Overview on processed synteny regions for OLIG2_ENSG00000205927_5e5.protein.info
Rank | AlnOverview | AlnScore | RatioSum | logRatioSum | focalRatioSum | TargetGenome | chr | startPos | endPos | hitsCount | queryCov | meanIdentity | ori | score | compara |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | 13998 | 1070 | 59.55 | 298.34 | Homo_sapiens | 21 | 33321041 | 33322009 | 1 | 100% | 96% | 1 | 387 | within_species_paralog: OLIG2 | |
2 | 12368 | 345.28 | 34.57 | 114.62 | Macaca_mulatta | 3 | 13528433 | 13529401 | 1 | 100% | 89.2% | -1 | 384 | ortholog_one2one: OLIG2 | |
3 | 8984 | 134.11 | 22.31 | 28.8 | Canis_familiaris | 31 | |||||||||
4 | 4283 | 20.69 | 6.2 | 5.32 | Gallus_gallus | 1 | |||||||||
5 | 1273 | 2.36 | 0.13 | 0.35 | Macaca_mulatta | 4 | |||||||||
6 | 875 | 2.67 | 0.98 | 0.33 | Macaca_mulatta | 8 | |||||||||
7 | 742 | 2.96 | 1.09 | 0.59 | Gasterosteus_aculeatus | contig_648 | |||||||||
8 | 738 | 1 | 0 | 0.17 | Homo_sapiens | 6 | |||||||||
9 | 679 | 1 | 0 | 0.13 | Homo_sapiens | 19 | |||||||||
10 | 590 | 0.8 | -0.21 | 0.1 | Macaca_mulatta | 19 | |||||||||
11 | 571 | 1.07 | 0.07 | 1.07 | Gasterosteus_aculeatus | contig_7639 | 275 | 1087 | 1 | 100% | 57.3% | -1 | 221 | noComparaHits: ENSGACG00000002152 | |
12 | 550 | 1.02 | 0.02 | 1.02 | Macaca_mulatta | 4 | 126349791 | 126350447 | 1 | 76.8% | 57.4% | 1 | 213 | between_species_paralog: OLIG3 | |
13 | 545 | 1 | 0 | 1 | Canis_familiaris | 1 | 32963439 | 32964080 | 1 | 75.5% | 56.6% | -1 | 211 | ortholog_one2many: 484005 | |
14 | 542 | 1 | 0 | 1 | Homo_sapiens | 6 | 137856197 | 137856838 | 1 | 75.5% | 56.6% | -1 | 210 | within_species_paralog: OLIG3 | |
15 | 504 | 1.94 | 0.66 | 0.65 | Gasterosteus_aculeatus | contig_653 | |||||||||
16 | 498 | 0.9 | -0.1 | 0.9 | Gallus_gallus | 3 | 56633133 | 56633726 | 1 | 70.6% | 60.1% | 1 | 193 | ortholog_one2many: 428612 | |
17 | 495 | 1.4 | 0.34 | 0.35 | Gasterosteus_aculeatus | contig_647 | |||||||||
18 | 420 | 0.56 | -0.57 | 0.07 | Canis_familiaris | 2 | |||||||||
19 | 405 | 0.76 | -0.26 | 0.76 | Gasterosteus_aculeatus | contig_5037 | 89711 | 90313 | 1 | 66.3% | 49.8% | -1 | 157 | noComparaHits: ENSGACG00000010412 | |
20 | 390 | 1.67 | 0.51 | 0.19 | Gasterosteus_aculeatus | contig_1187 | |||||||||
21 | 358 | 1.09 | 0.09 | 0.27 | Gallus_gallus | 3 | |||||||||
22 | 354 | 1.13 | 0.12 | 0.56 | Gasterosteus_aculeatus | contig_7638 | |||||||||
23 | 322 | 0.67 | -0.39 | 0.67 | Gasterosteus_aculeatus | contig_4002 | 23870 | 24457 | 1 | 67.2% | 43.4% | -1 | 125 | noComparaHits: ENSGACG00000007415 | |
24 | 295 | 1 | 0 | 0.25 | Canis_familiaris | 1 | |||||||||
25 | 293 | 1 | 0 | 0.25 | Homo_sapiens | 6 | |||||||||
26 | 251 | 1 | 0 | 0.2 | Homo_sapiens | 10 | |||||||||
27 | 229 | 0.96 | -0.03 | 0.19 | Canis_familiaris | 19 | |||||||||
28 | 111 | 0.8 | -0.21 | 0.2 | Macaca_mulatta | 4 | |||||||||
29 | 54 | 0.74 | -0.29 | 0.19 | Gallus_gallus | Z |
Data table for reference protein loci
QueryProtein(s)=ENSP00000371794 (contained in p7)QueryGenome=Homo_sapiens
ref-loci | geneName | protID | transID | geneID | protName | chr | startPos | endPos | meanPos | ori | numExons | protLength | selfscore |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | CU077_HUMAN | ENSP00000334495 | ENST00000334165 | ENSG00000186842 | CU077_HUMAN | 21 | 32869642 | 32870022 | 32869828 | -1 | 1 | 126 | 209 |
p2 | TCP10L | ENSP00000372115 | ENST00000382669 | ENSG00000166984 | TCP1L_HUMAN | 21 | 32870955 | 32878485 | 32876411 | -1 | 4 | 215 | 376.2 |
p3 | C21orf59 | ENSP00000348900 | ENST00000356507 | ENSG00000159079 | CU059_HUMAN | 21 | 32896044 | 32906424 | 32898399 | -1 | 7 | 290 | 549.4 |
p4 | SYNJ1 | ENSP00000322234 | ENST00000322229 | ENSG00000159082 | SYNJ1_HUMAN | 21 | 32925176 | 33021077 | 32951991 | -1 | 31 | 1573 | 2901.2 |
p5 | GCFC_HUMAN | ENSP00000371862 | ENST00000382425 | ENSG00000159086 | GCFC_HUMAN | 21 | 33029132 | 33065850 | 33049536 | -1 | 18 | 917 | 1648.9 |
p6 | CU062_HUMAN | ENSP00000371810 | ENST00000382373 | ENSG00000205929 | CU062_HUMAN | 21 | 33087859 | 33088602 | 33088225 | -1 | 1 | 247 | 481 |
p7 | OLIG2 | ENSP00000371794 | ENST00000382357 | ENSG00000205927 | OLIG2_HUMAN | 21 | 33321041 | 33322012 | 33321521 | 1 | 1 | 323 | 387 |
p8 | OLIG1 | ENSP00000371785 | ENST00000382348 | ENSG00000184221 | OLIG1_HUMAN | 21 | 33364423 | 33365238 | 33364825 | 1 | 1 | 271 | 296 |
p9 | C21orf54 | ENSP00000371780 | ENST00000382343 | ENSG00000205921 | 731650 | 21 | 33459847 | 33464344 | 33462756 | -1 | 4 | 108 | 92.8 |
p10 | IFNAR2 | ENSP00000316407 | ENST00000318433 | ENSG00000159110 | INAR2_HUMAN | 21 | 33536098 | 33557675 | 33554831 | 1 | 8 | 515 | 940.7 |
p11 | IL10RB | ENSP00000371578 | ENST00000382143 | ENSG00000159113 | I10R2_HUMAN | 21 | 33560641 | 33590532 | 33574079 | 1 | 7 | 325 | 671.7 |
p12 | IFNAR1 | ENSP00000371499 | ENST00000382067 | ENSG00000142166 | INAR1_HUMAN | 21 | 33619231 | 33649725 | 33643310 | 1 | 11 | 557 | 1033.1 |
p13 | IFNGR2 | ENSP00000371425 | ENST00000381995 | ENSG00000159128 | - | 21 | 33697720 | 33731139 | 33721123 | 1 | 8 | 356 | 651.3 |
p14 | TMEM50B | ENSP00000371390 | ENST00000381964 | ENSG00000142188 | TM50B_HUMAN | 21 | 33744995 | 33763062 | 33759556 | -1 | 6 | 158 | 260.3 |
p15 | CU055_HUMAN | ENSP00000320303 | ENST00000314399 | ENSG00000177692 | CU055_HUMAN | 21 | 33782404 | 33783570 | 33782983 | -1 | 1 | 388 | 730 |
Parameter used for the loci-alignments
qLoci-Score_CutOff: 100 bitsqLoci-MaxProtOverlap: 40 aa
loci size factor: 2 (additional loci size constraint: 0 nt)
loci-grouping type: loci intervalls
max distance between non-highlighted (orange) target columns: 500000 nt
RelativeScore color index:
<= 33 | <= 66 | <= 100 | <= 133 | <= 166 | <= 200 | <= 233 | <= 266 | <= 300 | <= 333 | <= 366 | <= 400 | <= 433 | <= 466 | <= 500 | <= 533 | <= 566 | <= 600 | <= 633 | <= 666 | <= 700 | <= 733 | <= 766 | <= 800 | <= 833 | <= 866 | <= 900 | <= 933 | <= 966 | <= 1000 | relSc>1000 |
region 1 (region 1 for Hsap)
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 21 -i 32869645:33783570 -f 69e4 some_geneID_to_be_selected
scoreRatio_sum=1070 log_scoreRatio_sum=59.55 focal_scoreRatio_sum=298.34
AlnScore=13998 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Homo_sapiens
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000334495 | CU077_HUMAN | q1 | q1 | 209 | 21 | 32869645 | 32870022 | -1 | 1 | 100% | 88.9% | 378 | 0.57 / 0.01 = 57 | noComparaHits: CU077_HUMAN | 1 |
p2 | q2 | +/+ | ENSP00000372115 | TCP10L | q2 | q2 | 376.2 | 21 | 32870958 | 32878485 | -1 | 4 | 97.7% | 99.5% | 633 | 0.25 / 0.01 = 25 | within_species_paralog: TCP10L | 1 |
p3 | q3 | +/+ | ENSP00000348900 | C21orf59 | q3 | q3 | 549.4 | 21 | 32896047 | 32906424 | -1 | 6 | 94.1% | 97.5% | 831 | 0.74 / 0.01 = 74 | noComparaHits: C21orf59 | 1 |
