DHX15_ENSG00000109606_2e6.protein.info Alignment Results

Rank	AlnScore	RatioSum	logRatioSum	focalRatioSum	TargetGenome	chr	startPos	endPos	hitsCount	queryCov	meanIdentity	ori	score	compara
1	15988	1166	67.3	303.73	Homo_sapiens	4	24138648	24195114	14	95.5%	91.6%	-1	1623.4	within_species_paralog: DHX15
2	14394	569.92	48.1	186.5	Macaca_mulatta	5	19282591	19339823	14	95.5%	91.3%	-1	1622.4	ortholog_one2one: DHX15
3	12472	417.06	35.62	114.98	Canis_familiaris	3	88383320	88434677	13	92.5%	94%	1	1547	ortholog_one2one: 488856
4	9840	133.95	17.79	59.33	Gallus_gallus	4	76226722	76266240	13	92.7%	89.4%	1	1492.5	ortholog_one2one: Q5F3A9_CHICK
5	2680	11.91	3.89	7.18	Gasterosteus_aculeatus	contig_7166	33022	52442	13	86.4%	87.4%	-1	1412.9	noComparaHits: ENSGACG00000019549
6	2310	9.14	2.86	5.88	Gasterosteus_aculeatus	contig_3215	72789	78427	10	86.3%	76.7%	1	1356.3	noComparaHits: ENSGACG00000017826
7	1975	6.12	1.5	1.77	Canis_familiaris	28
8	1409	88.85	4.31	44.28	Gallus_gallus	4
9	1250	12.96	2.44	4.96	Macaca_mulatta	4	30235483	30244212	7	48.7%	53.7%	-1	481.4	between_species_paralog: Q5TM65_MACMU
10	1201	2.98	-0.12	0.53	Gallus_gallus	6
11	1185	2.15	0.14	0.62	Macaca_mulatta	13
12	1185	2.15	0.14	0.62	Macaca_mulatta	13
13	1117	2.46	-0.63	0.36	Gallus_gallus	13
14	1036	1.36	-1.01	0.19	Homo_sapiens	11
15	1034	1.34	-1.03	0.19	Macaca_mulatta	14
16	978	2	0	0.42	Homo_sapiens	10
17	975	26	3.26	8.67	Macaca_mulatta	5
18	927	1.71	0.54	0.57	Canis_familiaris	30
19	872	1	0	0.33	Homo_sapiens	8
20	831	3.19	1.16	0.25	Gasterosteus_aculeatus	contig_8251
21	824	1.21	-1.48	0.17	Macaca_mulatta	6
22	807	1.21	-1.55	0.17	Homo_sapiens	5
23	796	1.73	-0.3	0.37	Macaca_mulatta	9
24	771	1.08	-1.59	0.14	Canis_familiaris	24
25	759	1.26	-1.43	0.18	Canis_familiaris	4
26	693	0.4	-0.91	0.13	Homo_sapiens	4
27	672	0.38	-0.96	0.13	Canis_familiaris	16
28	671	0.38	-0.96	0.13	Gallus_gallus	4
29	656	0.36	-1.01	0.12	Homo_sapiens	2
30	571	1.14	0.13	0.28	Gallus_gallus	6
31	512	1.08	0.08	0.36	Gasterosteus_aculeatus	contig_7157
32	487	1.02	0.02	0.34	Gallus_gallus	7
33	476	0.92	-0.07	0.23	Gasterosteus_aculeatus	contig_1837
34	472	0.92	-0.07	0.23	Gasterosteus_aculeatus	contig_5107
35	467	0.91	-0.08	0.23	Canis_familiaris	25
36	466	0.91	-0.08	0.23	Homo_sapiens	8
37	465	0.91	-0.08	0.23	Macaca_mulatta	8
38	461	1	0	0.08	Homo_sapiens	9
39	453	0.96	-0.03	0.32	Canis_familiaris	19
40	448	1.52	-0.56	0.13	Gasterosteus_aculeatus	contig_5895
41	433	0.93	-0.06	0.31	Gasterosteus_aculeatus	contig_7645
42	424	0.89	-0.11	0.07	Macaca_mulatta	15
43	415	0.21	-1.55	0.07	Gasterosteus_aculeatus	contig_8176
44	408	0.21	-1.55	0.07	Canis_familiaris	3
45	403	0.88	-0.12	0.29	Gasterosteus_aculeatus	contig_7647
46	369	0.19	-1.65	0.06	Gallus_gallus	5
47	248	0.69	-0.36	0.23	Gallus_gallus	1
48	220	1.4	-0.71	0.79	Canis_familiaris	20	44104429	44104998	1	23.6%	40.5%	-1	137	noComparaHits: 476639
49	118	0.76	-0.26	0.76	Homo_sapiens	3	47862863	47864453	2	32.1%	40.3%	1	191.6	noComparaHits: DHX30

Data table for reference protein loci

QueryProtein(s)=ENSP00000336741 (contained in p4)
QueryGenome=Homo_sapiens

ref-loci	geneName	protID	transID	geneID	protName	chr	startPos	endPos	meanPos	ori	numExons	protLength	selfscore
p1	-	ENSP00000295296	ENST00000295296	ENSG00000163144	-	4	22204917	22205171	22205040	1	1	84	160
p2	GBA3	ENSP00000314501	ENST00000317327	ENSG00000176201	GBA3_HUMAN	4	22303737	22429602	22358409	1	5	455	928.6
p2	643751	ENSP00000282947	ENST00000282947	ENSG00000152994	643751	4	22338096	22338671	22338378	-1	1	191	368
p3	PPARGC1A	ENSP00000371556	ENST00000382122	ENSG00000109819	PRGC1_HUMAN	4	23406543	23500678	23425001	-1	13	798	1101
p4	DHX15	ENSP00000336741	ENST00000336812	ENSG00000109606	DHX15_HUMAN	4	24138645	24195114	24159624	-1	14	795	1623.4
p5	SOD3	ENSP00000226877	ENST00000226877	ENSG00000109610	SODE_HUMAN	4	24410242	24410964	24410599	1	1	240	443
p6	NP_775734.1	ENSP00000374264	ENST00000389613	ENSG00000181982	Q6ZUS6_HUMAN	4	24419112	24463899	24442261	-1	9	441	668.2
p7	LGI2	ENSP00000371548	ENST00000382114	ENSG00000153012	LGI2_HUMAN	4	24614171	24641413	24614984	-1	8	545	981.8
p8	UGTAP_HUMAN	ENSP00000351857	ENST00000358971	ENSG00000109618	UGTAP_HUMAN	4	24734651	24771089	24762725	-1	11	501	1011.8
p9	PI4K2B	ENSP00000264864	ENST00000264864	ENSG00000038210	NP_060793.1	4	24844884	24887907	24867356	1	10	481	948.6
p10	ZCCHC4	ENSP00000303468	ENST00000302874	ENSG00000168228	ZCHC4_HUMAN	4	24923530	24979884	24960218	1	13	513	1092.2
p11	ANAPC4	ENSP00000371506	ENST00000382074	ENSG00000053900	ANC4_HUMAN	4	24988148	25029102	25007615	1	28	808	1181.5
p12	P78389_HUMAN	ENSP00000308272	ENST00000309830	ENSG00000173025	P78389_HUMAN	4	25234055	25234195	25234121	1	1	47	92
p13	SLC34A2	ENSP00000371483	ENST00000382051	ENSG00000157765	NPT2B_HUMAN	4	25273221	25287469	25282426	1	12	690	1326
p14	NP_056002.1	ENSP00000264868	ENST00000264868	ENSG00000091490	NP_056002.1	4	25359145	25474232	25415279	-1	24	1097	2283.6
p15	Q9BRT5_HUMAN	ENSP00000317556	ENST00000326140	ENSG00000180408	Q9BRT5_HUMAN	4	25524917	25539911	25525073	1	3	106	130
p16	RBPSUH	ENSP00000345206	ENST00000342295	ENSG00000168214	SUH_HUMAN	4	25931477	26041727	26035425	1	11	500	980.4
p17	CCKAR	ENSP00000295589	ENST00000295589	ENSG00000163394	CCKAR_HUMAN	4	26092358	26100987	26093982	-1	5	428	779.5

total length of ref-loci (on slice) = 3896071 (39e5)

region 1 (region 1 for Hsap)

syntenyRegion: Homo_sapiens.glob01.4.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 4 -i 22204917:26100987 -f 29e5 some_geneID_to_be_selected
scoreRatio_sum=1166 log_scoreRatio_sum=67.3 focal_scoreRatio_sum=303.73
AlnScore=15988 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Homo_sapiens

