Overview on processed synteny regions for OLIG2_ENSG00000205927_5e5.protein.info

p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
RankAlnOverviewAlnScoreRatioSumlogRatioSumfocalRatioSumTargetGenomechrstartPosendPoshitsCountqueryCovmeanIdentityoriscorecompara
1region1, score=1399813998107059.55298.34Homo_sapiens21 33321041 33322009 1 100% 96% 1 387 within_species_paralog: OLIG2
2region2, score=1236812368345.2834.57114.62Macaca_mulatta3 13528433 13529401 1 100% 89.2% -1 384 ortholog_one2one: OLIG2
3region3, score=89848984134.1122.3128.8Canis_familiaris31
4region4, score=4283428320.696.25.32Gallus_gallus1
5region5, score=127312732.360.130.35Macaca_mulatta4
6region6, score=8758752.670.980.33Macaca_mulatta8
7region7, score=7427422.961.090.59Gasterosteus_aculeatuscontig_648
8region8, score=738738100.17Homo_sapiens6
9region9, score=679679100.13Homo_sapiens19
10region10, score=5905900.8-0.210.1Macaca_mulatta19
11region11, score=5715711.070.071.07Gasterosteus_aculeatuscontig_7639 275 1087 1 100% 57.3% -1 221 noComparaHits: ENSGACG00000002152
12region12, score=5505501.020.021.02Macaca_mulatta4 126349791 126350447 1 76.8% 57.4% 1 213 between_species_paralog: OLIG3
13region13, score=545545101Canis_familiaris1 32963439 32964080 1 75.5% 56.6% -1 211 ortholog_one2many: 484005
14region14, score=542542101Homo_sapiens6 137856197 137856838 1 75.5% 56.6% -1 210 within_species_paralog: OLIG3
15region15, score=5045041.940.660.65Gasterosteus_aculeatuscontig_653
16region16, score=4984980.9-0.10.9Gallus_gallus3 56633133 56633726 1 70.6% 60.1% 1 193 ortholog_one2many: 428612
17region17, score=4954951.40.340.35Gasterosteus_aculeatuscontig_647
18region18, score=4204200.56-0.570.07Canis_familiaris2
19region19, score=4054050.76-0.260.76Gasterosteus_aculeatuscontig_5037 89711 90313 1 66.3% 49.8% -1 157 noComparaHits: ENSGACG00000010412
20region20, score=3903901.670.510.19Gasterosteus_aculeatuscontig_1187
21region21, score=3583581.090.090.27Gallus_gallus3
22region22, score=3543541.130.120.56Gasterosteus_aculeatuscontig_7638
23region23, score=3223220.67-0.390.67Gasterosteus_aculeatuscontig_4002 23870 24457 1 67.2% 43.4% -1 125 noComparaHits: ENSGACG00000007415
24region24, score=295295100.25Canis_familiaris1
25region25, score=293293100.25Homo_sapiens6
26region26, score=251251100.2Homo_sapiens10
27region27, score=2292290.96-0.030.19Canis_familiaris19
28region28, score=1111110.8-0.210.2Macaca_mulatta4
29region29, score=54540.74-0.290.19Gallus_gallusZ

Data table for reference protein loci

QueryProtein(s)=ENSP00000371794 (contained in p7)
QueryGenome=Homo_sapiens
ref-loci geneNameprotIDtransIDgeneIDprotNamechrstartPosendPosmeanPosorinumExonsprotLengthselfscore
p1 CU077_HUMAN ENSP00000334495 ENST00000334165 ENSG00000186842 CU077_HUMAN 21 32869642 32870022 32869828 -1 1 126 209
p2 TCP10L ENSP00000372115 ENST00000382669 ENSG00000166984 TCP1L_HUMAN 21 32870955 32878485 32876411 -1 4 215 376.2
p3 C21orf59 ENSP00000348900 ENST00000356507 ENSG00000159079 CU059_HUMAN 21 32896044 32906424 32898399 -1 7 290 549.4
p4 SYNJ1 ENSP00000322234 ENST00000322229 ENSG00000159082 SYNJ1_HUMAN 21 32925176 33021077 32951991 -1 31 1573 2901.2
p5 GCFC_HUMAN ENSP00000371862 ENST00000382425 ENSG00000159086 GCFC_HUMAN 21 33029132 33065850 33049536 -1 18 917 1648.9
p6 CU062_HUMAN ENSP00000371810 ENST00000382373 ENSG00000205929 CU062_HUMAN 21 33087859 33088602 33088225 -1 1 247 481
p7 OLIG2 ENSP00000371794 ENST00000382357 ENSG00000205927 OLIG2_HUMAN 21 33321041 33322012 33321521 1 1 323 387
p8 OLIG1 ENSP00000371785 ENST00000382348 ENSG00000184221 OLIG1_HUMAN 21 33364423 33365238 33364825 1 1 271 296
p9 C21orf54 ENSP00000371780 ENST00000382343 ENSG00000205921 731650 21 33459847 33464344 33462756 -1 4 108 92.8
p10 IFNAR2 ENSP00000316407 ENST00000318433 ENSG00000159110 INAR2_HUMAN 21 33536098 33557675 33554831 1 8 515 940.7
p11 IL10RB ENSP00000371578 ENST00000382143 ENSG00000159113 I10R2_HUMAN 21 33560641 33590532 33574079 1 7 325 671.7
p12 IFNAR1 ENSP00000371499 ENST00000382067 ENSG00000142166 INAR1_HUMAN 21 33619231 33649725 33643310 1 11 557 1033.1
p13 IFNGR2 ENSP00000371425 ENST00000381995 ENSG00000159128 - 21 33697720 33731139 33721123 1 8 356 651.3
p14 TMEM50B ENSP00000371390 ENST00000381964 ENSG00000142188 TM50B_HUMAN 21 33744995 33763062 33759556 -1 6 158 260.3
p15 CU055_HUMAN ENSP00000320303 ENST00000314399 ENSG00000177692 CU055_HUMAN 21 33782404 33783570 33782983 -1 1 388 730
total length of ref-loci (on slice) = 913929 (91e4)