p4 | q4 | +/+ | ENSP00000322234 | SYNJ1 | q4 | q4 | 2901.2 | 21 | 32925179 | 33021077 | -1 | 24 | 91.2% | 96.4% | 4482 | 0.7 / 0.01 = 70 | within_species_paralog: SYNJ1 | 1 |
p5 | q5 | +/+ | ENSP00000371862 | GCFC_HUMAN | q5 | q5 | 1648.9 | 21 | 33029135 | 33065850 | -1 | 16 | 93% | 97.7% | 2598 | 0.95 / 0.01 = 95 | within_species_paralog: GCFC_HUMAN | 1 |
p6 | q6 | +/+ | ENSP00000371810 | CU062_HUMAN | q6 | q6 | 481 | 21 | 33087862 | 33088602 | -1 | 1 | 100% | 100% | 741 | 1 / 0.01 = 100 | noComparaHits: ENSG00000159100
; CU062_HUMAN ; C21orf49 |
1 |
p7 | q7 | +/+ | ENSP00000371794 | OLIG2 | q7 | q7 | 387 | 21 | 33321041 | 33322009 | 1 | 1 | 100% | 96% | 969 | 0.45 / 0.01 = 45 | within_species_paralog: OLIG2 | 1 |
p8 | q8 | +/+ | ENSP00000371785 | OLIG1 | q8 | q8 | 296 | 21 | 33364423 | 33365235 | 1 | 1 | 100% | 80.8% | 813 | 0.72 / 0.01 = 72 | within_species_paralog: OLIG1 | 1 |
p9 | --- | gapq | ENSP00000371780 | C21orf54 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q9 | +/+ | ENSP00000316407 | IFNAR2 | q9 | q9 | 940.7 | 21 | 33539119 | 33557672 | 1 | 6 | 94.2% | 96.9% | 1470 | 1 / 0.01 = 100 | within_species_paralog: IFNAR2 | 1 |
p11 | q10 | +/+ | ENSP00000371578 | IL10RB | q10 | q10 | 671.7 | 21 | 33562553 | 33590529 | 1 | 6 | 96.6% | 93.1% | 1005 | 1 / 0.01 = 100 | within_species_paralog: IL10RB | 1 |
p12 | q11 | +/+ | ENSP00000371499 | IFNAR1 | q11 | q11 | 1033.1 | 21 | 33629684 | 33649722 | 1 | 9 | 89.4% | 95.1% | 1587 | 1 / 0.01 = 100 | within_species_paralog: IFNAR1 | 1 |
p13 | q12 | +/+ | ENSP00000371425 | IFNGR2 | q12 | q12 | 651.3 | 21 | 33709079 | 33731136 | 1 | 6 | 86.2% | 93.4% | 987 | 1 / 0.01 = 100 | within_species_paralog: IFNGR2 | 1 |
p14 | q13 | +/+ | ENSP00000371390 | TMEM50B | q13 | q13 | 260.3 | 21 | 33754576 | 33763062 | -1 | 4 | 81.6% | 91.4% | 417 | 0.32 / 0.01 = 32 | within_species_paralog: TMEM50B | 1 |
p15 | q14 | +/+ | ENSP00000320303 | CU055_HUMAN | q14 | q14 | 730 | 21 | 33782407 | 33783570 | -1 | 1 | 100% | 100% | 1164 | 1 / 0.01 = 100 | noComparaHits: CU055_HUMAN | 1 |
region 2 (region 1 for Mmul)
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 3 -i 13067208:13937973 -f 65e4 some_geneID_to_be_selected
scoreRatio_sum=345.28 log_scoreRatio_sum=34.57 focal_scoreRatio_sum=114.62
AlnScore=12368 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Macaca_mulatta
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000334495 | CU077_HUMAN | q1 | q1 | 147 | 3 | 13937689 | 13937973 | 1 | 1 | 75.4% | 82.1% | 285 | 0.57 / 0.29 = 1.97 | noComparaHits: | 1 |
p2 | q2 | +/+ | ENSP00000372115 | TCP10L | q2 | q2 | 302.7 | 3 | 13928859 | 13936443 | 1 | 4 | 94.9% | 82% | 612 | 0.25 / 0.19 = 1.32 | ortholog_one2one: TCP10L | 1 |
p3 | q3 | +/+ | ENSP00000348900 | C21orf59 | q3 | q3 | 546.2 | 3 | 13908925 | 13920695 | 1 | 6 | 92.8% | 93.1% | 858 | 0.74 / 0.01 = 74 | ortholog_one2one: C21orf59 | 1 |
p4 | q4 | +/+ | ENSP00000322234 | SYNJ1 | q4 | q4 | 2610.3 | 3 | 13826840 | 13900296 | 1 | 22 | 83.9% | 95.6% | 4128 | 0.7 / 0.1 = 7 | ortholog_one2one: SYNJ1 | 1 |
p5 | q5 | +/+ | ENSP00000371862 | GCFC_HUMAN | q5 | q5 | 1649.7 | 3 | 13756663 | 13793351 | 1 | 16 | 94.4% | 93.5% | 2757 | 0.95 / 0.01 = 95 | ortholog_one2one: GCFC_HUMAN | 1 |
p6 | q6 | +/+ | ENSP00000371810 | CU062_HUMAN | q6 | q6 | 351 | 3 | 13743942 | 13744538 | 1 | 1 | 80.6% | 86.4% | 597 | 1 / 0.27 = 3.7 | ortholog_one2one: CU062_HUMAN | 1 |
p7 | q7 | +/+ | ENSP00000371794 | OLIG2 | q7 | q7 | 384 | 3 | 13528433 | 13529401 | -1 | 1 | 100% | 89.2% | 969 | 0.45 / 0.01 = 45 | ortholog_one2one: OLIG2 | 1 |
p8 | q8 | +/+ | ENSP00000371785 | OLIG1 | q8 | q8 | 206 | 3 | 13485273 | 13486028 | -1 | 1 | 93.7% | 66.1% | 756 | 0.72 / 0.3 = 2.4 | ortholog_one2one: OLIG1 | 1 |
p9 | --- | gapq | ENSP00000371780 | C21orf54 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q9 | +/+ | ENSP00000316407 | IFNAR2 | q9 | q9 | 891.6 | 3 | 13293512 | 13312099 | -1 | 6 | 94.2% | 90.6% | 1473 | 1 / 0.05 = 20 | ortholog_one2one: IFNAR2 | 1 |
p11 | q10 | +/+ | ENSP00000371578 | IL10RB | q10 | q10 | 523.5 | 3 | 13268451 | 13288562 | -1 | 5 | 77.5% | 87.9% | 816 | 1 / 0.22 = 4.55 | ortholog_one2one: IL10RB | 1 |
p12 | q11 | +/+ | ENSP00000371499 | IFNAR1 | q11 | q11 | 967.7 | 3 | 13206277 | 13224033 | -1 | 9 | 96.1% | 84% | 1746 | 1 / 0.06 = 16.67 | ortholog_one2one: IFNAR1 | 1 |
p13 | q12 | +/+ | ENSP00000371425 | IFNGR2 | q12 | q12 | 609.3 | 3 | 13117459 | 13142122 | -1 | 6 | 84% | 87.4% | 999 | 1 / 0.06 = 16.67 | ortholog_one2one: IFNGR2 | 1 |
p14 | q13 | +/+ | ENSP00000371390 | TMEM50B | q13 | q13 | 261.4 | 3 | 13084908 | 13093323 | 1 | 4 | 79.1% | 99.2% | 381 | 0.32 / 0.01 = 32 | ortholog_one2one: TMEM50B | 1 |
p15 | q14 | +/+ | ENSP00000320303 | CU055_HUMAN | q14 | q14 | 696 | 3 | 13067208 | 13068371 | 1 | 1 | 100% | 95.4% | 1164 | 1 / 0.04 = 25 | ortholog_one2one: CU055_HUMAN | 1 |
region 3 (region 1 for Cfam)
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 31 -i 30313898:31133592 -f 61e4 some_geneID_to_be_selected
scoreRatio_sum=134.11 log_scoreRatio_sum=22.31 focal_scoreRatio_sum=28.8
AlnScore=8984 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Canis_familiaris
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000334495 | CU077_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000372115 | TCP10L | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000348900 | C21orf59 | q1 | q1 | 535.8 | 31 | 30313898 | 30322236 | -1 | 6 | 92.8% | 88.8% | 834 | 0.74 / 0.02 = 37 | ortholog_one2one: 607697 | 1 |
p4 | q2 | +/+ | ENSP00000322234 | SYNJ1 | q2 | q2 | 2777.3 | 31 | 30327237 | 30414848 | -1 | 24 | 91.5% | 89.8% | 4566 | 0.7 / 0.04 = 17.5 | ortholog_one2one: 478403 | 1 |
p5 | q3 | +/+ | ENSP00000371862 | GCFC_HUMAN | q3 | q3 | 1563.1 | 31 | 30423437 | 30456580 | -1 | 16 | 92.4% | 93.4% | 2610 | 0.95 / 0.05 = 19 | ortholog_one2one: 609740 | 1 |
p6 | q4 | +/+ | ENSP00000371810 | CU062_HUMAN | q4 | q4 | 292 | 31 | 30478341 | 30478916 | -1 | 1 | 77.7% | 75.5% | 576 | 1 / 0.39 = 2.56 | ortholog_one2one: CU062_HUMAN | 1 |
p7 | --- | gapq | ENSP00000371794 | OLIG2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q5 | +/+ | ENSP00000371785 | OLIG1 | q5 | q5 | 236 | 31 | 30736375 | 30737208 | 1 | 1 | 100% | 59% | 834 | 0.72 / 0.2 = 3.6 | noComparaHits: | 1 |
p9 | --- | gapq | ENSP00000371780 | C21orf54 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q6 | +/+ | ENSP00000316407 | IFNAR2 | q6 | q6 | 538.2 | 31 | 30889943 | 30907516 | 1 | 6 | 92.6% | 57.5% | 1476 | 1 / 0.42 = 2.38 | ortholog_one2one: 487737 | 1 |
p11 | q7 | +/+ | ENSP00000371578 | IL10RB | q7 | q7 | 526.2 | 31 | 30911492 | 30933152 | 1 | 6 | 94.5% | 71.2% | 1050 | 1 / 0.21 = 4.76 | ortholog_one2one: Q3HTU8_CANFA | 1 |
