[ref-loci][top][up]

Overview on processed synteny regions for DHX15_ENSG00000109606_2e6.protein.info

p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15
RankAlnOverviewAlnScoreRatioSumlogRatioSumfocalRatioSumTargetGenomechrstartPosendPoshitsCountqueryCovmeanIdentityoriscorecompara
1region1, score=1500015000114864.41302.19Homo_sapiens4 24138648 24195114 14 95.5% 91.6% -1 1623.4 within_species_paralog: DHX15
2region2, score=1157711577114.0423.7542.11Monodelphis_domestica5 203906033 203973671 14 96.7% 92.6% 1 1562.1 apparent_ortholog_one2one: DHX15
3region3, score=1056610566140.4519.8162.97Ornithorhynchus_anatinus18 4832983 4867855 13 92.3% 88.2% -1 1519.1 between_species_paralog: ENSOANG00000022215
ortholog_one2one: DHX15
4region4, score=978978200.42Monodelphis_domestica1
5region5, score=978978200.42Homo_sapiens10
6region6, score=6926922.150.010.94Monodelphis_domestica2 77737890 77738051 1 6.8% 44.4% 1 58.2 noComparaHits: DHX9
7region7, score=5385381.51-0.60.27Homo_sapiens8
8region8, score=5275271.51-0.60.27Monodelphis_domestica1
9region9, score=5155151.59-0.520.38Homo_sapiens2
10region10, score=5095091.58-0.520.37Monodelphis_domestica4
11region11, score=4914911.62-0.470.16Monodelphis_domestica1
12region12, score=4714711.63-0.450.16Homo_sapiens5
13region13, score=4514511.7-0.411.15Monodelphis_domestica8 262203692 262205617 1 82.3% 50.2% 1 632 noComparaHits:
14region14, score=4364362.07-1.121.01Monodelphis_domestica4 377513238 377520574 3 34.3% 42.2% -1 231.4 noComparaHits: ENSMODG00000020817
15region15, score=4234232.04-1.230.28Monodelphis_domestica1
16region16, score=3903901.61-0.481.05Monodelphis_domestica2 192885197 192893822 6 53% 52.7% -1 525.1 between_species_paralog: DHX8
17region17, score=3563561.52-0.641.13Homo_sapiens17 38939909 38954460 6 55.1% 52.7% 1 526.3 within_species_paralog: DHX8
18region18, score=2862861.28-0.890.27Ornithorhynchus_anatinusUltra336
19region19, score=2542541.93-1.360.98Homo_sapiens19 52548578 52557800 3 34.8% 43.7% 1 245.5 within_species_paralog: DHX34
20region20, score=2342341.46-0.650.91Homo_sapiens17 5288279 5307740 5 41% 50.2% -1 345.4 noComparaHits: DHX33 ;
RABEP1
21region21, score=1851851.37-0.760.81Homo_sapiens3 47862863 47864453 2 32.1% 40.3% 1 191.6 noComparaHits: DHX30
22region22, score=1791791.29-0.910.9Homo_sapiens13 76458127 76459889 2 67.2% 27.1% 1 198.4 noComparaHits:
23region23, score=1381381.14-1.120.18Ornithorhynchus_anatinusUltra222
24region24, score=1361361.12-1.160.17Ornithorhynchus_anatinusUltra67
25region25, score=1301301.13-1.140.18Ornithorhynchus_anatinusContig1209
26region26, score=1281281.13-1.140.18Ornithorhynchus_anatinusUltra56
27region27, score=1121121.11-1.170.17Ornithorhynchus_anatinusX1
28region28, score=1041041.12-1.150.18Ornithorhynchus_anatinusUltra462
29region29, score=91911.3-0.860.75Ornithorhynchus_anatinusUltra505 1492794 1492937 1 6% 58.3% -1 60.1 noComparaHits: DHX36

[ref-loci][top][up]

Data table for reference protein loci

QueryProtein(s)=ENSP00000336741 (contained in p3)
QueryGenome=Homo_sapiens
ref-loci geneNameprotIDtransIDgeneIDprotNamechrstartPosendPosmeanPosorinumExonsprotLengthselfscore
p1 GBA3 ENSP00000314501 ENST00000317327 ENSG00000176201 GBA3 4 22303737 22429602 22358409 1 5 455 928.6
p2 PPARGC1A ENSP00000264867 ENST00000264867 ENSG00000109819 PPARGC1A 4 23406543 23500678 23425001 -1 13 798 1101
p3 DHX15 ENSP00000336741 ENST00000336812 ENSG00000109606 DHX15 4 24138645 24195114 24159624 -1 14 795 1623.4
p4 SOD3 ENSP00000371554 ENST00000382120 ENSG00000109610 SOD3 4 24410242 24410964 24410599 1 1 240 443
p5 NP_775734.1 ENSP00000374260 ENST00000389609 ENSG00000181982 NP_775734.1 4 24419109 24523599 24445687 -1 12 529 771.6
p6 LGI2 ENSP00000371548 ENST00000382114 ENSG00000153012 LGI2 4 24614171 24641413 24614984 -1 8 545 981.8
p7 SEPSECS ENSP00000351857 ENST00000358971 ENSG00000109618 SPCS_HUMAN 4 24734651 24771089 24762725 -1 11 501 1011.8
p8 PI4K2B ENSP00000264864 ENST00000264864 ENSG00000038210 PI4K2B 4 24844884 24887907 24867356 1 10 481 948.6
p9 ZCCHC4 ENSP00000303468 ENST00000302874 ENSG00000168228 ZCCHC4 4 24923530 24979884 24960218 1 13 513 1092.2
p10 ANAPC4 ENSP00000318775 ENST00000315368 ENSG00000053900 ANAPC4 4 24988148 25029102 25007615 1 28 808 1181.5
p11 SLC34A2 ENSP00000371483 ENST00000382051 ENSG00000157765 SLC34A2 4 25273221 25287469 25282426 1 12 690 1326
p12 NP_056002.2 ENSP00000264868 ENST00000264868 ENSG00000091490 NP_056002.2 4 25359145 25474232 25415279 -1 24 1097 2283.6
p13 Q8N5G0_HUMAN ENSP00000317556 ENST00000326140 ENSG00000180408 Q8N5G0_HUMAN 4 25524917 25539911 25525073 1 3 106 130
p14 RBPJ ENSP00000345206 ENST00000342295 ENSG00000168214 RBPJ 4 25931477 26041727 26035425 1 11 500 980.4
p15 CCKAR ENSP00000295589 ENST00000295589 ENSG00000163394 CCKAR 4 26092358 26100987 26093982 -1 5 428 779.5
total length of ref-loci (on slice) = 3797251 (38e5)

Parameter used for the loci-alignments

qLoci-Score_CutOff: 50 bits
qLoci-MaxProtOverlap: 40 aa
loci size factor: 2 (additional loci size constraint: 0 nt)
loci-grouping type: loci intervalls
max distance between non-highlighted (orange) target columns: 500000 nt
RelativeScore color index:
<=
33		<=
66		<=
100		<=
133		<=
166		<=
200		<=
233		<=
266		<=
300		<=
333		<=
366		<=
400		<=
433		<=
466		<=
500		<=
533		<=
566		<=
600		<=
633		<=
666		<=
700		<=
733		<=
766		<=
800		<=
833		<=
866		<=
900		<=
933		<=
966		<=
1000		relSc>1000
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p1, q7 p1, q8 p1, q9 p1, q10 p1, q11 p1, q12 p1, q13 p1, q14 p1, q15 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p2, q7 p2, q8 p2, q9 p2, q10 p2, q11 p2, q12 p2, q13 p2, q14 p2, q15 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p3, q7 p3, q8 p3, q9 p3, q10 p3, q11 p3, q12 p3, q13 p3, q14 p3, q15 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p4, q7 p4, q8 p4, q9 p4, q10 p4, q11 p4, q12 p4, q13 p4, q14 p4, q15 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p5, q7 p5, q8 p5, q9 p5, q10 p5, q11 p5, q12 p5, q13 p5, q14 p5, q15 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p6, q7 p6, q8 p6, q9 p6, q10 p6, q11 p6, q12 p6, q13 p6, q14 p6, q15 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p7, q7 p7, q8 p7, q9 p7, q10 p7, q11 p7, q12 p7, q13 p7, q14 p7, q15 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p8, q7 p8, q8 p8, q9 p8, q10 p8, q11 p8, q12 p8, q13 p8, q14 p8, q15 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p9, q7 p9, q8 p9, q9 p9, q10 p9, q11 p9, q12 p9, q13 p9, q14 p9, q15 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p10, q7 p10, q8 p10, q9 p10, q10 p10, q11 p10, q12 p10, q13 p10, q14 p10, q15 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p11, q6 p11, q7 p11, q8 p11, q9 p11, q10 p11, q11 p11, q12 p11, q13 p11, q14 p11, q15 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p12, q6 p12, q7 p12, q8 p12, q9 p12, q10 p12, q11 p12, q12 p12, q13 p12, q14 p12, q15 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p13, q6 p13, q7 p13, q8 p13, q9 p13, q10 p13, q11 p13, q12 p13, q13 p13, q14 p13, q15 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p14, q6 p14, q7 p14, q8 p14, q9 p14, q10 p14, q11 p14, q12 p14, q13 p14, q14 p14, q15 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p15, q6 p15, q7 p15, q8 p15, q9 p15, q10 p15, q11 p15, q12 p15, q13 p15, q14 p15, q15
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