Parameter used for the loci-alignments

qLoci-Score_CutOff: 100 bits
qLoci-MaxProtOverlap: 40 aa
loci size factor: 2 (additional loci size constraint: 0 nt)
loci-grouping type: loci intervalls
max distance between non-highlighted (orange) target columns: 500000 nt
RelativeScore color index:
<=
33
<=
66
<=
100
<=
133
<=
166
<=
200
<=
233
<=
266
<=
300
<=
333
<=
366
<=
400
<=
433
<=
466
<=
500
<=
533
<=
566
<=
600
<=
633
<=
666
<=
700
<=
733
<=
766
<=
800
<=
833
<=
866
<=
900
<=
933
<=
966
<=
1000
relSc>1000
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p1, q7 p1, q8 p1, q9 p1, q10 p1, q11 p1, q12 p1, q13 p1, q14 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p2, q7 p2, q8 p2, q9 p2, q10 p2, q11 p2, q12 p2, q13 p2, q14 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p3, q7 p3, q8 p3, q9 p3, q10 p3, q11 p3, q12 p3, q13 p3, q14 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p4, q7 p4, q8 p4, q9 p4, q10 p4, q11 p4, q12 p4, q13 p4, q14 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p5, q7 p5, q8 p5, q9 p5, q10 p5, q11 p5, q12 p5, q13 p5, q14 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p6, q7 p6, q8 p6, q9 p6, q10 p6, q11 p6, q12 p6, q13 p6, q14 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p7, q7 p7, q8 p7, q9 p7, q10 p7, q11 p7, q12 p7, q13 p7, q14 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p8, q7 p8, q8 p8, q9 p8, q10 p8, q11 p8, q12 p8, q13 p8, q14 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p9, q7 p9, q8 p9, q9 p9, q10 p9, q11 p9, q12 p9, q13 p9, q14 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p10, q7 p10, q8 p10, q9 p10, q10 p10, q11 p10, q12 p10, q13 p10, q14 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p11, q6 p11, q7 p11, q8 p11, q9 p11, q10 p11, q11 p11, q12 p11, q13 p11, q14 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p12, q6 p12, q7 p12, q8 p12, q9 p12, q10 p12, q11 p12, q12 p12, q13 p12, q14 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p13, q6 p13, q7 p13, q8 p13, q9 p13, q10 p13, q11 p13, q12 p13, q13 p13, q14 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p14, q6 p14, q7 p14, q8 p14, q9 p14, q10 p14, q11 p14, q12 p14, q13 p14, q14 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p15, q6 p15, q7 p15, q8 p15, q9 p15, q10 p15, q11 p15, q12 p15, q13 p15, q14
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

region 1 (region 1 for Hsap)
region1, score=13998 region1, score=13998
syntenyRegion: Homo_sapiens.glob01.21.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 21 -i 32869645:33783570 -f 69e4 some_geneID_to_be_selected
scoreRatio_sum=1070 log_scoreRatio_sum=59.55 focal_scoreRatio_sum=298.34
AlnScore=13998 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Homo_sapiens
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000334495 CU077_HUMAN q1 q1 209 21 32869645 32870022 -1 1 100% 88.9% 378 0.57 / 0.01 = 57 noComparaHits: CU077_HUMAN 1
p2 q2 +/+ ENSP00000372115 TCP10L q2 q2 376.2 21 32870958 32878485 -1 4 97.7% 99.5% 633 0.25 / 0.01 = 25 within_species_paralog: TCP10L 1
p3 q3 +/+ ENSP00000348900 C21orf59 q3 q3 549.4 21 32896047 32906424 -1 6 94.1% 97.5% 831 0.74 / 0.01 = 74 noComparaHits: C21orf59 1
p4 q4 +/+ ENSP00000322234 SYNJ1 q4 q4 2901.2 21 32925179 33021077 -1 24 91.2% 96.4% 4482 0.7 / 0.01 = 70 within_species_paralog: SYNJ1 1
p5 q5 +/+ ENSP00000371862 GCFC_HUMAN q5 q5 1648.9 21 33029135 33065850 -1 16 93% 97.7% 2598 0.95 / 0.01 = 95 within_species_paralog: GCFC_HUMAN 1
p6 q6 +/+ ENSP00000371810 CU062_HUMAN q6 q6 481 21 33087862 33088602 -1 1 100% 100% 741 1 / 0.01 = 100 noComparaHits: ENSG00000159100 ;
CU062_HUMAN ;
C21orf49
1
p7 q7 +/+ ENSP00000371794 OLIG2 q7 q7 387 21 33321041 33322009 1 1 100% 96% 969 0.45 / 0.01 = 45 within_species_paralog: OLIG2 1
p8 q8 +/+ ENSP00000371785 OLIG1 q8 q8 296 21 33364423 33365235 1 1 100% 80.8% 813 0.72 / 0.01 = 72 within_species_paralog: OLIG1 1
p9 --- gapq ENSP00000371780 C21orf54 noMatch --- - - - - - - - - - - - -
p10 q9 +/+ ENSP00000316407 IFNAR2 q9 q9 940.7 21 33539119 33557672 1 6 94.2% 96.9% 1470 1 / 0.01 = 100 within_species_paralog: IFNAR2 1
p11 q10 +/+ ENSP00000371578 IL10RB q10 q10 671.7 21 33562553 33590529 1 6 96.6% 93.1% 1005 1 / 0.01 = 100 within_species_paralog: IL10RB 1
p12 q11 +/+ ENSP00000371499 IFNAR1 q11 q11 1033.1 21 33629684 33649722 1 9 89.4% 95.1% 1587 1 / 0.01 = 100 within_species_paralog: IFNAR1 1
p13 q12 +/+ ENSP00000371425 IFNGR2 q12 q12 651.3 21 33709079 33731136 1 6 86.2% 93.4% 987 1 / 0.01 = 100 within_species_paralog: IFNGR2 1
p14 q13 +/+ ENSP00000371390 TMEM50B q13 q13 260.3 21 33754576 33763062 -1 4 81.6% 91.4% 417 0.32 / 0.01 = 32 within_species_paralog: TMEM50B 1
p15 q14 +/+ ENSP00000320303 CU055_HUMAN q14 q14 730 21 33782407 33783570 -1 1 100% 100% 1164 1 / 0.01 = 100 noComparaHits: CU055_HUMAN 1
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p1, q7 p1, q8 p1, q9 p1, q10 p1, q11 p1, q12 p1, q13 p1, q14 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p2, q7 p2, q8 p2, q9 p2, q10 p2, q11 p2, q12 p2, q13 p2, q14 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p3, q7 p3, q8 p3, q9 p3, q10 p3, q11 p3, q12 p3, q13 p3, q14 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p4, q7 p4, q8 p4, q9 p4, q10 p4, q11 p4, q12 p4, q13 p4, q14 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p5, q7 p5, q8 p5, q9 p5, q10 p5, q11 p5, q12 p5, q13 p5, q14 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p6, q7 p6, q8 p6, q9 p6, q10 p6, q11 p6, q12 p6, q13 p6, q14 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p7, q7 p7, q8 p7, q9 p7, q10 p7, q11 p7, q12 p7, q13 p7, q14 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p8, q7 p8, q8 p8, q9 p8, q10 p8, q11 p8, q12 p8, q13 p8, q14 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p9, q7 p9, q8 p9, q9 p9, q10 p9, q11 p9, q12 p9, q13 p9, q14 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p10, q7 p10, q8 p10, q9 p10, q10 p10, q11 p10, q12 p10, q13 p10, q14 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p11, q6 p11, q7 p11, q8 p11, q9 p11, q10 p11, q11 p11, q12 p11, q13 p11, q14 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p12, q6 p12, q7 p12, q8 p12, q9 p12, q10 p12, q11 p12, q12 p12, q13 p12, q14 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p13, q6 p13, q7 p13, q8 p13, q9 p13, q10 p13, q11 p13, q12 p13, q13 p13, q14 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p14, q6 p14, q7 p14, q8 p14, q9 p14, q10 p14, q11 p14, q12 p14, q13 p14, q14 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p15, q6 p15, q7 p15, q8 p15, q9 p15, q10 p15, q11 p15, q12 p15, q13 p15, q14
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