p12 | q8 | +/+ | ENSP00000371499 | IFNAR1 | q8 | q8 | 775.4 | 31 | 30978683 | 30991885 | 1 | 10 | 95.7% | 63.7% | 1800 | 1 / 0.24 = 4.17 | ortholog_one2one: 609830 | 1 |
p13 | q9 | +/+ | ENSP00000371425 | IFNGR2 | q9 | q9 | 488 | 31 | 31047971 | 31066731 | 1 | 6 | 87.1% | 71% | 960 | 1 / 0.25 = 4 | ortholog_one2one: 487739 | 1 |
p14 | q10 | +/+ | ENSP00000371390 | TMEM50B | q10 | q10 | 260.7 | 31 | 31088015 | 31093150 | -1 | 4 | 79.1% | 89.4% | 426 | 0.32 / 0.01 = 32 | ortholog_one2one: 478405 | 1 |
p15 | q11 | +/+ | ENSP00000320303 | CU055_HUMAN | q11 | q11 | 621 | 31 | 31132435 | 31133592 | -1 | 1 | 99.2% | 83.7% | 1158 | 1 / 0.14 = 7.14 | ortholog_one2one: CU055_HUMAN | 1 |
region 4 (region 1 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 1 -i 108461749:108780045 -f 24e4 some_geneID_to_be_selected
scoreRatio_sum=20.69 log_scoreRatio_sum=6.2 focal_scoreRatio_sum=5.32
AlnScore=4283 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000334495 | CU077_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000372115 | TCP10L | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000348900 | C21orf59 | q1 | q1 | 449.4 | 1 | 108461749 | 108468708 | -1 | 6 | 93.4% | 76.1% | 828 | 0.74 / 0.18 = 4.11 | ortholog_one2one: Q5ZIK5_CHICK | 1 |
p4 | q2 | +/+ | ENSP00000322234 | SYNJ1 | q2 | q2 | 2377.5 | 1 | 108472993 | 108531323 | -1 | 23 | 89.6% | 78.1% | 4431 | 0.7 / 0.18 = 3.89 | ortholog_one2one: SYNJ1 | 1 |
p5 | q3 | +/+ | ENSP00000371862 | GCFC_HUMAN | q3 | q3 | 1359.8 | 1 | 108537111 | 108561303 | -1 | 16 | 89.6% | 75.3% | 2838 | 0.95 / 0.17 = 5.59 | ortholog_one2one: 418500 | 1 |
p6 | q4 | +/+ | ENSP00000371810 | CU062_HUMAN | q4 | q4 | 189 | 1 | 108565272 | 108565847 | -1 | 1 | 77.7% | 53.1% | 576 | 1 / 0.6 = 1.67 | ortholog_one2one: 418501 | 1 |
p7 | --- | gapq | ENSP00000371794 | OLIG2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000371785 | OLIG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000371780 | C21orf54 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gapq | ENSP00000316407 | IFNAR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q5 | +/+ | ENSP00000371578 | IL10RB | q5 | q5 | 228 | 1 | 108705460 | 108710850 | 1 | 4 | 62.2% | 46.1% | 612 | 1 / 0.66 = 1.52 | ortholog_one2one: Q2PBB9_CHICK | 1 |
p12 | q6 | +/+ | ENSP00000371499 | IFNAR1 | q6 | q6 | 157.1 | 1 | 108729070 | 108740417 | 1 | 3 | 38.4% | 41.2% | 621 | 1 / 0.84 = 1.19 | ortholog_one2one: NP_990190.1 | 1 |
p13 | --- | gapq | ENSP00000371425 | IFNGR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q7 | +/+ | ENSP00000371390 | TMEM50B | q7 | q7 | 205 | 1 | 108771136 | 108774088 | -1 | 3 | 65.2% | 95.1% | 309 | 0.32 / 0.21 = 1.52 | ortholog_one2one: 418503 | 1 |
p15 | q8 | +/+ | ENSP00000320303 | CU055_HUMAN | q8 | q8 | 119 | 1 | 108779719 | 108780045 | -1 | 1 | 28.4% | 54.5% | 327 | 1 / 0.83 = 1.2 | noComparaHits: | 1 |
region 5 (region 2 for Mmul)
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 4 -i 164121348:164418139 -f 22e4 some_geneID_to_be_selected
scoreRatio_sum=2.36 log_scoreRatio_sum=0.13 focal_scoreRatio_sum=0.35
AlnScore=1273 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Macaca_mulatta
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
--- | q1 | gaps | - | - | - | q1 | - | - | - | - | - | - | - | - | - | - | - | - |
p1 | q2 | +/+ | ENSP00000334495 | CU077_HUMAN | q2 | q2 | 136 | 4 | 164128470 | 164128826 | 1 | 1 | 99.2% | 65.6% | 357 | 0.57 / 0.34 = 1.68 | noComparaHits: | 2 |
p2 | q3 | +/+ | ENSP00000372115 | TCP10L | q3 | q3 | 234.4 | 4 | 164121348 | 164127488 | 1 | 4 | 97.7% | 66.8% | 630 | 0.25 / 0.37 = 0.68 | noComparaHits: | 2 |
p3 | --- | gape | ENSP00000348900 | C21orf59 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000322234 | SYNJ1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000371862 | GCFC_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000371810 | CU062_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000371794 | OLIG2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000371785 | OLIG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000371780 | C21orf54 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000316407 | IFNAR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000371578 | IL10RB | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000371499 | IFNAR1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000371425 | IFNGR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000371390 | TMEM50B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000320303 | CU055_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 6 (region 3 for Mmul)
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 8 -i 108476035:108476406 -f 28e1 some_geneID_to_be_selected
scoreRatio_sum=2.67 log_scoreRatio_sum=0.98 focal_scoreRatio_sum=0.33
AlnScore=875 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Macaca_mulatta
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000334495 | CU077_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000372115 | TCP10L | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000348900 | C21orf59 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000322234 | SYNJ1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000371862 | GCFC_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000371810 | CU062_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000371794 | OLIG2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000371785 | OLIG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000371780 | C21orf54 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000316407 | IFNAR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000371578 | IL10RB | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gaps | ENSP00000371499 | IFNAR1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gaps | ENSP00000371425 | IFNGR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q1 | +/+ | ENSP00000371390 | TMEM50B | q1 | q1 | 228 | 8 | 108476035 | 108476406 | 1 | 1 | 78.5% | 93.5% | 372 | 0.32 / 0.12 = 2.67 | ortholog_one2many: ENSMMUG00000013750 | 2 |
p15 | --- | gape | ENSP00000320303 | CU055_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 7 (region 1 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_648 -i 3016:4756 -f 13e2 some_geneID_to_be_selected
scoreRatio_sum=2.96 log_scoreRatio_sum=1.09 focal_scoreRatio_sum=0.59
AlnScore=742 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000334495 | CU077_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000372115 | TCP10L | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000348900 | C21orf59 | q1 | q1 | 407.9 | contig_648 | 3016 | 4756 | 1 | 5 | 100% | 55.8% | 1113 | 0.74 / 0.25 = 2.96 | noComparaHits: ENSGACG00000020576 | 1 |