[ref-loci][top][up]
[previous]1[next]
[previous Hsap]1[next Hsap]

region 1 (region 1 for Hsap)
region1, score=15000 region1, score=15000
syntenyRegion: Homo_sapiens.glob01.4.minQN2.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 4 -i 22346701:26100987 -f 28e5 some_geneID_to_be_selected
scoreRatio_sum=1148 log_scoreRatio_sum=64.41 focal_scoreRatio_sum=302.19
AlnScore=15000 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p3)
TargetGenome=Homo_sapiens
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000314501 GBA3 q1 q1 928.6 4 22346701 22429599 1 4 95.8% 99.8% 1314 0.52 / 0.01 = 52 within_species_paralog: GBA3 1
p2 q2 +/+ ENSP00000264867 PPARGC1A q2 q2 1101 4 23412452 23495658 -1 7 75.3% 97.5% 1824 0.88 / 0.01 = 88 within_species_paralog: PPARGC1A 1
p3 q3 +/+ ENSP00000336741 DHX15 q3 q3 1623.4 4 24138648 24195114 -1 14 95.5% 91.6% 2493 0.67 / 0.01 = 67 within_species_paralog: DHX15 1
p4 q4 +/+ ENSP00000371554 SOD3 q4 q4 443 4 24410281 24410961 1 1 94.6% 100% 681 0.79 / 0.01 = 79 noComparaHits: SOD3 1
p5 q5 +/+ ENSP00000374260 NP_775734.1 q5 q5 771.6 4 24419112 24487420 -1 7 80.2% 98.1% 1290 1 / 0.01 = 100 noComparaHits: NP_775734.1 1
p6 q6 +/+ ENSP00000371548 LGI2 q6 q6 981.8 4 24614174 24641398 -1 5 87.5% 92.4% 1542 0.48 / 0.01 = 48 within_species_paralog: LGI2 1
p7 q7 +/+ ENSP00000351857 SEPSECS q7 q7 1011.8 4 24734654 24769905 -1 9 98.2% 82.4% 1758 1 / 0.01 = 100 noComparaHits: SEPSECS 1
p8 q8 +/+ ENSP00000264864 PI4K2B q8 q8 948.6 4 24844884 24887904 1 9 95.8% 97.7% 1434 0.48 / 0.01 = 48 within_species_paralog: PI4K2B 1
p9 q9 +/+ ENSP00000303468 ZCCHC4 q9 q9 1092.2 4 24923530 24979881 1 12 96.7% 91.1% 1644 1 / 0.01 = 100 noComparaHits: ZCCHC4 1
p10 q10 +/+ ENSP00000318775 ANAPC4 q10 q10 1181.5 4 24988148 25029090 1 15 69.2% 96.7% 1743 1 / 0.01 = 100 noComparaHits: ANAPC4 1
p11 q11 +/+ ENSP00000371483 SLC34A2 q11 q11 1326 4 25273221 25287466 1 12 99.1% 92.5% 2169 0.6 / 0.01 = 60 within_species_paralog: SLC34A2 1
p12 q12 +/+ ENSP00000264868 NP_056002.2 q12 q12 2283.6 4 25359148 25458584 -1 20 96.4% 94.7% 3333 1 / 0.01 = 100 noComparaHits: NP_056002.2 1
p13 q13 +/+ ENSP00000317556 Q8N5G0_HUMAN q13 q13 130 4 25524917 25525147 1 1 72.6% 97.4% 231 1 / 0.01 = 100 noComparaHits: Q8N5G0_HUMAN 1
p14 q14 +/+ ENSP00000345206 RBPJ q14 q14 980.4 4 26016893 26041673 1 9 89.8% 97.4% 1377 0.51 / 0.01 = 51 within_species_paralog: RBPJ 1
p15 q15 +/+ ENSP00000295589 CCKAR q15 q15 779.5 4 26092373 26100987 -1 5 99.1% 93.4% 1404 0.55 / 0.01 = 55 within_species_paralog: CCKAR 1
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p1, q7 p1, q8 p1, q9 p1, q10 p1, q11 p1, q12 p1, q13 p1, q14 p1, q15 p1, q16 p1, q17 p1, q18 p1, q19 p1, q20 p1, q21 p1, q22 p1, q23 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p2, q7 p2, q8 p2, q9 p2, q10 p2, q11 p2, q12 p2, q13 p2, q14 p2, q15 p2, q16 p2, q17 p2, q18 p2, q19 p2, q20 p2, q21 p2, q22 p2, q23 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p3, q7 p3, q8 p3, q9 p3, q10 p3, q11 p3, q12 p3, q13 p3, q14 p3, q15 p3, q16 p3, q17 p3, q18 p3, q19 p3, q20 p3, q21 p3, q22 p3, q23 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p4, q7 p4, q8 p4, q9 p4, q10 p4, q11 p4, q12 p4, q13 p4, q14 p4, q15 p4, q16 p4, q17 p4, q18 p4, q19 p4, q20 p4, q21 p4, q22 p4, q23 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p5, q7 p5, q8 p5, q9 p5, q10 p5, q11 p5, q12 p5, q13 p5, q14 p5, q15 p5, q16 p5, q17 p5, q18 p5, q19 p5, q20 p5, q21 p5, q22 p5, q23 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p6, q7 p6, q8 p6, q9 p6, q10 p6, q11 p6, q12 p6, q13 p6, q14 p6, q15 p6, q16 p6, q17 p6, q18 p6, q19 p6, q20 p6, q21 p6, q22 p6, q23 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p7, q7 p7, q8 p7, q9 p7, q10 p7, q11 p7, q12 p7, q13 p7, q14 p7, q15 p7, q16 p7, q17 p7, q18 p7, q19 p7, q20 p7, q21 p7, q22 p7, q23 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p8, q7 p8, q8 p8, q9 p8, q10 p8, q11 p8, q12 p8, q13 p8, q14 p8, q15 p8, q16 p8, q17 p8, q18 p8, q19 p8, q20 p8, q21 p8, q22 p8, q23 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p9, q7 p9, q8 p9, q9 p9, q10 p9, q11 p9, q12 p9, q13 p9, q14 p9, q15 p9, q16 p9, q17 p9, q18 p9, q19 p9, q20 p9, q21 p9, q22 p9, q23 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p10, q7 p10, q8 p10, q9 p10, q10 p10, q11 p10, q12 p10, q13 p10, q14 p10, q15 p10, q16 p10, q17 p10, q18 p10, q19 p10, q20 p10, q21 p10, q22 p10, q23 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p11, q6 p11, q7 p11, q8 p11, q9 p11, q10 p11, q11 p11, q12 p11, q13 p11, q14 p11, q15 p11, q16 p11, q17 p11, q18 p11, q19 p11, q20 p11, q21 p11, q22 p11, q23 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p12, q6 p12, q7 p12, q8 p12, q9 p12, q10 p12, q11 p12, q12 p12, q13 p12, q14 p12, q15 p12, q16 p12, q17 p12, q18 p12, q19 p12, q20 p12, q21 p12, q22 p12, q23 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p13, q6 p13, q7 p13, q8 p13, q9 p13, q10 p13, q11 p13, q12 p13, q13 p13, q14 p13, q15 p13, q16 p13, q17 p13, q18 p13, q19 p13, q20 p13, q21 p13, q22 p13, q23 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p14, q6 p14, q7 p14, q8 p14, q9 p14, q10 p14, q11 p14, q12 p14, q13 p14, q14 p14, q15 p14, q16 p14, q17 p14, q18 p14, q19 p14, q20 p14, q21 p14, q22 p14, q23 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p15, q6 p15, q7 p15, q8 p15, q9 p15, q10 p15, q11 p15, q12 p15, q13 p15, q14 p15, q15 p15, q16 p15, q17 p15, q18 p15, q19 p15, q20 p15, q21 p15, q22 p15, q23
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

[ref-loci][top][up]
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[previous Mdom]1[next Mdom]