region 2 (region 1 for Mmul)
region2, score=12368 region2, score=12368
syntenyRegion: Macaca_mulatta.glob01.3.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 3 -i 13067208:13937973 -f 65e4 some_geneID_to_be_selected
scoreRatio_sum=345.28 log_scoreRatio_sum=34.57 focal_scoreRatio_sum=114.62
AlnScore=12368 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Macaca_mulatta
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000334495 CU077_HUMAN q1 q1 147 3 13937689 13937973 1 1 75.4% 82.1% 285 0.57 / 0.29 = 1.97 noComparaHits: 1
p2 q2 +/+ ENSP00000372115 TCP10L q2 q2 302.7 3 13928859 13936443 1 4 94.9% 82% 612 0.25 / 0.19 = 1.32 ortholog_one2one: TCP10L 1
p3 q3 +/+ ENSP00000348900 C21orf59 q3 q3 546.2 3 13908925 13920695 1 6 92.8% 93.1% 858 0.74 / 0.01 = 74 ortholog_one2one: C21orf59 1
p4 q4 +/+ ENSP00000322234 SYNJ1 q4 q4 2610.3 3 13826840 13900296 1 22 83.9% 95.6% 4128 0.7 / 0.1 = 7 ortholog_one2one: SYNJ1 1
p5 q5 +/+ ENSP00000371862 GCFC_HUMAN q5 q5 1649.7 3 13756663 13793351 1 16 94.4% 93.5% 2757 0.95 / 0.01 = 95 ortholog_one2one: GCFC_HUMAN 1
p6 q6 +/+ ENSP00000371810 CU062_HUMAN q6 q6 351 3 13743942 13744538 1 1 80.6% 86.4% 597 1 / 0.27 = 3.7 ortholog_one2one: CU062_HUMAN 1
p7 q7 +/+ ENSP00000371794 OLIG2 q7 q7 384 3 13528433 13529401 -1 1 100% 89.2% 969 0.45 / 0.01 = 45 ortholog_one2one: OLIG2 1
p8 q8 +/+ ENSP00000371785 OLIG1 q8 q8 206 3 13485273 13486028 -1 1 93.7% 66.1% 756 0.72 / 0.3 = 2.4 ortholog_one2one: OLIG1 1
p9 --- gapq ENSP00000371780 C21orf54 noMatch --- - - - - - - - - - - - -
p10 q9 +/+ ENSP00000316407 IFNAR2 q9 q9 891.6 3 13293512 13312099 -1 6 94.2% 90.6% 1473 1 / 0.05 = 20 ortholog_one2one: IFNAR2 1
p11 q10 +/+ ENSP00000371578 IL10RB q10 q10 523.5 3 13268451 13288562 -1 5 77.5% 87.9% 816 1 / 0.22 = 4.55 ortholog_one2one: IL10RB 1
p12 q11 +/+ ENSP00000371499 IFNAR1 q11 q11 967.7 3 13206277 13224033 -1 9 96.1% 84% 1746 1 / 0.06 = 16.67 ortholog_one2one: IFNAR1 1
p13 q12 +/+ ENSP00000371425 IFNGR2 q12 q12 609.3 3 13117459 13142122 -1 6 84% 87.4% 999 1 / 0.06 = 16.67 ortholog_one2one: IFNGR2 1
p14 q13 +/+ ENSP00000371390 TMEM50B q13 q13 261.4 3 13084908 13093323 1 4 79.1% 99.2% 381 0.32 / 0.01 = 32 ortholog_one2one: TMEM50B 1
p15 q14 +/+ ENSP00000320303 CU055_HUMAN q14 q14 696 3 13067208 13068371 1 1 100% 95.4% 1164 1 / 0.04 = 25 ortholog_one2one: CU055_HUMAN 1
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p1, q7 p1, q8 p1, q9 p1, q10 p1, q11 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p2, q7 p2, q8 p2, q9 p2, q10 p2, q11 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p3, q7 p3, q8 p3, q9 p3, q10 p3, q11 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p4, q7 p4, q8 p4, q9 p4, q10 p4, q11 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p5, q7 p5, q8 p5, q9 p5, q10 p5, q11 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p6, q7 p6, q8 p6, q9 p6, q10 p6, q11 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p7, q7 p7, q8 p7, q9 p7, q10 p7, q11 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p8, q7 p8, q8 p8, q9 p8, q10 p8, q11 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p9, q7 p9, q8 p9, q9 p9, q10 p9, q11 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p10, q7 p10, q8 p10, q9 p10, q10 p10, q11 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p11, q6 p11, q7 p11, q8 p11, q9 p11, q10 p11, q11 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p12, q6 p12, q7 p12, q8 p12, q9 p12, q10 p12, q11 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p13, q6 p13, q7 p13, q8 p13, q9 p13, q10 p13, q11 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p14, q6 p14, q7 p14, q8 p14, q9 p14, q10 p14, q11 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p15, q6 p15, q7 p15, q8 p15, q9 p15, q10 p15, q11
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

