gasterosteus_aculeatus	contig_8547
27	187	0.01	-4.6	0	Homo_sapiens	19
28	186	0.01	-4.6	0	Gallus_gallus	17
29	181	0.09	-2.4	0.09	Canis_familiaris	9	60583566	60583760	1	15.1%	92.3%	-1	134	between_species_paralog: 480723
30	111	0.1	-2.29	0.01	Gasterosteus_aculeatus	contig_4828
31	104	0.01	-4.6	0	Gasterosteus_aculeatus	contig_1090
32	87	0.01	-4.6	0	Gasterosteus_aculeatus	contig_8720
33	75	0.01	-4.6	0	Homo_sapiens	1
34	73	0.01	-4.6	0	Canis_familiaris	7
35	73	0.01	-4.6	0	Macaca_mulatta	1
36	66	0.01	-4.6	0	Gasterosteus_aculeatus	contig_10000
37	65	0.1	-2.29	0.01	Gasterosteus_aculeatus	contig_1846
38	62	0.1	-2.29	0.01	Canis_familiaris	18
39	62	0.1	-2.29	0.01	Macaca_mulatta	3
40	62	0.1	-2.29	0.01	Macaca_mulatta	5
41	62	0.01	-4.6	0	Macaca_mulatta	19
42	61	0.1	-2.29	0.01	Gallus_gallus	1
43	59	0.01	-4.6	0	Gallus_gallus	17
44	58	0.01	-4.6	0	Gallus_gallus	8
45	58	0.1	-2.29	0.01	Canis_familiaris	15
46	56	0.1	-2.29	0.01	Gallus_gallus	4
47	49	0.01	-4.6	0	Gasterosteus_aculeatus	contig_9233
48	47	0.09	-2.4	0.01	Macaca_mulatta	X

Data table for reference protein loci

QueryProtein(s)=ENSP00000364190 (contained in p10)
QueryGenome=Homo_sapiens

ref-loci	geneName	protID	transID	geneID	protName	chr	startPos	endPos	meanPos	ori	numExons	protLength	selfscore
p1	-	ENSP00000364438	ENST00000375289	ENSG00000204338	-	6	32082154	32082573	32082262	1	3	75	157.1
p2	CREBL1	ENSP00000364396	ENST00000375247	ENSG00000168477	TENX_HUMAN	6	32084369	32173953	32144155	-1	44	4309	2556
p2	C4A	ENSP00000364321	ENST00000375177	ENSG00000204319	CO4B_HUMAN	6	32090601	32111033	32103012	1	41	1744	3150.8
p3	CREBL1	ENSP00000364349	ENST00000375203	ENSG00000168477	ATF6B_HUMAN	6	32191494	32203962	32194801	-1	18	703	1106.5
p4	FKBPL	ENSP00000364298	ENST00000375156	ENSG00000204315	NP_071393.2	6	32204486	32205535	32205005	-1	1	349	626
p5	PRRT1	ENSP00000364291	ENST00000375149	ENSG00000204314	Q5STI1_HUMAN	6	32224468	32227703	32225377	-1	4	516	709
p6	PPT2	ENSP00000364285	ENST00000375143	ENSG00000168452	PPT2_HUMAN	6	32229382	32238705	32231634	1	9	308	516.7
p7	AGPAT1	ENSP00000337463	ENST00000336984	ENSG00000204310	PLCA_HUMAN	6	32245031	32247251	32246258	-1	6	283	552
p8	RNF5	ENSP00000364235	ENST00000375094	ENSG00000204308	RNF5_HUMAN	6	32254267	32256081	32255514	1	6	180	311.9
p9	AGER	ENSP00000364211	ENST00000375070	ENSG00000204305	Q3L1R8_HUMAN	6	32256898	32259977	32258702	-1	11	422	572.8
p10	PBX2	ENSP00000364190	ENST00000375050	ENSG00000204304	PBX2_HUMAN	6	32262137	32265670	32263804	-1	9	430	705.5
p11	GPSM3	ENSP00000364180	ENST00000375040	ENSG00000204301	GPSM3_HUMAN	6	32267121	32268268	32267563	-1	4	160	134.4
p12	GPSM3	ENSP00000364163	ENST00000375023	ENSG00000204301	Q99466-2	6	32271192	32299683	32279995	-1	31	2005	2184.7
p13	NP_001013703.1	ENSP00000364156	ENST00000375016	ENSG00000204297	NP_001013703.1	6	32331474	32338620	32338378	1	2	158	99.8
p14	CF010_HUMAN	ENSP00000364141	ENST00000375002	ENSG00000204296	-	6	32368711	32447461	32369567	-1	18	567	299.8

total length of ref-loci (on slice) = 365308 (37e4)

region 1 (region 1 for Hsap)

syntenyRegion: Homo_sapiens.glob01.6.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 6 -i 32057864:32400312 -f 26e4 some_geneID_to_be_selected
scoreRatio_sum=24.17 log_scoreRatio_sum=2.48 focal_scoreRatio_sum=10.36
AlnScore=12868 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Homo_sapiens