region 2 (region 1 for Mdom)
region2, score=11577 region2, score=11577
syntenyRegion: Monodelphis_domestica.glob01.5.minQN2.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Monodelphis_domestica -l 5 -i 201144487:205981301 -f 36e5 some_geneID_to_be_selected
scoreRatio_sum=114.04 log_scoreRatio_sum=23.75 focal_scoreRatio_sum=42.11
AlnScore=11577 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p3)
TargetGenome=Monodelphis_domestica
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000314501 GBA3 q1 q1 735.4 5 205879257 205981301 -1 4 95.8% 77.1% 1323 0.52 / 0.2 = 2.6 ortholog_one2one: GBA3 1
p2 q2 +/+ ENSP00000264867 PPARGC1A q2 q2 1045.1 5 204690296 204826030 1 8 79.6% 88.5% 1923 0.88 / 0.05 = 17.6 ortholog_one2one: PPARGC1A 1
p3 q3 +/+ ENSP00000336741 DHX15 q3 q3 1562.1 5 203906033 203973671 1 14 96.7% 92.6% 2391 0.67 / 0.03 = 22.33 apparent_ortholog_one2one: DHX15 1
p4 q4 +/+ ENSP00000371554 SOD3 q4 q4 267 5 203698734 203699447 -1 1 100% 52% 714 0.79 / 0.39 = 2.03 ortholog_one2one: SOD3 1
p5 q5 +/+ ENSP00000374260 NP_775734.1 q5 q5 614.5 5 203616427 203690943 1 8 82.8% 74.5% 1446 1 / 0.2 = 5 ortholog_one2one: ENSMODG00000000471 1
p6 q6 +/+ ENSP00000371548 LGI2 q6 q6 860.6 5 203428143 203472918 1 4 77.1% 96.4% 1266 0.48 / 0.12 = 4 ortholog_one2one: LGI2 1
p7 q7 +/+ ENSP00000351857 SEPSECS q7 q7 873.4 5 203204521 203290451 1 9 86.2% 84.6% 1422 1 / 0.13 = 7.69 ortholog_one2one: SEPSECS 1
p8 q8 +/+ ENSP00000264864 PI4K2B q8 q8 683.7 5 203095427 203117819 -1 7 73.2% 84.8% 1086 0.48 / 0.27 = 1.78 ortholog_one2many: ENSMODG00000000405 1
p9 q9 +/+ ENSP00000303468 ZCCHC4 q9 q9 686.8 5 202955456 203033717 -1 8 77% 75.4% 1227 1 / 0.37 = 2.7 ortholog_one2one: ZCCHC4 1
p10 q10 +/+ ENSP00000318775 ANAPC4 q10 q10 698.2 5 202910897 202951896 -1 10 56.3% 62.5% 1614 1 / 0.4 = 2.5 ortholog_one2one: ANAPC4 1
p11 q11 +/+ ENSP00000371483 SLC34A2 q11 q11 826.9 5 202644971 202663616 -1 8 87.1% 61.7% 2139 0.6 / 0.37 = 1.62 ortholog_one2many: ENSMODG00000000328 1
--- q12 gapp - - - q12 - - - - - - - - - - - -
--- q13 gapp - - - q13 - - - - - - - - - - - -
--- q14 gapp - - - q14 - - - - - - - - - - - -
--- q15 gapp - - - q15 - - - - - - - - - - - -
--- q16 gapp - - - q16 - - - - - - - - - - - -
--- q17 gapp - - - q17 - - - - - - - - - - - -
--- q18 gapp - - - q18 - - - - - - - - - - - -
--- q19 gapp - - - q19 - - - - - - - - - - - -
p12 q20 +/+ ENSP00000264868 NP_056002.2 q20 q20 1854.2 5 201848768 201945657 1 19 90.3% 79.3% 3171 1 / 0.18 = 5.56 ortholog_one2one: ENSMODG00000000154 1
p13 q21 +/+ ENSP00000317556 Q8N5G0_HUMAN q21 q21 68.9 5 201782736 201782870 -1 1 42.5% 73.3% 135 1 / 0.47 = 2.13 ortholog_one2one: ENSMODG00000000137 1
p14 q22 +/+ ENSP00000345206 RBPJ q22 q22 955.3 5 201236192 201275500 -1 8 93.4% 85.2% 1596 0.51 / 0.02 = 25.5 ortholog_one2one: RBPJ 1
p15 q23 +/+ ENSP00000295589 CCKAR q23 q23 734.7 5 201144487 201153393 1 5 99.8% 82.2% 1350 0.55 / 0.05 = 11 ortholog_one2one: CCKAR 1
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p1, q7 p1, q8 p1, q9 p1, q10 p1, q11 p1, q12 p1, q13 p1, q14 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p2, q7 p2, q8 p2, q9 p2, q10 p2, q11 p2, q12 p2, q13 p2, q14 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p3, q7 p3, q8 p3, q9 p3, q10 p3, q11 p3, q12 p3, q13 p3, q14 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p4, q7 p4, q8 p4, q9 p4, q10 p4, q11 p4, q12 p4, q13 p4, q14 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p5, q7 p5, q8 p5, q9 p5, q10 p5, q11 p5, q12 p5, q13 p5, q14 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p6, q7 p6, q8 p6, q9 p6, q10 p6, q11 p6, q12 p6, q13 p6, q14 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p7, q7 p7, q8 p7, q9 p7, q10 p7, q11 p7, q12 p7, q13 p7, q14 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p8, q7 p8, q8 p8, q9 p8, q10 p8, q11 p8, q12 p8, q13 p8, q14 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p9, q7 p9, q8 p9, q9 p9, q10 p9, q11 p9, q12 p9, q13 p9, q14 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p10, q7 p10, q8 p10, q9 p10, q10 p10, q11 p10, q12 p10, q13 p10, q14 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p11, q6 p11, q7 p11, q8 p11, q9 p11, q10 p11, q11 p11, q12 p11, q13 p11, q14 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p12, q6 p12, q7 p12, q8 p12, q9 p12, q10 p12, q11 p12, q12 p12, q13 p12, q14 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p13, q6 p13, q7 p13, q8 p13, q9 p13, q10 p13, q11 p13, q12 p13, q13 p13, q14 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p14, q6 p14, q7 p14, q8 p14, q9 p14, q10 p14, q11 p14, q12 p14, q13 p14, q14 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p15, q6 p15, q7 p15, q8 p15, q9 p15, q10 p15, q11 p15, q12 p15, q13 p15, q14
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

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[previous]3[next]
[previous Oana]1[next Oana]

region 3 (region 1 for Oana)
region3, score=10566 region3, score=10566
syntenyRegion: Ornithorhynchus_anatinus.glob01.18.minQN2.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Ornithorhynchus_anatinus -l 18 -i 3773439:5813657 -f 15e5 some_geneID_to_be_selected
scoreRatio_sum=140.45 log_scoreRatio_sum=19.81 focal_scoreRatio_sum=62.97
AlnScore=10566 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p3)
TargetGenome=Ornithorhynchus_anatinus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000314501 GBA3 q1 q1 751.2 18 3773439 3816350 1 4 95.8% 77.1% 1323 0.52 / 0.19 = 2.74 ortholog_one2one: GBA3 1
p2 q2 +/+ ENSP00000264867 PPARGC1A q2 q2 1108.9 18 4262618 4336204 -1 10 84.1% 86.9% 2055 0.88 / 0.01 = 88 ortholog_one2one: PPARGC1A 1
p3 q3 +/+ ENSP00000336741 DHX15 q3 q3 1519.1 18 4832983 4867855 -1 13 92.3% 88.2% 2403 0.67 / 0.06 = 11.17 between_species_paralog: ENSOANG00000022215
ortholog_one2one: DHX15 		1
p4 q4 +/+ ENSP00000371554 SOD3 q4 q4 257 18 4953675 4954406 1 1 100% 51.2% 732 0.79 / 0.41 = 1.93 noComparaHits: 1
p5 q5 +/+ ENSP00000374260 NP_775734.1 q5 q5 614.7 18 4961657 5004276 -1 8 84.5% 71.1% 1404 1 / 0.2 = 5 ortholog_one2one: ENSOANG00000006683 1
p6 q6 +/+ ENSP00000371548 LGI2 q6 q6 829 18 5052871 5069650 -1 4 80.7% 87.3% 1365 0.48 / 0.15 = 3.2 ortholog_one2one: LGI2 1
p7 q7 +/+ ENSP00000351857 SEPSECS q7 q7 754.4 18 5112755 5142649 -1 8 82.6% 72.7% 1440 1 / 0.25 = 4 ortholog_one2one: SEPSECS 1
p8 q8 +/+ ENSP00000264864 PI4K2B q8 q8 659.8 18 5169117 5185647 1 7 71.7% 84.3% 1068 0.48 / 0.3 = 1.6 ortholog_one2one: PI4K2B 1
p9 q9 +/+ ENSP00000303468 ZCCHC4 q9 q9 731.7 18 5194663 5224414 1 9 74.1% 77.9% 1248 1 / 0.33 = 3.03 ortholog_one2one: ZCCHC4 1
p10 q10 +/+ ENSP00000318775 ANAPC4 q10 q10 895.4 18 5237093 5270018 1 14 66% 66.9% 1902 1 / 0.24 = 4.17 ortholog_one2one: ANAPC4 1
p11 q11 +/+ ENSP00000371483 SLC34A2 q11 q11 801.5 18 5363939 5384317 1 9 83.2% 68.5% 1743 0.6 / 0.39 = 1.54 ortholog_one2one: SLC34A2 1
p12 q12 +/+ ENSP00000264868 NP_056002.2 q12 q12 1875.5 18 5401486 5470031 -1 20 90.2% 82.6% 3021 1 / 0.17 = 5.88 ortholog_one2one: ENSOANG00000006697 1
p13 --- gapq ENSP00000317556 Q8N5G0_HUMAN noMatch --- - - - - - - - - - - - -
p14 q13 +/+ ENSP00000345206 RBPJ q13 q13 905.6 18 5773036 5796385 1 8 86% 93.2% 1359 0.51 / 0.07 = 7.29 ortholog_one2one: RBPJ 1
p15 q14 +/+ ENSP00000295589 CCKAR q14 q14 299.6 18 5811551 5813657 -1 2 47% 72.3% 606 0.55 / 0.61 = 0.9 noComparaHits: 1
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

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[previous]4[next]
[previous Mdom]2[next Mdom]

region 4 (region 2 for Mdom)
region4, score=978 region4, score=978
syntenyRegion: Monodelphis_domestica.glob04.1.minQN2.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Monodelphis_domestica -l 1 -i 73532346:77517102 -f 30e5 some_geneID_to_be_selected
scoreRatio_sum=2 log_scoreRatio_sum=0 focal_scoreRatio_sum=0.42
AlnScore=978 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p3)
TargetGenome=Monodelphis_domestica
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000314501 GBA3 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000264867 PPARGC1A noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000371554 SOD3 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000374260 NP_775734.1 noMatch --- - - - - - - - - - - - -
p6 q1 /+ ENSP00000371548 LGI2 q1 q1 500.3 1 77513451 77517102 -1 3 70.1% 57.3% 1167 0.48 / 0.49 = 0.98 between_species_paralog: LGI1 2
p7 --- gapq ENSP00000351857 SEPSECS noMatch --- - - - - - - - - - - - -
p8 q2 +/+ ENSP00000264864 PI4K2B q2 q2 495.9 1 73532346 73551259 -1 6 68.4% 68.5% 1026 0.48 / 0.47 = 1.02 between_species_paralog: PI4K2A 3
p9 --- gape ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000318775 ANAPC4 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000264868 NP_056002.2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000317556 Q8N5G0_HUMAN noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000345206 RBPJ noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000295589 CCKAR noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

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[previous]5[next]
[previous Hsap]2[next Hsap]

region 5 (region 2 for Hsap)
region5, score=978 region5, score=978
syntenyRegion: Homo_sapiens.glob02.10.minQN2.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 10 -i 95542491:99423486 -f 29e5 some_geneID_to_be_selected
scoreRatio_sum=2 log_scoreRatio_sum=0 focal_scoreRatio_sum=0.42
AlnScore=978 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p3)
TargetGenome=Homo_sapiens
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000314501 GBA3 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000264867 PPARGC1A noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000371554 SOD3 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000374260 NP_775734.1 noMatch --- - - - - - - - - - - - -
p6 q1 /+ ENSP00000371548 LGI2 q1 q1 506 10 95542491 95547544 1 3 70.1% 57.8% 1179 0.48 / 0.48 = 1 within_species_paralog: LGI1 2
p7 --- gapq ENSP00000351857 SEPSECS noMatch --- - - - - - - - - - - - -
p8 q2 +/+ ENSP00000264864 PI4K2B q2 q2 490.5 10 99390787 99423486 1 6 66.7% 68.3% 990 0.48 / 0.48 = 1 within_species_paralog: PI4K2A 2
p9 --- gape ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000318775 ANAPC4 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000264868 NP_056002.2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000317556 Q8N5G0_HUMAN noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000345206 RBPJ noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000295589 CCKAR noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