p4 | --- | gape | ENSP00000322234 | SYNJ1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000371862 | GCFC_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000371810 | CU062_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000371794 | OLIG2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000371785 | OLIG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000371780 | C21orf54 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000316407 | IFNAR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000371578 | IL10RB | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000371499 | IFNAR1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000371425 | IFNGR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000371390 | TMEM50B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000320303 | CU055_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 8 (region 2 for Hsap)
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 6 -i 167505623:167716432 -f 16e4 some_geneID_to_be_selected
scoreRatio_sum=1 log_scoreRatio_sum=0 focal_scoreRatio_sum=0.17
AlnScore=738 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Homo_sapiens
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
--- | q1 | gaps | - | - | - | q1 | - | - | - | - | - | - | - | - | - | - | - | - |
p1 | --- | gapq | ENSP00000334495 | CU077_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q2 | +/+ | ENSP00000372115 | TCP10L | q2 | q2 | 278.7 | 6 | 167710042 | 167716432 | -1 | 4 | 96.7% | 76.6% | 627 | 0.25 / 0.25 = 1 | within_species_paralog: TCP10 | 2 |
p3 | --- | gape | ENSP00000348900 | C21orf59 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000322234 | SYNJ1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000371862 | GCFC_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000371810 | CU062_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000371794 | OLIG2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000371785 | OLIG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000371780 | C21orf54 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000316407 | IFNAR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000371578 | IL10RB | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000371499 | IFNAR1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000371425 | IFNGR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000371390 | TMEM50B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000320303 | CU055_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 9 (region 3 for Hsap)
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 19 -i 57305428:57305793 -f 27e1 some_geneID_to_be_selected
scoreRatio_sum=1 log_scoreRatio_sum=0 focal_scoreRatio_sum=0.13
AlnScore=679 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Homo_sapiens
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000334495 | CU077_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000372115 | TCP10L | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000348900 | C21orf59 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000322234 | SYNJ1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000371862 | GCFC_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000371810 | CU062_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000371794 | OLIG2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000371785 | OLIG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000371780 | C21orf54 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000316407 | IFNAR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000371578 | IL10RB | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gaps | ENSP00000371499 | IFNAR1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gaps | ENSP00000371425 | IFNGR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q1 | +/+ | ENSP00000371390 | TMEM50B | q1 | q1 | 177 | 19 | 57305428 | 57305793 | -1 | 1 | 78.5% | 75% | 366 | 0.32 / 0.32 = 1 | noComparaHits: | 2 |
p15 | --- | gape | ENSP00000320303 | CU055_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 10 (region 4 for Mmul)
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 19 -i 58171677:58172046 -f 28e1 some_geneID_to_be_selected
scoreRatio_sum=0.8 log_scoreRatio_sum=-0.21 focal_scoreRatio_sum=0.1
AlnScore=590 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Macaca_mulatta
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000334495 | CU077_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000372115 | TCP10L | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000348900 | C21orf59 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000322234 | SYNJ1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000371862 | GCFC_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000371810 | CU062_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000371794 | OLIG2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000371785 | OLIG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000371780 | C21orf54 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000316407 | IFNAR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000371578 | IL10RB | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gaps | ENSP00000371499 | IFNAR1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gaps | ENSP00000371425 | IFNGR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q1 | +/+ | ENSP00000371390 | TMEM50B | q1 | q1 | 153.7 | 19 | 58171677 | 58172046 | -1 | 2 | 58.9% | 86% | 279 | 0.32 / 0.4 = 0.8 | noComparaHits: | 3 |
p15 | --- | gape | ENSP00000320303 | CU055_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 11 (region 2 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_7639 -i 275:1087 -f 61e1 some_geneID_to_be_selected
scoreRatio_sum=1.07 log_scoreRatio_sum=0.07 focal_scoreRatio_sum=1.07
AlnScore=571 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000334495 | CU077_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000372115 | TCP10L | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000348900 | C21orf59 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000322234 | SYNJ1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000371862 | GCFC_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000371810 | CU062_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q1 | +/+ | ENSP00000371794 | OLIG2 | q1 | q1 | 221 | contig_7639 | 275 | 1087 | -1 | 1 | 100% | 57.3% | 813 | 0.45 / 0.42 = 1.07 | noComparaHits: ENSGACG00000002152 | 1 |
p8 | --- | gape | ENSP00000371785 | OLIG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000371780 | C21orf54 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000316407 | IFNAR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000371578 | IL10RB | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000371499 | IFNAR1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000371425 | IFNGR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000371390 | TMEM50B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000320303 | CU055_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 12 (region 5 for Mmul)