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000364438	-	q1	q1	157.1	6	32082154	32082476	1	2	96%	98.6%	219	0.05 / 0.01 = 5	noComparaHits: STK19 ; ENSG00000204338	1
p2	q2	++/++	ENSP00000364396	CREBL1	q2	q2	2307.4	6	32084384	32173953	-1	12	34.5%	75.2%	5151	0.09 / 0.09 = 1	within_species_paralog: CREBL1	2
p2	q2	++/++	ENSP00000364321	C4A	q2	q2	3150.1	6	32090601	32111030	1	26	96.7%	75.4%	6756	0.01 / 0.01 = 1	within_species_paralog: C4A	2
p3	q3	+/+	ENSP00000364349	CREBL1	q3	q3	1106.5	6	32191497	32203962	-1	13	97.3%	78.4%	2412	0.01 / 0.01 = 1	within_species_paralog: CREBL1	1
p4	q4	+/+	ENSP00000364298	FKBPL	q4	q4	626	6	32204489	32205535	-1	1	100%	100%	1047	0.01 / 0.01 = 1	noComparaHits: FKBPL	1
p5	q5	+/+	ENSP00000364291	PRRT1	q5	q5	709	6	32224471	32227703	-1	3	100%	88.4%	1707	0.02 / 0.01 = 2	noComparaHits: PRRT1	1
p6	q6	+/+	ENSP00000364285	PPT2	q6	q6	516.7	6	32230338	32238702	1	5	99.4%	73.3%	1104	0.01 / 0.01 = 1	noComparaHits: PPT2	1
p7	q7	+/+	ENSP00000337463	AGPAT1	q7	q7	552	6	32245034	32247251	-1	5	100%	78.8%	1056	0.01 / 0.01 = 1	within_species_paralog: AGPAT1	1
p8	q8	+/+	ENSP00000364235	RNF5	q8	q8	311.9	6	32254267	32256030	1	4	87.8%	81.6%	588	0.01 / 0.01 = 1	within_species_paralog: RNF5	1
p9	q9	+/+	ENSP00000364211	AGER	q9	q9	566.2	6	32257952	32259749	-1	6	77.5%	85.2%	1107	0.01 / 0.01 = 1	noComparaHits: AGER	2
p10	q10	+/+	ENSP00000364190	PBX2	q10	q10	705.5	6	32262140	32265670	-1	8	100%	85.5%	1524	0.07 / 0.01 = 7	within_species_paralog: PBX2	1
p11	q11	+/+	ENSP00000364180	GPSM3	q11	q11	134.4	6	32267124	32267739	-1	2	85.6%	85%	420	0.01 / 0.01 = 1	within_species_paralog: GPSM3	1
p12	q12	+/+	ENSP00000364163	GPSM3	q12	q12	2034.7	6	32271195	32297084	-1	10	59.4%	89.1%	3996	0.01 / 0.06 = 0.17	within_species_paralog: GPSM3	3
p13	---	gapq	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	q13	+/+	ENSP00000364141	CF010_HUMAN	q13	q13	299.8	6	32369492	32400312	-1	2	32.5%	95.8%	567	0.01 / 0.01 = 1	noComparaHits: CF010_HUMAN	1

region 2 (region 2 for Hsap)

syntenyRegion: Homo_sapiens.glob02.c6_COX.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l c6_COX -i 32084691:32388185 -f 23e4 some_geneID_to_be_selected
scoreRatio_sum=20.83 log_scoreRatio_sum=2.01 focal_scoreRatio_sum=4.83
AlnScore=12807 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Homo_sapiens

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
---	q1	gaps	-	-	-	q1	-	-	-	-	-	-	-	-	-	-	-	-
p1	q2	+/+	ENSP00000364438	-	q2	q2	147.5	c6_COX	32102616	32102935	1	2	94.7%	95.8%	216	0.05 / 0.06 = 0.83	noComparaHits: CP21A_HUMAN	4
p2	q3	+/+	ENSP00000364396	CREBL1	q3	q3	2556	c6_COX	32104842	32161687	-1	15	37.3%	76.6%	5538	0.09 / 0.01 = 9	noComparaHits: ENSG00000206259 ; ATF6B_HUMAN ; Q9UC10_HUMAN	1
p2	q3	+/+	ENSP00000364321	C4A	q1	q3	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p3	q4	+/+	ENSP00000364349	CREBL1	q4	q4	1106.5	c6_COX	32179231	32191694	-1	13	97.3%	78.4%	2412	0.01 / 0.01 = 1	noComparaHits: ATF6B_HUMAN	1
p4	q5	+/+	ENSP00000364298	FKBPL	q5	q5	626	c6_COX	32192221	32193267	-1	1	100%	100%	1047	0.01 / 0.01 = 1	noComparaHits: NP_071393.2	1
p5	q6	+/+	ENSP00000364291	PRRT1	q6	q6	691	c6_COX	32212209	32215441	-1	3	100%	87.5%	1707	0.02 / 0.02 = 1	noComparaHits: Q99946-2	2
p6	q7	+/+	ENSP00000364285	PPT2	q7	q7	509.4	c6_COX	32218078	32226455	1	5	99.4%	72.8%	1104	0.01 / 0.01 = 1	noComparaHits: ENSG00000206256	3
p7	q8	+/+	ENSP00000337463	AGPAT1	q8	q8	552	c6_COX	32232787	32235004	-1	5	100%	78.8%	1056	0.01 / 0.01 = 1	noComparaHits: PLCA_HUMAN ; ENSG00000206256	1
p8	q9	+/+	ENSP00000364235	RNF5	q9	q9	311.5	c6_COX	32242020	32243783	1	4	87.8%	81.6%	588	0.01 / 0.01 = 1	noComparaHits: RNF5_HUMAN	2
p9	q10	+/+	ENSP00000364211	AGER	q10	q10	572.8	c6_COX	32245705	32247502	-1	6	78.4%	85.3%	1119	0.01 / 0.01 = 1	noComparaHits: Q15109-2	1
p10	q11	+/+	ENSP00000364190	PBX2	q11	q11	652.2	c6_COX	32249890	32252303	-1	7	83%	88.1%	1239	0.07 / 0.07 = 1	noComparaHits: PBX2_HUMAN	3
p11	q12	+/+	ENSP00000364180	GPSM3	q12	q12	133.2	c6_COX	32254874	32255489	-1	2	85.6%	84.9%	417	0.01 / 0.01 = 1	noComparaHits: GPSM3_HUMAN	2
p12	q13	+/+	ENSP00000364163	GPSM3	q13	q13	2182.7	c6_COX	32258945	32286305	-1	11	64.2%	89.5%	4305	0.01 / 0.01 = 1	noComparaHits: Q99466-2	2
p13	---	gapq	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	q14	+/+	ENSP00000364141	CF010_HUMAN	q14	q14	299.8	c6_COX	32357342	32388185	-1	2	32.5%	95.8%	567	0.01 / 0.01 = 1	noComparaHits: ENSG00000206245	1

region 3 (region 1 for Mmul)

syntenyRegion: Macaca_mulatta.glob01.4.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 4 -i 31636174:31958484 -f 24e4 some_geneID_to_be_selected
scoreRatio_sum=8.02 log_scoreRatio_sum=-13.02 focal_scoreRatio_sum=3.2
AlnScore=11776 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Macaca_mulatta