region 3 (region 1 for Cfam)
region3, score=8984 region3, score=8984
syntenyRegion: Canis_familiaris.glob01.31.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 31 -i 30313898:31133592 -f 61e4 some_geneID_to_be_selected
scoreRatio_sum=134.11 log_scoreRatio_sum=22.31 focal_scoreRatio_sum=28.8
AlnScore=8984 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Canis_familiaris
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000334495 CU077_HUMAN noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000372115 TCP10L noMatch --- - - - - - - - - - - - -
p3 q1 +/+ ENSP00000348900 C21orf59 q1 q1 535.8 31 30313898 30322236 -1 6 92.8% 88.8% 834 0.74 / 0.02 = 37 ortholog_one2one: 607697 1
p4 q2 +/+ ENSP00000322234 SYNJ1 q2 q2 2777.3 31 30327237 30414848 -1 24 91.5% 89.8% 4566 0.7 / 0.04 = 17.5 ortholog_one2one: 478403 1
p5 q3 +/+ ENSP00000371862 GCFC_HUMAN q3 q3 1563.1 31 30423437 30456580 -1 16 92.4% 93.4% 2610 0.95 / 0.05 = 19 ortholog_one2one: 609740 1
p6 q4 +/+ ENSP00000371810 CU062_HUMAN q4 q4 292 31 30478341 30478916 -1 1 77.7% 75.5% 576 1 / 0.39 = 2.56 ortholog_one2one: CU062_HUMAN 1
p7 --- gapq ENSP00000371794 OLIG2 noMatch --- - - - - - - - - - - - -
p8 q5 +/+ ENSP00000371785 OLIG1 q5 q5 236 31 30736375 30737208 1 1 100% 59% 834 0.72 / 0.2 = 3.6 noComparaHits: 1
p9 --- gapq ENSP00000371780 C21orf54 noMatch --- - - - - - - - - - - - -
p10 q6 +/+ ENSP00000316407 IFNAR2 q6 q6 538.2 31 30889943 30907516 1 6 92.6% 57.5% 1476 1 / 0.42 = 2.38 ortholog_one2one: 487737 1
p11 q7 +/+ ENSP00000371578 IL10RB q7 q7 526.2 31 30911492 30933152 1 6 94.5% 71.2% 1050 1 / 0.21 = 4.76 ortholog_one2one: Q3HTU8_CANFA 1
p12 q8 +/+ ENSP00000371499 IFNAR1 q8 q8 775.4 31 30978683 30991885 1 10 95.7% 63.7% 1800 1 / 0.24 = 4.17 ortholog_one2one: 609830 1
p13 q9 +/+ ENSP00000371425 IFNGR2 q9 q9 488 31 31047971 31066731 1 6 87.1% 71% 960 1 / 0.25 = 4 ortholog_one2one: 487739 1
p14 q10 +/+ ENSP00000371390 TMEM50B q10 q10 260.7 31 31088015 31093150 -1 4 79.1% 89.4% 426 0.32 / 0.01 = 32 ortholog_one2one: 478405 1
p15 q11 +/+ ENSP00000320303 CU055_HUMAN q11 q11 621 31 31132435 31133592 -1 1 99.2% 83.7% 1158 1 / 0.14 = 7.14 ortholog_one2one: CU055_HUMAN 1
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p1, q7 p1, q8 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p2, q7 p2, q8 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p3, q7 p3, q8 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p4, q7 p4, q8 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p5, q7 p5, q8 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p6, q7 p6, q8 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p7, q7 p7, q8 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p8, q7 p8, q8 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p9, q7 p9, q8 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p10, q7 p10, q8 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p11, q6 p11, q7 p11, q8 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p12, q6 p12, q7 p12, q8 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p13, q6 p13, q7 p13, q8 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p14, q6 p14, q7 p14, q8 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p15, q6 p15, q7 p15, q8
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

region 4 (region 1 for Ggal)
region4, score=4283 region4, score=4283
syntenyRegion: Gallus_gallus.glob01.1.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 1 -i 108461749:108780045 -f 24e4 some_geneID_to_be_selected
scoreRatio_sum=20.69 log_scoreRatio_sum=6.2 focal_scoreRatio_sum=5.32
AlnScore=4283 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Gallus_gallus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000334495 CU077_HUMAN noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000372115 TCP10L noMatch --- - - - - - - - - - - - -
p3 q1 +/+ ENSP00000348900 C21orf59 q1 q1 449.4 1 108461749 108468708 -1 6 93.4% 76.1% 828 0.74 / 0.18 = 4.11 ortholog_one2one: Q5ZIK5_CHICK 1
p4 q2 +/+ ENSP00000322234 SYNJ1 q2 q2 2377.5 1 108472993 108531323 -1 23 89.6% 78.1% 4431 0.7 / 0.18 = 3.89 ortholog_one2one: SYNJ1 1
p5 q3 +/+ ENSP00000371862 GCFC_HUMAN q3 q3 1359.8 1 108537111 108561303 -1 16 89.6% 75.3% 2838 0.95 / 0.17 = 5.59 ortholog_one2one: 418500 1
p6 q4 +/+ ENSP00000371810 CU062_HUMAN q4 q4 189 1 108565272 108565847 -1 1 77.7% 53.1% 576 1 / 0.6 = 1.67 ortholog_one2one: 418501 1
p7 --- gapq ENSP00000371794 OLIG2 noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000371785 OLIG1 noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000371780 C21orf54 noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000316407 IFNAR2 noMatch --- - - - - - - - - - - - -
p11 q5 +/+ ENSP00000371578 IL10RB q5 q5 228 1 108705460 108710850 1 4 62.2% 46.1% 612 1 / 0.66 = 1.52 ortholog_one2one: Q2PBB9_CHICK 1
p12 q6 +/+ ENSP00000371499 IFNAR1 q6 q6 157.1 1 108729070 108740417 1 3 38.4% 41.2% 621 1 / 0.84 = 1.19 ortholog_one2one: NP_990190.1 1
p13 --- gapq ENSP00000371425 IFNGR2 noMatch --- - - - - - - - - - - - -
p14 q7 +/+ ENSP00000371390 TMEM50B q7 q7 205 1 108771136 108774088 -1 3 65.2% 95.1% 309 0.32 / 0.21 = 1.52 ortholog_one2one: 418503 1
p15 q8 +/+ ENSP00000320303 CU055_HUMAN q8 q8 119 1 108779719 108780045 -1 1 28.4% 54.5% 327 1 / 0.83 = 1.2 noComparaHits: 1
p1 p1, q1 p1, q2 p1, q3 p2 p2, q1 p2, q2 p2, q3 p3 p3, q1 p3, q2 p3, q3 p4 p4, q1 p4, q2 p4, q3 p5 p5, q1 p5, q2 p5, q3 p6 p6, q1 p6, q2 p6, q3 p7 p7, q1 p7, q2 p7, q3 p8 p8, q1 p8, q2 p8, q3 p9 p9, q1 p9, q2 p9, q3 p10 p10, q1 p10, q2 p10, q3 p11 p11, q1 p11, q2 p11, q3 p12 p12, q1 p12, q2 p12, q3 p13 p13, q1 p13, q2 p13, q3 p14 p14, q1 p14, q2 p14, q3 p15 p15, q1 p15, q2 p15, q3
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

region 5 (region 2 for Mmul)
region5, score=1273 region5, score=1273
syntenyRegion: Macaca_mulatta.glob04.4.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 4 -i 164121348:164418139 -f 22e4 some_geneID_to_be_selected
scoreRatio_sum=2.36 log_scoreRatio_sum=0.13 focal_scoreRatio_sum=0.35
AlnScore=1273 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Macaca_mulatta
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
--- q1 gaps - - - q1 - - - - - - - - - - - -
p1 q2 +/+ ENSP00000334495 CU077_HUMAN q2 q2 136 4 164128470 164128826 1 1 99.2% 65.6% 357 0.57 / 0.34 = 1.68 noComparaHits: 2
p2 q3 +/+ ENSP00000372115 TCP10L q3 q3 234.4 4 164121348 164127488 1 4 97.7% 66.8% 630 0.25 / 0.37 = 0.68 noComparaHits: 2
p3 --- gape ENSP00000348900 C21orf59 noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000322234 SYNJ1 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000371862 GCFC_HUMAN noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000371810 CU062_HUMAN noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000371794 OLIG2 noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000371785 OLIG1 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000371780 C21orf54 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000316407 IFNAR2 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371578 IL10RB noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000371499 IFNAR1 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371425 IFNGR2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000371390 TMEM50B noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000320303 CU055_HUMAN noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