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000295296	-	q1	q1	160	4	22204917	22205168	1	1	100%	100%	252	0.18 / 0.01 = 18	within_species_paralog: ENSG00000163144	1
---	q2	gapp	-	-	-	q2	-	-	-	-	-	-	-	-	-	-	-	-
p2	q3	+/+	ENSP00000314501	GBA3	q3	q3	928.6	4	22346701	22429599	1	4	95.8%	99.8%	1314	0.52 / 0.01 = 52	within_species_paralog: GBA3	1
p2	q3	+/+	ENSP00000282947	643751	q2	q3	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p3	q4	+/+	ENSP00000371556	PPARGC1A	q4	q4	1101	4	23412452	23495658	-1	7	75.3%	97.5%	1824	0.88 / 0.01 = 88	within_species_paralog: PPARGC1A	1
p4	q5	+/+	ENSP00000336741	DHX15	q5	q5	1623.4	4	24138648	24195114	-1	14	95.5%	91.6%	2493	0.67 / 0.01 = 67	within_species_paralog: DHX15	1
p5	q6	+/+	ENSP00000226877	SOD3	q6	q6	443	4	24410281	24410961	1	1	94.6%	100%	681	0.79 / 0.01 = 79	noComparaHits: SOD3	1
p6	q7	+/+	ENSP00000374264	NP_775734.1	q7	q7	668.2	4	24419112	24463899	-1	6	83.7%	98.1%	1125	1 / 0.01 = 100	noComparaHits: NP_775734.1	1
p7	q8	+/+	ENSP00000371548	LGI2	q8	q8	981.8	4	24614174	24641398	-1	5	87.5%	92.4%	1542	0.48 / 0.01 = 48	within_species_paralog: LGI2	1
p8	q9	+/+	ENSP00000351857	UGTAP_HUMAN	q9	q9	1011.8	4	24734654	24769905	-1	9	98.2%	82.4%	1758	1 / 0.01 = 100	noComparaHits: UGTAP_HUMAN	1
p9	q10	+/+	ENSP00000264864	PI4K2B	q10	q10	948.6	4	24844884	24887904	1	9	95.8%	97.7%	1434	0.48 / 0.01 = 48	within_species_paralog: PI4K2B	1
p10	q11	+/+	ENSP00000303468	ZCCHC4	q11	q11	1092.2	4	24923530	24979881	1	12	96.7%	91.1%	1644	1 / 0.01 = 100	noComparaHits: ZCCHC4	1
p11	q12	+/+	ENSP00000371506	ANAPC4	q12	q12	1181.5	4	24988148	25029090	1	15	69.2%	96.7%	1743	1 / 0.01 = 100	noComparaHits: ANAPC4	1
p12	---	gapq	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	q13	+/+	ENSP00000371483	SLC34A2	q13	q13	1326	4	25273221	25287466	1	12	99.1%	92.5%	2169	0.6 / 0.01 = 60	within_species_paralog: SLC34A2	1
p14	q14	+/+	ENSP00000264868	NP_056002.1	q14	q14	2283.6	4	25359148	25458584	-1	20	96.4%	94.7%	3333	1 / 0.01 = 100	noComparaHits: NP_056002.1	1
p15	q15	+/+	ENSP00000317556	Q9BRT5_HUMAN	q15	q15	130	4	25524917	25525147	1	1	72.6%	97.4%	231	1 / 0.01 = 100	noComparaHits: Q9BRT5_HUMAN	1
p16	q16	+/+	ENSP00000345206	RBPSUH	q16	q16	980.4	4	26016893	26041673	1	9	89.8%	97.4%	1377	0.51 / 0.01 = 51	within_species_paralog: RBPSUH	1
p17	q17	+/+	ENSP00000295589	CCKAR	q17	q17	779.5	4	26092373	26100987	-1	5	99.1%	93.4%	1404	0.55 / 0.01 = 55	within_species_paralog: CCKAR	1

region 2 (region 1 for Mmul)

syntenyRegion: Macaca_mulatta.glob01.5.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 5 -i 17483382:21271074 -f 28e5 some_geneID_to_be_selected
scoreRatio_sum=569.92 log_scoreRatio_sum=48.1 focal_scoreRatio_sum=186.5
AlnScore=14394 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Macaca_mulatta

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000314501	GBA3	q1	q1	907.4	5	17483382	17563975	1	4	95.8%	97.5%	1314	0.52 / 0.02 = 26	ortholog_one2one: GBA3	1
p2	q1	+/+	ENSP00000282947	643751	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p3	q2	+/+	ENSP00000371556	PPARGC1A	q2	q2	1139.9	5	18551988	18640323	-1	8	79.6%	96.7%	1926	0.88 / 0.01 = 88	ortholog_one2one: PPARGC1A	1
p4	q3	+/+	ENSP00000336741	DHX15	q3	q3	1622.4	5	19282591	19339823	-1	14	95.5%	91.3%	2490	0.67 / 0.01 = 67	ortholog_one2one: DHX15	1
p5	q4	+/+	ENSP00000226877	SOD3	q4	q4	419	5	19563083	19563760	1	1	94.2%	94.2%	678	0.79 / 0.05 = 15.8	ortholog_one2one: SOD3	1
p6	q5	+/+	ENSP00000374264	NP_775734.1	q5	q5	638.7	5	19572053	19616973	-1	6	83.4%	95.2%	1122	1 / 0.04 = 25	ortholog_one2one: NP_775734.1	1
p7	q6	+/+	ENSP00000371548	LGI2	q6	q6	959.8	5	19759308	19787734	-1	5	85.1%	93%	1503	0.48 / 0.02 = 24	ortholog_one2one: LGI2	1
p8	q7	+/+	ENSP00000351857	UGTAP_HUMAN	q7	q7	1067.8	5	19882500	19918966	-1	10	100%	86.3%	1755	1 / 0.01 = 100	ortholog_one2one: UGTAP_HUMAN	1
p9	q8	+/+	ENSP00000264864	PI4K2B	q8	q8	889.3	5	20000849	20036584	1	9	93.1%	93.8%	1401	0.48 / 0.06 = 8	ortholog_one2one: PI4K2B	1
p10	q9	+/+	ENSP00000303468	ZCCHC4	q9	q9	1032.6	5	20072698	20128080	1	11	91.8%	88.1%	1605	1 / 0.05 = 20	ortholog_one2one: ZCCHC4	1
p11	q10	+/+	ENSP00000371506	ANAPC4	q10	q10	1184.7	5	20135506	20176838	1	14	71.8%	88.2%	1965	1 / 0.01 = 100	ortholog_one2one: ANAPC4	1
p12	---	gapq	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	q11	+/+	ENSP00000371483	SLC34A2	q11	q11	1239.6	5	20438526	20453144	1	12	100%	87.5%	2190	0.6 / 0.06 = 10	ortholog_one2one: SLC34A2	1
p14	q12	+/+	ENSP00000264868	NP_056002.1	q12	q12	2080.1	5	20529370	20629064	-1	20	88.9%	91.1%	3168	1 / 0.08 = 12.5	ortholog_one2one: NP_056002.1	1
p15	q13	+/+	ENSP00000317556	Q9BRT5_HUMAN	q13	q13	123	5	20696345	20696572	1	1	71.7%	88.2%	228	1 / 0.05 = 20	ortholog_one2many: ENSMMUG00000006680	2
p16	q14	+/+	ENSP00000345206	RBPSUH	q14	q14	976.6	5	21190268	21214803	1	9	89.6%	95.9%	1395	0.51 / 0.01 = 51	ortholog_one2one: RBPSUH	1
p17	q15	+/+	ENSP00000295589	CCKAR	q15	q15	610.5	5	21262470	21271074	-1	4	89.3%	88.5%	1170	0.55 / 0.21 = 2.62	ortholog_one2one: CCKAR	1