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 4 -i 126349791:126350447 -f 49e1 some_geneID_to_be_selected
scoreRatio_sum=1.02 log_scoreRatio_sum=0.02 focal_scoreRatio_sum=1.02
AlnScore=550 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Macaca_mulatta
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000334495 | CU077_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000372115 | TCP10L | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000348900 | C21orf59 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000322234 | SYNJ1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000371862 | GCFC_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000371810 | CU062_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q1 | +/+ | ENSP00000371794 | OLIG2 | q1 | q1 | 213 | 4 | 126349791 | 126350447 | 1 | 1 | 76.8% | 57.4% | 657 | 0.45 / 0.44 = 1.02 | between_species_paralog: OLIG3 | 2 |
p8 | --- | gape | ENSP00000371785 | OLIG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000371780 | C21orf54 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000316407 | IFNAR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000371578 | IL10RB | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000371499 | IFNAR1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000371425 | IFNGR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000371390 | TMEM50B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000320303 | CU055_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 13 (region 2 for Cfam)
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 1 -i 32963439:32964080 -f 48e1 some_geneID_to_be_selected
scoreRatio_sum=1 log_scoreRatio_sum=0 focal_scoreRatio_sum=1
AlnScore=545 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Canis_familiaris
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000334495 | CU077_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000372115 | TCP10L | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000348900 | C21orf59 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000322234 | SYNJ1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000371862 | GCFC_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000371810 | CU062_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q1 | +/+ | ENSP00000371794 | OLIG2 | q1 | q1 | 211 | 1 | 32963439 | 32964080 | -1 | 1 | 75.5% | 56.6% | 642 | 0.45 / 0.45 = 1 | ortholog_one2many: 484005 | 1 |
p8 | --- | gape | ENSP00000371785 | OLIG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000371780 | C21orf54 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000316407 | IFNAR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000371578 | IL10RB | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000371499 | IFNAR1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000371425 | IFNGR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000371390 | TMEM50B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000320303 | CU055_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 14 (region 4 for Hsap)
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 6 -i 137856197:137856838 -f 48e1 some_geneID_to_be_selected
scoreRatio_sum=1 log_scoreRatio_sum=0 focal_scoreRatio_sum=1
AlnScore=542 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Homo_sapiens
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000334495 | CU077_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000372115 | TCP10L | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000348900 | C21orf59 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000322234 | SYNJ1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000371862 | GCFC_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000371810 | CU062_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q1 | +/+ | ENSP00000371794 | OLIG2 | q1 | q1 | 210 | 6 | 137856197 | 137856838 | -1 | 1 | 75.5% | 56.6% | 642 | 0.45 / 0.45 = 1 | within_species_paralog: OLIG3 | 2 |
p8 | --- | gape | ENSP00000371785 | OLIG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000371780 | C21orf54 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000316407 | IFNAR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000371578 | IL10RB | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000371499 | IFNAR1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000371425 | IFNGR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000371390 | TMEM50B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000320303 | CU055_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 15 (region 3 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_653 -i 109772:116290 -f 49e2 some_geneID_to_be_selected
scoreRatio_sum=1.94 log_scoreRatio_sum=0.66 focal_scoreRatio_sum=0.65
AlnScore=504 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000334495 | CU077_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000372115 | TCP10L | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000348900 | C21orf59 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000322234 | SYNJ1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q1 | +/+ | ENSP00000371862 | GCFC_HUMAN | q1 | q1 | 832.2 | contig_653 | 109772 | 116290 | -1 | 10 | 73.4% | 50.9% | 2490 | 0.95 / 0.49 = 1.94 | noComparaHits: ENSGACG00000020601 | 1 |
p6 | --- | gape | ENSP00000371810 | CU062_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000371794 | OLIG2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000371785 | OLIG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000371780 | C21orf54 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000316407 | IFNAR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000371578 | IL10RB | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000371499 | IFNAR1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000371425 | IFNGR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000371390 | TMEM50B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000320303 | CU055_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 16 (region 2 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 3 -i 56633133:56633726 -f 45e1 some_geneID_to_be_selected
scoreRatio_sum=0.9 log_scoreRatio_sum=-0.1 focal_scoreRatio_sum=0.9
AlnScore=498 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000334495 | CU077_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000372115 | TCP10L | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000348900 | C21orf59 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000322234 | SYNJ1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000371862 | GCFC_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000371810 | CU062_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q1 | +/+ | ENSP00000371794 | OLIG2 | q1 | q1 | 193 | 3 | 56633133 | 56633726 | 1 | 1 | 70.6% | 60.1% | 594 | 0.45 / 0.5 = 0.9 | ortholog_one2many: 428612 | 1 |