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[previous]6[next]
[previous Mdom]3[next Mdom]

region 6 (region 3 for Mdom)
region6, score=692 region6, score=692
syntenyRegion: Monodelphis_domestica.glob03.2.minQN2.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Monodelphis_domestica -l 2 -i 75934414:77738051 -f 14e5 some_geneID_to_be_selected
scoreRatio_sum=2.15 log_scoreRatio_sum=0.01 focal_scoreRatio_sum=0.94
AlnScore=692 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p3)
TargetGenome=Monodelphis_domestica
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000314501 GBA3 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000264867 PPARGC1A noMatch --- - - - - - - - - - - - -
p3 q1 +/+ ENSP00000336741 DHX15 q1 q1 58.2 2 77737890 77738051 1 1 6.8% 44.4% 162 0.67 / 0.96 = 0.7 noComparaHits: DHX9 noData
p4 --- gapq ENSP00000371554 SOD3 noMatch --- - - - - - - - - - - - -
p5 --- gapq ENSP00000374260 NP_775734.1 noMatch --- - - - - - - - - - - - -
p6 --- gapq ENSP00000371548 LGI2 noMatch --- - - - - - - - - - - - -
p7 --- gapq ENSP00000351857 SEPSECS noMatch --- - - - - - - - - - - - -
p8 q2 +/+ ENSP00000264864 PI4K2B q2 q2 631 2 75934414 75935811 -1 1 95.4% 67.3% 1398 0.48 / 0.33 = 1.45 ortholog_one2many: ENSMODG00000006635 2
p9 --- gape ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000318775 ANAPC4 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000264868 NP_056002.2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000317556 Q8N5G0_HUMAN noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000345206 RBPJ noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000295589 CCKAR noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

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[previous]7[next]
[previous Hsap]3[next Hsap]

region 7 (region 3 for Hsap)
region7, score=538 region7, score=538
syntenyRegion: Homo_sapiens.glob04.8.minQN2.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 8 -i 22061624:26778364 -f 35e5 some_geneID_to_be_selected
scoreRatio_sum=1.51 log_scoreRatio_sum=-0.6 focal_scoreRatio_sum=0.27
AlnScore=538 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p3)
TargetGenome=Homo_sapiens
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000314501 GBA3 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000264867 PPARGC1A noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000371554 SOD3 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000374260 NP_775734.1 noMatch --- - - - - - - - - - - - -
p6 q1 +/+ ENSP00000371548 LGI2 q1 q1 458.4 8 22061624 22065457 -1 3 70.1% 50.5% 1152 0.48 / 0.53 = 0.91 within_species_paralog: LGI3 3
p7 --- gapq ENSP00000351857 SEPSECS noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000318775 ANAPC4 noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000264868 NP_056002.2 noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000317556 Q8N5G0_HUMAN noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000345206 RBPJ noMatch --- - - - - - - - - - - - -
p15 q2 +/+ ENSP00000295589 CCKAR q2 q2 68.9 8 26777537 26778364 -1 1 70.6% 23.9% 828 0.55 / 0.91 = 0.6 noComparaHits: ADRA1A noData
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

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[previous]8[next]
[previous Mdom]4[next Mdom]

region 8 (region 4 for Mdom)
region8, score=527 region8, score=527
syntenyRegion: Monodelphis_domestica.glob06.1.minQN2.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Monodelphis_domestica -l 1 -i 584092955:590390262 -f 47e5 some_geneID_to_be_selected
scoreRatio_sum=1.51 log_scoreRatio_sum=-0.6 focal_scoreRatio_sum=0.27
AlnScore=527 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p3)
TargetGenome=Monodelphis_domestica
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000314501 GBA3 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000264867 PPARGC1A noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000371554 SOD3 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000374260 NP_775734.1 noMatch --- - - - - - - - - - - - -
p6 q1 +/+ ENSP00000371548 LGI2 q1 q1 459.4 1 584092955 584096653 -1 3 70.1% 50.9% 1155 0.48 / 0.53 = 0.91 between_species_paralog: LGI3 3
p7 --- gapq ENSP00000351857 SEPSECS noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000318775 ANAPC4 noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000264868 NP_056002.2 noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000317556 Q8N5G0_HUMAN noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000345206 RBPJ noMatch --- - - - - - - - - - - - -
p15 q2 /+ ENSP00000295589 CCKAR q2 q2 66.2 1 590389813 590390262 1 1 35% 27.3% 450 0.55 / 0.91 = 0.6 noComparaHits: ENSMODG00000008106 noData
p1 p1, q1 p1, q2 p1, q3 p2 p2, q1 p2, q2 p2, q3 p3 p3, q1 p3, q2 p3, q3 p4 p4, q1 p4, q2 p4, q3 p5 p5, q1 p5, q2 p5, q3 p6 p6, q1 p6, q2 p6, q3 p7 p7, q1 p7, q2 p7, q3 p8 p8, q1 p8, q2 p8, q3 p9 p9, q1 p9, q2 p9, q3 p10 p10, q1 p10, q2 p10, q3 p11 p11, q1 p11, q2 p11, q3 p12 p12, q1 p12, q2 p12, q3 p13 p13, q1 p13, q2 p13, q3 p14 p14, q1 p14, q2 p14, q3 p15 p15, q1 p15, q2 p15, q3
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

[ref-loci][top][up]
[previous]9[next]
[previous Hsap]4[next Hsap]

region 9 (region 4 for Hsap)
region9, score=515 region9, score=515
syntenyRegion: Homo_sapiens.glob03.2.minQN2.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 2 -i 132891167:136589838 -f 28e5 some_geneID_to_be_selected
scoreRatio_sum=1.59 log_scoreRatio_sum=-0.52 focal_scoreRatio_sum=0.38
AlnScore=515 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p3)
TargetGenome=Homo_sapiens
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
--- q1 gaps - - - q1 - - - - - - - - - - - -
p1 q2 +/+ ENSP00000314501 GBA3 q2 q2 440.2 2 136281282 136283680 -1 2 99.3% 46.4% 1368 0.52 / 0.52 = 1 within_species_paralog: LCT 2
p2 --- gapq ENSP00000264867 PPARGC1A noMatch --- - - - - - - - - - - - -
p3 --- gapq ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p4 --- gapq ENSP00000371554 SOD3 noMatch --- - - - - - - - - - - - -
p5 --- gapq ENSP00000374260 NP_775734.1 noMatch --- - - - - - - - - - - - -
p6 --- gapq ENSP00000371548 LGI2 noMatch --- - - - - - - - - - - - -
p7 --- gapq ENSP00000351857 SEPSECS noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000318775 ANAPC4 noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000264868 NP_056002.2 noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000317556 Q8N5G0_HUMAN noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000345206 RBPJ noMatch --- - - - - - - - - - - - -
p15 q3 +/+ ENSP00000295589 CCKAR q1 q3 52.4 2 132891167 132891625 1 1 32.7% 26.6% 459 0.55 / 0.93 = 0.59 noComparaHits: GPR39 noData
p1 p1, q1 p1, q2 p1, q3 p2 p2, q1 p2, q2 p2, q3 p3 p3, q1 p3, q2 p3, q3 p4 p4, q1 p4, q2 p4, q3 p5 p5, q1 p5, q2 p5, q3 p6 p6, q1 p6, q2 p6, q3 p7 p7, q1 p7, q2 p7, q3 p8 p8, q1 p8, q2 p8, q3 p9 p9, q1 p9, q2 p9, q3 p10 p10, q1 p10, q2 p10, q3 p11 p11, q1 p11, q2 p11, q3 p12 p12, q1 p12, q2 p12, q3 p13 p13, q1 p13, q2 p13, q3 p14 p14, q1 p14, q2 p14, q3 p15 p15, q1 p15, q2 p15, q3
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

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[previous]10[next]
[previous Mdom]5[next Mdom]

region 10 (region 5 for Mdom)
region10, score=509 region10, score=509
syntenyRegion: Monodelphis_domestica.glob05.4.minQN2.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Monodelphis_domestica -l 4 -i 129061263:133186460 -f 31e5 some_geneID_to_be_selected
scoreRatio_sum=1.58 log_scoreRatio_sum=-0.52 focal_scoreRatio_sum=0.37
AlnScore=509 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p3)
TargetGenome=Monodelphis_domestica
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
--- q1 gaps - - - q1 - - - - - - - - - - - -
p1 q2 +/+ ENSP00000314501 GBA3 q2 q2 429 4 132801629 132803773 -1 2 94.3% 49.2% 1287 0.52 / 0.53 = 0.98 between_species_paralog: LCT 2
p2 --- gapq ENSP00000264867 PPARGC1A noMatch --- - - - - - - - - - - - -
p3 --- gapq ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p4 --- gapq ENSP00000371554 SOD3 noMatch --- - - - - - - - - - - - -
p5 --- gapq ENSP00000374260 NP_775734.1 noMatch --- - - - - - - - - - - - -
p6 --- gapq ENSP00000371548 LGI2 noMatch --- - - - - - - - - - - - -
p7 --- gapq ENSP00000351857 SEPSECS noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000318775 ANAPC4 noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000264868 NP_056002.2 noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000317556 Q8N5G0_HUMAN noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000345206 RBPJ noMatch --- - - - - - - - - - - - -
p15 q3 +/+ ENSP00000295589 CCKAR q1 q3 57.8 4 129061263 129061688 1 1 32% 28% 426 0.55 / 0.92 = 0.6 noComparaHits: GPR39 noData
p1 p1, q1 p1, q2 p1, q3 p1, q4 p2 p2, q1 p2, q2 p2, q3 p2, q4 p3 p3, q1 p3, q2 p3, q3 p3, q4 p4 p4, q1 p4, q2 p4, q3 p4, q4 p5 p5, q1 p5, q2 p5, q3 p5, q4 p6 p6, q1 p6, q2 p6, q3 p6, q4 p7 p7, q1 p7, q2 p7, q3 p7, q4 p8 p8, q1 p8, q2 p8, q3 p8, q4 p9 p9, q1 p9, q2 p9, q3 p9, q4 p10 p10, q1 p10, q2 p10, q3 p10, q4 p11 p11, q1 p11, q2 p11, q3 p11, q4 p12 p12, q1 p12, q2 p12, q3 p12, q4 p13 p13, q1 p13, q2 p13, q3 p13, q4 p14 p14, q1 p14, q2 p14, q3 p14, q4 p15 p15, q1 p15, q2 p15, q3 p15, q4
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