region 3 (region 1 for Cfam)

syntenyRegion: Canis_familiaris.glob01.3.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 3 -i 86831804:91875152 -f 38e5 some_geneID_to_be_selected
scoreRatio_sum=417.06 log_scoreRatio_sum=35.62 focal_scoreRatio_sum=114.98
AlnScore=12472 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Canis_familiaris

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000314501	GBA3	q1	q1	833	3	89906387	89978094	-1	4	95.8%	86.7%	1332	0.52 / 0.1 = 5.2	ortholog_one2one: 488857	1
p2	q1	+/+	ENSP00000282947	643751	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p3	q2	+/+	ENSP00000371556	PPARGC1A	q2	q2	1149.2	3	89013812	89106493	1	8	79.7%	92.1%	2022	0.88 / 0.01 = 88	ortholog_one2one: 479127	1
p4	q3	+/+	ENSP00000336741	DHX15	q3	q3	1547	3	88383320	88434677	1	13	92.5%	94%	2310	0.67 / 0.04 = 16.75	ortholog_one2one: 488856	1
p5	q4	+/+	ENSP00000226877	SOD3	q4	q4	254	3	88208388	88208942	-1	1	75.4%	71.9%	555	0.79 / 0.42 = 1.88	ortholog_one2one: 488855	1
p6	q5	+/+	ENSP00000374264	NP_775734.1	q5	q5	576.9	3	88150371	88199146	1	8	90.5%	76.9%	1188	1 / 0.13 = 7.69	ortholog_one2one: 488854	1
p7	q6	+/+	ENSP00000371548	LGI2	q6	q6	992.8	3	88005724	88033534	1	6	88.3%	95.2%	1485	0.48 / 0.01 = 48	ortholog_one2one: 488853	1
p8	q7	+/+	ENSP00000351857	UGTAP_HUMAN	q7	q7	1012.3	3	87892799	87925401	1	10	98.2%	83.7%	1716	1 / 0.01 = 100	ortholog_one2one: 488852	1
p9	q8	+/+	ENSP00000264864	PI4K2B	q8	q8	730.7	3	87807019	87822682	-1	7	73.2%	90.4%	1062	0.48 / 0.22 = 2.18	ortholog_one2one: PI4K2B	1
p10	q9	+/+	ENSP00000303468	ZCCHC4	q9	q9	822.2	3	87745046	87788190	-1	9	80.1%	84.5%	1320	1 / 0.24 = 4.17	ortholog_one2one: 479125	1
p11	q10	+/+	ENSP00000371506	ANAPC4	q10	q10	1202.1	3	87702059	87738000	-1	15	75.4%	89.1%	1926	1 / 0.01 = 100	ortholog_one2one: 479123	1
p12	---	gapq	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	q11	+/+	ENSP00000371483	SLC34A2	q11	q11	1031.6	3	87509527	87522666	-1	12	88%	77.9%	1980	0.6 / 0.22 = 2.73	ortholog_one2one: 488850	1
p14	q12	+/+	ENSP00000264868	NP_056002.1	q12	q12	2109.4	3	87382199	87467362	1	19	95%	84.6%	3453	1 / 0.07 = 14.29	ortholog_one2one: 488849	1
p15	---	gapq	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	q13	+/+	ENSP00000345206	RBPSUH	q13	q13	947.3	3	86885621	86909185	-1	8	93.4%	87.1%	1584	0.51 / 0.03 = 17	ortholog_one2one: 479122	1
p17	q14	+/+	ENSP00000295589	CCKAR	q14	q14	726.9	3	86831804	86840161	1	5	99.5%	91.4%	1287	0.55 / 0.06 = 9.17	ortholog_one2one: CCKAR_CANFA	1

region 4 (region 1 for Ggal)

syntenyRegion: Gallus_gallus.glob01.4.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 4 -i 70911866:77778819 -f 52e5 some_geneID_to_be_selected
scoreRatio_sum=133.95 log_scoreRatio_sum=17.79 focal_scoreRatio_sum=59.33
AlnScore=9840 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Gallus_gallus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000314501	GBA3	q1	q1	359.3	4	77004802	77011360	-1	4	83.1%	51.3%	1113	0.52 / 0.61 = 0.85	noComparaHits:	2
p2	q1	+/+	ENSP00000282947	643751	q17	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p3	q2	+/+	ENSP00000371556	PPARGC1A	q2	q2	1127.4	4	76638603	76695699	1	9	83.6%	81.6%	2184	0.88 / 0.01 = 88	ortholog_one2one: Q60GU0_CHICK	1
p4	q3	+/+	ENSP00000336741	DHX15	q3	q3	1492.5	4	76226722	76266240	1	13	92.7%	89.4%	2280	0.67 / 0.08 = 8.38	ortholog_one2one: Q5F3A9_CHICK	1
p5	q4	+/+	ENSP00000226877	SOD3	q4	q4	248	4	76179564	76180238	-1	1	93.8%	51.5%	675	0.79 / 0.44 = 1.8	ortholog_one2one: 422810	1
---	q5	gapp	-	-	-	q5	-	-	-	-	-	-	-	-	-	-	-	-
p6	q6	+/+	ENSP00000374264	NP_775734.1	q6	q6	370.6	4	76135863	76155821	1	5	51.2%	77.8%	729	1 / 0.44 = 2.27	ortholog_one2one: NP_775734.1	1
p7	q7	+/+	ENSP00000371548	LGI2	q7	q7	915.6	4	76059033	76076053	1	6	88.3%	80.1%	1659	0.48 / 0.06 = 8	ortholog_one2one: Q1EGJ7_CHICK	1
p8	q8	+/+	ENSP00000351857	UGTAP_HUMAN	q8	q8	817.7	4	76012917	76033966	1	9	88.8%	71.1%	1608	1 / 0.19 = 5.26	ortholog_one2one: Q5F3Q6_CHICK	1
p9	q9	+/+	ENSP00000264864	PI4K2B	q9	q9	642.3	4	75988755	76004706	-1	7	69.2%	84.5%	1005	0.48 / 0.32 = 1.5	ortholog_one2one: Q5ZIK0_CHICK	1
p10	q10	+/+	ENSP00000303468	ZCCHC4	q10	q10	609.7	4	75977534	75985955	-1	8	70.8%	70.3%	1101	1 / 0.44 = 2.27	ortholog_one2one: ZCCHC4	1
p11	q11	+/+	ENSP00000371506	ANAPC4	q11	q11	755.7	4	75960113	75975491	-1	12	56.7%	71.6%	1455	1 / 0.36 = 2.78	ortholog_one2one: Q5ZJ92_CHICK	1
p12	---	gapq	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	q12	+/+	ENSP00000371483	SLC34A2	q12	q12	642.6	4	75884817	75896215	-1	7	71.7%	57.4%	1560	0.6 / 0.51 = 1.18	ortholog_one2one: NP_989805.1	1
p14	q13	+/+	ENSP00000264868	NP_056002.1	q13	q13	1440.2	4	75829836	75862211	1	17	81.9%	68.4%	2823	1 / 0.36 = 2.78	ortholog_one2one: 425233	1
p15	---	gapq	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	q14	+/+	ENSP00000345206	RBPSUH	q14	q14	897.4	4	75652634	75674045	-1	8	89%	88.5%	1407	0.51 / 0.08 = 6.38	ortholog_one2one: 422802	1
p17	q15	+/+	ENSP00000295589	CCKAR	q15	q15	600.7	4	75631103	75635973	1	4	87.4%	78.8%	1128	0.55 / 0.22 = 2.5	ortholog_one2one: 425983	1
---	q16	gape	-	-	-	q16	-	-	-	-	-	-	-	-	-	-	-	-
---	q17	gape	-	-	-	q17	-	-	-	-	-	-	-	-	-	-	-	-