p8 | --- | gape | ENSP00000371785 | OLIG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000371780 | C21orf54 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000316407 | IFNAR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000371578 | IL10RB | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000371499 | IFNAR1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000371425 | IFNGR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000371390 | TMEM50B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000320303 | CU055_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 17 (region 4 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_647 -i 56164:67899 -f 88e2 some_geneID_to_be_selected
scoreRatio_sum=1.4 log_scoreRatio_sum=0.34 focal_scoreRatio_sum=0.35
AlnScore=495 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000334495 | CU077_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000372115 | TCP10L | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000348900 | C21orf59 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q1 | +/+ | ENSP00000322234 | SYNJ1 | q1 | q1 | 1437.8 | contig_647 | 56164 | 67899 | 1 | 16 | 56.1% | 65.4% | 3090 | 0.7 / 0.5 = 1.4 | noComparaHits: ENSGACG00000020575 | 1 |
p5 | --- | gape | ENSP00000371862 | GCFC_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000371810 | CU062_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000371794 | OLIG2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000371785 | OLIG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000371780 | C21orf54 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000316407 | IFNAR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000371578 | IL10RB | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000371499 | IFNAR1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000371425 | IFNGR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000371390 | TMEM50B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000320303 | CU055_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 18 (region 3 for Cfam)
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 2 -i 77404695:77409223 -f 34e2 some_geneID_to_be_selected
scoreRatio_sum=0.56 log_scoreRatio_sum=-0.57 focal_scoreRatio_sum=0.07
AlnScore=420 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Canis_familiaris
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000334495 | CU077_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000372115 | TCP10L | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000348900 | C21orf59 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000322234 | SYNJ1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000371862 | GCFC_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000371810 | CU062_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000371794 | OLIG2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000371785 | OLIG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000371780 | C21orf54 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000316407 | IFNAR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000371578 | IL10RB | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gaps | ENSP00000371499 | IFNAR1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gaps | ENSP00000371425 | IFNGR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q1 | +/+ | ENSP00000371390 | TMEM50B | q1 | q1 | 109.4 | 2 | 77404695 | 77409223 | -1 | 2 | 43.7% | 73.9% | 207 | 0.32 / 0.57 = 0.56 | between_species_paralog: 478181 | 2 |
p15 | --- | gape | ENSP00000320303 | CU055_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 19 (region 5 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_5037 -i 89711:90313 -f 45e1 some_geneID_to_be_selected
scoreRatio_sum=0.76 log_scoreRatio_sum=-0.26 focal_scoreRatio_sum=0.76
AlnScore=405 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000334495 | CU077_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000372115 | TCP10L | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000348900 | C21orf59 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000322234 | SYNJ1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000371862 | GCFC_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000371810 | CU062_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q1 | +/+ | ENSP00000371794 | OLIG2 | q1 | q1 | 157 | contig_5037 | 89711 | 90313 | -1 | 1 | 66.3% | 49.8% | 603 | 0.45 / 0.59 = 0.76 | noComparaHits: ENSGACG00000010412 | 2 |
p8 | --- | gape | ENSP00000371785 | OLIG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000371780 | C21orf54 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000316407 | IFNAR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000371578 | IL10RB | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000371499 | IFNAR1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000371425 | IFNGR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000371390 | TMEM50B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000320303 | CU055_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 20 (region 6 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_1187 -i 39789:40697 -f 68e1 some_geneID_to_be_selected
scoreRatio_sum=1.67 log_scoreRatio_sum=0.51 focal_scoreRatio_sum=0.19
AlnScore=390 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000334495 | CU077_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000372115 | TCP10L | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000348900 | C21orf59 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000322234 | SYNJ1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000371862 | GCFC_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000371810 | CU062_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000371794 | OLIG2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000371785 | OLIG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000371780 | C21orf54 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000316407 | IFNAR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000371578 | IL10RB | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gaps | ENSP00000371499 | IFNAR1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gaps | ENSP00000371425 | IFNGR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gaps | ENSP00000371390 | TMEM50B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | q1 | +/+ | ENSP00000320303 | CU055_HUMAN | q1 | q1 | 285 | contig_1187 | 39789 | 40697 | 1 | 1 | 77.6% | 48.2% | 909 | 1 / 0.6 = 1.67 | noComparaHits: ENSGACG00000012360 | 1 |