region 6 (region 3 for Mmul)
region6, score=875 region6, score=875
syntenyRegion: Macaca_mulatta.glob03.8.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 8 -i 108476035:108476406 -f 28e1 some_geneID_to_be_selected
scoreRatio_sum=2.67 log_scoreRatio_sum=0.98 focal_scoreRatio_sum=0.33
AlnScore=875 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Macaca_mulatta
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000334495 CU077_HUMAN noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000372115 TCP10L noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000348900 C21orf59 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000322234 SYNJ1 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000371862 GCFC_HUMAN noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000371810 CU062_HUMAN noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000371794 OLIG2 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000371785 OLIG1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000371780 C21orf54 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000316407 IFNAR2 noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000371578 IL10RB noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000371499 IFNAR1 noMatch --- - - - - - - - - - - - -
p13 --- gaps ENSP00000371425 IFNGR2 noMatch --- - - - - - - - - - - - -
p14 q1 +/+ ENSP00000371390 TMEM50B q1 q1 228 8 108476035 108476406 1 1 78.5% 93.5% 372 0.32 / 0.12 = 2.67 ortholog_one2many: ENSMMUG00000013750 2
p15 --- gape ENSP00000320303 CU055_HUMAN noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

region 7 (region 1 for Gacu)
region7, score=742 region7, score=742
syntenyRegion: Gasterosteus_aculeatus.glob10.contig_648.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_648 -i 3016:4756 -f 13e2 some_geneID_to_be_selected
scoreRatio_sum=2.96 log_scoreRatio_sum=1.09 focal_scoreRatio_sum=0.59
AlnScore=742 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Gasterosteus_aculeatus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000334495 CU077_HUMAN noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000372115 TCP10L noMatch --- - - - - - - - - - - - -
p3 q1 +/+ ENSP00000348900 C21orf59 q1 q1 407.9 contig_648 3016 4756 1 5 100% 55.8% 1113 0.74 / 0.25 = 2.96 noComparaHits: ENSGACG00000020576 1
p4 --- gape ENSP00000322234 SYNJ1 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000371862 GCFC_HUMAN noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000371810 CU062_HUMAN noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000371794 OLIG2 noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000371785 OLIG1 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000371780 C21orf54 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000316407 IFNAR2 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371578 IL10RB noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000371499 IFNAR1 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371425 IFNGR2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000371390 TMEM50B noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000320303 CU055_HUMAN noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

region 8 (region 2 for Hsap)
region8, score=738 region8, score=738
syntenyRegion: Homo_sapiens.glob03.6.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 6 -i 167505623:167716432 -f 16e4 some_geneID_to_be_selected
scoreRatio_sum=1 log_scoreRatio_sum=0 focal_scoreRatio_sum=0.17
AlnScore=738 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Homo_sapiens
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
--- q1 gaps - - - q1 - - - - - - - - - - - -
p1 --- gapq ENSP00000334495 CU077_HUMAN noMatch --- - - - - - - - - - - - -
p2 q2 +/+ ENSP00000372115 TCP10L q2 q2 278.7 6 167710042 167716432 -1 4 96.7% 76.6% 627 0.25 / 0.25 = 1 within_species_paralog: TCP10 2
p3 --- gape ENSP00000348900 C21orf59 noMatch --- - - - - - - - - - - - -
p4 --- gape ENSP00000322234 SYNJ1 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000371862 GCFC_HUMAN noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000371810 CU062_HUMAN noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000371794 OLIG2 noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000371785 OLIG1 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000371780 C21orf54 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000316407 IFNAR2 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371578 IL10RB noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000371499 IFNAR1 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371425 IFNGR2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000371390 TMEM50B noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000320303 CU055_HUMAN noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

region 9 (region 3 for Hsap)
region9, score=679 region9, score=679
syntenyRegion: Homo_sapiens.glob04.19.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 19 -i 57305428:57305793 -f 27e1 some_geneID_to_be_selected
scoreRatio_sum=1 log_scoreRatio_sum=0 focal_scoreRatio_sum=0.13
AlnScore=679 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Homo_sapiens
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000334495 CU077_HUMAN noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000372115 TCP10L noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000348900 C21orf59 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000322234 SYNJ1 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000371862 GCFC_HUMAN noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000371810 CU062_HUMAN noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000371794 OLIG2 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000371785 OLIG1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000371780 C21orf54 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000316407 IFNAR2 noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000371578 IL10RB noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000371499 IFNAR1 noMatch --- - - - - - - - - - - - -
p13 --- gaps ENSP00000371425 IFNGR2 noMatch --- - - - - - - - - - - - -
p14 q1 +/+ ENSP00000371390 TMEM50B q1 q1 177 19 57305428 57305793 -1 1 78.5% 75% 366 0.32 / 0.32 = 1 noComparaHits: 2
p15 --- gape ENSP00000320303 CU055_HUMAN noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

region 10 (region 4 for Mmul)
region10, score=590 region10, score=590
syntenyRegion: Macaca_mulatta.glob10.19.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 19 -i 58171677:58172046 -f 28e1 some_geneID_to_be_selected
scoreRatio_sum=0.8 log_scoreRatio_sum=-0.21 focal_scoreRatio_sum=0.1
AlnScore=590 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Macaca_mulatta
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000334495 CU077_HUMAN noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000372115 TCP10L noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000348900 C21orf59 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000322234 SYNJ1 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000371862 GCFC_HUMAN noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000371810 CU062_HUMAN noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000371794 OLIG2 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000371785 OLIG1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000371780 C21orf54 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000316407 IFNAR2 noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000371578 IL10RB noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000371499 IFNAR1 noMatch --- - - - - - - - - - - - -
p13 --- gaps ENSP00000371425 IFNGR2 noMatch --- - - - - - - - - - - - -
p14 q1 +/+ ENSP00000371390 TMEM50B q1 q1 153.7 19 58171677 58172046 -1 2 58.9% 86% 279 0.32 / 0.4 = 0.8 noComparaHits: 3
p15 --- gape ENSP00000320303 CU055_HUMAN noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

region 11 (region 2 for Gacu)
region11, score=571 region11, score=571
syntenyRegion: Gasterosteus_aculeatus.glob01.contig_7639.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_7639 -i 275:1087 -f 61e1 some_geneID_to_be_selected
scoreRatio_sum=1.07 log_scoreRatio_sum=0.07 focal_scoreRatio_sum=1.07
AlnScore=571 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Gasterosteus_aculeatus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000334495 CU077_HUMAN noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000372115 TCP10L noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000348900 C21orf59 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000322234 SYNJ1 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000371862 GCFC_HUMAN noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000371810 CU062_HUMAN noMatch --- - - - - - - - - - - - -
p7 q1 +/+ ENSP00000371794 OLIG2 q1 q1 221 contig_7639 275 1087 -1 1 100% 57.3% 813 0.45 / 0.42 = 1.07 noComparaHits: ENSGACG00000002152 1
p8 --- gape ENSP00000371785 OLIG1 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000371780 C21orf54 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000316407 IFNAR2 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371578 IL10RB noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000371499 IFNAR1 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371425 IFNGR2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000371390 TMEM50B noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000320303 CU055_HUMAN noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