region 5 (region 1 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob02.contig_7166.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_7166 -i 33022:92164 -f 44e3 some_geneID_to_be_selected
scoreRatio_sum=11.91 log_scoreRatio_sum=3.89 focal_scoreRatio_sum=7.18
AlnScore=2680 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000314501	GBA3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000282947	643751	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	q1	+/+	ENSP00000336741	DHX15	q1	q1	1412.9	contig_7166	33022	52442	-1	13	86.4%	87.4%	2238	0.67 / 0.12 = 5.58	noComparaHits: ENSGACG00000019549	1
p5	---	gapq	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	q2	+/+	ENSP00000374264	NP_775734.1	q2	q2	313.8	contig_7166	65138	67345	-1	5	50.8%	61.4%	840	1 / 0.53 = 1.89	noComparaHits: ENSGACG00000019569	1
p7	q3	+/+	ENSP00000371548	LGI2	q3	q3	693.4	contig_7166	78605	81884	-1	4	78.5%	70.5%	1311	0.48 / 0.29 = 1.66	noComparaHits: ENSGACG00000019575	2
p8	q4	+/+	ENSP00000351857	UGTAP_HUMAN	q4	q4	644.8	contig_7166	86229	92164	-1	7	77.2%	65.8%	1350	1 / 0.36 = 2.78	noComparaHits: ENSGACG00000019587	1
p9	---	gape	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295589	CCKAR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 6 (region 2 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob01.contig_3215.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_3215 -i 57404:78427 -f 16e3 some_geneID_to_be_selected
scoreRatio_sum=9.14 log_scoreRatio_sum=2.86 focal_scoreRatio_sum=5.88
AlnScore=2310 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000314501	GBA3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000282947	643751	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	q1	+/+	ENSP00000336741	DHX15	q1	q1	1356.3	contig_3215	72789	78427	1	10	86.3%	76.7%	2571	0.67 / 0.16 = 4.19	noComparaHits: ENSGACG00000017826	2
p5	q2	+/+	ENSP00000226877	SOD3	q2	q2	170	contig_3215	69697	70221	-1	1	73.3%	46.6%	525	0.79 / 0.61 = 1.3	noComparaHits: ENSGACG00000017840	1
p6	q3	+/+	ENSP00000374264	NP_775734.1	q3	q3	209.9	contig_3215	65437	67181	1	3	44.2%	51.8%	729	1 / 0.68 = 1.47	noComparaHits: ENSGACG00000017841	2
p7	q4	+/+	ENSP00000371548	LGI2	q4	q4	764.1	contig_3215	57404	61190	1	7	97.2%	61.3%	1737	0.48 / 0.22 = 2.18	noComparaHits: ENSGACG00000017845	1
p8	---	gape	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295589	CCKAR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 7 (region 2 for Cfam)

syntenyRegion: Canis_familiaris.glob02.28.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 28 -i 10332102:17684755 -f 55e5 some_geneID_to_be_selected
scoreRatio_sum=6.12 log_scoreRatio_sum=1.5 focal_scoreRatio_sum=1.77
AlnScore=1975 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Canis_familiaris

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000314501	GBA3	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p2	q1	+/+	ENSP00000282947	643751	q1	q1	356	28	10332102	10332680	-1	1	100%	95.9%	579	0.12 / 0.03 = 4	noComparaHits: ENSCAFG00000007554 ; 477771	1
p3	---	gapq	ENSP00000371556	PPARGC1A	q4	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gapq	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gapq	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	q2	/+	ENSP00000371548	LGI2	q2	q2	500.1	28	10998772	11003203	1	3	71%	57.6%	1182	0.48 / 0.49 = 0.98	between_species_paralog: 477777	2
p8	---	gapq	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q3	+/+	ENSP00000264864	PI4K2B	q3	q3	541	28	13888590	13916921	1	7	73.2%	66%	1131	0.48 / 0.42 = 1.14	between_species_paralog: 486824	2
---	q4	gapp	-	-	-	q4	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295589	CCKAR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 8 (region 2 for Ggal)

syntenyRegion: Gallus_gallus.glob03.4.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 4 -i 76638603:81453652 -f 36e5 some_geneID_to_be_selected
scoreRatio_sum=88.85 log_scoreRatio_sum=4.31 focal_scoreRatio_sum=44.28
AlnScore=1409 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Gallus_gallus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000314501	GBA3	q1	q1	359.3	4	77004802	77011360	-1	4	83.1%	51.3%	1113	0.52 / 0.61 = 0.85	noComparaHits:	2
p2	q1	+/+	ENSP00000282947	643751	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p3	q2	+/+	ENSP00000371556	PPARGC1A	q2	q2	1127.4	4	76638603	76695699	1	9	83.6%	81.6%	2184	0.88 / 0.01 = 88	ortholog_one2one: Q60GU0_CHICK	1
p4	---	gape	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000371548	LGI2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295589	CCKAR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 9 (region 2 for Mmul)

syntenyRegion: Macaca_mulatta.glob07.4.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 4 -i 30235483:37110773 -f 52e5 some_geneID_to_be_selected
scoreRatio_sum=12.96 log_scoreRatio_sum=2.44 focal_scoreRatio_sum=4.96
AlnScore=1250 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Macaca_mulatta

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000314501	GBA3	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p2	q1	+/+	ENSP00000282947	643751	q1	q1	363	4	37110201	37110773	1	1	100%	97.4%	573	0.12 / 0.01 = 12	between_species_paralog: ENSMMUG00000029727	1
p3	---	gapq	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	q2	/+	ENSP00000336741	DHX15	q2	q2	481.4	4	30235483	30244212	-1	7	48.7%	53.7%	1263	0.67 / 0.7 = 0.96	between_species_paralog: Q5TM65_MACMU	3
p5	---	gape	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000371548	LGI2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295589	CCKAR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 10 (region 3 for Ggal)

syntenyRegion: Gallus_gallus.glob02.6.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 6 -i 21390609:29116375 -f 58e5 some_geneID_to_be_selected
scoreRatio_sum=2.98 log_scoreRatio_sum=-0.12 focal_scoreRatio_sum=0.53
AlnScore=1201 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Gallus_gallus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000314501	GBA3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000282947	643751	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000371556	PPARGC1A	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	q1	+/+	ENSP00000371548	LGI2	q1	q1	561	6	21390609	21397686	-1	4	78.9%	54.9%	1425	0.48 / 0.42 = 1.14	between_species_paralog: Q1EGJ8_CHICK	2
p8	---	gapq	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q2	/+	ENSP00000264864	PI4K2B	q2	q2	561.4	6	23732264	23737176	-1	7	73%	69.9%	1086	0.48 / 0.4 = 1.2	between_species_paralog: 425291	2
---	q3	gapp	-	-	-	q3	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gapq	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gapq	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	q4	/+	ENSP00000295589	CCKAR	q4	q4	108	6	29115230	29116375	1	1	90.9%	26.5%	1146	0.55 / 0.86 = 0.64	noComparaHits: 428983	noData

region 11 (region 3 for Mmul)

syntenyRegion: Macaca_mulatta.glob03.13.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 13 -i 116019806:116877172 -f 64e4 some_geneID_to_be_selected
scoreRatio_sum=2.15 log_scoreRatio_sum=0.14 focal_scoreRatio_sum=0.62
AlnScore=1185 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Macaca_mulatta