region 21 (region 3 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 3 -i 53713010:53746984 -f 25e3 some_geneID_to_be_selected
scoreRatio_sum=1.09 log_scoreRatio_sum=0.09 focal_scoreRatio_sum=0.27
AlnScore=358 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000334495 | CU077_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000372115 | TCP10L | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000348900 | C21orf59 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q1 | +/+ | ENSP00000322234 | SYNJ1 | q1 | q1 | 1039.4 | 3 | 53713010 | 53746984 | 1 | 13 | 48.6% | 55.4% | 2481 | 0.7 / 0.64 = 1.09 | between_species_paralog: SYNJ2 | 2 |
p5 | --- | gape | ENSP00000371862 | GCFC_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000371810 | CU062_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000371794 | OLIG2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000371785 | OLIG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000371780 | C21orf54 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000316407 | IFNAR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000371578 | IL10RB | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000371499 | IFNAR1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000371425 | IFNGR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000371390 | TMEM50B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000320303 | CU055_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 22 (region 7 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_7638 -i 17047:17613 -f 43e1 some_geneID_to_be_selected
scoreRatio_sum=1.13 log_scoreRatio_sum=0.12 focal_scoreRatio_sum=0.56
AlnScore=354 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000334495 | CU077_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000372115 | TCP10L | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000348900 | C21orf59 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000322234 | SYNJ1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000371862 | GCFC_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000371810 | CU062_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000371794 | OLIG2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q1 | +/+ | ENSP00000371785 | OLIG1 | q1 | q1 | 105 | contig_7638 | 17047 | 17589 | -1 | 1 | 57.2% | 47.8% | 543 | 0.72 / 0.64 = 1.13 | noComparaHits: | 1 |
p9 | --- | gape | ENSP00000371780 | C21orf54 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000316407 | IFNAR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000371578 | IL10RB | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000371499 | IFNAR1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000371425 | IFNGR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000371390 | TMEM50B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000320303 | CU055_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 23 (region 8 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_4002 -i 23870:24457 -f 44e1 some_geneID_to_be_selected
scoreRatio_sum=0.67 log_scoreRatio_sum=-0.39 focal_scoreRatio_sum=0.67
AlnScore=322 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000334495 | CU077_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000372115 | TCP10L | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000348900 | C21orf59 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000322234 | SYNJ1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000371862 | GCFC_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000371810 | CU062_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q1 | +/+ | ENSP00000371794 | OLIG2 | q1 | q1 | 125 | contig_4002 | 23870 | 24457 | -1 | 1 | 67.2% | 43.4% | 588 | 0.45 / 0.67 = 0.67 | noComparaHits: ENSGACG00000007415 | 3 |
p8 | --- | gape | ENSP00000371785 | OLIG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000371780 | C21orf54 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000316407 | IFNAR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000371578 | IL10RB | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000371499 | IFNAR1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000371425 | IFNGR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000371390 | TMEM50B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000320303 | CU055_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 24 (region 4 for Cfam)
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 1 -i 50560699:50605785 -f 34e3 some_geneID_to_be_selected
scoreRatio_sum=1 log_scoreRatio_sum=0 focal_scoreRatio_sum=0.25
AlnScore=295 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Canis_familiaris
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000334495 | CU077_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000372115 | TCP10L | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000348900 | C21orf59 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q1 | +/+ | ENSP00000322234 | SYNJ1 | q1 | q1 | 857.1 | 1 | 50560699 | 50605785 | 1 | 10 | 41.2% | 54.9% | 2121 | 0.7 / 0.7 = 1 | between_species_paralog: 484052 | 2 |
p5 | --- | gape | ENSP00000371862 | GCFC_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000371810 | CU062_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000371794 | OLIG2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000371785 | OLIG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000371780 | C21orf54 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000316407 | IFNAR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000371578 | IL10RB | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000371499 | IFNAR1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000371425 | IFNGR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000371390 | TMEM50B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000320303 | CU055_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 25 (region 5 for Hsap)
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 6 -i 158369775:158417807 -f 36e3 some_geneID_to_be_selected
scoreRatio_sum=1 log_scoreRatio_sum=0 focal_scoreRatio_sum=0.25
AlnScore=293 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Homo_sapiens
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000334495 | CU077_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000372115 | TCP10L | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000348900 | C21orf59 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q1 | +/+ | ENSP00000322234 | SYNJ1 | q1 | q1 | 852.7 | 6 | 158369775 | 158417807 | 1 | 10 | 41% | 56.2% | 2037 | 0.7 / 0.7 = 1 | within_species_paralog: SYNJ2 | 2 |