region 12 (region 5 for Mmul)
region12, score=550 region12, score=550
syntenyRegion: Macaca_mulatta.glob02.4.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 4 -i 126349791:126350447 -f 49e1 some_geneID_to_be_selected
scoreRatio_sum=1.02 log_scoreRatio_sum=0.02 focal_scoreRatio_sum=1.02
AlnScore=550 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Macaca_mulatta
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000334495 CU077_HUMAN noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000372115 TCP10L noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000348900 C21orf59 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000322234 SYNJ1 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000371862 GCFC_HUMAN noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000371810 CU062_HUMAN noMatch --- - - - - - - - - - - - -
p7 q1 +/+ ENSP00000371794 OLIG2 q1 q1 213 4 126349791 126350447 1 1 76.8% 57.4% 657 0.45 / 0.44 = 1.02 between_species_paralog: OLIG3 2
p8 --- gape ENSP00000371785 OLIG1 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000371780 C21orf54 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000316407 IFNAR2 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371578 IL10RB noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000371499 IFNAR1 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371425 IFNGR2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000371390 TMEM50B noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000320303 CU055_HUMAN noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

region 13 (region 2 for Cfam)
region13, score=545 region13, score=545
syntenyRegion: Canis_familiaris.glob02.1.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 1 -i 32963439:32964080 -f 48e1 some_geneID_to_be_selected
scoreRatio_sum=1 log_scoreRatio_sum=0 focal_scoreRatio_sum=1
AlnScore=545 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Canis_familiaris
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000334495 CU077_HUMAN noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000372115 TCP10L noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000348900 C21orf59 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000322234 SYNJ1 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000371862 GCFC_HUMAN noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000371810 CU062_HUMAN noMatch --- - - - - - - - - - - - -
p7 q1 +/+ ENSP00000371794 OLIG2 q1 q1 211 1 32963439 32964080 -1 1 75.5% 56.6% 642 0.45 / 0.45 = 1 ortholog_one2many: 484005 1
p8 --- gape ENSP00000371785 OLIG1 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000371780 C21orf54 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000316407 IFNAR2 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371578 IL10RB noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000371499 IFNAR1 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371425 IFNGR2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000371390 TMEM50B noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000320303 CU055_HUMAN noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

region 14 (region 4 for Hsap)
region14, score=542 region14, score=542
syntenyRegion: Homo_sapiens.glob02.6.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 6 -i 137856197:137856838 -f 48e1 some_geneID_to_be_selected
scoreRatio_sum=1 log_scoreRatio_sum=0 focal_scoreRatio_sum=1
AlnScore=542 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Homo_sapiens
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000334495 CU077_HUMAN noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000372115 TCP10L noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000348900 C21orf59 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000322234 SYNJ1 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000371862 GCFC_HUMAN noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000371810 CU062_HUMAN noMatch --- - - - - - - - - - - - -
p7 q1 +/+ ENSP00000371794 OLIG2 q1 q1 210 6 137856197 137856838 -1 1 75.5% 56.6% 642 0.45 / 0.45 = 1 within_species_paralog: OLIG3 2
p8 --- gape ENSP00000371785 OLIG1 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000371780 C21orf54 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000316407 IFNAR2 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371578 IL10RB noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000371499 IFNAR1 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371425 IFNGR2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000371390 TMEM50B noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000320303 CU055_HUMAN noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

region 15 (region 3 for Gacu)
region15, score=504 region15, score=504
syntenyRegion: Gasterosteus_aculeatus.glob07.contig_653.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_653 -i 109772:116290 -f 49e2 some_geneID_to_be_selected
scoreRatio_sum=1.94 log_scoreRatio_sum=0.66 focal_scoreRatio_sum=0.65
AlnScore=504 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Gasterosteus_aculeatus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000334495 CU077_HUMAN noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000372115 TCP10L noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000348900 C21orf59 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000322234 SYNJ1 noMatch --- - - - - - - - - - - - -
p5 q1 +/+ ENSP00000371862 GCFC_HUMAN q1 q1 832.2 contig_653 109772 116290 -1 10 73.4% 50.9% 2490 0.95 / 0.49 = 1.94 noComparaHits: ENSGACG00000020601 1
p6 --- gape ENSP00000371810 CU062_HUMAN noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000371794 OLIG2 noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000371785 OLIG1 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000371780 C21orf54 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000316407 IFNAR2 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371578 IL10RB noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000371499 IFNAR1 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371425 IFNGR2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000371390 TMEM50B noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000320303 CU055_HUMAN noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

region 16 (region 2 for Ggal)
region16, score=498 region16, score=498
syntenyRegion: Gallus_gallus.glob02.3.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 3 -i 56633133:56633726 -f 45e1 some_geneID_to_be_selected
scoreRatio_sum=0.9 log_scoreRatio_sum=-0.1 focal_scoreRatio_sum=0.9
AlnScore=498 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Gallus_gallus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000334495 CU077_HUMAN noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000372115 TCP10L noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000348900 C21orf59 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000322234 SYNJ1 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000371862 GCFC_HUMAN noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000371810 CU062_HUMAN noMatch --- - - - - - - - - - - - -
p7 q1 +/+ ENSP00000371794 OLIG2 q1 q1 193 3 56633133 56633726 1 1 70.6% 60.1% 594 0.45 / 0.5 = 0.9 ortholog_one2many: 428612 1
p8 --- gape ENSP00000371785 OLIG1 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000371780 C21orf54 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000316407 IFNAR2 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371578 IL10RB noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000371499 IFNAR1 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371425 IFNGR2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000371390 TMEM50B noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000320303 CU055_HUMAN noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

region 17 (region 4 for Gacu)
region17, score=495 region17, score=495
syntenyRegion: Gasterosteus_aculeatus.glob09.contig_647.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_647 -i 56164:67899 -f 88e2 some_geneID_to_be_selected
scoreRatio_sum=1.4 log_scoreRatio_sum=0.34 focal_scoreRatio_sum=0.35
AlnScore=495 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Gasterosteus_aculeatus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000334495 CU077_HUMAN noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000372115 TCP10L noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000348900 C21orf59 noMatch --- - - - - - - - - - - - -
p4 q1 +/+ ENSP00000322234 SYNJ1 q1 q1 1437.8 contig_647 56164 67899 1 16 56.1% 65.4% 3090 0.7 / 0.5 = 1.4 noComparaHits: ENSGACG00000020575 1
p5 --- gape ENSP00000371862 GCFC_HUMAN noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000371810 CU062_HUMAN noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000371794 OLIG2 noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000371785 OLIG1 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000371780 C21orf54 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000316407 IFNAR2 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371578 IL10RB noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000371499 IFNAR1 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371425 IFNGR2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000371390 TMEM50B noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000320303 CU055_HUMAN noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