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	/+	ENSP00000295296	-	q1	q1	134	13	116876921	116877172	1	1	100%	82.1%	252	0.18 / 0.16 = 1.13	noComparaHits: ZRANB3	3
p2	q2	/+	ENSP00000314501	GBA3	q2	q2	446.7	13	116348501	116350891	1	2	99.3%	47.3%	1368	0.52 / 0.51 = 1.02	between_species_paralog: LCT	2
p2	q2	/+	ENSP00000282947	643751	noMatch	q2	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p3	---	gape	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000371548	LGI2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295589	CCKAR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 12 (region 4 for Mmul)

syntenyRegion: Macaca_mulatta.glob04.13.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 13 -i 116316716:124037243 -f 58e5 some_geneID_to_be_selected
scoreRatio_sum=2.15 log_scoreRatio_sum=0.14 focal_scoreRatio_sum=0.62
AlnScore=1185 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Macaca_mulatta

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	/+	ENSP00000295296	-	q1	q1	134	13	116876921	116877172	1	1	100%	82.1%	252	0.18 / 0.16 = 1.13	noComparaHits: ZRANB3	3
p2	q2	/+	ENSP00000314501	GBA3	q2	q2	446.7	13	116348501	116350891	1	2	99.3%	47.3%	1368	0.52 / 0.51 = 1.02	between_species_paralog: LCT	2
p2	q2	/+	ENSP00000282947	643751	noMatch	q2	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p3	---	gape	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000371548	LGI2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295589	CCKAR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 13 (region 4 for Ggal)

syntenyRegion: Gallus_gallus.glob06.13.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 13 -i 7769298:15511284 -f 58e5 some_geneID_to_be_selected
scoreRatio_sum=2.46 log_scoreRatio_sum=-0.63 focal_scoreRatio_sum=0.36
AlnScore=1117 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Gallus_gallus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	/+	ENSP00000295296	-	q1	q1	126	13	15510984	15511284	1	2	88.1%	97.3%	225	0.18 / 0.21 = 0.86	ortholog_one2many: 415372	1
---	q2	gapp	-	-	-	q2	-	-	-	-	-	-	-	-	-	-	-	-
---	q3	gapp	-	-	-	q3	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gapq	ENSP00000314501	GBA3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gapq	ENSP00000282947	643751	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gapq	ENSP00000371556	PPARGC1A	q5	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gapq	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gapq	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000371548	LGI2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gapq	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	q4	/+	ENSP00000371483	SLC34A2	q4	q4	499.8	13	10214059	10217285	1	5	53%	63%	1239	0.6 / 0.62 = 0.97	between_species_paralog: Q9DDR8_CHICK	2
---	q5	gapp	-	-	-	q5	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gapq	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	q6	+/+	ENSP00000295589	CCKAR	q2	q6	100	13	8209957	8210883	1	1	81.5%	26.5%	927	0.55 / 0.87 = 0.63	noComparaHits: 427623	noData

region 14 (region 2 for Hsap)

syntenyRegion: Homo_sapiens.glob09.11.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 11 -i 3805372:7906695 -f 31e5 some_geneID_to_be_selected
scoreRatio_sum=1.36 log_scoreRatio_sum=-1.01 focal_scoreRatio_sum=0.19
AlnScore=1036 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Homo_sapiens

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000314501	GBA3	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p2	q1	+/+	ENSP00000282947	643751	q1	q1	246	11	3805372	3805944	-1	1	100%	59.2%	573	0.12 / 0.33 = 0.36	within_species_paralog: RHOG	6
p3	---	gapq	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gapq	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gapq	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000371548	LGI2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gapq	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gapq	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	q2	/+	ENSP00000295589	CCKAR	q2	q2	343.2	11	6247459	6249343	1	3	81.8%	51.3%	1026	0.55 / 0.55 = 1	within_species_paralog: CCKBR	2

region 15 (region 5 for Mmul)

syntenyRegion: Macaca_mulatta.glob09.14.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 14 -i 63439288:69718223 -f 47e5 some_geneID_to_be_selected
scoreRatio_sum=1.34 log_scoreRatio_sum=-1.03 focal_scoreRatio_sum=0.19
AlnScore=1034 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Macaca_mulatta

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000314501	GBA3	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p2	q1	+/+	ENSP00000282947	643751	q1	q1	246	14	69717651	69718223	1	1	100%	59.7%	573	0.12 / 0.33 = 0.36	between_species_paralog: RHOG	7
p3	---	gapq	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gapq	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gapq	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000371548	LGI2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gapq	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gapq	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	q2	/+	ENSP00000295589	CCKAR	q2	q2	342	14	65934451	65936325	-1	3	81.3%	51.6%	1020	0.55 / 0.56 = 0.98	between_species_paralog: CCKBR	2

region 16 (region 3 for Hsap)

syntenyRegion: Homo_sapiens.glob04.10.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 10 -i 93294595:99423486 -f 46e5 some_geneID_to_be_selected
scoreRatio_sum=2 log_scoreRatio_sum=0 focal_scoreRatio_sum=0.42
AlnScore=978 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Homo_sapiens

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000314501	GBA3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000282947	643751	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	q1	/+	ENSP00000371548	LGI2	q1	q1	506	10	95542491	95547544	1	3	70.1%	57.8%	1179	0.48 / 0.48 = 1	within_species_paralog: LGI1	2
p8	---	gapq	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q2	+/+	ENSP00000264864	PI4K2B	q2	q2	490.5	10	99390787	99423486	1	6	66.7%	68.3%	990	0.48 / 0.48 = 1	within_species_paralog: NP_060895.1	2
p10	---	gape	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295589	CCKAR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 17 (region 6 for Mmul)

syntenyRegion: Macaca_mulatta.glob02.5.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 5 -i 10601915:17563975 -f 52e5 some_geneID_to_be_selected
scoreRatio_sum=26 log_scoreRatio_sum=3.26 focal_scoreRatio_sum=8.67
AlnScore=975 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Macaca_mulatta

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
---	q1	gaps	-	-	-	q1	-	-	-	-	-	-	-	-	-	-	-	-
p1	---	gapq	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q2	+/+	ENSP00000314501	GBA3	q2	q2	907.4	5	17483382	17563975	1	4	95.8%	97.5%	1314	0.52 / 0.02 = 26	ortholog_one2one: GBA3	1
p2	q2	+/+	ENSP00000282947	643751	q1	q2	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p3	---	gape	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000371548	LGI2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295589	CCKAR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 18 (region 3 for Cfam)

syntenyRegion: Canis_familiaris.glob06.30.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 30 -i 30747419:37604380 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=1.71 log_scoreRatio_sum=0.54 focal_scoreRatio_sum=0.57
AlnScore=927 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Canis_familiaris

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
---	q1	gaps	-	-	-	q1	-	-	-	-	-	-	-	-	-	-	-	-
p1	---	gapq	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q2	+/+	ENSP00000314501	GBA3	q1	q2	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p2	q2	+/+	ENSP00000282947	643751	q2	q2	342	30	36105559	36106131	-1	1	100%	92.1%	573	0.12 / 0.07 = 1.71	noComparaHits: ENSCAFG00000017518	2
p3	---	gape	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000371548	LGI2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295589	CCKAR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 19 (region 4 for Hsap)

syntenyRegion: Homo_sapiens.glob10.8.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 8 -i 144148702:145721100 -f 12e5 some_geneID_to_be_selected
scoreRatio_sum=1 log_scoreRatio_sum=0 focal_scoreRatio_sum=0.33
AlnScore=872 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Homo_sapiens