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
---	q1	gaps	-	-	-	q1	-	-	-	-	-	-	-	-	-	-	-	-
p1	q2	+/+	ENSP00000364438	-	q2	q2	141	4	31664208	31664527	1	2	94.7%	91.7%	216	0.05 / 0.1 = 0.5	noComparaHits: CYP21A2	1
p2	q3	+/+	ENSP00000364396	CREBL1	q3	q3	2252	4	31666440	31723190	-1	15	31.8%	81.4%	4440	0.09 / 0.11 = 0.82	ortholog_one2one: CREBL1	1
p2	q3	+/+	ENSP00000364321	C4A	q1	q3	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p3	q4	+/+	ENSP00000364349	CREBL1	q4	q4	869.4	4	31740869	31753171	-1	10	75.8%	74.6%	2034	0.01 / 0.21 = 0.05	noComparaHits: ENSMMUG00000015229	1
p4	q5	+/+	ENSP00000364298	FKBPL	q5	q5	601	4	31753695	31754741	-1	1	100%	96%	1047	0.01 / 0.03 = 0.33	ortholog_one2one: FKBPL	1
p5	q6	+/+	ENSP00000364291	PRRT1	q6	q6	661	4	31771037	31774254	-1	4	100%	84.3%	1617	0.02 / 0.06 = 0.33	ortholog_one2one: PRRT1	1
p6	q7	+/+	ENSP00000364285	PPT2	q7	q7	531	4	31776917	31784579	1	6	85.1%	91.6%	855	0.01 / 0.01 = 1	ortholog_one2one: PPT2	1
p7	q8	+/+	ENSP00000337463	AGPAT1	q8	q8	548	4	31791073	31793282	-1	5	100%	80.7%	1008	0.01 / 0.01 = 1	ortholog_one2one: AGPAT1	1
p8	q9	+/+	ENSP00000364235	RNF5	q9	q9	308.1	4	31800158	31801933	1	4	87.8%	78.4%	612	0.01 / 0.01 = 1	ortholog_one2many: ENSMMUG00000018438	1
p9	q10	+/+	ENSP00000364211	AGER	q10	q10	568.8	4	31804212	31805947	-1	6	76.8%	83.7%	1116	0.01 / 0.01 = 1	ortholog_one2one: AGER	1
p10	q11	+/+	ENSP00000364190	PBX2	q11	q11	669.9	4	31808327	31811700	-1	8	82.1%	84.1%	1287	0.07 / 0.05 = 1.4	ortholog_one2many: ENSMMUG00000018456	1
p11	q12	+/+	ENSP00000364180	GPSM3	q12	q12	131.3	4	31813173	31813787	-1	2	85.6%	82.9%	420	0.01 / 0.02 = 0.5	noComparaHits: ENSMMUG00000018459	1
p12	q13	+/+	ENSP00000364163	GPSM3	q13	q13	1197.9	4	31817259	31845640	-1	8	36.7%	94.6%	2232	0.01 / 0.45 = 0.02	ortholog_one2one: GPSM3	1
p13	---	gapq	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	q14	+/+	ENSP00000364141	CF010_HUMAN	q14	q14	255.3	4	31925204	31958484	-1	2	30.9%	92%	525	0.01 / 0.14 = 0.07	ortholog_one2one: CF010_HUMAN	1

region 4 (region 3 for Hsap)

syntenyRegion: Homo_sapiens.glob03.c6_QBL.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l c6_QBL -i 32083131:32392987 -f 23e4 some_geneID_to_be_selected
scoreRatio_sum=9.91 log_scoreRatio_sum=-1.82 focal_scoreRatio_sum=3.56
AlnScore=10425 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Homo_sapiens

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
---	q1	gaps	-	-	-	q1	-	-	-	-	-	-	-	-	-	-	-	-
p1	q2	+/+	ENSP00000364438	-	q2	q2	148.3	c6_QBL	32107425	32107744	1	2	94.7%	95.8%	216	0.05 / 0.05 = 1	noComparaHits: CP21A_HUMAN	2
p2	q3	+/+	ENSP00000364396	CREBL1	q3	q3	1599.6	c6_QBL	32109651	32155702	-1	12	24.6%	72.6%	3717	0.09 / 0.37 = 0.24	noComparaHits: O95682_HUMAN ; Q9UC11_HUMAN ; P22105-2 ; CP21A_HUMAN	3
p2	q3	+/+	ENSP00000364321	C4A	q1	q3	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p3	---	gapq	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gapq	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	q4	+/+	ENSP00000364291	PRRT1	q4	q4	684	c6_QBL	32216965	32220197	-1	3	100%	84.2%	1707	0.02 / 0.03 = 0.67	noComparaHits: Q99946-2	3
p6	q5	+/+	ENSP00000364285	PPT2	q5	q5	511.3	c6_QBL	32222829	32231200	1	5	99.4%	73%	1104	0.01 / 0.01 = 1	noComparaHits: NP_619731.1	2
p7	q6	+/+	ENSP00000337463	AGPAT1	q6	q6	552	c6_QBL	32237532	32239749	-1	5	100%	78.8%	1056	0.01 / 0.01 = 1	noComparaHits: NP_619731.1 ; PLCA_HUMAN	1
p8	q7	+/+	ENSP00000364235	RNF5	q7	q7	311.5	c6_QBL	32246765	32248528	1	4	87.8%	81.6%	588	0.01 / 0.01 = 1	noComparaHits: RNF5_HUMAN	2
p9	q8	+/+	ENSP00000364211	AGER	q8	q8	564.7	c6_QBL	32250450	32252247	-1	6	77.3%	85.1%	1104	0.01 / 0.01 = 1	noComparaHits: Q15109-2	3
p10	q9	+/+	ENSP00000364190	PBX2	q9	q9	654.3	c6_QBL	32254635	32257049	-1	7	83%	82.3%	1347	0.07 / 0.07 = 1	noComparaHits: PBX2_HUMAN	2
p11	q10	+/+	ENSP00000364180	GPSM3	q10	q10	134.4	c6_QBL	32259620	32260235	-1	2	85.6%	85%	420	0.01 / 0.01 = 1	noComparaHits: GPSM3_HUMAN	1
p12	q11	+/+	ENSP00000364163	GPSM3	q11	q11	2184.7	c6_QBL	32263691	32291062	-1	11	64.2%	89.7%	4305	0.01 / 0.01 = 1	noComparaHits: Q99466-3	1
p13	---	gapq	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	q12	+/+	ENSP00000364141	CF010_HUMAN	q12	q12	299.8	c6_QBL	32362189	32392987	-1	2	32.5%	95.8%	567	0.01 / 0.01 = 1	noComparaHits: ENSG00000206310	1

region 5 (region 1 for Cfam)

syntenyRegion: Canis_familiaris.glob01.12.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 12 -i 4436422:4833871 -f 30e4 some_geneID_to_be_selected
scoreRatio_sum=18.78 log_scoreRatio_sum=-15.16 focal_scoreRatio_sum=8.59
AlnScore=9187 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Canis_familiaris