region 18 (region 3 for Cfam)
region18, score=420 region18, score=420
syntenyRegion: Canis_familiaris.glob10.2.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 2 -i 77404695:77409223 -f 34e2 some_geneID_to_be_selected
scoreRatio_sum=0.56 log_scoreRatio_sum=-0.57 focal_scoreRatio_sum=0.07
AlnScore=420 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Canis_familiaris
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000334495 CU077_HUMAN noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000372115 TCP10L noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000348900 C21orf59 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000322234 SYNJ1 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000371862 GCFC_HUMAN noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000371810 CU062_HUMAN noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000371794 OLIG2 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000371785 OLIG1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000371780 C21orf54 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000316407 IFNAR2 noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000371578 IL10RB noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000371499 IFNAR1 noMatch --- - - - - - - - - - - - -
p13 --- gaps ENSP00000371425 IFNGR2 noMatch --- - - - - - - - - - - - -
p14 q1 +/+ ENSP00000371390 TMEM50B q1 q1 109.4 2 77404695 77409223 -1 2 43.7% 73.9% 207 0.32 / 0.57 = 0.56 between_species_paralog: 478181 2
p15 --- gape ENSP00000320303 CU055_HUMAN noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

region 19 (region 5 for Gacu)
region19, score=405 region19, score=405
syntenyRegion: Gasterosteus_aculeatus.glob03.contig_5037.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_5037 -i 89711:90313 -f 45e1 some_geneID_to_be_selected
scoreRatio_sum=0.76 log_scoreRatio_sum=-0.26 focal_scoreRatio_sum=0.76
AlnScore=405 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Gasterosteus_aculeatus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000334495 CU077_HUMAN noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000372115 TCP10L noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000348900 C21orf59 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000322234 SYNJ1 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000371862 GCFC_HUMAN noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000371810 CU062_HUMAN noMatch --- - - - - - - - - - - - -
p7 q1 +/+ ENSP00000371794 OLIG2 q1 q1 157 contig_5037 89711 90313 -1 1 66.3% 49.8% 603 0.45 / 0.59 = 0.76 noComparaHits: ENSGACG00000010412 2
p8 --- gape ENSP00000371785 OLIG1 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000371780 C21orf54 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000316407 IFNAR2 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371578 IL10RB noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000371499 IFNAR1 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371425 IFNGR2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000371390 TMEM50B noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000320303 CU055_HUMAN noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

region 20 (region 6 for Gacu)
region20, score=390 region20, score=390
syntenyRegion: Gasterosteus_aculeatus.glob02.contig_1187.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_1187 -i 39789:40697 -f 68e1 some_geneID_to_be_selected
scoreRatio_sum=1.67 log_scoreRatio_sum=0.51 focal_scoreRatio_sum=0.19
AlnScore=390 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Gasterosteus_aculeatus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000334495 CU077_HUMAN noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000372115 TCP10L noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000348900 C21orf59 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000322234 SYNJ1 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000371862 GCFC_HUMAN noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000371810 CU062_HUMAN noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000371794 OLIG2 noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000371785 OLIG1 noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000371780 C21orf54 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000316407 IFNAR2 noMatch --- - - - - - - - - - - - -
p11 --- gaps ENSP00000371578 IL10RB noMatch --- - - - - - - - - - - - -
p12 --- gaps ENSP00000371499 IFNAR1 noMatch --- - - - - - - - - - - - -
p13 --- gaps ENSP00000371425 IFNGR2 noMatch --- - - - - - - - - - - - -
p14 --- gaps ENSP00000371390 TMEM50B noMatch --- - - - - - - - - - - - -
p15 q1 +/+ ENSP00000320303 CU055_HUMAN q1 q1 285 contig_1187 39789 40697 1 1 77.6% 48.2% 909 1 / 0.6 = 1.67 noComparaHits: ENSGACG00000012360 1
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

region 21 (region 3 for Ggal)
region21, score=358 region21, score=358
syntenyRegion: Gallus_gallus.glob05.3.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 3 -i 53713010:53746984 -f 25e3 some_geneID_to_be_selected
scoreRatio_sum=1.09 log_scoreRatio_sum=0.09 focal_scoreRatio_sum=0.27
AlnScore=358 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Gallus_gallus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000334495 CU077_HUMAN noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000372115 TCP10L noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000348900 C21orf59 noMatch --- - - - - - - - - - - - -
p4 q1 +/+ ENSP00000322234 SYNJ1 q1 q1 1039.4 3 53713010 53746984 1 13 48.6% 55.4% 2481 0.7 / 0.64 = 1.09 between_species_paralog: SYNJ2 2
p5 --- gape ENSP00000371862 GCFC_HUMAN noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000371810 CU062_HUMAN noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000371794 OLIG2 noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000371785 OLIG1 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000371780 C21orf54 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000316407 IFNAR2 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371578 IL10RB noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000371499 IFNAR1 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371425 IFNGR2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000371390 TMEM50B noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000320303 CU055_HUMAN noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

region 22 (region 7 for Gacu)
region22, score=354 region22, score=354
syntenyRegion: Gasterosteus_aculeatus.glob05.contig_7638.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_7638 -i 17047:17613 -f 43e1 some_geneID_to_be_selected
scoreRatio_sum=1.13 log_scoreRatio_sum=0.12 focal_scoreRatio_sum=0.56
AlnScore=354 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Gasterosteus_aculeatus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000334495 CU077_HUMAN noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000372115 TCP10L noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000348900 C21orf59 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000322234 SYNJ1 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000371862 GCFC_HUMAN noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000371810 CU062_HUMAN noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000371794 OLIG2 noMatch --- - - - - - - - - - - - -
p8 q1 +/+ ENSP00000371785 OLIG1 q1 q1 105 contig_7638 17047 17589 -1 1 57.2% 47.8% 543 0.72 / 0.64 = 1.13 noComparaHits: 1
p9 --- gape ENSP00000371780 C21orf54 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000316407 IFNAR2 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371578 IL10RB noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000371499 IFNAR1 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371425 IFNGR2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000371390 TMEM50B noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000320303 CU055_HUMAN noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

region 23 (region 8 for Gacu)
region23, score=322 region23, score=322
syntenyRegion: Gasterosteus_aculeatus.glob04.contig_4002.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_4002 -i 23870:24457 -f 44e1 some_geneID_to_be_selected
scoreRatio_sum=0.67 log_scoreRatio_sum=-0.39 focal_scoreRatio_sum=0.67
AlnScore=322 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Gasterosteus_aculeatus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000334495 CU077_HUMAN noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000372115 TCP10L noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000348900 C21orf59 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000322234 SYNJ1 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000371862 GCFC_HUMAN noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000371810 CU062_HUMAN noMatch --- - - - - - - - - - - - -
p7 q1 +/+ ENSP00000371794 OLIG2 q1 q1 125 contig_4002 23870 24457 -1 1 67.2% 43.4% 588 0.45 / 0.67 = 0.67 noComparaHits: ENSGACG00000007415 3
p8 --- gape ENSP00000371785 OLIG1 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000371780 C21orf54 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000316407 IFNAR2 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371578 IL10RB noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000371499 IFNAR1 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371425 IFNGR2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000371390 TMEM50B noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000320303 CU055_HUMAN noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