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000314501	GBA3	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p2	q1	+/+	ENSP00000282947	643751	q1	q1	321	8	144148702	144149274	1	1	100%	86.4%	573	0.12 / 0.12 = 1	noComparaHits:	2
p3	---	gape	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000371548	LGI2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295589	CCKAR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 20 (region 3 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob09.contig_8251.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_8251 -i 350:3359 -f 23e2 some_geneID_to_be_selected
scoreRatio_sum=3.19 log_scoreRatio_sum=1.16 focal_scoreRatio_sum=0.25
AlnScore=831 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000314501	GBA3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000282947	643751	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000371548	LGI2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gaps	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	q1	+/+	ENSP00000345206	RBPSUH	q1	q1	815.6	contig_8251	350	3359	1	7	86%	76.9%	1554	0.51 / 0.16 = 3.19	noComparaHits: ENSGACG00000015888	1
p17	---	gape	ENSP00000295589	CCKAR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 21 (region 7 for Mmul)

syntenyRegion: Macaca_mulatta.glob10.6.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 6 -i 169496856:173925446 -f 33e5 some_geneID_to_be_selected
scoreRatio_sum=1.21 log_scoreRatio_sum=-1.48 focal_scoreRatio_sum=0.17
AlnScore=824 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Macaca_mulatta

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000314501	GBA3	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p2	q1	+/+	ENSP00000282947	643751	q1	q1	170	6	169496856	169497302	-1	1	80.6%	66%	447	0.12 / 0.53 = 0.23	noComparaHits:	noData
p3	---	gapq	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gapq	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gapq	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000371548	LGI2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gapq	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	q2	+/+	ENSP00000371483	SLC34A2	q2	q2	508.6	6	173915172	173925446	1	4	60.3%	54%	1584	0.6 / 0.61 = 0.98	between_species_paralog: SLC34A1	2
p14	---	gape	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295589	CCKAR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 22 (region 5 for Hsap)

syntenyRegion: Homo_sapiens.glob07.5.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 5 -i 172445326:176757770 -f 32e5 some_geneID_to_be_selected
scoreRatio_sum=1.21 log_scoreRatio_sum=-1.55 focal_scoreRatio_sum=0.17
AlnScore=807 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Homo_sapiens

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000314501	GBA3	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p2	q1	+/+	ENSP00000282947	643751	q1	q1	159	5	172445326	172445679	-1	1	63.9%	73.8%	354	0.12 / 0.56 = 0.21	noComparaHits: NP_705835.1	noData
p3	---	gapq	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gapq	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gapq	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000371548	LGI2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gapq	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	q2	+/+	ENSP00000371483	SLC34A2	q2	q2	524.1	5	176747368	176757770	1	5	56.4%	58.9%	1395	0.6 / 0.6 = 1	within_species_paralog: SLC34A1	2
p14	---	gape	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295589	CCKAR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 23 (region 8 for Mmul)

syntenyRegion: Macaca_mulatta.glob05.9.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 9 -i 91040436:97259391 -f 47e5 some_geneID_to_be_selected
scoreRatio_sum=1.73 log_scoreRatio_sum=-0.3 focal_scoreRatio_sum=0.37
AlnScore=796 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Macaca_mulatta

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000314501	GBA3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000282947	643751	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	q1	/+	ENSP00000371548	LGI2	q1	q1	502.8	9	93248727	93253440	1	3	70.1%	57.8%	1179	0.48 / 0.48 = 1	between_species_paralog: LGI1	2
p8	---	gapq	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q2	+/+	ENSP00000264864	PI4K2B	q2	q2	320.8	9	97224848	97259391	1	4	47.4%	66.1%	687	0.48 / 0.66 = 0.73	noComparaHits: ENSMMUG00000030509 ; ENSMMUG00000017997	2
p10	---	gape	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295589	CCKAR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 24 (region 4 for Cfam)

syntenyRegion: Canis_familiaris.glob10.24.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 24 -i 35594021:38209292 -f 20e5 some_geneID_to_be_selected
scoreRatio_sum=1.08 log_scoreRatio_sum=-1.59 focal_scoreRatio_sum=0.14
AlnScore=771 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Canis_familiaris

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	/+	ENSP00000314501	GBA3	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p2	q1	/+	ENSP00000282947	643751	q1	q1	184	24	38208762	38209292	-1	1	97.9%	48.1%	531	0.12 / 0.5 = 0.24	noComparaHits: 485916	noData
p3	---	gapq	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gapq	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gapq	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000371548	LGI2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gapq	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	q2	/+	ENSP00000345206	RBPSUH	q2	q2	378.2	24	35594021	35598480	1	5	58%	53%	1002	0.51 / 0.61 = 0.84	between_species_paralog: 485892	2
p17	---	gape	ENSP00000295589	CCKAR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 25 (region 5 for Cfam)

syntenyRegion: Canis_familiaris.glob05.4.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 4 -i 35676790:40745287 -f 38e5 some_geneID_to_be_selected
scoreRatio_sum=1.26 log_scoreRatio_sum=-1.43 focal_scoreRatio_sum=0.18
AlnScore=759 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Canis_familiaris

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	/+	ENSP00000314501	GBA3	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p2	q1	/+	ENSP00000282947	643751	q1	q1	171	4	36131427	36131870	1	1	77.5%	53.4%	444	0.12 / 0.53 = 0.23	noComparaHits:	noData
---	q2	gapp	-	-	-	q2	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gapq	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gapq	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gapq	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000371548	LGI2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gapq	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	q3	/+	ENSP00000371483	SLC34A2	q3	q3	548	4	39153215	39161818	-1	6	56.7%	63%	1338	0.6 / 0.58 = 1.03	between_species_paralog: 479275	2
p14	---	gape	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295589	CCKAR	q2	---	-	-	-	-	-	-	-	-	-	-	-	-

region 26 (region 6 for Hsap)

syntenyRegion: Homo_sapiens.glob05.4.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 4 -i 39085205:46421173 -f 55e5 some_geneID_to_be_selected
scoreRatio_sum=0.4 log_scoreRatio_sum=-0.91 focal_scoreRatio_sum=0.13
AlnScore=693 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Homo_sapiens

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
---	q1	gaps	-	-	-	q1	-	-	-	-	-	-	-	-	-	-	-	-
---	q2	gaps	-	-	-	q2	-	-	-	-	-	-	-	-	-	-	-	-
p1	---	gapq	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q3	+/+	ENSP00000314501	GBA3	q1	q3	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p2	q3	+/+	ENSP00000282947	643751	q3	q3	256	4	46420607	46421173	-1	1	98.4%	66.7%	567	0.12 / 0.3 = 0.4	within_species_paralog: ENSG00000172895	4
p3	---	gape	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000371548	LGI2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295589	CCKAR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 27 (region 6 for Cfam)

syntenyRegion: Canis_familiaris.glob09.16.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 16 -i 43859134:49953670 -f 46e5 some_geneID_to_be_selected
scoreRatio_sum=0.38 log_scoreRatio_sum=-0.96 focal_scoreRatio_sum=0.13
AlnScore=672 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Canis_familiaris