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
---	q1	gaps	-	-	-	q1	-	-	-	-	-	-	-	-	-	-	-	-
p1	q2	+/+	ENSP00000364438	-	q2	q2	137.1	12	4454038	4454338	1	2	94.7%	84.7%	216	0.05 / 0.12 = 0.42	noComparaHits: CP21A_CANFA	1
p2	q3	+/+	ENSP00000364396	CREBL1	q3	q3	2915	12	4456195	4504286	-1	19	44.2%	74.3%	6312	0.09 / 0.01 = 9	ortholog_one2one: CREBL1	1
p2	q3	+/+	ENSP00000364321	C4A	q1	q3	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p3	q4	+/+	ENSP00000364349	CREBL1	q4	q4	851.5	12	4518437	4527871	-1	9	76.2%	71.2%	2094	0.01 / 0.23 = 0.04	noComparaHits: 474855	1
p4	q5	+/+	ENSP00000364298	FKBPL	q5	q5	512	12	4528426	4529472	-1	1	100%	83.7%	1047	0.01 / 0.18 = 0.06	ortholog_one2one: 481724	1
p5	q6	+/+	ENSP00000364291	PRRT1	q6	q6	209.7	12	4548532	4550666	-1	2	72.7%	50.9%	1143	0.02 / 0.7 = 0.03	ortholog_one2one: PRRT1	1
p6	q7	+/+	ENSP00000364285	PPT2	q7	q7	542.5	12	4554362	4559947	1	6	92.9%	78.7%	1014	0.01 / 0.01 = 1	ortholog_one2one: 474856	1
p7	q8	+/+	ENSP00000337463	AGPAT1	q8	q8	569.1	12	4565255	4567460	-1	6	100%	89.7%	900	0.01 / 0.01 = 1	ortholog_one2one: 474857	1
p8	q9	+/+	ENSP00000364235	RNF5	q9	q9	292.7	12	4574143	4575912	1	4	80.6%	93.5%	462	0.01 / 0.06 = 0.17	ortholog_one2one: 474858	1
p9	q10	+/+	ENSP00000364211	AGER	q10	q10	430.6	12	4577870	4579576	-1	6	69.9%	62.9%	1164	0.01 / 0.24 = 0.04	ortholog_one2one: Q20JV7_CANFA	1
p10	q11	+/+	ENSP00000364190	PBX2	q11	q11	772.3	12	4581926	4585201	-1	9	88.6%	93.4%	1215	0.07 / 0.01 = 7	ortholog_one2many: 607695	1
p11	---	gapq	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q12	+/+	ENSP00000364163	GPSM3	q12	q12	949.9	12	4591777	4608328	-1	5	33.6%	72.7%	2421	0.01 / 0.56 = 0.02	ortholog_one2one: GPSM3	1
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 6 (region 4 for Hsap)

syntenyRegion: Homo_sapiens.glob06.8.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 8 -i 38577387:38577875 -f 37e1 some_geneID_to_be_selected
scoreRatio_sum=0.5 log_scoreRatio_sum=-0.68 focal_scoreRatio_sum=0.17
AlnScore=971 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Homo_sapiens

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364396	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364321	C4A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	q1	+/+	ENSP00000364235	RNF5	q1	q1	303	8	38577387	38577875	-1	1	91.1%	97.6%	489	0.01 / 0.02 = 0.5	within_species_paralog: ENSG00000205408	3
p9	---	gape	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000364190	PBX2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000364163	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 7 (region 5 for Hsap)

syntenyRegion: Homo_sapiens.glob05.3.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 3 -i 144378006:144379148 -f 86e1 some_geneID_to_be_selected
scoreRatio_sum=0.7 log_scoreRatio_sum=-0.35 focal_scoreRatio_sum=0.7
AlnScore=891 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Homo_sapiens

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364396	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364321	C4A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q1	+/+	ENSP00000364190	PBX2	q1	q1	629	3	144378006	144379148	1	1	88.6%	97.6%	1143	0.07 / 0.1 = 0.7	within_species_paralog: Q6NW39_HUMAN	4
p11	---	gape	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000364163	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 8 (region 1 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob06.contig_1256.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_1256 -i 33557:58740 -f 19e3 some_geneID_to_be_selected
scoreRatio_sum=0.19 log_scoreRatio_sum=-1.65 focal_scoreRatio_sum=0.19
AlnScore=628 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364396	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364321	C4A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q1	+/+	ENSP00000364190	PBX2	q1	q1	443.7	contig_1256	55021	58740	-1	5	72.1%	72.7%	951	0.07 / 0.37 = 0.19	noComparaHits: ENSGACG00000013077	2
p11	---	gape	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000364163	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 9 (region 1 for Ggal)

syntenyRegion: Gallus_gallus.glob06.8.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 8 -i 5417503:5894580 -f 36e4 some_geneID_to_be_selected
scoreRatio_sum=0.18 log_scoreRatio_sum=-1.7 focal_scoreRatio_sum=0.18
AlnScore=596 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Gallus_gallus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364396	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364321	C4A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q1	+/+	ENSP00000364190	PBX2	q1	q1	421	8	5436132	5442660	-1	4	57%	83%	774	0.07 / 0.4 = 0.18	between_species_paralog: Q9IB15_CHICK	1
p11	---	gape	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000364163	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 10 (region 2 for Ggal)

syntenyRegion: Gallus_gallus.glob03.17.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 17 -i 10452488:11033352 -f 44e4 some_geneID_to_be_selected
scoreRatio_sum=0.23 log_scoreRatio_sum=-4.33 focal_scoreRatio_sum=0.14
AlnScore=499 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Gallus_gallus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	/+	ENSP00000364396	CREBL1	q1	q1	146	17	11032733	11033352	-1	2	3.4%	44.3%	438	0.09 / 0.94 = 0.1	between_species_paralog: ANGPTL2	10
p2	q1	/+	ENSP00000364321	C4A	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
---	q2	gapp	-	-	-	q2	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gapq	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gapq	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gapq	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q3	+/+	ENSP00000364190	PBX2	q3	q3	333	17	10528437	10535046	1	3	45.3%	84.6%	597	0.07 / 0.52 = 0.13	between_species_paralog: Q5ZLI3_CHICK	2
p11	---	gape	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000364163	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 11 (region 2 for Mmul)

syntenyRegion: Macaca_mulatta.glob02.15.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 15 -i 20999197:21062436 -f 47e3 some_geneID_to_be_selected
scoreRatio_sum=0.16 log_scoreRatio_sum=-1.82 focal_scoreRatio_sum=0.02
AlnScore=420 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Macaca_mulatta