region 24 (region 4 for Cfam)
region24, score=295 region24, score=295
syntenyRegion: Canis_familiaris.glob05.1.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 1 -i 50560699:50605785 -f 34e3 some_geneID_to_be_selected
scoreRatio_sum=1 log_scoreRatio_sum=0 focal_scoreRatio_sum=0.25
AlnScore=295 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Canis_familiaris
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000334495 CU077_HUMAN noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000372115 TCP10L noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000348900 C21orf59 noMatch --- - - - - - - - - - - - -
p4 q1 +/+ ENSP00000322234 SYNJ1 q1 q1 857.1 1 50560699 50605785 1 10 41.2% 54.9% 2121 0.7 / 0.7 = 1 between_species_paralog: 484052 2
p5 --- gape ENSP00000371862 GCFC_HUMAN noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000371810 CU062_HUMAN noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000371794 OLIG2 noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000371785 OLIG1 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000371780 C21orf54 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000316407 IFNAR2 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371578 IL10RB noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000371499 IFNAR1 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371425 IFNGR2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000371390 TMEM50B noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000320303 CU055_HUMAN noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

region 25 (region 5 for Hsap)
region25, score=293 region25, score=293
syntenyRegion: Homo_sapiens.glob08.6.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 6 -i 158369775:158417807 -f 36e3 some_geneID_to_be_selected
scoreRatio_sum=1 log_scoreRatio_sum=0 focal_scoreRatio_sum=0.25
AlnScore=293 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Homo_sapiens
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000334495 CU077_HUMAN noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000372115 TCP10L noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000348900 C21orf59 noMatch --- - - - - - - - - - - - -
p4 q1 +/+ ENSP00000322234 SYNJ1 q1 q1 852.7 6 158369775 158417807 1 10 41% 56.2% 2037 0.7 / 0.7 = 1 within_species_paralog: SYNJ2 2
p5 --- gape ENSP00000371862 GCFC_HUMAN noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000371810 CU062_HUMAN noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000371794 OLIG2 noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000371785 OLIG1 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000371780 C21orf54 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000316407 IFNAR2 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371578 IL10RB noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000371499 IFNAR1 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371425 IFNGR2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000371390 TMEM50B noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000320303 CU055_HUMAN noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

region 26 (region 6 for Hsap)
region26, score=251 region26, score=251
syntenyRegion: Homo_sapiens.glob07.10.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 10 -i 20876106:20876357 -f 19e1 some_geneID_to_be_selected
scoreRatio_sum=1 log_scoreRatio_sum=0 focal_scoreRatio_sum=0.2
AlnScore=251 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Homo_sapiens
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000334495 CU077_HUMAN noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000372115 TCP10L noMatch --- - - - - - - - - - - - -
p3 q1 +/+ ENSP00000348900 C21orf59 q1 q1 138 10 20876106 20876357 1 1 29% 78.6% 252 0.74 / 0.74 = 1 noComparaHits: 2
p4 --- gape ENSP00000322234 SYNJ1 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000371862 GCFC_HUMAN noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000371810 CU062_HUMAN noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000371794 OLIG2 noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000371785 OLIG1 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000371780 C21orf54 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000316407 IFNAR2 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371578 IL10RB noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000371499 IFNAR1 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371425 IFNGR2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000371390 TMEM50B noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000320303 CU055_HUMAN noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

region 27 (region 5 for Cfam)
region27, score=229 region27, score=229
syntenyRegion: Canis_familiaris.glob04.19.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 19 -i 52692607:52692849 -f 18e1 some_geneID_to_be_selected
scoreRatio_sum=0.96 log_scoreRatio_sum=-0.03 focal_scoreRatio_sum=0.19
AlnScore=229 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Canis_familiaris
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000334495 CU077_HUMAN noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000372115 TCP10L noMatch --- - - - - - - - - - - - -
p3 q1 +/+ ENSP00000348900 C21orf59 q1 q1 126 19 52692607 52692849 -1 1 29.7% 77.9% 243 0.74 / 0.77 = 0.96 noComparaHits: 476140 2
p4 --- gape ENSP00000322234 SYNJ1 noMatch --- - - - - - - - - - - - -
p5 --- gape ENSP00000371862 GCFC_HUMAN noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000371810 CU062_HUMAN noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000371794 OLIG2 noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000371785 OLIG1 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000371780 C21orf54 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000316407 IFNAR2 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371578 IL10RB noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000371499 IFNAR1 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371425 IFNGR2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000371390 TMEM50B noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000320303 CU055_HUMAN noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

region 28 (region 6 for Mmul)
region28, score=111 region28, score=111
syntenyRegion: Macaca_mulatta.glob06.4.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 4 -i 104848486:104897862 -f 37e3 some_geneID_to_be_selected
scoreRatio_sum=0.8 log_scoreRatio_sum=-0.21 focal_scoreRatio_sum=0.2
AlnScore=111 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Macaca_mulatta
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000334495 CU077_HUMAN noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000372115 TCP10L noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000348900 C21orf59 noMatch --- - - - - - - - - - - - -
p4 q1 +/+ ENSP00000322234 SYNJ1 q1 q1 322.7 4 104848486 104897862 -1 4 18.1% 51.4% 876 0.7 / 0.88 = 0.8 between_species_paralog: SYNJ2 2
p5 --- gape ENSP00000371862 GCFC_HUMAN noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000371810 CU062_HUMAN noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000371794 OLIG2 noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000371785 OLIG1 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000371780 C21orf54 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000316407 IFNAR2 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371578 IL10RB noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000371499 IFNAR1 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371425 IFNGR2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000371390 TMEM50B noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000320303 CU055_HUMAN noMatch --- - - - - - - - - - - - -
p1 p1, q1 p2 p2, q1 p3 p3, q1 p4 p4, q1 p5 p5, q1 p6 p6, q1 p7 p7, q1 p8 p8, q1 p9 p9, q1 p10 p10, q1 p11 p11, q1 p12 p12, q1 p13 p13, q1 p14 p14, q1 p15 p15, q1
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

region 29 (region 4 for Ggal)
region29, score=54 region29, score=54
syntenyRegion: Gallus_gallus.glob03.Z.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l Z -i 70113728:71752468 -f 12e5 some_geneID_to_be_selected
scoreRatio_sum=0.74 log_scoreRatio_sum=-0.29 focal_scoreRatio_sum=0.19
AlnScore=54 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000371794 (contained in p7)
TargetGenome=Gallus_gallus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000334495 CU077_HUMAN noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000372115 TCP10L noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000348900 C21orf59 noMatch --- - - - - - - - - - - - -
p4 q1 +/+ ENSP00000322234 SYNJ1 q1 q1 157 Z 70113728 70114510 -1 1 18.2% 32.9% 783 0.7 / 0.94 = 0.74 noComparaHits: 3
p5 --- gape ENSP00000371862 GCFC_HUMAN noMatch --- - - - - - - - - - - - -
p6 --- gape ENSP00000371810 CU062_HUMAN noMatch --- - - - - - - - - - - - -
p7 --- gape ENSP00000371794 OLIG2 noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000371785 OLIG1 noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000371780 C21orf54 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000316407 IFNAR2 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371578 IL10RB noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000371499 IFNAR1 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000371425 IFNGR2 noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000371390 TMEM50B noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000320303 CU055_HUMAN noMatch --- - - - - - - - - - - - -