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000314501	GBA3	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p2	q1	+/+	ENSP00000282947	643751	q1	q1	247.6	16	43859134	43859680	-1	2	75.9%	87.6%	435	0.12 / 0.32 = 0.38	noComparaHits: PDGFRL	5
p3	---	gape	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000371548	LGI2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295589	CCKAR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 28 (region 5 for Ggal)

syntenyRegion: Gallus_gallus.glob07.4.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 4 -i 2233591:9987293 -f 58e5 some_geneID_to_be_selected
scoreRatio_sum=0.38 log_scoreRatio_sum=-0.96 focal_scoreRatio_sum=0.13
AlnScore=671 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Gallus_gallus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000314501	GBA3	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p2	q1	+/+	ENSP00000282947	643751	q1	q1	247	4	2233591	2234163	-1	1	100%	60.2%	573	0.12 / 0.32 = 0.38	between_species_paralog: Q5ZMG8_CHICK	1
p3	---	gape	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000371548	LGI2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295589	CCKAR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 29 (region 7 for Hsap)

syntenyRegion: Homo_sapiens.glob02.2.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 2 -i 130686979:136589838 -f 44e5 some_geneID_to_be_selected
scoreRatio_sum=0.36 log_scoreRatio_sum=-1.01 focal_scoreRatio_sum=0.12
AlnScore=656 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Homo_sapiens

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
---	q1	gaps	-	-	-	q1	-	-	-	-	-	-	-	-	-	-	-	-
p1	---	gapq	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q2	+/+	ENSP00000314501	GBA3	q1	q2	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p2	q2	+/+	ENSP00000282947	643751	q2	q2	246	2	131935069	131935596	1	1	92.1%	66.5%	528	0.12 / 0.33 = 0.36	within_species_paralog: ENSG00000173284	6
---	q3	gapp	-	-	-	q3	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gape	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000371548	LGI2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295589	CCKAR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 30 (region 6 for Ggal)

syntenyRegion: Gallus_gallus.glob04.6.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 6 -i 18936079:21397686 -f 18e5 some_geneID_to_be_selected
scoreRatio_sum=1.14 log_scoreRatio_sum=0.13 focal_scoreRatio_sum=0.28
AlnScore=571 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Gallus_gallus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000314501	GBA3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000282947	643751	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	q1	+/+	ENSP00000371548	LGI2	q1	q1	561	6	21390609	21397686	-1	4	78.9%	54.9%	1425	0.48 / 0.42 = 1.14	between_species_paralog: Q1EGJ8_CHICK	2
p8	---	gape	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295589	CCKAR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 31 (region 4 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob05.contig_7157.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_7157 -i 100785:103442 -f 20e2 some_geneID_to_be_selected
scoreRatio_sum=1.08 log_scoreRatio_sum=0.08 focal_scoreRatio_sum=0.36
AlnScore=512 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000314501	GBA3	q1	q1	476.3	contig_7157	100785	103442	1	3	95.8%	49.7%	1419	0.52 / 0.48 = 1.08	noComparaHits: ENSGACG00000019544	1
p2	q1	+/+	ENSP00000282947	643751	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p3	---	gape	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000371548	LGI2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295589	CCKAR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 32 (region 7 for Ggal)

syntenyRegion: Gallus_gallus.glob05.7.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 7 -i 27095570:32378153 -f 40e5 some_geneID_to_be_selected
scoreRatio_sum=1.02 log_scoreRatio_sum=0.02 focal_scoreRatio_sum=0.34
AlnScore=487 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Gallus_gallus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000314501	GBA3	q1	q1	452.5	7	32267666	32269340	-1	2	99.1%	47.9%	1374	0.52 / 0.51 = 1.02	between_species_paralog: P70072_CHICK	1
p2	q1	+/+	ENSP00000282947	643751	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p3	---	gape	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000371548	LGI2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295589	CCKAR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 33 (region 5 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob08.contig_1837.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_1837 -i 3054:4810 -f 13e2 some_geneID_to_be_selected
scoreRatio_sum=0.92 log_scoreRatio_sum=-0.07 focal_scoreRatio_sum=0.23
AlnScore=476 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000314501	GBA3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000282947	643751	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	q1	+/+	ENSP00000371548	LGI2	q1	q1	468.1	contig_1837	3054	4810	1	4	74.5%	46.6%	1338	0.48 / 0.52 = 0.92	noComparaHits: ENSGACG00000012399	4
p8	---	gape	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295589	CCKAR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 34 (region 6 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob06.contig_5107.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_5107 -i 2906:4322 -f 11e2 some_geneID_to_be_selected
scoreRatio_sum=0.92 log_scoreRatio_sum=-0.07 focal_scoreRatio_sum=0.23
AlnScore=472 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000314501	GBA3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000282947	643751	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	q1	+/+	ENSP00000371548	LGI2	q1	q1	464	contig_5107	2906	4322	1	2	70.1%	50%	1302	0.48 / 0.52 = 0.92	noComparaHits: ENSGACG00000008101	5
p8	---	gape	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295589	CCKAR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 35 (region 7 for Cfam)

syntenyRegion: Canis_familiaris.glob07.25.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 25 -i 33684082:38093740 -f 33e5 some_geneID_to_be_selected
scoreRatio_sum=0.91 log_scoreRatio_sum=-0.08 focal_scoreRatio_sum=0.23
AlnScore=467 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Canis_familiaris

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000314501	GBA3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000282947	643751	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	q1	+/+	ENSP00000371548	LGI2	q1	q1	458.6	25	38090017	38093740	1	3	70.1%	50.1%	1155	0.48 / 0.53 = 0.91	between_species_paralog: 486128	3
p8	---	gape	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295589	CCKAR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 36 (region 8 for Hsap)

syntenyRegion: Homo_sapiens.glob06.8.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 8 -i 22061624:26778364 -f 35e5 some_geneID_to_be_selected
scoreRatio_sum=0.91 log_scoreRatio_sum=-0.08 focal_scoreRatio_sum=0.23
AlnScore=466 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Homo_sapiens

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000314501	GBA3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000282947	643751	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	q1	+/+	ENSP00000371548	LGI2	q1	q1	458.4	8	22061624	22065457	-1	3	70.1%	50.5%	1152	0.48 / 0.53 = 0.91	within_species_paralog: LGI3	3
p8	---	gape	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295589	CCKAR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 37 (region 9 for Mmul)

syntenyRegion: Macaca_mulatta.glob08.8.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 8 -i 22071483:27018409 -f 37e5 some_geneID_to_be_selected
scoreRatio_sum=0.91 log_scoreRatio_sum=-0.08 focal_scoreRatio_sum=0.23
AlnScore=465 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Macaca_mulatta

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000314501	GBA3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000282947	643751	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	q1	+/+	ENSP00000371548	LGI2	q1	q1	457.4	8	22071483	22075505	-1	3	70.1%	50.5%	1152	0.48 / 0.53 = 0.91	between_species_paralog: LGI3	3
p8	---	gape	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295589	CCKAR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 38 (region 9 for Hsap)

syntenyRegion: Homo_sapiens.glob03.9.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 9 -i 37626805:44413360 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=1 log_scoreRatio_sum=0 focal_scoreRatio_sum=0.08
AlnScore=461 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Homo_sapiens

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000314501	GBA3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000282947	643751	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000371548	LGI2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gaps	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q1	gapp	-	-	-	q1	-	-	-	-	-	-	-	-	-	-	-	-
---	q2	gapp	-	-	-	q2	-	-	-	-	-	-	-	-	-	-	-	-
p16	q3	+/+	ENSP00000345206	RBPSUH	q3	q3	472	9	41874816	41875615	-1	2	53.2%	85.3%	798	0.51 / 0.51 = 1	noComparaHits:	3
p17	---	gape	ENSP00000295589	CCKAR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 39 (region 8 for Cfam)

syntenyRegion: Canis_familiaris.glob04.19.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 19 -i 38405151:41894732 -f 26e5 some_geneID_to_be_selected
scoreRatio_sum=0.96 log_scoreRatio_sum=-0.03 focal_scoreRatio_sum=0.32
AlnScore=453 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Canis_familiaris

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000314501	GBA3	q1	q1	421.2	19	41610174	41612333	-1	2	99.3%	45.6%	1365	0.52 / 0.54 = 0.96	between_species_paralog: 483898	2
p2	q1	+/+	ENSP00000282947	643751	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p3	---	gape	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000371548	LGI2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295589	CCKAR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 40 (region 7 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob10.contig_5895.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_5895 -i 57274:85232 -f 21e3 some_geneID_to_be_selected
scoreRatio_sum=1.52 log_scoreRatio_sum=-0.56 focal_scoreRatio_sum=0.13
AlnScore=448 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000314501	GBA3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000282947	643751	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000371548	LGI2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	q1	+/+	ENSP00000371483	SLC34A2	q1	q1	421.5	contig_5895	57274	61900	1	5	46.4%	60.6%	1044	0.6 / 0.68 = 0.88	noComparaHits: ENSGACG00000018036	2
p14	---	gapq	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gapq	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	q2	+/+	ENSP00000295589	CCKAR	q2	q2	107	contig_5895	84102	85232	-1	1	78.7%	24.9%	1131	0.55 / 0.86 = 0.64	noComparaHits: ENSGACG00000018040	noData

region 41 (region 8 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob03.contig_7645.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_7645 -i 52207:60231 -f 60e2 some_geneID_to_be_selected
scoreRatio_sum=0.93 log_scoreRatio_sum=-0.06 focal_scoreRatio_sum=0.31
AlnScore=433 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000314501	GBA3	q1	q1	403	contig_7645	56504	57943	1	1	97.8%	43.8%	1440	0.52 / 0.56 = 0.93	noComparaHits: ENSGACG00000002232	3
p2	q1	+/+	ENSP00000282947	643751	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p3	---	gape	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000371548	LGI2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295589	CCKAR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 42 (region 10 for Mmul)

syntenyRegion: Macaca_mulatta.glob06.15.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 15 -i 102458130:109856488 -f 55e5 some_geneID_to_be_selected
scoreRatio_sum=0.89 log_scoreRatio_sum=-0.11 focal_scoreRatio_sum=0.07
AlnScore=424 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Macaca_mulatta

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000314501	GBA3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000282947	643751	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000371548	LGI2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gaps	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	q1	+/+	ENSP00000345206	RBPSUH	q1	q1	416	15	109855808	109856488	-1	1	45.4%	88.5%	681	0.51 / 0.57 = 0.89	noComparaHits:	2
p17	---	gape	ENSP00000295589	CCKAR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 43 (region 9 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob07.contig_8176.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_8176 -i 2033:42935 -f 31e3 some_geneID_to_be_selected
scoreRatio_sum=0.21 log_scoreRatio_sum=-1.55 focal_scoreRatio_sum=0.07
AlnScore=415 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000314501	GBA3	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p2	q1	+/+	ENSP00000282947	643751	q1	q1	153	contig_8176	42432	42935	-1	1	91.6%	41.1%	504	0.12 / 0.58 = 0.21	noComparaHits: ENSGACG00000016192	noData
p3	---	gape	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000371548	LGI2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295589	CCKAR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 44 (region 9 for Cfam)

syntenyRegion: Canis_familiaris.glob03.3.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 3 -i 69511924:75858878 -f 48e5 some_geneID_to_be_selected
scoreRatio_sum=0.21 log_scoreRatio_sum=-1.55 focal_scoreRatio_sum=0.07
AlnScore=408 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Canis_familiaris

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000314501	GBA3	q2	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p2	q1	+/+	ENSP00000282947	643751	q1	q1	154	3	75102456	75102965	-1	1	92.7%	42.9%	510	0.12 / 0.58 = 0.21	between_species_paralog: 488833	noData
---	q2	gapp	-	-	-	q2	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gape	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000371548	LGI2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295589	CCKAR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 45 (region 10 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob04.contig_7647.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_7647 -i 12543:21188 -f 65e2 some_geneID_to_be_selected
scoreRatio_sum=0.88 log_scoreRatio_sum=-0.12 focal_scoreRatio_sum=0.29
AlnScore=403 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000314501	GBA3	q1	q1	375	contig_7647	15471	16676	-1	1	88.1%	47%	1206	0.52 / 0.59 = 0.88	noComparaHits: ENSGACG00000002240	4
p2	q1	+/+	ENSP00000282947	643751	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p3	---	gape	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000371548	LGI2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295589	CCKAR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 46 (region 8 for Ggal)

syntenyRegion: Gallus_gallus.glob10.5.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 5 -i 22313086:26440400 -f 31e5 some_geneID_to_be_selected
scoreRatio_sum=0.19 log_scoreRatio_sum=-1.65 focal_scoreRatio_sum=0.06
AlnScore=369 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Gallus_gallus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000314501	GBA3	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p2	q1	+/+	ENSP00000282947	643751	q1	q1	136	5	26436593	26436946	-1	1	61.8%	57.6%	354	0.12 / 0.63 = 0.19	between_species_paralog: 428868	7
p3	---	gape	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000371548	LGI2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295589	CCKAR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 47 (region 9 for Ggal)

syntenyRegion: Gallus_gallus.glob09.1.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 1 -i 172662378:178567365 -f 44e5 some_geneID_to_be_selected
scoreRatio_sum=0.69 log_scoreRatio_sum=-0.36 focal_scoreRatio_sum=0.23
AlnScore=248 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Gallus_gallus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000314501	GBA3	q1	q1	231	1	178530495	178567365	-1	2	55.6%	45%	771	0.52 / 0.75 = 0.69	between_species_paralog: KL	4
p2	q1	+/+	ENSP00000282947	643751	noMatch	q1	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	NoData	noData	-	noData
p3	---	gape	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000336741	DHX15	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000371548	LGI2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295589	CCKAR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 48 (region 10 for Cfam)

syntenyRegion: Canis_familiaris.glob08.20.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 20 -i 38220693:45606969 -f 55e5 some_geneID_to_be_selected
scoreRatio_sum=1.4 log_scoreRatio_sum=-0.71 focal_scoreRatio_sum=0.79
AlnScore=220 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Canis_familiaris

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000314501	GBA3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000282947	643751	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	q1	+/+	ENSP00000336741	DHX15	q1	q1	137	20	44104429	44104998	-1	1	23.6%	40.5%	570	0.67 / 0.91 = 0.74	noComparaHits: 476639	noData
p5	---	gapq	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000371548	LGI2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gapq	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gapq	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	q2	+/+	ENSP00000295589	CCKAR	q2	q2	125.2	20	45382227	45383036	-1	2	60%	31%	777	0.55 / 0.83 = 0.66	noComparaHits: CCR3_CANFA	5

region 49 (region 10 for Hsap)

syntenyRegion: Homo_sapiens.glob08.3.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 3 -i 45917444:49731884 -f 29e5 some_geneID_to_be_selected
scoreRatio_sum=0.76 log_scoreRatio_sum=-0.26 focal_scoreRatio_sum=0.76
AlnScore=118 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p4)
TargetGenome=Homo_sapiens

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000295296	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000314501	GBA3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000282947	643751	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000371556	PPARGC1A	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	q1	+/+	ENSP00000336741	DHX15	q1	q1	191.6	3	47862863	47864453	1	2	32.1%	40.3%	753	0.67 / 0.88 = 0.76	noComparaHits: DHX30	noData
p5	---	gape	ENSP00000226877	SOD3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000374264	NP_775734.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000371548	LGI2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000351857	UGTAP_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000264864	PI4K2B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000303468	ZCCHC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000371506	ANAPC4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000308272	P78389_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000371483	SLC34A2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000264868	NP_056002.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000317556	Q9BRT5_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000345206	RBPSUH	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295589	CCKAR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

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Overview on processed synteny regions for DHX15_ENSG00000109606_2e6.protein.info

Data table for reference protein loci

Parameter used for the loci-alignments