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000364396	CREBL1	q1	q1	1075.3	15	20999221	21062436	1	9	26.2%	44.8%	3411	0.09 / 0.57 = 0.16	between_species_paralog: TNC	2
p2	q1	+/+	ENSP00000364321	C4A	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p3	---	gape	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000364190	PBX2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000364163	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 12 (region 6 for Hsap)

syntenyRegion: Homo_sapiens.glob04.9.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 9 -i 116826067:116889374 -f 47e3 some_geneID_to_be_selected
scoreRatio_sum=0.15 log_scoreRatio_sum=-1.89 focal_scoreRatio_sum=0.02
AlnScore=371 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Homo_sapiens

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000364396	CREBL1	q1	q1	949.2	9	116826067	116889350	-1	7	22.7%	45.2%	2946	0.09 / 0.62 = 0.15	within_species_paralog: TNC	4
p2	q1	+/+	ENSP00000364321	C4A	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p3	---	gape	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000364190	PBX2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000364163	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 13 (region 3 for Ggal)

syntenyRegion: Gallus_gallus.glob08.8.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 8 -i 3750100:4261506 -f 38e4 some_geneID_to_be_selected
scoreRatio_sum=0.02 log_scoreRatio_sum=-9.2 focal_scoreRatio_sum=0
AlnScore=370 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Gallus_gallus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364396	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364321	C4A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q1	/+	ENSP00000364349	CREBL1	q1	q1	117.1	8	3750100	3750478	1	2	12.8%	56.7%	270	0.01 / 0.89 = 0.01	noComparaHits: ATF6	1
p4	---	gapq	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gapq	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gapq	ENSP00000364190	PBX2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q2	/+	ENSP00000364163	GPSM3	q2	q2	706.7	8	4206285	4261506	1	10	43.6%	44.7%	2625	0.01 / 0.67 = 0.01	between_species_paralog: Q98UI4_CHICK	1
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 14 (region 2 for Cfam)

syntenyRegion: Canis_familiaris.glob04.9.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 9 -i 52206927:52347623 -f 11e4 some_geneID_to_be_selected
scoreRatio_sum=0.02 log_scoreRatio_sum=-9.2 focal_scoreRatio_sum=0.01
AlnScore=352 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Canis_familiaris

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364396	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364321	C4A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	q1	/+	ENSP00000337463	AGPAT1	q1	q1	119.8	9	52206927	52207398	1	2	32.5%	54.3%	282	0.01 / 0.78 = 0.01	between_species_paralog: 491249	2
p8	---	gapq	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gapq	ENSP00000364190	PBX2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q2	/+	ENSP00000364163	GPSM3	q2	q2	400.7	9	52340944	52347623	1	5	28.3%	41.9%	1980	0.01 / 0.81 = 0.01	between_species_paralog: 480676	4
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 15 (region 3 for Mmul)

syntenyRegion: Macaca_mulatta.glob06.15.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 15 -i 1610092:1797597 -f 14e4 some_geneID_to_be_selected
scoreRatio_sum=0.02 log_scoreRatio_sum=-9.2 focal_scoreRatio_sum=0.01
AlnScore=344 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Macaca_mulatta

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364396	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364321	C4A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	q1	/+	ENSP00000337463	AGPAT1	q1	q1	130.2	15	1610092	1610599	1	2	32.5%	56.3%	309	0.01 / 0.76 = 0.01	between_species_paralog: AGPAT2	2
p8	---	gapq	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gapq	ENSP00000364190	PBX2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q2	/+	ENSP00000364163	GPSM3	q2	q2	340.3	15	1772338	1797597	1	4	30.3%	39%	2016	0.01 / 0.84 = 0.01	between_species_paralog: NOTCH1	3
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 16 (region 2 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob01.contig_2051.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_2051 -i 30541:57951 -f 21e3 some_geneID_to_be_selected
scoreRatio_sum=0.14 log_scoreRatio_sum=-1.96 focal_scoreRatio_sum=0.02
AlnScore=336 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000364396	CREBL1	q1	q1	859	contig_2051	30541	57951	-1	7	20.4%	44.3%	2703	0.09 / 0.66 = 0.14	noComparaHits: ENSGACG00000005274	1
p2	q1	+/+	ENSP00000364321	C4A	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p3	---	gape	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000364190	PBX2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000364163	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 17 (region 3 for Cfam)

syntenyRegion: Canis_familiaris.glob09.38.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 38 -i 21451977:21699273 -f 19e4 some_geneID_to_be_selected
scoreRatio_sum=0.11 log_scoreRatio_sum=-2.2 focal_scoreRatio_sum=0.11
AlnScore=324 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Canis_familiaris

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364396	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364321	C4A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q1	gapp	-	-	-	q1	-	-	-	-	-	-	-	-	-	-	-	-
p10	q2	+/+	ENSP00000364190	PBX2	q2	q2	236	38	21464181	21470677	-1	2	34%	78.8%	435	0.07 / 0.66 = 0.11	between_species_paralog: 488669	3
p11	---	gape	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000364163	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 18 (region 4 for Ggal)

syntenyRegion: Gallus_gallus.glob05.19.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 19 -i 35490:408614 -f 28e4 some_geneID_to_be_selected
scoreRatio_sum=0.1 log_scoreRatio_sum=-7 focal_scoreRatio_sum=0.01
AlnScore=270 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Gallus_gallus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
---	q1	gaps	-	-	-	q1	-	-	-	-	-	-	-	-	-	-	-	-
p1	---	gapq	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q2	+/+	ENSP00000364396	CREBL1	q1	q2	122	19	177228	177767	-1	1	4.1%	33.2%	540	0.09 / 0.95 = 0.09	noComparaHits: 417458	noData
p2	q2	+/+	ENSP00000364321	C4A	noMatch	q2	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p3	---	gapq	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gapq	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gapq	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	q3	+/+	ENSP00000337463	AGPAT1	q3	q3	129	19	407917	408614	-1	2	31.8%	60%	270	0.01 / 0.76 = 0.01	ortholog_one2many: ENSGALG00000000984	2
p8	---	gape	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000364190	PBX2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000364163	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 19 (region 4 for Cfam)

syntenyRegion: Canis_familiaris.glob08.14.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 14 -i 47539870:47540257 -f 29e1 some_geneID_to_be_selected
scoreRatio_sum=0.09 log_scoreRatio_sum=-2.4 focal_scoreRatio_sum=0.09
AlnScore=256 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Canis_familiaris

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364396	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364321	C4A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q1	+/+	ENSP00000364190	PBX2	q1	q1	181	14	47539870	47540257	-1	2	29.3%	74.6%	378	0.07 / 0.74 = 0.09	noComparaHits:	4
p11	---	gape	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000364163	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 20 (region 5 for Ggal)

syntenyRegion: Gallus_gallus.glob02.16.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 16 -i 20881:34677 -f 10e3 some_geneID_to_be_selected
scoreRatio_sum=0.12 log_scoreRatio_sum=-2.11 focal_scoreRatio_sum=0.01
AlnScore=246 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Gallus_gallus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000364396	CREBL1	q1	q1	630.9	16	20881	27939	1	6	19.1%	45.2%	2520	0.09 / 0.75 = 0.12	between_species_paralog: NP_990520.1	2
p2	q1	+/+	ENSP00000364321	C4A	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p3	---	gape	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000364190	PBX2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000364163	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 21 (region 4 for Mmul)

syntenyRegion: Macaca_mulatta.glob10.1.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 1 -i 194647786:194667422 -f 15e3 some_geneID_to_be_selected
scoreRatio_sum=0.09 log_scoreRatio_sum=-2.4 focal_scoreRatio_sum=0.09
AlnScore=231 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Macaca_mulatta

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364396	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364321	C4A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q1	+/+	ENSP00000364190	PBX2	q1	q1	169.1	1	194662785	194667422	1	2	22.8%	82.5%	309	0.07 / 0.76 = 0.09	between_species_paralog: PBX1	3
p11	---	gapq	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000364163	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q2	gape	-	-	-	q2	-	-	-	-	-	-	-	-	-	-	-	-
---	q3	gape	-	-	-	q3	-	-	-	-	-	-	-	-	-	-	-	-

region 22 (region 7 for Hsap)

syntenyRegion: Homo_sapiens.glob09.1.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 1 -i 173315004:173639442 -f 24e4 some_geneID_to_be_selected
scoreRatio_sum=0.12 log_scoreRatio_sum=-2.11 focal_scoreRatio_sum=0.01
AlnScore=218 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Homo_sapiens

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
---	q1	gaps	-	-	-	q1	-	-	-	-	-	-	-	-	-	-	-	-
p1	---	gapq	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q2	+/+	ENSP00000364396	CREBL1	q2	q2	563.9	1	173559143	173639352	-1	7	11%	49.6%	1494	0.09 / 0.77 = 0.12	within_species_paralog: TNR	5
p2	q2	+/+	ENSP00000364321	C4A	noMatch	q2	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p3	---	gape	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000364190	PBX2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000364163	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 23 (region 5 for Cfam)

syntenyRegion: Canis_familiaris.glob03.7.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 7 -i 27013404:27266251 -f 19e4 some_geneID_to_be_selected
scoreRatio_sum=0.12 log_scoreRatio_sum=-2.11 focal_scoreRatio_sum=0.01
AlnScore=215 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Canis_familiaris

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
---	q1	gaps	-	-	-	q1	-	-	-	-	-	-	-	-	-	-	-	-
p1	---	gapq	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q2	+/+	ENSP00000364396	CREBL1	q2	q2	556.1	7	27013512	27090588	1	7	11.2%	50.4%	1452	0.09 / 0.78 = 0.12	between_species_paralog: TNR	3
p2	q2	+/+	ENSP00000364321	C4A	noMatch	q2	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p3	---	gape	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000364190	PBX2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000364163	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 24 (region 3 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob05.contig_4301.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_4301 -i 10054:22625 -f 94e2 some_geneID_to_be_selected
scoreRatio_sum=0.01 log_scoreRatio_sum=-4.6 focal_scoreRatio_sum=0
AlnScore=205 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364396	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364321	C4A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000364190	PBX2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000364163	GPSM3	q1	q1	449.6	contig_4301	18792	22625	1	5	32.9%	38.6%	2325	0.01 / 0.79 = 0.01	noComparaHits:	3
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 25 (region 5 for Mmul)

syntenyRegion: Macaca_mulatta.glob04.1.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 1 -i 204700166:205003509 -f 23e4 some_geneID_to_be_selected
scoreRatio_sum=0.11 log_scoreRatio_sum=-2.2 focal_scoreRatio_sum=0.01
AlnScore=196 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Macaca_mulatta

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
---	q1	gaps	-	-	-	q1	-	-	-	-	-	-	-	-	-	-	-	-
p1	---	gapq	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q2	+/+	ENSP00000364396	CREBL1	q2	q2	508.4	1	204923707	205003419	-1	6	11.2%	46.1%	1482	0.09 / 0.8 = 0.11	between_species_paralog: TNR	3
p2	q2	+/+	ENSP00000364321	C4A	noMatch	q2	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p3	---	gape	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000364190	PBX2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000364163	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 26 (region 4 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob07.contig_8547.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_8547 -i 65653:157218 -f 69e3 some_geneID_to_be_selected
scoreRatio_sum=0.11 log_scoreRatio_sum=-2.2 focal_scoreRatio_sum=0.01
AlnScore=190 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
---	q1	gaps	-	-	-	q1	-	-	-	-	-	-	-	-	-	-	-	-
p1	---	gapq	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q2	+/+	ENSP00000364396	CREBL1	q2	q2	491.4	contig_8547	112785	157218	-1	6	11.3%	40.4%	1647	0.09 / 0.8 = 0.11	noComparaHits: ENSGACG00000013743	2
p2	q2	+/+	ENSP00000364321	C4A	noMatch	q2	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p3	---	gape	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000364190	PBX2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000364163	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 27 (region 8 for Hsap)

syntenyRegion: Homo_sapiens.glob10.19.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 19 -i 15137168:15164395 -f 20e3 some_geneID_to_be_selected
scoreRatio_sum=0.01 log_scoreRatio_sum=-4.6 focal_scoreRatio_sum=0
AlnScore=187 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Homo_sapiens

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364396	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364321	C4A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000364190	PBX2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000364163	GPSM3	q1	q1	409.2	19	15137168	15163679	-1	5	27%	45.1%	1752	0.01 / 0.81 = 0.01	within_species_paralog: NOTCH3	5
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 28 (region 6 for Ggal)

syntenyRegion: Gallus_gallus.glob01.17.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 17 -i 8423704:8528751 -f 79e3 some_geneID_to_be_selected
scoreRatio_sum=0.01 log_scoreRatio_sum=-4.6 focal_scoreRatio_sum=0
AlnScore=186 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Gallus_gallus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364396	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364321	C4A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000364190	PBX2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000364163	GPSM3	q1	q1	408.3	17	8520703	8528751	1	5	27.5%	42.1%	1734	0.01 / 0.81 = 0.01	ortholog_one2many: Q9W737_CHICK	2
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 29 (region 6 for Cfam)

syntenyRegion: Canis_familiaris.glob10.9.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 9 -i 60547240:60756636 -f 16e4 some_geneID_to_be_selected
scoreRatio_sum=0.09 log_scoreRatio_sum=-2.4 focal_scoreRatio_sum=0.09
AlnScore=181 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Canis_familiaris

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364396	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364321	C4A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q1	+/+	ENSP00000364190	PBX2	q1	q1	134	9	60583566	60583760	-1	1	15.1%	92.3%	195	0.07 / 0.81 = 0.09	between_species_paralog: 480723	6
p11	---	gapq	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000364163	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q2	gape	-	-	-	q2	-	-	-	-	-	-	-	-	-	-	-	-

region 30 (region 5 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob08.contig_4828.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_4828 -i 1257:6373 -f 38e2 some_geneID_to_be_selected
scoreRatio_sum=0.1 log_scoreRatio_sum=-2.29 focal_scoreRatio_sum=0.01
AlnScore=111 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000364396	CREBL1	q1	q1	284.6	contig_4828	1257	6293	-1	3	7.7%	44.3%	1005	0.09 / 0.88 = 0.1	noComparaHits:	5
p2	q1	+/+	ENSP00000364321	C4A	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p3	---	gape	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000364190	PBX2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000364163	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 31 (region 6 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob03.contig_1090.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_1090 -i 23627:39760 -f 12e3 some_geneID_to_be_selected
scoreRatio_sum=0.01 log_scoreRatio_sum=-4.6 focal_scoreRatio_sum=0
AlnScore=104 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000364396	CREBL1	q2	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p2	q1	+/+	ENSP00000364321	C4A	q1	q1	362.3	contig_1090	33229	39760	-1	7	23.1%	37.1%	1410	0.01 / 0.88 = 0.01	noComparaHits: ENSGACG00000007933	1
---	q2	gapp	-	-	-	q2	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gape	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000364190	PBX2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000364163	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 32 (region 7 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob02.contig_8720.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_8720 -i 103153:108152 -f 38e2 some_geneID_to_be_selected
scoreRatio_sum=0.01 log_scoreRatio_sum=-4.6 focal_scoreRatio_sum=0
AlnScore=87 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364396	CREBL1	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364321	C4A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000364190	PBX2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000364163	GPSM3	q1	q1	192	contig_8720	106098	108128	-1	1	33.9%	30.6%	2031	0.01 / 0.91 = 0.01	noComparaHits: ENSGACG00000002616	6
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 33 (region 9 for Hsap)

syntenyRegion: Homo_sapiens.glob08.1.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 1 -i 195564177:195678048 -f 85e3 some_geneID_to_be_selected
scoreRatio_sum=0.01 log_scoreRatio_sum=-4.6 focal_scoreRatio_sum=0
AlnScore=75 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Homo_sapiens

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364396	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364321	C4A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000364190	PBX2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q1	gapp	-	-	-	q1	-	-	-	-	-	-	-	-	-	-	-	-
p12	q2	+/+	ENSP00000364163	GPSM3	q2	q2	185.8	1	195564183	195580212	1	2	12.8%	40.9%	756	0.01 / 0.91 = 0.01	noComparaHits: CRB1	7
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 34 (region 7 for Cfam)

syntenyRegion: Canis_familiaris.glob02.7.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 7 -i 8271745:8375740 -f 78e3 some_geneID_to_be_selected
scoreRatio_sum=0.01 log_scoreRatio_sum=-4.6 focal_scoreRatio_sum=0
AlnScore=73 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Canis_familiaris

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364396	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364321	C4A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000364190	PBX2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000364163	GPSM3	q1	q1	169.8	7	8271979	8286669	-1	2	11.1%	39.1%	684	0.01 / 0.92 = 0.01	noComparaHits: 490260	6
p13	---	gapq	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q2	gape	-	-	-	q2	-	-	-	-	-	-	-	-	-	-	-	-

region 35 (region 6 for Mmul)

syntenyRegion: Macaca_mulatta.glob03.1.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 1 -i 173094897:173209033 -f 86e3 some_geneID_to_be_selected
scoreRatio_sum=0.01 log_scoreRatio_sum=-4.6 focal_scoreRatio_sum=0
AlnScore=73 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Macaca_mulatta

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364396	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364321	C4A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000364190	PBX2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000364163	GPSM3	q2	q1	170.3	1	173101696	173116289	-1	2	9.7%	40%	612	0.01 / 0.92 = 0.01	noComparaHits: CRB1	8
p13	---	gapq	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q2	gape	-	-	-	q2	-	-	-	-	-	-	-	-	-	-	-	-

region 36 (region 8 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob04.contig_10000.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_10000 -i 55348:72296 -f 13e3 some_geneID_to_be_selected
scoreRatio_sum=0.01 log_scoreRatio_sum=-4.6 focal_scoreRatio_sum=0
AlnScore=66 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364396	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364321	C4A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000364190	PBX2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000364163	GPSM3	q1	q1	145	contig_10000	55402	56100	1	1	11.7%	37.3%	699	0.01 / 0.93 = 0.01	noComparaHits: ENSGACG00000003512	10
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 37 (region 9 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob09.contig_1846.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_1846 -i 1550:48186 -f 35e3 some_geneID_to_be_selected
scoreRatio_sum=0.1 log_scoreRatio_sum=-2.29 focal_scoreRatio_sum=0.01
AlnScore=65 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000364396	CREBL1	q1	q1	166.7	contig_1846	46640	48186	1	2	4.9%	36%	720	0.09 / 0.93 = 0.1	noComparaHits: ENSGACG00000012019	9
p2	q1	+/+	ENSP00000364321	C4A	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p3	---	gape	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000364190	PBX2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000364163	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 38 (region 8 for Cfam)

syntenyRegion: Canis_familiaris.glob05.18.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 18 -i 20320820:20321503 -f 51e1 some_geneID_to_be_selected
scoreRatio_sum=0.1 log_scoreRatio_sum=-2.29 focal_scoreRatio_sum=0.01
AlnScore=62 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Canis_familiaris

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000364396	CREBL1	q1	q1	159	18	20320820	20321503	-1	1	4.9%	36.9%	684	0.09 / 0.93 = 0.1	between_species_paralog: 475902	5
p2	q1	+/+	ENSP00000364321	C4A	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p3	---	gape	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000364190	PBX2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000364163	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 39 (region 7 for Mmul)

syntenyRegion: Macaca_mulatta.glob07.3.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 3 -i 140171378:140172097 -f 54e1 some_geneID_to_be_selected
scoreRatio_sum=0.1 log_scoreRatio_sum=-2.29 focal_scoreRatio_sum=0.01
AlnScore=62 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Macaca_mulatta

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000364396	CREBL1	q1	q1	159	3	140171378	140172097	1	1	5.2%	35.9%	720	0.09 / 0.93 = 0.1	between_species_paralog: FGL2	5
p2	q1	+/+	ENSP00000364321	C4A	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p3	---	gape	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000364190	PBX2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000364163	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 40 (region 8 for Mmul)

syntenyRegion: Macaca_mulatta.glob08.5.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 5 -i 146785927:146786622 -f 52e1 some_geneID_to_be_selected
scoreRatio_sum=0.1 log_scoreRatio_sum=-2.29 focal_scoreRatio_sum=0.01
AlnScore=62 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Macaca_mulatta

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000364396	CREBL1	q1	q1	159	5	146785927	146786622	-1	1	4.8%	40.3%	696	0.09 / 0.93 = 0.1	between_species_paralog: Q28495_MACMU	5
p2	q1	+/+	ENSP00000364321	C4A	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p3	---	gape	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000364190	PBX2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000364163	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 41 (region 9 for Mmul)

syntenyRegion: Macaca_mulatta.glob09.19.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 19 -i 45855198:45857337 -f 16e2 some_geneID_to_be_selected
scoreRatio_sum=0.01 log_scoreRatio_sum=-4.6 focal_scoreRatio_sum=0
AlnScore=62 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Macaca_mulatta

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364396	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364321	C4A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000364190	PBX2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000364163	GPSM3	q1	q1	136.7	19	45855204	45857337	1	2	10%	38.7%	588	0.01 / 0.93 = 0.01	noComparaHits: DLL3	9
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 42 (region 7 for Ggal)

syntenyRegion: Gallus_gallus.glob09.1.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 1 -i 13746166:13746846 -f 51e1 some_geneID_to_be_selected
scoreRatio_sum=0.1 log_scoreRatio_sum=-2.29 focal_scoreRatio_sum=0.01
AlnScore=61 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Gallus_gallus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000364396	CREBL1	q1	q1	157	1	13746166	13746846	1	1	4.9%	37%	681	0.09 / 0.93 = 0.1	between_species_paralog: Q5F3I1_CHICK	7
p2	q1	+/+	ENSP00000364321	C4A	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p3	---	gape	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000364190	PBX2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000364163	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 43 (region 8 for Ggal)

syntenyRegion: Gallus_gallus.glob04.17.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 17 -i 9702479:9722742 -f 15e3 some_geneID_to_be_selected
scoreRatio_sum=0.01 log_scoreRatio_sum=-4.6 focal_scoreRatio_sum=0
AlnScore=59 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Gallus_gallus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364396	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364321	C4A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000364190	PBX2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000364163	GPSM3	q1	q1	131	17	9702524	9703180	1	1	11.3%	36.1%	657	0.01 / 0.94 = 0.01	noComparaHits: CRB2	6
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 44 (region 9 for Ggal)

syntenyRegion: Gallus_gallus.glob07.8.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 8 -i 2516675:2561832 -f 34e3 some_geneID_to_be_selected
scoreRatio_sum=0.01 log_scoreRatio_sum=-4.6 focal_scoreRatio_sum=0
AlnScore=58 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Gallus_gallus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364396	CREBL1	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364321	C4A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000364190	PBX2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000364163	GPSM3	q1	q1	128	8	2561230	2561688	-1	1	7.5%	44.4%	459	0.01 / 0.94 = 0.01	noComparaHits: CRB1	7
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 45 (region 9 for Cfam)

syntenyRegion: Canis_familiaris.glob07.15.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 15 -i 55260385:55261092 -f 53e1 some_geneID_to_be_selected
scoreRatio_sum=0.1 log_scoreRatio_sum=-2.29 focal_scoreRatio_sum=0.01
AlnScore=58 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Canis_familiaris

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000364396	CREBL1	q1	q1	149	15	55260385	55261092	-1	1	4.9%	38.8%	708	0.09 / 0.94 = 0.1	between_species_paralog: FIBA_CANFA	6
p2	q1	+/+	ENSP00000364321	C4A	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p3	---	gape	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000364190	PBX2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000364163	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 46 (region 10 for Ggal)

syntenyRegion: Gallus_gallus.glob10.4.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 4 -i 21404702:21405313 -f 46e1 some_geneID_to_be_selected
scoreRatio_sum=0.1 log_scoreRatio_sum=-2.29 focal_scoreRatio_sum=0.01
AlnScore=56 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Gallus_gallus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000364396	CREBL1	q1	q1	145	4	21404702	21405313	-1	1	4.2%	40.8%	612	0.09 / 0.94 = 0.1	between_species_paralog: FIBA_CHICK	noData
p2	q1	+/+	ENSP00000364321	C4A	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p3	---	gape	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000364190	PBX2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000364163	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 47 (region 10 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob10.contig_9233.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_9233 -i 1055:12985 -f 89e2 some_geneID_to_be_selected
scoreRatio_sum=0.01 log_scoreRatio_sum=-4.6 focal_scoreRatio_sum=0
AlnScore=49 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364396	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000364321	C4A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000364190	PBX2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000364163	GPSM3	q1	q1	109	contig_9233	10898	11221	1	1	5.4%	47.7%	324	0.01 / 0.95 = 0.01	noComparaHits: ENSGACG00000018306	noData
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 48 (region 10 for Mmul)

syntenyRegion: Macaca_mulatta.glob05.X.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l X -i 88638179:89008099 -f 28e4 some_geneID_to_be_selected
scoreRatio_sum=0.09 log_scoreRatio_sum=-2.4 focal_scoreRatio_sum=0.01
AlnScore=47 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000364190 (contained in p10)
TargetGenome=Macaca_mulatta

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000364438	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000364396	CREBL1	q1	q1	122	X	89007905	89008099	1	1	1.5%	87.7%	195	0.09 / 0.95 = 0.09	noComparaHits:	10
p2	q1	+/+	ENSP00000364321	C4A	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p3	---	gape	ENSP00000364349	CREBL1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000364298	FKBPL	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000364291	PRRT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000364285	PPT2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000337463	AGPAT1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000364235	RNF5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000364211	AGER	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000364190	PBX2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000364180	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000364163	GPSM3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000364156	NP_001013703.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000364141	CF010_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

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Overview on processed synteny regions for PBX2_ENSG00000204304_2e5.protein.info

Data table for reference protein loci

Parameter used for the loci-alignments