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[previous]11[next]
[previous Mdom]6[next Mdom]

region 11 (region 6 for Mdom)
region11, score=491 region11, score=491
syntenyRegion: Monodelphis_domestica.glob10.1.minQN2.fac2.04.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Monodelphis_domestica -l 1 -i 376709433:383280824 -f 49e5 some_geneID_to_be_selected
scoreRatio_sum=1.62 log_scoreRatio_sum=-0.47 focal_scoreRatio_sum=0.16
AlnScore=491 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p3)
TargetGenome=Monodelphis_domestica
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000314501 GBA3 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000264867 PPARGC1A noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000371554 SOD3 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000374260 NP_775734.1 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000371548 LGI2 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000351857 SEPSECS noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000318775 ANAPC4 noMatch --- - - - - - - - - - - - -
p11 q1 +/+ ENSP00000371483 SLC34A2 q1 q1 521.4 1 383269916 383280824 -1 6 53.3% 69.7% 1137 0.6 / 0.6 = 1 between_species_paralog: SLC34A1 4
p12 --- gapq ENSP00000264868 NP_056002.2 noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000317556 Q8N5G0_HUMAN noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000345206 RBPJ noMatch --- - - - - - - - - - - - -
p15 q2 +/+ ENSP00000295589 CCKAR q4 q2 81.3 1 381138800 381139660 1 1 81.5% 25.7% 861 0.55 / 0.89 = 0.62 noComparaHits: HRH2 noData
--- q3 gape - - - q3 - - - - - - - - - - - -
--- q4 gape - - - q4 - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p2 p2, q1 p2, q2 p2, q3 p3 p3, q1 p3, q2 p3, q3 p4 p4, q1 p4, q2 p4, q3 p5 p5, q1 p5, q2 p5, q3 p6 p6, q1 p6, q2 p6, q3 p7 p7, q1 p7, q2 p7, q3 p8 p8, q1 p8, q2 p8, q3 p9 p9, q1 p9, q2 p9, q3 p10 p10, q1 p10, q2 p10, q3 p11 p11, q1 p11, q2 p11, q3 p12 p12, q1 p12, q2 p12, q3 p13 p13, q1 p13, q2 p13, q3 p14 p14, q1 p14, q2 p14, q3 p15 p15, q1 p15, q2 p15, q3
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

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[previous]12[next]
[previous Hsap]5[next Hsap]

region 12 (region 5 for Hsap)
region12, score=471 region12, score=471
syntenyRegion: Homo_sapiens.glob06.5.minQN2.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 5 -i 174801653:176757770 -f 15e5 some_geneID_to_be_selected
scoreRatio_sum=1.63 log_scoreRatio_sum=-0.45 focal_scoreRatio_sum=0.16
AlnScore=471 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p3)
TargetGenome=Homo_sapiens
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000314501 GBA3 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000264867 PPARGC1A noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000371554 SOD3 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000374260 NP_775734.1 noMatch --- - - - - - - - - - - - -
p6 --- gaps ENSP00000371548 LGI2 noMatch --- - - - - - - - - - - - -
p7 --- gaps ENSP00000351857 SEPSECS noMatch --- - - - - - - - - - - - -
p8 --- gaps ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p9 --- gaps ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p10 --- gaps ENSP00000318775 ANAPC4 noMatch --- - - - - - - - - - - - -
p11 q1 /+ ENSP00000371483 SLC34A2 q1 q1 524.1 5 176747368 176757770 1 5 56.4% 58.9% 1395 0.6 / 0.6 = 1 within_species_paralog: SLC34A1 2
p12 --- gapq ENSP00000264868 NP_056002.2 noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000317556 Q8N5G0_HUMAN noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000345206 RBPJ noMatch --- - - - - - - - - - - - -
p15 q2 +/+ ENSP00000295589 CCKAR q2 q2 95.5 5 175042870 175043757 1 1 84.1% 26.3% 888 0.55 / 0.87 = 0.63 noComparaHits: HRH2 noData
--- q3 gape - - - q3 - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p1, q7 p1, q8 p1, q9 p1, q10 p1, q11 p1, q12 p1, q13 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p2, q7 p2, q8 p2, q9 p2, q10 p2, q11 p2, q12 p2, q13 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p3, q7 p3, q8 p3, q9 p3, q10 p3, q11 p3, q12 p3, q13 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p4, q7 p4, q8 p4, q9 p4, q10 p4, q11 p4, q12 p4, q13 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p5, q7 p5, q8 p5, q9 p5, q10 p5, q11 p5, q12 p5, q13 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p6, q7 p6, q8 p6, q9 p6, q10 p6, q11 p6, q12 p6, q13 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p7, q7 p7, q8 p7, q9 p7, q10 p7, q11 p7, q12 p7, q13 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p8, q7 p8, q8 p8, q9 p8, q10 p8, q11 p8, q12 p8, q13 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p9, q7 p9, q8 p9, q9 p9, q10 p9, q11 p9, q12 p9, q13 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p10, q7 p10, q8 p10, q9 p10, q10 p10, q11 p10, q12 p10, q13 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p11, q6 p11, q7 p11, q8 p11, q9 p11, q10 p11, q11 p11, q12 p11, q13 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p12, q6 p12, q7 p12, q8 p12, q9 p12, q10 p12, q11 p12, q12 p12, q13 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p13, q6 p13, q7 p13, q8 p13, q9 p13, q10 p13, q11 p13, q12 p13, q13 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p14, q6 p14, q7 p14, q8 p14, q9 p14, q10 p14, q11 p14, q12 p14, q13 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p15, q6 p15, q7 p15, q8 p15, q9 p15, q10 p15, q11 p15, q12 p15, q13
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

[ref-loci][top][up]
[previous]13[next]
[previous Mdom]7[next Mdom]

region 13 (region 7 for Mdom)
region13, score=451 region13, score=451
syntenyRegion: Monodelphis_domestica.glob02.8.minQN2.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Monodelphis_domestica -l 8 -i 261945985:268689427 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=1.7 log_scoreRatio_sum=-0.41 focal_scoreRatio_sum=1.15
AlnScore=451 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p3)
TargetGenome=Monodelphis_domestica
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
--- q1 gaps - - - q1 - - - - - - - - - - - -
--- q2 gaps - - - q2 - - - - - - - - - - - -
--- q3 gaps - - - q3 - - - - - - - - - - - -
--- q4 gaps - - - q4 - - - - - - - - - - - -
--- q5 gaps - - - q5 - - - - - - - - - - - -
--- q6 gaps - - - q6 - - - - - - - - - - - -
--- q7 gaps - - - q7 - - - - - - - - - - - -
--- q8 gaps - - - q8 - - - - - - - - - - - -
p1 --- gapq ENSP00000314501 GBA3 noMatch --- - - - - - - - - - - - -
p2 --- gapq ENSP00000264867 PPARGC1A noMatch --- - - - - - - - - - - - -
p3 q9 +/+ ENSP00000336741 DHX15 q9 q9 632 8 262203692 262205617 1 1 82.3% 50.2% 1926 0.67 / 0.61 = 1.1 noComparaHits: 2
p4 --- gapq ENSP00000371554 SOD3 noMatch --- - - - - - - - - - - - -
p5 --- gapq ENSP00000374260 NP_775734.1 noMatch --- - - - - - - - - - - - -
p6 --- gapq ENSP00000371548 LGI2 noMatch --- - - - - - - - - - - - -
p7 --- gapq ENSP00000351857 SEPSECS noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000318775 ANAPC4 noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000264868 NP_056002.2 noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000317556 Q8N5G0_HUMAN noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000345206 RBPJ noMatch --- - - - - - - - - - - - -
p15 q10 +/+ ENSP00000295589 CCKAR q8 q10 68.9 8 262114797 262115174 1 1 29.9% 33.1% 378 0.55 / 0.91 = 0.6 noComparaHits: noData
--- q11 gape - - - q11 - - - - - - - - - - - -
--- q12 gape - - - q12 - - - - - - - - - - - -
--- q13 gape - - - q13 - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

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[previous]14[next]
[previous Mdom]8[next Mdom]

region 14 (region 8 for Mdom)
region14, score=436 region14, score=436
syntenyRegion: Monodelphis_domestica.glob09.4.minQN2.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Monodelphis_domestica -l 4 -i 371301748:377520574 -f 47e5 some_geneID_to_be_selected
scoreRatio_sum=2.07 log_scoreRatio_sum=-1.12 focal_scoreRatio_sum=1.01
AlnScore=436 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p3)
TargetGenome=Monodelphis_domestica
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000314501 GBA3 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000264867 PPARGC1A noMatch --- - - - - - - - - - - - -
p3 q1 /+ ENSP00000336741 DHX15 q1 q1 231.4 4 377513238 377520574 -1 3 34.3% 42.2% 804 0.67 / 0.85 = 0.79 noComparaHits: ENSMODG00000020817 9
p4 --- gapq ENSP00000371554 SOD3 noMatch --- - - - - - - - - - - - -
p5 --- gapq ENSP00000374260 NP_775734.1 noMatch --- - - - - - - - - - - - -
p6 q2 /+ ENSP00000371548 LGI2 q2 q2 276.8 4 373199570 373204125 -1 3 60.7% 39.2% 1011 0.48 / 0.71 = 0.68 noComparaHits: 4
--- q3 gapp - - - q3 - - - - - - - - - - - -
p7 --- gapq ENSP00000351857 SEPSECS noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000318775 ANAPC4 noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000264868 NP_056002.2 noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000317556 Q8N5G0_HUMAN noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000345206 RBPJ noMatch --- - - - - - - - - - - - -
p15 q4 +/+ ENSP00000295589 CCKAR q5 q4 66.6 4 371339436 371340077 1 1 47.9% 28.3% 642 0.55 / 0.91 = 0.6 noComparaHits: KIF1B noData
--- q5 gape - - - q5 - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

[ref-loci][top][up]
[previous]15[next]
[previous Mdom]9[next Mdom]

region 15 (region 9 for Mdom)
region15, score=423 region15, score=423
syntenyRegion: Monodelphis_domestica.glob07.1.minQN2.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Monodelphis_domestica -l 1 -i 466883300:472361343 -f 41e5 some_geneID_to_be_selected
scoreRatio_sum=2.04 log_scoreRatio_sum=-1.23 focal_scoreRatio_sum=0.28
AlnScore=423 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p3)
TargetGenome=Monodelphis_domestica
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000314501 GBA3 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000264867 PPARGC1A noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000371554 SOD3 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000374260 NP_775734.1 noMatch --- - - - - - - - - - - - -
p6 q1 /+ ENSP00000371548 LGI2 q3 q1 52.8 1 466883324 466883719 1 1 23.3% 27.8% 396 0.48 / 0.94 = 0.51 noComparaHits: noData
p7 --- gapq ENSP00000351857 SEPSECS noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000318775 ANAPC4 noMatch --- - - - - - - - - - - - -
p11 q2 /+ ENSP00000371483 SLC34A2 q2 q2 424.7 1 470426884 470450258 -1 5 50.3% 57.9% 1026 0.6 / 0.67 = 0.9 between_species_paralog: SLC34A3 6
--- q3 gapp - - - q3 - - - - - - - - - - - -
p12 --- gapq ENSP00000264868 NP_056002.2 noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000317556 Q8N5G0_HUMAN noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000345206 RBPJ noMatch --- - - - - - - - - - - - -
p15 q4 /+ ENSP00000295589 CCKAR q4 q4 96.7 1 472322237 472323088 1 1 79.9% 26.1% 852 0.55 / 0.87 = 0.63 noComparaHits: NPBWR2 noData
--- q5 gape - - - q5 - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p2 p2, q1 p2, q2 p2, q3 p3 p3, q1 p3, q2 p3, q3 p4 p4, q1 p4, q2 p4, q3 p5 p5, q1 p5, q2 p5, q3 p6 p6, q1 p6, q2 p6, q3 p7 p7, q1 p7, q2 p7, q3 p8 p8, q1 p8, q2 p8, q3 p9 p9, q1 p9, q2 p9, q3 p10 p10, q1 p10, q2 p10, q3 p11 p11, q1 p11, q2 p11, q3 p12 p12, q1 p12, q2 p12, q3 p13 p13, q1 p13, q2 p13, q3 p14 p14, q1 p14, q2 p14, q3 p15 p15, q1 p15, q2 p15, q3
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

[ref-loci][top][up]
[previous]16[next]
[previous Mdom]10[next Mdom]

region 16 (region 10 for Mdom)
region16, score=390 region16, score=390
syntenyRegion: Monodelphis_domestica.glob08.2.minQN2.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Monodelphis_domestica -l 2 -i 192885197:197798363 -f 37e5 some_geneID_to_be_selected
scoreRatio_sum=1.61 log_scoreRatio_sum=-0.48 focal_scoreRatio_sum=1.05
AlnScore=390 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p3)
TargetGenome=Monodelphis_domestica
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000314501 GBA3 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000264867 PPARGC1A noMatch --- - - - - - - - - - - - -
p3 q1 +/+ ENSP00000336741 DHX15 q1 q1 525.1 2 192885197 192893822 -1 6 53% 52.7% 1443 0.67 / 0.67 = 1 between_species_paralog: DHX8 3
p4 --- gapq ENSP00000371554 SOD3 noMatch --- - - - - - - - - - - - -
p5 --- gapq ENSP00000374260 NP_775734.1 noMatch --- - - - - - - - - - - - -
p6 --- gapq ENSP00000371548 LGI2 q3 --- - - - - - - - - - - - -
p7 --- gapq ENSP00000351857 SEPSECS noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000318775 ANAPC4 noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000264868 NP_056002.2 noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000317556 Q8N5G0_HUMAN noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000345206 RBPJ noMatch --- - - - - - - - - - - - -
p15 q2 /+ ENSP00000295589 CCKAR q2 q2 77.4 2 196880813 196881439 1 1 51.2% 30.3% 627 0.55 / 0.9 = 0.61 noComparaHits: CCR7 noData
--- q3 gape - - - q3 - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

[ref-loci][top][up]
[previous]17[next]
[previous Hsap]6[next Hsap]

region 17 (region 6 for Hsap)
region17, score=356 region17, score=356
syntenyRegion: Homo_sapiens.glob09.17.minQN2.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 17 -i 38939909:45901107 -f 52e5 some_geneID_to_be_selected
scoreRatio_sum=1.52 log_scoreRatio_sum=-0.64 focal_scoreRatio_sum=1.13
AlnScore=356 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p3)
TargetGenome=Homo_sapiens
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000314501 GBA3 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000264867 PPARGC1A noMatch --- - - - - - - - - - - - -
p3 q1 /+ ENSP00000336741 DHX15 q1 q1 526.3 17 38939909 38954460 1 6 55.1% 52.7% 1437 0.67 / 0.67 = 1 within_species_paralog: DHX8 2
p4 --- gapq ENSP00000371554 SOD3 noMatch --- - - - - - - - - - - - -
p5 --- gapq ENSP00000374260 NP_775734.1 noMatch --- - - - - - - - - - - - -
p6 q2 +/+ ENSP00000371548 LGI2 q2 q2 67.8 17 45900640 45901107 -1 1 26.6% 31.8% 468 0.48 / 0.93 = 0.52 noComparaHits: CHAD ;
NP_079425.3 		noData
p7 --- gape ENSP00000351857 SEPSECS noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000318775 ANAPC4 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000264868 NP_056002.2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000317556 Q8N5G0_HUMAN noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000345206 RBPJ noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000295589 CCKAR noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

[ref-loci][top][up]
[previous]18[next]
[previous Oana]2[next Oana]

region 18 (region 2 for Oana)
region18, score=286 region18, score=286
syntenyRegion: Ornithorhynchus_anatinus.glob02.Ultra336.minQN2.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Ornithorhynchus_anatinus -l Ultra336 -i 1102595:6402083 -f 40e5 some_geneID_to_be_selected
scoreRatio_sum=1.28 log_scoreRatio_sum=-0.89 focal_scoreRatio_sum=0.27
AlnScore=286 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p3)
TargetGenome=Ornithorhynchus_anatinus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 q1 +/+ ENSP00000314501 GBA3 q1 q1 212 Ultra336 1107580 1108569 1 1 77.1% 34.8% 990 0.52 / 0.77 = 0.68 between_species_paralog: KL 5
p2 --- gapq ENSP00000264867 PPARGC1A noMatch --- - - - - - - - - - - - -
p3 --- gapq ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p4 --- gapq ENSP00000371554 SOD3 noMatch --- - - - - - - - - - - - -
p5 --- gapq ENSP00000374260 NP_775734.1 noMatch --- - - - - - - - - - - - -
p6 --- gapq ENSP00000371548 LGI2 noMatch --- - - - - - - - - - - - -
p7 --- gapq ENSP00000351857 SEPSECS noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000318775 ANAPC4 noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000264868 NP_056002.2 noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000317556 Q8N5G0_HUMAN noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000345206 RBPJ noMatch --- - - - - - - - - - - - -
p15 q2 +/+ ENSP00000295589 CCKAR q4 q2 65.5 Ultra336 5620876 5621253 -1 1 29.4% 32.3% 378 0.55 / 0.91 = 0.6 noComparaHits: MLNR noData
--- q3 gape - - - q3 - - - - - - - - - - - -
--- q4 gape - - - q4 - - - - - - - - - - - -
--- q5 gape - - - q5 - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

[ref-loci][top][up]
[previous]19[next]
[previous Hsap]7[next Hsap]

region 19 (region 7 for Hsap)
region19, score=254 region19, score=254
syntenyRegion: Homo_sapiens.glob07.19.minQN2.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 19 -i 52514995:57019527 -f 34e5 some_geneID_to_be_selected
scoreRatio_sum=1.93 log_scoreRatio_sum=-1.36 focal_scoreRatio_sum=0.98
AlnScore=254 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p3)
TargetGenome=Homo_sapiens
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
--- q1 gaps - - - q1 - - - - - - - - - - - -
p1 --- gapq ENSP00000314501 GBA3 noMatch --- - - - - - - - - - - - -
p2 --- gapq ENSP00000264867 PPARGC1A noMatch --- - - - - - - - - - - - -
p3 q2 /+ ENSP00000336741 DHX15 q2 q2 245.5 19 52548578 52557800 1 3 34.8% 43.7% 858 0.67 / 0.84 = 0.8 within_species_paralog: DHX34 9
p4 --- gapq ENSP00000371554 SOD3 noMatch --- - - - - - - - - - - - -
p5 --- gapq ENSP00000374260 NP_775734.1 noMatch --- - - - - - - - - - - - -
p6 q3 +/+ ENSP00000371548 LGI2 q3 q3 79 19 55713699 55714109 -1 1 24.8% 31.4% 411 0.48 / 0.91 = 0.53 noComparaHits: LRRC4B noData
--- q4 gapp - - - q4 - - - - - - - - - - - -
p7 --- gapq ENSP00000351857 SEPSECS noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000318775 ANAPC4 noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000264868 NP_056002.2 noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000317556 Q8N5G0_HUMAN noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000345206 RBPJ noMatch --- - - - - - - - - - - - -
p15 q5 /+ ENSP00000295589 CCKAR q5 q5 62.4 19 57018901 57019527 1 1 47.2% 24.9% 627 0.55 / 0.91 = 0.6 noComparaHits: FPRL2 noData
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p1, q7 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p2, q7 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p3, q7 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p4, q7 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p5, q7 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p6, q7 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p7, q7 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p8, q7 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p9, q7 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p10, q7 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p11, q6 p11, q7 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p12, q6 p12, q7 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p13, q6 p13, q7 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p14, q6 p14, q7 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p15, q6 p15, q7
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

[ref-loci][top][up]
[previous]20[next]
[previous Hsap]8[next Hsap]

region 20 (region 8 for Hsap)
region20, score=234 region20, score=234
syntenyRegion: Homo_sapiens.glob10.17.minQN2.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 17 -i 1786900:5307740 -f 26e5 some_geneID_to_be_selected
scoreRatio_sum=1.46 log_scoreRatio_sum=-0.65 focal_scoreRatio_sum=0.91
AlnScore=234 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p3)
TargetGenome=Homo_sapiens
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000314501 GBA3 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000264867 PPARGC1A noMatch --- - - - - - - - - - - - -
p3 q1 /+ ENSP00000336741 DHX15 q1 q1 345.4 17 5288279 5307740 -1 5 41% 50.2% 981 0.67 / 0.78 = 0.86 noComparaHits: DHX33 ;
RABEP1 		7
p4 --- gapq ENSP00000371554 SOD3 noMatch --- - - - - - - - - - - - -
p5 --- gapq ENSP00000374260 NP_775734.1 noMatch --- - - - - - - - - - - - -
p6 --- gapq ENSP00000371548 LGI2 q7 --- - - - - - - - - - - - -
p7 --- gapq ENSP00000351857 SEPSECS noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000318775 ANAPC4 noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000264868 NP_056002.2 noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000317556 Q8N5G0_HUMAN noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000345206 RBPJ noMatch --- - - - - - - - - - - - -
p15 q2 /+ ENSP00000295589 CCKAR q2 q2 57 17 3247999 3248397 -1 1 30.4% 32.6% 399 0.55 / 0.92 = 0.6 noComparaHits: OR1E1 noData
--- q3 gape - - - q3 - - - - - - - - - - - -
--- q4 gape - - - q4 - - - - - - - - - - - -
--- q5 gape - - - q5 - - - - - - - - - - - -
--- q6 gape - - - q6 - - - - - - - - - - - -
--- q7 gape - - - q7 - - - - - - - - - - - -
p1 p1, q1 p1, q2 p1, q3 p1, q4 p1, q5 p1, q6 p1, q7 p1, q8 p2 p2, q1 p2, q2 p2, q3 p2, q4 p2, q5 p2, q6 p2, q7 p2, q8 p3 p3, q1 p3, q2 p3, q3 p3, q4 p3, q5 p3, q6 p3, q7 p3, q8 p4 p4, q1 p4, q2 p4, q3 p4, q4 p4, q5 p4, q6 p4, q7 p4, q8 p5 p5, q1 p5, q2 p5, q3 p5, q4 p5, q5 p5, q6 p5, q7 p5, q8 p6 p6, q1 p6, q2 p6, q3 p6, q4 p6, q5 p6, q6 p6, q7 p6, q8 p7 p7, q1 p7, q2 p7, q3 p7, q4 p7, q5 p7, q6 p7, q7 p7, q8 p8 p8, q1 p8, q2 p8, q3 p8, q4 p8, q5 p8, q6 p8, q7 p8, q8 p9 p9, q1 p9, q2 p9, q3 p9, q4 p9, q5 p9, q6 p9, q7 p9, q8 p10 p10, q1 p10, q2 p10, q3 p10, q4 p10, q5 p10, q6 p10, q7 p10, q8 p11 p11, q1 p11, q2 p11, q3 p11, q4 p11, q5 p11, q6 p11, q7 p11, q8 p12 p12, q1 p12, q2 p12, q3 p12, q4 p12, q5 p12, q6 p12, q7 p12, q8 p13 p13, q1 p13, q2 p13, q3 p13, q4 p13, q5 p13, q6 p13, q7 p13, q8 p14 p14, q1 p14, q2 p14, q3 p14, q4 p14, q5 p14, q6 p14, q7 p14, q8 p15 p15, q1 p15, q2 p15, q3 p15, q4 p15, q5 p15, q6 p15, q7 p15, q8
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

[ref-loci][top][up]
[previous]21[next]
[previous Hsap]9[next Hsap]

region 21 (region 9 for Hsap)
region21, score=185 region21, score=185
syntenyRegion: Homo_sapiens.glob05.3.minQN2.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 3 -i 45917444:49731884 -f 29e5 some_geneID_to_be_selected
scoreRatio_sum=1.37 log_scoreRatio_sum=-0.76 focal_scoreRatio_sum=0.81
AlnScore=185 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p3)
TargetGenome=Homo_sapiens
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
--- q1 gaps - - - q1 - - - - - - - - - - - -
p1 --- gapq ENSP00000314501 GBA3 noMatch --- - - - - - - - - - - - -
p2 --- gapq ENSP00000264867 PPARGC1A noMatch --- - - - - - - - - - - - -
p3 q2 +/+ ENSP00000336741 DHX15 q2 q2 191.6 3 47862863 47864453 1 2 32.1% 40.3% 753 0.67 / 0.88 = 0.76 noComparaHits: DHX30 noData
p4 --- gapq ENSP00000371554 SOD3 noMatch --- - - - - - - - - - - - -
p5 --- gapq ENSP00000374260 NP_775734.1 noMatch --- - - - - - - - - - - - -
p6 --- gapq ENSP00000371548 LGI2 q1 --- - - - - - - - - - - - -
p7 --- gapq ENSP00000351857 SEPSECS noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000318775 ANAPC4 noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000264868 NP_056002.2 noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000317556 Q8N5G0_HUMAN noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000345206 RBPJ noMatch --- - - - - - - - - - - - -
p15 q3 +/+ ENSP00000295589 CCKAR q5 q3 72.8 3 46374065 46374697 1 1 50% 27.3% 633 0.55 / 0.9 = 0.61 noComparaHits: CCR2 noData
--- q4 gape - - - q4 - - - - - - - - - - - -
--- q5 gape - - - q5 - - - - - - - - - - - -
--- q6 gape - - - q6 - - - - - - - - - - - -
--- q7 gape - - - q7 - - - - - - - - - - - -
--- q8 gape - - - q8 - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

[ref-loci][top][up]
[previous]22[next]
[previous Hsap]10[next Hsap]

region 22 (region 10 for Hsap)
region22, score=179 region22, score=179
syntenyRegion: Homo_sapiens.glob08.13.minQN2.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 13 -i 76458127:83353355 -f 52e5 some_geneID_to_be_selected
scoreRatio_sum=1.29 log_scoreRatio_sum=-0.91 focal_scoreRatio_sum=0.9
AlnScore=179 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p3)
TargetGenome=Homo_sapiens
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000314501 GBA3 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000264867 PPARGC1A noMatch --- - - - - - - - - - - - -
p3 q1 /+ ENSP00000336741 DHX15 q1 q1 198.4 13 76458127 76459889 1 2 67.2% 27.1% 1728 0.67 / 0.87 = 0.77 noComparaHits: noData
p4 --- gapq ENSP00000371554 SOD3 noMatch --- - - - - - - - - - - - -
p5 --- gapq ENSP00000374260 NP_775734.1 noMatch --- - - - - - - - - - - - -
p6 q2 +/+ ENSP00000371548 LGI2 q2 q2 73.2 13 83351943 83352434 -1 1 25.3% 30.5% 492 0.48 / 0.92 = 0.52 noComparaHits: SLITRK1 noData
p7 --- gape ENSP00000351857 SEPSECS noMatch --- - - - - - - - - - - - -
p8 --- gape ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p9 --- gape ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p10 --- gape ENSP00000318775 ANAPC4 noMatch --- - - - - - - - - - - - -
p11 --- gape ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p12 --- gape ENSP00000264868 NP_056002.2 noMatch --- - - - - - - - - - - - -
p13 --- gape ENSP00000317556 Q8N5G0_HUMAN noMatch --- - - - - - - - - - - - -
p14 --- gape ENSP00000345206 RBPJ noMatch --- - - - - - - - - - - - -
p15 --- gape ENSP00000295589 CCKAR noMatch --- - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

[ref-loci][top][up]
[previous]23[next]
[previous Oana]3[next Oana]

region 23 (region 3 for Oana)
region23, score=138 region23, score=138
syntenyRegion: Ornithorhynchus_anatinus.glob03.Ultra222.minQN2.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Ornithorhynchus_anatinus -l Ultra222 -i 6525421:6664039 -f 10e4 some_geneID_to_be_selected
scoreRatio_sum=1.14 log_scoreRatio_sum=-1.12 focal_scoreRatio_sum=0.18
AlnScore=138 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p3)
TargetGenome=Ornithorhynchus_anatinus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000314501 GBA3 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000264867 PPARGC1A noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000371554 SOD3 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000374260 NP_775734.1 noMatch --- - - - - - - - - - - - -
p6 q1 /+ ENSP00000371548 LGI2 q1 q1 67.4 Ultra222 6663632 6664039 -1 1 25.1% 32.1% 408 0.48 / 0.93 = 0.52 noComparaHits: NYX noData
p7 --- gapq ENSP00000351857 SEPSECS noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000318775 ANAPC4 noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000264868 NP_056002.2 noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000317556 Q8N5G0_HUMAN noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000345206 RBPJ noMatch --- - - - - - - - - - - - -
p15 q2 /+ ENSP00000295589 CCKAR q2 q2 80.9 Ultra222 6525421 6526110 -1 1 55.8% 26.8% 690 0.55 / 0.89 = 0.62 noComparaHits: GPR34 noData
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

[ref-loci][top][up]
[previous]24[next]
[previous Oana]4[next Oana]

region 24 (region 4 for Oana)
region24, score=136 region24, score=136
syntenyRegion: Ornithorhynchus_anatinus.glob06.Ultra67.minQN2.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Ornithorhynchus_anatinus -l Ultra67 -i 7673197:11947482 -f 32e5 some_geneID_to_be_selected
scoreRatio_sum=1.12 log_scoreRatio_sum=-1.16 focal_scoreRatio_sum=0.17
AlnScore=136 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p3)
TargetGenome=Ornithorhynchus_anatinus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000314501 GBA3 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000264867 PPARGC1A noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000371554 SOD3 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000374260 NP_775734.1 noMatch --- - - - - - - - - - - - -
p6 q1 +/+ ENSP00000371548 LGI2 q1 q1 55.1 Ultra67 7673197 7673502 -1 1 18.7% 34.3% 306 0.48 / 0.94 = 0.51 noComparaHits: TLR5 noData
p7 --- gapq ENSP00000351857 SEPSECS noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000318775 ANAPC4 noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000264868 NP_056002.2 noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000317556 Q8N5G0_HUMAN noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000345206 RBPJ noMatch --- - - - - - - - - - - - -
p15 q2 +/+ ENSP00000295589 CCKAR q2 q2 75.1 Ultra67 11947072 11947482 -1 1 32% 30.7% 411 0.55 / 0.9 = 0.61 noComparaHits: CHRM3 noData
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

[ref-loci][top][up]
[previous]25[next]
[previous Oana]5[next Oana]

region 25 (region 5 for Oana)
region25, score=130 region25, score=130
syntenyRegion: Ornithorhynchus_anatinus.glob05.Contig1209.minQN2.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Ornithorhynchus_anatinus -l Contig1209 -i 115552:234735 -f 89e3 some_geneID_to_be_selected
scoreRatio_sum=1.13 log_scoreRatio_sum=-1.14 focal_scoreRatio_sum=0.18
AlnScore=130 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p3)
TargetGenome=Ornithorhynchus_anatinus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000314501 GBA3 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000264867 PPARGC1A noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000371554 SOD3 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000374260 NP_775734.1 noMatch --- - - - - - - - - - - - -
p6 q1 /+ ENSP00000371548 LGI2 q1 q1 70.1 Contig1209 234307 234735 -1 1 25.7% 28.7% 429 0.48 / 0.92 = 0.52 noComparaHits: ELFN2 noData
p7 --- gapq ENSP00000351857 SEPSECS noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000318775 ANAPC4 noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000264868 NP_056002.2 noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000317556 Q8N5G0_HUMAN noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000345206 RBPJ noMatch --- - - - - - - - - - - - -
p15 q2 /+ ENSP00000295589 CCKAR q2 q2 71.2 Contig1209 115552 116106 -1 1 44.6% 27.2% 555 0.55 / 0.9 = 0.61 noComparaHits: SSTR3 noData
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

[ref-loci][top][up]
[previous]26[next]
[previous Oana]6[next Oana]

region 26 (region 6 for Oana)
region26, score=128 region26, score=128
syntenyRegion: Ornithorhynchus_anatinus.glob04.Ultra56.minQN2.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Ornithorhynchus_anatinus -l Ultra56 -i 8700250:13933361 -f 39e5 some_geneID_to_be_selected
scoreRatio_sum=1.13 log_scoreRatio_sum=-1.14 focal_scoreRatio_sum=0.18
AlnScore=128 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p3)
TargetGenome=Ornithorhynchus_anatinus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000314501 GBA3 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000264867 PPARGC1A noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000371554 SOD3 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000374260 NP_775734.1 noMatch --- - - - - - - - - - - - -
p6 q1 /+ ENSP00000371548 LGI2 q1 q1 83.6 Ultra56 13932777 13933361 -1 1 31% 26.7% 585 0.48 / 0.91 = 0.53 noComparaHits: 7
p7 --- gapq ENSP00000351857 SEPSECS noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000318775 ANAPC4 noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000264868 NP_056002.2 noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000317556 Q8N5G0_HUMAN noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000345206 RBPJ noMatch --- - - - - - - - - - - - -
p15 q2 /+ ENSP00000295589 CCKAR q2 q2 58.9 Ultra56 8700250 8700525 -1 1 21% 31.5% 276 0.55 / 0.92 = 0.6 noComparaHits: ENSOANG00000008395 noData
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

[ref-loci][top][up]
[previous]27[next]
[previous Oana]7[next Oana]

region 27 (region 7 for Oana)
region27, score=112 region27, score=112
syntenyRegion: Ornithorhynchus_anatinus.glob09.X1.minQN2.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Ornithorhynchus_anatinus -l X1 -i 31192388:36887693 -f 43e5 some_geneID_to_be_selected
scoreRatio_sum=1.11 log_scoreRatio_sum=-1.17 focal_scoreRatio_sum=0.17
AlnScore=112 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p3)
TargetGenome=Ornithorhynchus_anatinus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000314501 GBA3 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000264867 PPARGC1A noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000371554 SOD3 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000374260 NP_775734.1 noMatch --- - - - - - - - - - - - -
p6 q1 /+ ENSP00000371548 LGI2 q1 q1 53.5 X1 36887169 36887693 -1 1 27% 25.7% 525 0.48 / 0.94 = 0.51 noComparaHits: LRTM1 noData
p7 --- gapq ENSP00000351857 SEPSECS noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000318775 ANAPC4 noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000264868 NP_056002.2 noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000317556 Q8N5G0_HUMAN noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000345206 RBPJ noMatch --- - - - - - - - - - - - -
p15 q2 +/+ ENSP00000295589 CCKAR q2 q2 61.6 X1 31192388 31192762 1 1 29.2% 27.2% 375 0.55 / 0.92 = 0.6 noComparaHits: HRH1 noData
p1 p1, q1 p1, q2 p1, q3 p1, q4 p2 p2, q1 p2, q2 p2, q3 p2, q4 p3 p3, q1 p3, q2 p3, q3 p3, q4 p4 p4, q1 p4, q2 p4, q3 p4, q4 p5 p5, q1 p5, q2 p5, q3 p5, q4 p6 p6, q1 p6, q2 p6, q3 p6, q4 p7 p7, q1 p7, q2 p7, q3 p7, q4 p8 p8, q1 p8, q2 p8, q3 p8, q4 p9 p9, q1 p9, q2 p9, q3 p9, q4 p10 p10, q1 p10, q2 p10, q3 p10, q4 p11 p11, q1 p11, q2 p11, q3 p11, q4 p12 p12, q1 p12, q2 p12, q3 p12, q4 p13 p13, q1 p13, q2 p13, q3 p13, q4 p14 p14, q1 p14, q2 p14, q3 p14, q4 p15 p15, q1 p15, q2 p15, q3 p15, q4
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

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[previous]28[next]
[previous Oana]8[next Oana]

region 28 (region 8 for Oana)
region28, score=104 region28, score=104
syntenyRegion: Ornithorhynchus_anatinus.glob08.Ultra462.minQN2.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Ornithorhynchus_anatinus -l Ultra462 -i 2214185:8673114 -f 48e5 some_geneID_to_be_selected
scoreRatio_sum=1.12 log_scoreRatio_sum=-1.15 focal_scoreRatio_sum=0.18
AlnScore=104 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p3)
TargetGenome=Ornithorhynchus_anatinus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000314501 GBA3 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000264867 PPARGC1A noMatch --- - - - - - - - - - - - -
p3 --- gaps ENSP00000336741 DHX15 noMatch --- - - - - - - - - - - - -
p4 --- gaps ENSP00000371554 SOD3 noMatch --- - - - - - - - - - - - -
p5 --- gaps ENSP00000374260 NP_775734.1 noMatch --- - - - - - - - - - - - -
p6 q1 +/+ ENSP00000371548 LGI2 q1,q2 q1 65.5 Ultra462 2214185 2214526 -1 1 19.4% 34.2% 342 0.48 / 0.93 = 0.52 noComparaHits: MXRA5 noData
--- q2 gapp - - - q2 - - - - - - - - - - - -
p7 --- gapq ENSP00000351857 SEPSECS noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000318775 ANAPC4 noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000264868 NP_056002.2 noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000317556 Q8N5G0_HUMAN noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000345206 RBPJ noMatch --- - - - - - - - - - - - -
p15 q3 /+ ENSP00000295589 CCKAR q3 q3 55.5 Ultra462 8638053 8638331 1 1 21.7% 38.7% 279 0.55 / 0.92 = 0.6 noComparaHits: GRPR noData
--- q4 gape - - - q4 - - - - - - - - - - - -
p1 p1, q1 p1, q2 p2 p2, q1 p2, q2 p3 p3, q1 p3, q2 p4 p4, q1 p4, q2 p5 p5, q1 p5, q2 p6 p6, q1 p6, q2 p7 p7, q1 p7, q2 p8 p8, q1 p8, q2 p9 p9, q1 p9, q2 p10 p10, q1 p10, q2 p11 p11, q1 p11, q2 p12 p12, q1 p12, q2 p13 p13, q1 p13, q2 p14 p14, q1 p14, q2 p15 p15, q1 p15, q2
p1 p2 p3 p4 p5 p6 p7 p8 p9 p10 p11 p12 p13 p14 p15

[ref-loci][top][up]
[previous]29[next]
[previous Oana]9[next Oana]

region 29 (region 9 for Oana)
region29, score=91 region29, score=91
syntenyRegion: Ornithorhynchus_anatinus.glob07.Ultra505.minQN2.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Ornithorhynchus_anatinus -l Ultra505 -i 678406:1492937 -f 61e4 some_geneID_to_be_selected
scoreRatio_sum=1.3 log_scoreRatio_sum=-0.86 focal_scoreRatio_sum=0.75
AlnScore=91 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000336741 (contained in p3)
TargetGenome=Ornithorhynchus_anatinus
ref-loci target-loci aln protIDgeneNameoptQloci target-loci scorechrstartPosendPosorihitsqueryCovmeanIdentityhitsLengthintra_intercomparaglobalRank
p1 --- gaps ENSP00000314501 GBA3 noMatch --- - - - - - - - - - - - -
p2 --- gaps ENSP00000264867 PPARGC1A noMatch --- - - - - - - - - - - - -
p3 q1 /+ ENSP00000336741 DHX15 q1 q1 60.1 Ultra505 1492794 1492937 -1 1 6% 58.3% 144 0.67 / 0.96 = 0.7 noComparaHits: DHX36 noData
p4 --- gapq ENSP00000371554 SOD3 noMatch --- - - - - - - - - - - - -
p5 --- gapq ENSP00000374260 NP_775734.1 noMatch --- - - - - - - - - - - - -
p6 --- gapq ENSP00000371548 LGI2 noMatch --- - - - - - - - - - - - -
p7 --- gapq ENSP00000351857 SEPSECS noMatch --- - - - - - - - - - - - -
p8 --- gapq ENSP00000264864 PI4K2B noMatch --- - - - - - - - - - - - -
p9 --- gapq ENSP00000303468 ZCCHC4 noMatch --- - - - - - - - - - - - -
p10 --- gapq ENSP00000318775 ANAPC4 noMatch --- - - - - - - - - - - - -
p11 --- gapq ENSP00000371483 SLC34A2 noMatch --- - - - - - - - - - - - -
p12 --- gapq ENSP00000264868 NP_056002.2 noMatch --- - - - - - - - - - - - -
p13 --- gapq ENSP00000317556 Q8N5G0_HUMAN noMatch --- - - - - - - - - - - - -
p14 --- gapq ENSP00000345206 RBPJ noMatch --- - - - - - - - - - - - -
p15 q2 +/+ ENSP00000295589 CCKAR q2 q2 62.8 Ultra505 678406 678957 1 1 43.5% 25.3% 552 0.55 / 0.91 = 0.6 noComparaHits: P2RY1 noData