p5 | --- | gape | ENSP00000371862 | GCFC_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000371810 | CU062_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000371794 | OLIG2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000371785 | OLIG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000371780 | C21orf54 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000316407 | IFNAR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000371578 | IL10RB | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000371499 | IFNAR1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000371425 | IFNGR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000371390 | TMEM50B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000320303 | CU055_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 26 (region 6 for Hsap)
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 10 -i 20876106:20876357 -f 19e1 some_geneID_to_be_selected
scoreRatio_sum=1 log_scoreRatio_sum=0 focal_scoreRatio_sum=0.2
AlnScore=251 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Homo_sapiens
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000334495 | CU077_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000372115 | TCP10L | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000348900 | C21orf59 | q1 | q1 | 138 | 10 | 20876106 | 20876357 | 1 | 1 | 29% | 78.6% | 252 | 0.74 / 0.74 = 1 | noComparaHits: | 2 |
p4 | --- | gape | ENSP00000322234 | SYNJ1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000371862 | GCFC_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000371810 | CU062_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000371794 | OLIG2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000371785 | OLIG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000371780 | C21orf54 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000316407 | IFNAR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000371578 | IL10RB | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000371499 | IFNAR1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000371425 | IFNGR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000371390 | TMEM50B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000320303 | CU055_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 27 (region 5 for Cfam)
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 19 -i 52692607:52692849 -f 18e1 some_geneID_to_be_selected
scoreRatio_sum=0.96 log_scoreRatio_sum=-0.03 focal_scoreRatio_sum=0.19
AlnScore=229 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Canis_familiaris
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000334495 | CU077_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000372115 | TCP10L | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000348900 | C21orf59 | q1 | q1 | 126 | 19 | 52692607 | 52692849 | -1 | 1 | 29.7% | 77.9% | 243 | 0.74 / 0.77 = 0.96 | noComparaHits: 476140 | 2 |
p4 | --- | gape | ENSP00000322234 | SYNJ1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000371862 | GCFC_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000371810 | CU062_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000371794 | OLIG2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000371785 | OLIG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000371780 | C21orf54 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000316407 | IFNAR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000371578 | IL10RB | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000371499 | IFNAR1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000371425 | IFNGR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000371390 | TMEM50B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000320303 | CU055_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 28 (region 6 for Mmul)
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 4 -i 104848486:104897862 -f 37e3 some_geneID_to_be_selected
scoreRatio_sum=0.8 log_scoreRatio_sum=-0.21 focal_scoreRatio_sum=0.2
AlnScore=111 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Macaca_mulatta
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000334495 | CU077_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000372115 | TCP10L | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000348900 | C21orf59 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q1 | +/+ | ENSP00000322234 | SYNJ1 | q1 | q1 | 322.7 | 4 | 104848486 | 104897862 | -1 | 4 | 18.1% | 51.4% | 876 | 0.7 / 0.88 = 0.8 | between_species_paralog: SYNJ2 | 2 |
p5 | --- | gape | ENSP00000371862 | GCFC_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000371810 | CU062_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000371794 | OLIG2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000371785 | OLIG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000371780 | C21orf54 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000316407 | IFNAR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000371578 | IL10RB | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000371499 | IFNAR1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000371425 | IFNGR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000371390 | TMEM50B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000320303 | CU055_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 29 (region 4 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l Z -i 70113728:71752468 -f 12e5 some_geneID_to_be_selected
scoreRatio_sum=0.74 log_scoreRatio_sum=-0.29 focal_scoreRatio_sum=0.19
AlnScore=54 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000334495 | CU077_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000372115 | TCP10L | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000348900 | C21orf59 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q1 | +/+ | ENSP00000322234 | SYNJ1 | q1 | q1 | 157 | Z | 70113728 | 70114510 | -1 | 1 | 18.2% | 32.9% | 783 | 0.7 / 0.94 = 0.74 | noComparaHits: | 3 |
p5 | --- | gape | ENSP00000371862 | GCFC_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000371810 | CU062_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000371794 | OLIG2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000371785 | OLIG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000371780 | C21orf54 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000316407 | IFNAR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000371578 | IL10RB | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000371499 | IFNAR1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000371425 | IFNGR2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000371390 | TMEM50B | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000320303 | CU055_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |