C3_GSH2_HUMAN_ENSG00000180613_2e6.protein.info Alignment Results

Data table for reference protein loci

QueryProtein(s)=ENSP00000370771 (contained in p10)
QueryGenome=Homo_sapiens

ref-loci	geneName	protID	transID	geneID	protName	chr	startPos	endPos	meanPos	ori	numExons	protLength	selfscore
p1	USP46	ENSP00000226440	ENST00000226440	ENSG00000109189	UBP46_HUMAN	4	53158563	53220041	53171529	-1	9	355	698.4
p2	NM_024534	ENSP00000355331	ENST00000295216	ENSG00000163074	NM_024534	4	53304753	53306444	53305593	-1	1	563	196.3
p3	RASL11B	ENSP00000370824	ENST00000381416	ENSG00000128045	NP_076429.1	4	53423432	53426729	53426352	1	4	248	433.7
p4	SCFD2	ENSP00000373593	ENST00000388941	ENSG00000184178	SCFD2_HUMAN	4	53434893	53926865	53874663	-1	9	684	1299.3
p5	FIP1L1	ENSP00000336752	ENST00000337488	ENSG00000145216	FIP1_HUMAN	4	53938763	54020373	53975612	1	18	594	1003.4
p6	LNX1	ENSP00000370784	ENST00000381377	ENSG00000072201	LNX1_HUMAN	4	54021831	54134926	54057199	-1	10	728	1330.2
p7	LOC441016	ENSP00000370782	ENST00000312008	ENSG00000173966	LOC441016	4	54136637	54137311	54136970	1	1	224	414.1
p8	NP_001011538.1	ENSP00000353928	ENST00000334328	ENSG00000186244	NP_001011538.1	4	54547508	54547918	54547709	-1	1	136	263.8
p9	CHIC2	ENSP00000370773	ENST00000381368	ENSG00000109220	CHIC2_HUMAN	4	54571019	54625224	54609954	-1	6	165	311.1
p10	GSH2_HUMAN	ENSP00000370771	ENST00000381366	ENSG00000180613	GSH2_HUMAN	4	54661269	54662846	54661722	1	2	304	522.6
p11	PDGFRA	ENSP00000257290	ENST00000257290	ENSG00000134853	PGFRA_HUMAN	4	54819693	54856196	54835526	1	22	1089	1946.8
p12	KIT	ENSP00000370749	ENST00000381345	ENSG00000157404	KIT_HUMAN	4	55218939	55299480	55286895	1	21	976	1842.8
p13	KDR	ENSP00000370742	ENST00000381338	ENSG00000128052	VGFR2_HUMAN	4	55640865	55686217	55663380	-1	30	1356	2607.1
p14	NP_078868.1	ENSP00000318188	ENST00000324691	ENSG00000128039	NP_078868.1	4	55907261	55931015	55925108	1	5	318	636.8
p15	TMEM165	ENSP00000370736	ENST00000381334	ENSG00000134851	TM165_HUMAN	4	55957114	55986376	55978046	1	6	324	540.3
p16	CLOCK	ENSP00000370726	ENST00000381325	ENSG00000134852	CLOCK_HUMAN	4	55996339	56043709	56011088	-1	20	846	1498.2
p17	PDCL2	ENSP00000295645	ENST00000295645	ENSG00000163440	PDCL2_HUMAN	4	56117453	56153033	56123518	-1	7	249	462.1
p18	NMU	ENSP00000370717	ENST00000381316	ENSG00000109255	NMU_HUMAN	4	56160070	56197116	56170056	-1	9	174	339.7
p19	hCG_2040572	ENSP00000370715	ENST00000381314	ENSG00000205700	hCG_2040572	4	56398008	56398274	56398137	1	1	88	173
p20	EXOC1	ENSP00000370695	ENST00000381295	ENSG00000090989	EXOC1_HUMAN	4	56419247	56465418	56449819	1	18	894	1715.4
p21	CEP135	ENSP00000257287	ENST00000257287	ENSG00000174799	CP135_HUMAN	4	56513054	56585526	56542231	1	24	1140	2011.6

total length of ref-loci (on slice) = 3426964 (34e5)

region 1

syntenyRegion: Danio_rerio.glob01.20.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 20 -i 20158523:26981491 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=13.56 log_scoreRatio_sum=3.23 focal_scoreRatio_sum=3.98
AlnScore=4756 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	q13	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	q12	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	q1	+/+	ENSP00000373593	SCFD2	q1	q1	416.1	20	20158523	20202321	-1	3	59.1%	55.1%	1191	1 / 0.67 = 1.49	ortholog_one2one: zgc:110750	(1)
p5	---	gapq	ENSP00000336752	FIP1L1	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	q2	+/+	ENSP00000370784	LNX1	q2	q2	864.6	20	20262299	20328677	-1	10	95.7%	61.6%	2190	0.48 / 0.35 = 1.37	ortholog_one2one: lnx1	1
p7	---	gapq	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q3	+/+	ENSP00000370771	GSH2_HUMAN	q10	q3	278	20	20517784	20518810	1	2	65.8%	73.9%	594	0.57 / 0.46 = 1.24	ortholog_one2many: gsh2	2
p11	q4	+/+	ENSP00000257290	PDGFRA	q10	q4	1076.9	20	20538242	20565418	1	17	90%	54.5%	2997	0.53 / 0.44 = 1.2	noComparaHits: pdgfra	2
p12	q5	+/+	ENSP00000370749	KIT	q5	q5	810.9	20	20633111	20664343	1	16	75.3%	51%	2343	0.65 / 0.55 = 1.18	noComparaHits: kita	1
p13	q6	+/+	ENSP00000370742	KDR	q6	q6	1227.2	20	20725934	20769941	-1	23	74.9%	56.4%	3219	0.58 / 0.52 = 1.12	ortholog_one2one: kdrb	1
p14	q7	+/+	ENSP00000318188	NP_078868.1	q7	q7	276.6	20	20803362	20807944	1	5	89.3%	46%	909	0.63 / 0.56 = 1.12	ortholog_one2one: srd5a2l	1
p15	q8	+/+	ENSP00000370736	TMEM165	q8	q8	357.2	20	20810790	20814789	1	4	71.9%	79.6%	708	0.95 / 0.33 = 2.88	ortholog_one2one: tmem165	1
p16	q9	+/+	ENSP00000370726	CLOCK	q9	q9	1072.9	20	20828228	20857826	-1	17	84.3%	70.4%	2376	0.55 / 0.28 = 1.96	ortholog_one2many: clock	1
p17	---	gapq	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gapq	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q10	gape	-	-	-	q10	-	-	-	-	-	-	-	-	-	-	-	-
---	q11	gape	-	-	-	q11	-	-	-	-	-	-	-	-	-	-	-	-
---	q12	gape	-	-	-	q12	-	-	-	-	-	-	-	-	-	-	-	-
---	q13	gape	-	-	-	q13	-	-	-	-	-	-	-	-	-	-	-	-

region 2

syntenyRegion: Danio_rerio.glob03.1.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 1 -i 9705364:16540496 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=4.15 log_scoreRatio_sum=0.91 focal_scoreRatio_sum=0.99
AlnScore=1880 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	q1	+/+	ENSP00000336752	FIP1L1	q1	q1	404.5	1	10127196	10144672	1	9	45.5%	67.1%	831	0.9 / 0.59 = 1.53	ortholog_one2many: zgc:103421	1
p6	---	gapq	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q2	/+	ENSP00000370773	CHIC2	q2	q2	315.9	1	10150420	10159355	1	6	100%	76.7%	612	0.01 / 0.01 = 1	ortholog_one2one: chic2	1
p10	---	gapq	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000257290	PDGFRA	q4	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000370749	KIT	q4	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000370742	KDR	q4	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	q3	/+	ENSP00000370726	CLOCK	q3	q3	985.9	1	15317226	15347569	1	17	80.3%	66.7%	2199	0.55 / 0.34 = 1.62	ortholog_one2many: clock3	2
p17	---	gapq	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gapq	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q4	gape	-	-	-	q4	-	-	-	-	-	-	-	-	-	-	-	-

region 3

syntenyRegion: Danio_rerio.glob06.14.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 14 -i 35695257:39174722 -f 26e5 some_geneID_to_be_selected
scoreRatio_sum=1.82 log_scoreRatio_sum=-2.52 focal_scoreRatio_sum=0.44
AlnScore=1595 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	q1	/+	ENSP00000370784	LNX1	q1	q1	479.1	14	37352211	37369856	1	6	61%	50.9%	1383	0.48 / 0.63 = 0.76	between_species_paralog: zgc:85925	3
p7	---	gapq	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q2	+/+	ENSP00000370773	CHIC2	q2	q2	280.4	14	37377724	37384490	-1	5	98.8%	63.4%	636	0.01 / 0.09 = 0.11	between_species_paralog: Q2YDQ7_DANRE	2
p10	---	gapq	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000257290	PDGFRA	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000370749	KIT	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	q3	+/+	ENSP00000370742	KDR	q3	q3	992.1	14	37417093	37461037	-1	22	63.4%	54.6%	2682	0.58 / 0.61 = 0.95	noComparaHits: kdr	3
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 4

syntenyRegion: Danio_rerio.glob02.24.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 24 -i 19769891:26615121 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=2.04 log_scoreRatio_sum=-1.47 focal_scoreRatio_sum=0.42
AlnScore=1478 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000226440	USP46	q1	q1	531.3	24	20188764	20199808	-1	6	94.4%	78.9%	1038	0.07 / 0.23 = 0.3	noComparaHits:	3
---	q2	gapp	-	-	-	q2	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gapq	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gapq	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gapq	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gapq	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	q3	+/+	ENSP00000370784	LNX1	q3	q3	585.9	24	20234496	20259200	-1	7	75.3%	54%	1650	0.48 / 0.55 = 0.87	between_species_paralog: lnx2	2
p7	---	gapq	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000353928	NP_001011538.1	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gapq	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000257290	PDGFRA	q4	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000370749	KIT	q4	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	q4	+/+	ENSP00000370742	KDR	q4	q4	844.8	24	20340485	20391286	-1	20	66.4%	47.1%	2802	0.58 / 0.67 = 0.87	noComparaHits: flt1	4
p14	---	gapq	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gapq	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gapq	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q5	gape	-	-	-	q5	-	-	-	-	-	-	-	-	-	-	-	-
---	q6	gape	-	-	-	q6	-	-	-	-	-	-	-	-	-	-	-	-
---	q7	gape	-	-	-	q7	-	-	-	-	-	-	-	-	-	-	-	-
---	q8	gape	-	-	-	q8	-	-	-	-	-	-	-	-	-	-	-	-

region 5

syntenyRegion: Danio_rerio.glob19.7.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 7 -i 49460010:51736510 -f 17e5 some_geneID_to_be_selected
scoreRatio_sum=1.69 log_scoreRatio_sum=-0.33 focal_scoreRatio_sum=0.19
AlnScore=1424 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000226440	USP46	q1	q1	628.9	7	50537443	50560015	-1	8	99.7%	81.1%	1212	0.07 / 0.09 = 0.78	noComparaHits:	1
p2	---	gapq	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q2	+/+	ENSP00000370824	RASL11B	q2	q2	228.3	7	50569492	50574512	1	4	85.9%	52.4%	663	0.43 / 0.47 = 0.91	between_species_paralog: zgc:110179	2
p4	---	gape	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000257290	PDGFRA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000370749	KIT	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000370742	KDR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 6

syntenyRegion: Danio_rerio.glob08.20.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 20 -i 27015328:33693642 -f 50e5 some_geneID_to_be_selected
scoreRatio_sum=8.43 log_scoreRatio_sum=2.22 focal_scoreRatio_sum=0.76
AlnScore=1246 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000257290	PDGFRA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000370749	KIT	q4	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000370742	KDR	q4	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gaps	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gaps	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gaps	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gaps	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gaps	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q1	gapp	-	-	-	q1	-	-	-	-	-	-	-	-	-	-	-	-
p20	q2	+/+	ENSP00000370695	EXOC1	q2	q2	1465.1	20	27691457	27715842	1	17	96.5%	83.2%	2763	1 / 0.14 = 7.14	ortholog_one2one: exoc1	1
p21	q3	/+	ENSP00000257287	CEP135	q3	q3	898.6	20	27834566	27856937	-1	15	85.5%	47.9%	3123	0.71 / 0.55 = 1.29	ortholog_one2one: Q5RG45_DANRE	1
---	q4	gape	-	-	-	q4	-	-	-	-	-	-	-	-	-	-	-	-

region 7

syntenyRegion: Danio_rerio.glob10.5.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 5 -i 60832994:67600533 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=2.72 log_scoreRatio_sum=-1.56 focal_scoreRatio_sum=1.47
AlnScore=507 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q1	/+	ENSP00000370771	GSH2_HUMAN	q1	q1	134.6	5	60832994	60833656	-1	1	68.1%	44.1%	663	0.57 / 0.74 = 0.77	between_species_paralog: gsh1	3
p11	q2	+/+	ENSP00000257290	PDGFRA	q3	q2	194.4	5	61336667	61351164	1	5	24.5%	35.3%	792	0.53 / 0.9 = 0.59	noComparaHits: ephb4a	noData
p12	q3	+/+	ENSP00000370749	KIT	q4	q3	197	5	63394460	63417933	1	5	23.2%	41.8%	675	0.65 / 0.89 = 0.73	noComparaHits: ddr2	noData
p13	q4	+/+	ENSP00000370742	KDR	q4	q4	186.1	5	67238410	67246094	-1	5	17.5%	40.7%	684	0.58 / 0.92 = 0.63	noComparaHits: LOC100000720	noData
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 8

syntenyRegion: Danio_rerio.glob31.21.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 21 -i 29311590:36016531 -f 50e5 some_geneID_to_be_selected
scoreRatio_sum=1.68 log_scoreRatio_sum=-0.37 focal_scoreRatio_sum=0.5
AlnScore=488 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000257290	PDGFRA	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000370749	KIT	q1	q1	626.3	21	33964082	33983894	-1	14	68%	45.9%	2040	0.65 / 0.66 = 0.98	noComparaHits: ENSDARG00000053624	3
p13	q2	/+	ENSP00000370742	KDR	q1	q2	434.5	21	29826634	29852027	-1	12	32.4%	43.7%	1446	0.58 / 0.83 = 0.7	noComparaHits: fgfr4	noData
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 9

syntenyRegion: Danio_rerio.glob30.14.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 14 -i 24338288:31084130 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=1.59 log_scoreRatio_sum=-0.46 focal_scoreRatio_sum=0.68
AlnScore=469 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	q1	+/+	ENSP00000257290	PDGFRA	q1	q1	747.2	14	25776469	25810659	1	16	70.3%	47.7%	2340	0.53 / 0.61 = 0.87	noComparaHits: pdgfrb2	3
p12	q2	/+	ENSP00000370749	KIT	q1	q2	176.2	14	30545879	30570176	-1	4	26.1%	35.2%	777	0.65 / 0.9 = 0.72	noComparaHits: LOC572503	noData
p13	---	gape	ENSP00000370742	KDR	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 10

syntenyRegion: Danio_rerio.glob07.14.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 14 -i 6279526:13064240 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=1 log_scoreRatio_sum=0 focal_scoreRatio_sum=0.25
AlnScore=410 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000257290	PDGFRA	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000370749	KIT	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	q1	+/+	ENSP00000370742	KDR	q1	q1	1069.3	14	11701198	11807647	-1	22	70.6%	50.4%	3141	0.58 / 0.58 = 1	noComparaHits: flt4	2
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 11

syntenyRegion: Danio_rerio.glob34.22.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 22 -i 8533748:15296151 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=1.37 log_scoreRatio_sum=-0.76 focal_scoreRatio_sum=0.38
AlnScore=314 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	q1	/+	ENSP00000370784	LNX1	q1	q1	277.2	22	14177023	14573193	-1	9	50.4%	35.8%	1122	0.48 / 0.79 = 0.61	noComparaHits: inadl ; LOC556075 ; si:ch211-155o21.1 ; nfia ; LOC100003398 ; LOC797542	4
p7	---	gapq	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gapq	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000257290	PDGFRA	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q2	+/+	ENSP00000370749	KIT	q2	q2	253.6	22	8533817	8578386	-1	7	33%	35.3%	1005	0.65 / 0.86 = 0.76	noComparaHits: insrb	noData
p13	---	gape	ENSP00000370742	KDR	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 12

syntenyRegion: Danio_rerio.glob05.10.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 10 -i 307776:4431722 -f 31e5 some_geneID_to_be_selected
scoreRatio_sum=1.97 log_scoreRatio_sum=-1.26 focal_scoreRatio_sum=0.71
AlnScore=304 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	q1	+/+	ENSP00000257290	PDGFRA	q1	q1	299.9	10	3100574	3166283	-1	7	35.8%	39.3%	1173	0.53 / 0.84 = 0.63	noComparaHits: musk	noData
p12	q2	+/+	ENSP00000370749	KIT	q1	q2	141.2	10	2982334	2985364	-1	3	13.5%	45.9%	396	0.65 / 0.92 = 0.71	noComparaHits: syk	noData
p13	q3	+/+	ENSP00000370742	KDR	q1	q3	194.3	10	2825762	2849393	1	3	28%	34.2%	1125	0.58 / 0.92 = 0.63	noComparaHits:	noData
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 13

syntenyRegion: Danio_rerio.glob29.Zv7_NA3207.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l Zv7_NA3207 -i 41053:84661 -f 33e3 some_geneID_to_be_selected
scoreRatio_sum=0.94 log_scoreRatio_sum=-0.05 focal_scoreRatio_sum=0.31
AlnScore=303 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000257290	PDGFRA	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000370749	KIT	q1	q1	558.7	Zv7_NA3207	41059	66922	-1	12	47.6%	54.5%	1518	0.65 / 0.69 = 0.94	noComparaHits: LOC100008185	5
p13	---	gape	ENSP00000370742	KDR	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 14

syntenyRegion: Danio_rerio.glob48.25.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 25 -i 6631109:13463853 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=1.97 log_scoreRatio_sum=-1.26 focal_scoreRatio_sum=0.7
AlnScore=299 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	q1	+/+	ENSP00000257290	PDGFRA	q1	q1	210.7	25	7373432	7411300	1	5	22.7%	42.7%	735	0.53 / 0.89 = 0.6	noComparaHits: si:dkey-18e5.1	noData
p12	q2	+/+	ENSP00000370749	KIT	q2	q2	207.4	25	9273161	9321900	1	6	26.2%	39.2%	810	0.65 / 0.88 = 0.74	noComparaHits: met	noData
p13	q3	+/+	ENSP00000370742	KDR	q2	q3	208.5	25	11610476	11639736	-1	6	18.8%	36.1%	774	0.58 / 0.92 = 0.63	noComparaHits: LOC563480	noData
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 15

syntenyRegion: Danio_rerio.glob35.1.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 1 -i 27699808:34472485 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=0.81 log_scoreRatio_sum=-2.73 focal_scoreRatio_sum=0.25
AlnScore=273 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000226440	USP46	q1	q1	145.5	1	34402715	34406180	1	4	63.9%	37.2%	669	0.07 / 0.79 = 0.09	noComparaHits:	5
p2	---	gapq	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gapq	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gapq	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gapq	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gapq	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000257290	PDGFRA	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q2	/+	ENSP00000370749	KIT	q2	q2	174.6	1	27996694	28011007	1	5	18.8%	38.8%	549	0.65 / 0.9 = 0.72	noComparaHits: LOC100005538	noData
p13	---	gape	ENSP00000370742	KDR	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 16

syntenyRegion: Danio_rerio.glob39.8.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 8 -i 46063094:48952374 -f 22e5 some_geneID_to_be_selected
scoreRatio_sum=1.38 log_scoreRatio_sum=-0.74 focal_scoreRatio_sum=0.57
AlnScore=269 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	q1	/+	ENSP00000257290	PDGFRA	q1	q1	327.8	8	46063115	46108517	-1	9	25.3%	52.1%	846	0.53 / 0.83 = 0.64	noComparaHits: fgfr1	noData
p12	q2	+/+	ENSP00000370749	KIT	q1	q2	217.6	8	48243137	48391827	1	6	27.3%	38.8%	771	0.65 / 0.88 = 0.74	noComparaHits: CACNA1E ; ENSDARG00000068034 ; LOC570636	noData
p13	---	gape	ENSP00000370742	KDR	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 17

syntenyRegion: Danio_rerio.glob12.2.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 2 -i 801138:6482396 -f 43e5 some_geneID_to_be_selected
scoreRatio_sum=1.95 log_scoreRatio_sum=-1.29 focal_scoreRatio_sum=0.7
AlnScore=253 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q1	gapp	-	-	-	q1	-	-	-	-	-	-	-	-	-	-	-	-
p11	q2	/+	ENSP00000257290	PDGFRA	q3	q2	176	2	1409533	1420885	-1	5	18.3%	46.4%	591	0.53 / 0.9 = 0.59	noComparaHits: egfr	noData
p12	q3	+/+	ENSP00000370749	KIT	q4	q3	195.8	2	3920226	3927018	1	5	24.7%	39.7%	720	0.65 / 0.89 = 0.73	noComparaHits: LOC559428	noData
p13	q4	+/+	ENSP00000370742	KDR	q4	q4	198.2	2	4686670	4768803	-1	5	20.6%	36%	837	0.58 / 0.92 = 0.63	noComparaHits: ek3 ; PCOLCE2 (2 of 2)	noData
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	q1	---	-	-	-	-	-	-	-	-	-	-	-	-

region 18

syntenyRegion: Danio_rerio.glob44.23.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 23 -i 14254254:21047677 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=1.36 log_scoreRatio_sum=-0.77 focal_scoreRatio_sum=0.55
AlnScore=235 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	q1	+/+	ENSP00000257290	PDGFRA	q1	q1	246.1	23	15139084	15183524	1	6	34%	35.1%	1125	0.53 / 0.87 = 0.61	noComparaHits: zgc:158791	noData
p12	q2	/+	ENSP00000370749	KIT	q1	q2	224.1	23	20208151	20376703	-1	6	29.9%	36.2%	975	0.65 / 0.87 = 0.75	noComparaHits: ENSDARG00000070738 ; LOC566249 ; LOC100005960	noData
p13	---	gape	ENSP00000370742	KDR	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 19

syntenyRegion: Danio_rerio.glob27.9.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 9 -i 36282684:43107228 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=0.67 log_scoreRatio_sum=-2.94 focal_scoreRatio_sum=0.3
AlnScore=233 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	/+	ENSP00000226440	USP46	q1	q1	128.6	9	43106983	43107228	-1	1	23.1%	78.3%	246	0.07 / 0.81 = 0.09	noComparaHits: egfl6	6
p2	---	gapq	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gapq	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gapq	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gapq	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gapq	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	q2	+/+	ENSP00000257290	PDGFRA	q2	q2	168.2	9	36857965	36976443	-1	5	31.6%	30.5%	1110	0.53 / 0.91 = 0.58	noComparaHits: ttna	noData
p12	---	gape	ENSP00000370749	KIT	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000370742	KDR	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 20

syntenyRegion: Danio_rerio.glob32.18.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 18 -i 12410173:18720316 -f 47e5 some_geneID_to_be_selected
scoreRatio_sum=1.39 log_scoreRatio_sum=-0.73 focal_scoreRatio_sum=0.34
AlnScore=232 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000257290	PDGFRA	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000370749	KIT	q1	q1	247.3	18	13263223	13293608	1	7	40.3%	31.8%	1206	0.65 / 0.86 = 0.76	noComparaHits: igf1ra	noData
p13	---	gapq	ENSP00000370742	KDR	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	q2	/+	ENSP00000370726	CLOCK	q2	q2	174	18	18705597	18720316	1	5	24.8%	39.3%	684	0.55 / 0.88 = 0.63	noComparaHits: arntl2	4
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 21

syntenyRegion: Danio_rerio.glob17.19.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 19 -i 9398850:15106665 -f 43e5 some_geneID_to_be_selected
scoreRatio_sum=1.47 log_scoreRatio_sum=-0.61 focal_scoreRatio_sum=0.77
AlnScore=230 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q1	+/+	ENSP00000370771	GSH2_HUMAN	q1	q1	102	19	10539137	10540084	1	2	24%	62.7%	219	0.57 / 0.8 = 0.71	noComparaHits: hoxa3a	4
p11	---	gapq	ENSP00000257290	PDGFRA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000370749	KIT	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000370742	KDR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gapq	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	q2	/+	ENSP00000257287	CEP135	q2	q2	125.1	19	13248297	13250963	-1	1	78.9%	20%	2667	0.71 / 0.93 = 0.76	noComparaHits: Q503P9_DANRE	noData

region 22

syntenyRegion: Danio_rerio.glob20.7.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 7 -i 3706937:10149675 -f 48e5 some_geneID_to_be_selected
scoreRatio_sum=1.33 log_scoreRatio_sum=-0.82 focal_scoreRatio_sum=0.54
AlnScore=222 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	q1	+/+	ENSP00000257290	PDGFRA	q1	q1	221.8	7	7739874	7759904	1	6	25.8%	39.3%	846	0.53 / 0.88 = 0.6	noComparaHits: igf1rb	noData
p12	q2	+/+	ENSP00000370749	KIT	q1	q2	201.8	7	10071591	10149648	1	6	19.5%	45%	579	0.65 / 0.89 = 0.73	noComparaHits: LOC566739 ; furina	noData
p13	---	gape	ENSP00000370742	KDR	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 23

syntenyRegion: Danio_rerio.glob46.7.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 7 -i 11125263:17651152 -f 49e5 some_geneID_to_be_selected
scoreRatio_sum=1.91 log_scoreRatio_sum=-1.36 focal_scoreRatio_sum=0.68
AlnScore=203 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	q1	/+	ENSP00000257290	PDGFRA	q1	q1	156.5	7	15792145	15820485	-1	4	17.2%	35.9%	558	0.53 / 0.91 = 0.58	noComparaHits: ENSDARG00000069493	noData
p12	q2	+/+	ENSP00000370749	KIT	q1	q2	160.1	7	17531401	17536268	1	4	19.4%	39.8%	573	0.65 / 0.91 = 0.71	noComparaHits: zgc:154019	noData
p13	q3	/+	ENSP00000370742	KDR	q1	q3	132.3	7	17648717	17651077	1	3	10.6%	43.5%	432	0.58 / 0.94 = 0.62	noComparaHits: zgc:113403 ; zgc:154019	noData
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 24

syntenyRegion: Danio_rerio.glob11.5.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 5 -i 45286179:52002663 -f 50e5 some_geneID_to_be_selected
scoreRatio_sum=1.32 log_scoreRatio_sum=-0.83 focal_scoreRatio_sum=0.54
AlnScore=200 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	q1	+/+	ENSP00000257290	PDGFRA	q1	q1	241.3	5	49177222	49218672	1	6	30.3%	39.6%	963	0.53 / 0.87 = 0.61	noComparaHits: A3KPS2_DANRE	noData
p12	q2	/+	ENSP00000370749	KIT	q1	q2	159.6	5	50766296	50779181	-1	4	15.9%	46.3%	456	0.65 / 0.91 = 0.71	noComparaHits: A2CES6_DANRE	noData
p13	---	gape	ENSP00000370742	KDR	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 25

syntenyRegion: Danio_rerio.glob22.17.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 17 -i 7572691:14128345 -f 49e5 some_geneID_to_be_selected
scoreRatio_sum=1.24 log_scoreRatio_sum=-0.95 focal_scoreRatio_sum=0.46
AlnScore=189 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	q1	+/+	ENSP00000257290	PDGFRA	q1	q1	198.1	17	13689703	13697721	-1	5	21.1%	41.9%	723	0.53 / 0.89 = 0.6	noComparaHits: ros1	noData
p12	---	gapq	ENSP00000370749	KIT	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	q2	+/+	ENSP00000370742	KDR	q2	q2	236.2	17	8445712	8522713	1	7	19%	41.7%	777	0.58 / 0.9 = 0.64	noComparaHits: dtk	noData
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 26

syntenyRegion: Danio_rerio.glob36.13.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 13 -i 8993619:10788310 -f 13e5 some_geneID_to_be_selected
scoreRatio_sum=0.65 log_scoreRatio_sum=-0.42 focal_scoreRatio_sum=0.33
AlnScore=186 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	q1	+/+	ENSP00000257290	PDGFRA	q1	q1	363.5	13	9295353	9330736	-1	10	27.3%	51.5%	972	0.53 / 0.81 = 0.65	noComparaHits: fgfr3	noData
p12	---	gape	ENSP00000370749	KIT	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000370742	KDR	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 27

syntenyRegion: Danio_rerio.glob49.8.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 8 -i 17809049:22800015 -f 37e5 some_geneID_to_be_selected
scoreRatio_sum=1.31 log_scoreRatio_sum=-0.84 focal_scoreRatio_sum=0.54
AlnScore=185 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	q1	+/+	ENSP00000257290	PDGFRA	q1	q1	217.2	8	21652342	21657597	-1	5	27.4%	39.8%	894	0.53 / 0.88 = 0.6	noComparaHits: LOC555232	noData
p12	q2	/+	ENSP00000370749	KIT	q1	q2	151.9	8	18145969	18178976	1	4	14.2%	47.6%	417	0.65 / 0.91 = 0.71	noComparaHits: zgc:110383	noData
p13	---	gape	ENSP00000370742	KDR	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 28

syntenyRegion: Danio_rerio.glob59.6.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 6 -i 27422621:34063131 -f 50e5 some_geneID_to_be_selected
scoreRatio_sum=1.32 log_scoreRatio_sum=-0.84 focal_scoreRatio_sum=0.54
AlnScore=181 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	q1	+/+	ENSP00000257290	PDGFRA	q2	q1	157.9	6	32495015	32514514	-1	4	19.6%	39.5%	636	0.53 / 0.91 = 0.58	noComparaHits: rbm19 ; rtk6	noData
p12	q2	/+	ENSP00000370749	KIT	q2	q2	206.8	6	29304378	29358821	1	6	26.1%	40.2%	786	0.65 / 0.88 = 0.74	noComparaHits: LOC100002448	noData
p13	---	gape	ENSP00000370742	KDR	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 29

syntenyRegion: Danio_rerio.glob52.2.minQN1.fac2.05.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 2 -i 32289880:34471611 -f 16e5 some_geneID_to_be_selected
scoreRatio_sum=1.31 log_scoreRatio_sum=-0.85 focal_scoreRatio_sum=0.53
AlnScore=178 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	q1	+/+	ENSP00000257290	PDGFRA	q2	q1	153.7	2	33224947	33262685	-1	4	18.4%	35%	603	0.53 / 0.92 = 0.58	noComparaHits: ENSDARG00000011600	noData
p12	q2	+/+	ENSP00000370749	KIT	q2	q2	186.1	2	32783706	32873148	-1	5	21%	41.4%	609	0.65 / 0.89 = 0.73	noComparaHits: zgc:152896 ; epha4a	noData
p13	---	gape	ENSP00000370742	KDR	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 30

syntenyRegion: Danio_rerio.glob14.15.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 15 -i 36886739:43651496 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=2.08 log_scoreRatio_sum=-1.1 focal_scoreRatio_sum=0.45
AlnScore=175 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000257290	PDGFRA	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000370749	KIT	q1	q1	157.9	15	36886739	36894853	1	4	15.9%	43.4%	465	0.65 / 0.91 = 0.71	noComparaHits: rtk4	noData
p13	q2	/+	ENSP00000370742	KDR	q1	q2	121.5	15	42831869	42832960	1	3	11.7%	39.9%	456	0.58 / 0.95 = 0.61	noComparaHits: ENSDARG00000063691	noData
p14	---	gapq	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gapq	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	q3	+/+	ENSP00000257287	CEP135	q3	q3	127.9	15	43647057	43649636	1	1	76.1%	22%	2580	0.71 / 0.93 = 0.76	noComparaHits: ENSDARG00000061928	8

region 31

syntenyRegion: Danio_rerio.glob42.10.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 10 -i 32881565:34843552 -f 15e5 some_geneID_to_be_selected
scoreRatio_sum=0.79 log_scoreRatio_sum=-0.23 focal_scoreRatio_sum=0.26
AlnScore=171 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000257290	PDGFRA	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000370749	KIT	q1	q1	316.4	10	34568656	34588546	1	8	38.6%	43%	1152	0.65 / 0.82 = 0.79	noComparaHits: A4JYF3_DANRE	noData
p13	---	gape	ENSP00000370742	KDR	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 32

syntenyRegion: Danio_rerio.glob04.6.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 6 -i 10304175:17134377 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=1.31 log_scoreRatio_sum=-0.84 focal_scoreRatio_sum=0.54
AlnScore=170 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	q1	+/+	ENSP00000257290	PDGFRA	q1	q1	195.8	6	17037457	17086796	-1	3	32.8%	31.4%	1044	0.53 / 0.89 = 0.6	noComparaHits: si:dkey-209n16.1	noData
p12	q2	/+	ENSP00000370749	KIT	q1	q2	143.5	6	16628602	16689310	1	4	18%	40.2%	555	0.65 / 0.92 = 0.71	noComparaHits: jak1 ; dre-mir-101a	noData
p13	---	gape	ENSP00000370742	KDR	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 33

syntenyRegion: Danio_rerio.glob18.19.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 19 -i 34480809:41290676 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=1.51 log_scoreRatio_sum=-0.55 focal_scoreRatio_sum=0.31
AlnScore=169 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000257290	PDGFRA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000370749	KIT	q1	q1	213.1	19	40958542	40973705	-1	6	25.7%	40.2%	762	0.65 / 0.88 = 0.74	noComparaHits: yrk	noData
p13	---	gapq	ENSP00000370742	KDR	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gapq	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	q2	/+	ENSP00000257287	CEP135	q2	q2	157.5	19	34506658	34509900	1	1	96.1%	22%	3243	0.71 / 0.92 = 0.77	noComparaHits: ENSDARG00000044212	4

region 34

syntenyRegion: Danio_rerio.glob09.13.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 13 -i 43457087:50113364 -f 50e5 some_geneID_to_be_selected
scoreRatio_sum=1.39 log_scoreRatio_sum=-0.73 focal_scoreRatio_sum=0.37
AlnScore=165 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q1	gapp	-	-	-	q1	-	-	-	-	-	-	-	-	-	-	-	-
p11	q2	/+	ENSP00000257290	PDGFRA	q2	q2	272.1	13	47837294	47891403	1	8	20.5%	53.7%	705	0.53 / 0.86 = 0.62	noComparaHits: fgfr2	noData
p12	---	gapq	ENSP00000370749	KIT	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000370742	KDR	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gapq	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	q3	/+	ENSP00000257287	CEP135	q3	q3	152.2	13	46601176	46604442	1	1	94.7%	20%	3267	0.71 / 0.92 = 0.77	noComparaHits:	6

region 35

syntenyRegion: Danio_rerio.glob23.13.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 13 -i 21708560:25248023 -f 27e5 some_geneID_to_be_selected
scoreRatio_sum=0.78 log_scoreRatio_sum=-0.24 focal_scoreRatio_sum=0.26
AlnScore=161 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000257290	PDGFRA	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000370749	KIT	q1	q1	296.8	13	23449212	23539289	1	8	29.6%	46.2%	954	0.65 / 0.83 = 0.78	noComparaHits: ret1 ; sec23ip ; LOC560826 ; c10orf119	noData
p13	---	gape	ENSP00000370742	KDR	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 36

syntenyRegion: Danio_rerio.glob53.Zv7_NA1887.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l Zv7_NA1887 -i 4935:78034 -f 55e3 some_geneID_to_be_selected
scoreRatio_sum=0.63 log_scoreRatio_sum=-0.45 focal_scoreRatio_sum=0.32
AlnScore=154 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	q1	+/+	ENSP00000257290	PDGFRA	q1	q1	300.1	Zv7_NA1887	7995	78034	1	10	38.5%	33.1%	1269	0.53 / 0.84 = 0.63	noComparaHits: ENSDARG00000040771 ; zgc:112211	noData
p12	---	gape	ENSP00000370749	KIT	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000370742	KDR	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 37

syntenyRegion: Danio_rerio.glob13.17.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 17 -i 26797807:28774665 -f 15e5 some_geneID_to_be_selected
scoreRatio_sum=1.36 log_scoreRatio_sum=-0.78 focal_scoreRatio_sum=0.36
AlnScore=145 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	q1	/+	ENSP00000257290	PDGFRA	q1	q1	227	17	28742676	28757762	1	6	22.6%	43.7%	747	0.53 / 0.88 = 0.6	noComparaHits: fyn	noData
p12	---	gapq	ENSP00000370749	KIT	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000370742	KDR	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gapq	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	q2	/+	ENSP00000257287	CEP135	q2	q2	132.1	17	27677957	27680485	1	1	74%	21%	2529	0.71 / 0.93 = 0.76	noComparaHits: smyd2 ; ENSDARG00000055133	7

region 38

syntenyRegion: Danio_rerio.glob28.20.minQN1.fac2.04.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 20 -i 49619936:56174644 -f 49e5 some_geneID_to_be_selected
scoreRatio_sum=1.5 log_scoreRatio_sum=-0.57 focal_scoreRatio_sum=0.31
AlnScore=144 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000257290	PDGFRA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	/+	ENSP00000370749	KIT	q1	q1	209.2	20	51438564	51504200	1	6	27%	37.8%	801	0.65 / 0.88 = 0.74	noComparaHits: si:ch211-122l14.1	noData
p13	---	gapq	ENSP00000370742	KDR	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gapq	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gapq	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gapq	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gapq	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gapq	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gapq	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	q2	+/+	ENSP00000257287	CEP135	q2	q2	117.4	20	50181046	50184120	-1	1	91.9%	20%	3075	0.71 / 0.94 = 0.76	noComparaHits: myh6	noData

region 39

syntenyRegion: Danio_rerio.glob16.2.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 2 -i 34524828:41354970 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=0.76 log_scoreRatio_sum=-0.26 focal_scoreRatio_sum=0.25
AlnScore=134 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000257290	PDGFRA	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000370749	KIT	q1	q1	247.5	2	35234548	35251363	1	7	30.7%	36.2%	924	0.65 / 0.86 = 0.76	noComparaHits: insra	noData
p13	---	gape	ENSP00000370742	KDR	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 40

syntenyRegion: Danio_rerio.glob24.23.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 23 -i 33310188:39929492 -f 50e5 some_geneID_to_be_selected
scoreRatio_sum=0.74 log_scoreRatio_sum=-0.29 focal_scoreRatio_sum=0.25
AlnScore=119 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000257290	PDGFRA	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000370749	KIT	q1	q1	219.4	23	38093128	38322228	-1	6	27.3%	41.8%	819	0.65 / 0.88 = 0.74	noComparaHits: LOC796774 ; src ; ENSDARG00000070197 ; mafb	noData
p13	---	gape	ENSP00000370742	KDR	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 41

syntenyRegion: Danio_rerio.glob40.8.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 8 -i 10570432:17237162 -f 50e5 some_geneID_to_be_selected
scoreRatio_sum=0.74 log_scoreRatio_sum=-0.29 focal_scoreRatio_sum=0.25
AlnScore=118 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000257290	PDGFRA	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000370749	KIT	q1	q1	217.6	8	11534038	11583329	1	6	26.8%	39.1%	759	0.65 / 0.88 = 0.74	noComparaHits: LOC570636	noData
p13	---	gape	ENSP00000370742	KDR	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 42

syntenyRegion: Danio_rerio.glob41.Zv7_scaffold2547.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l Zv7_scaffold2547 -i 9704:328498 -f 24e4 some_geneID_to_be_selected
scoreRatio_sum=0.74 log_scoreRatio_sum=-0.29 focal_scoreRatio_sum=0.25
AlnScore=118 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000257290	PDGFRA	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000370749	KIT	q1	q1	218	Zv7_scaffold2547	9704	68939	1	6	30.7%	36%	936	0.65 / 0.88 = 0.74	noComparaHits: ENSDARG00000040258	noData
p13	---	gape	ENSP00000370742	KDR	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 43

syntenyRegion: Danio_rerio.glob47.23.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 23 -i 3743146:5619436 -f 14e5 some_geneID_to_be_selected
scoreRatio_sum=0.6 log_scoreRatio_sum=-0.5 focal_scoreRatio_sum=0.3
AlnScore=116 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	q1	+/+	ENSP00000257290	PDGFRA	q1	q1	226.3	23	5510045	5522331	1	5	25.4%	41.7%	870	0.53 / 0.88 = 0.6	noComparaHits: LOC569951	noData
p12	---	gape	ENSP00000370749	KIT	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000370742	KDR	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 44

syntenyRegion: Danio_rerio.glob15.20.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 20 -i 17871502:20112683 -f 17e5 some_geneID_to_be_selected
scoreRatio_sum=0.74 log_scoreRatio_sum=-0.29 focal_scoreRatio_sum=0.25
AlnScore=115 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000257290	PDGFRA	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000370749	KIT	q1	q1	212.1	20	19078744	19301773	1	6	21.7%	48%	645	0.65 / 0.88 = 0.74	noComparaHits: si:dkey-33i22.2 ; ENSDARG00000070596 ; sox7 ; pinx1 ; tdh ; mtmr9	noData
p13	---	gape	ENSP00000370742	KDR	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 45

syntenyRegion: Danio_rerio.glob37.20.minQN1.fac2.05.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 20 -i 16016:247749 -f 17e4 some_geneID_to_be_selected
scoreRatio_sum=0.6 log_scoreRatio_sum=-0.5 focal_scoreRatio_sum=0.3
AlnScore=114 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	q1	+/+	ENSP00000257290	PDGFRA	q1	q1	222	20	16016	23363	1	5	27.5%	39.7%	861	0.53 / 0.88 = 0.6	noComparaHits: LOC567549	noData
p12	---	gape	ENSP00000370749	KIT	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000370742	KDR	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 46

syntenyRegion: Danio_rerio.glob51.2.minQN1.fac2.04.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 2 -i 47645691:48938249 -f 97e4 some_geneID_to_be_selected
scoreRatio_sum=0.6 log_scoreRatio_sum=-0.5 focal_scoreRatio_sum=0.3
AlnScore=114 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	q1	+/+	ENSP00000257290	PDGFRA	q1	q1	223.5	2	47653433	47669628	-1	5	23.5%	41.5%	786	0.53 / 0.88 = 0.6	noComparaHits: zgc:92124	noData
p12	---	gape	ENSP00000370749	KIT	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000370742	KDR	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 47

syntenyRegion: Danio_rerio.glob50.8.minQN1.fac2.04.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 8 -i 33468887:35143409 -f 13e5 some_geneID_to_be_selected
scoreRatio_sum=0.73 log_scoreRatio_sum=-0.3 focal_scoreRatio_sum=0.24
AlnScore=109 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000257290	PDGFRA	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000370749	KIT	q1	q1	202.3	8	33771931	33785982	-1	5	25.2%	39.5%	765	0.65 / 0.89 = 0.73	noComparaHits: LOC570592	noData
p13	---	gape	ENSP00000370742	KDR	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 48

syntenyRegion: Danio_rerio.glob26.18.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 18 -i 43911103:46191711 -f 17e5 some_geneID_to_be_selected
scoreRatio_sum=0.73 log_scoreRatio_sum=-0.3 focal_scoreRatio_sum=0.24
AlnScore=106 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000257290	PDGFRA	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000370749	KIT	q1	q1	196.1	18	45662265	45686065	1	5	27.2%	35.6%	813	0.65 / 0.89 = 0.73	noComparaHits: si:ch211-176k6.1	noData
p13	---	gape	ENSP00000370742	KDR	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 49

syntenyRegion: Danio_rerio.glob55.Zv7_NA1005.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l Zv7_NA1005 -i 565:85991 -f 64e3 some_geneID_to_be_selected
scoreRatio_sum=0.73 log_scoreRatio_sum=-0.3 focal_scoreRatio_sum=0.24
AlnScore=106 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000257290	PDGFRA	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000370749	KIT	q1	q1	195.6	Zv7_NA1005	6222	85991	1	5	26.1%	36.1%	777	0.65 / 0.89 = 0.73	noComparaHits: zgc:64141 ; zgc:110264 ; ENSDARG00000054944	noData
p13	---	gape	ENSP00000370742	KDR	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 50

syntenyRegion: Danio_rerio.glob54.Zv7_NA1361.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l Zv7_NA1361 -i 16920:53460 -f 27e3 some_geneID_to_be_selected
scoreRatio_sum=0.73 log_scoreRatio_sum=-0.3 focal_scoreRatio_sum=0.24
AlnScore=103 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000257290	PDGFRA	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000370749	KIT	q1	q1	191.4	Zv7_NA1361	16920	53457	1	5	25.1%	37.9%	735	0.65 / 0.89 = 0.73	noComparaHits: rtk8	noData
p13	---	gape	ENSP00000370742	KDR	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 51

syntenyRegion: Danio_rerio.glob25.11.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 11 -i 24829642:26264263 -f 11e5 some_geneID_to_be_selected
scoreRatio_sum=0.72 log_scoreRatio_sum=-0.32 focal_scoreRatio_sum=0.24
AlnScore=96 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000257290	PDGFRA	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000370749	KIT	q1	q1	178.1	11	25649581	25697911	1	5	32.4%	31.3%	930	0.65 / 0.9 = 0.72	noComparaHits: zgc:112296	noData
p13	---	gape	ENSP00000370742	KDR	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 52

syntenyRegion: Danio_rerio.glob56.16.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 16 -i 8511421:9783639 -f 95e4 some_geneID_to_be_selected
scoreRatio_sum=0.59 log_scoreRatio_sum=-0.52 focal_scoreRatio_sum=0.3
AlnScore=90 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	q1	+/+	ENSP00000257290	PDGFRA	q1	q1	176.3	16	9003889	9010989	-1	4	24.4%	33.8%	819	0.53 / 0.9 = 0.59	noComparaHits: LOC555259	noData
p12	---	gape	ENSP00000370749	KIT	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000370742	KDR	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 53

syntenyRegion: Danio_rerio.glob45.16.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 16 -i 20991501:27826543 -f 51e5 some_geneID_to_be_selected
scoreRatio_sum=0.58 log_scoreRatio_sum=-0.53 focal_scoreRatio_sum=0.29
AlnScore=89 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	q1	+/+	ENSP00000257290	PDGFRA	q1	q1	173.6	16	27432254	27459711	-1	5	18.9%	40%	615	0.53 / 0.91 = 0.58	noComparaHits: ptk2.1	noData
p12	---	gape	ENSP00000370749	KIT	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000370742	KDR	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 54

syntenyRegion: Danio_rerio.glob21.2.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 2 -i 9851561:16422369 -f 49e5 some_geneID_to_be_selected
scoreRatio_sum=0.71 log_scoreRatio_sum=-0.33 focal_scoreRatio_sum=0.24
AlnScore=88 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000257290	PDGFRA	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000370749	KIT	q1	q1	162.4	2	15980488	16001277	-1	4	19.3%	40.7%	567	0.65 / 0.91 = 0.71	noComparaHits:	noData
p13	---	gape	ENSP00000370742	KDR	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 55

syntenyRegion: Danio_rerio.glob43.22.minQN1.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 22 -i 2641092:8169804 -f 41e5 some_geneID_to_be_selected
scoreRatio_sum=0.71 log_scoreRatio_sum=-0.33 focal_scoreRatio_sum=0.24
AlnScore=82 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000257290	PDGFRA	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000370749	KIT	q1	q1	152.4	22	2641092	2644478	-1	3	16.6%	44.2%	471	0.65 / 0.91 = 0.71	noComparaHits:	noData
p13	---	gape	ENSP00000370742	KDR	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 56

syntenyRegion: Danio_rerio.glob60.Zv7_NA3755.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l Zv7_NA3755 -i 9743:21073 -f 85e2 some_geneID_to_be_selected
scoreRatio_sum=0.58 log_scoreRatio_sum=-0.53 focal_scoreRatio_sum=0.29
AlnScore=79 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	q1	+/+	ENSP00000257290	PDGFRA	q1	q1	154.2	Zv7_NA3755	9743	21073	1	5	19.8%	36.4%	636	0.53 / 0.92 = 0.58	noComparaHits: LOC793566	noData
p12	---	gape	ENSP00000370749	KIT	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000370742	KDR	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 57

syntenyRegion: Danio_rerio.glob33.18.minQN1.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 18 -i 22136544:27133895 -f 37e5 some_geneID_to_be_selected
scoreRatio_sum=0.77 log_scoreRatio_sum=-0.25 focal_scoreRatio_sum=0.06
AlnScore=76 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000257290	PDGFRA	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gaps	ENSP00000370749	KIT	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gaps	ENSP00000370742	KDR	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gaps	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gaps	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gaps	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gaps	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gaps	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gaps	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gaps	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	q1	+/+	ENSP00000257287	CEP135	q1	q1	153.4	18	26945491	27133895	1	2	94.6%	20.6%	3297	0.71 / 0.92 = 0.77	noComparaHits: si:dkey-220e7.5 ; si:busm1-241h12.4 ; ENSDARG00000056266 ; ENSDARG00000007976 ; cenpn ; si:busm1-172e19.1 ; zgc:153067	5

region 58

syntenyRegion: Danio_rerio.glob38.Zv7_NA3308.minQN1.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l Zv7_NA3308 -i 1701:9224 -f 56e2 some_geneID_to_be_selected
scoreRatio_sum=0.71 log_scoreRatio_sum=-0.33 focal_scoreRatio_sum=0.24
AlnScore=73 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000370771 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000226440	USP46	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000355331	NM_024534	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000370824	RASL11B	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000373593	SCFD2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000336752	FIP1L1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000370784	LNX1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000370782	LOC441016	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000353928	NP_001011538.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000370773	CHIC2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000370771	GSH2_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000257290	PDGFRA	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000370749	KIT	q1	q1	136	Zv7_NA3308	1731	9224	-1	3	14%	40.4%	399	0.65 / 0.92 = 0.71	noComparaHits: CSK (1 of 3)	noData
p13	---	gape	ENSP00000370742	KDR	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000318188	NP_078868.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p15	---	gape	ENSP00000370736	TMEM165	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p16	---	gape	ENSP00000370726	CLOCK	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p17	---	gape	ENSP00000295645	PDCL2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p18	---	gape	ENSP00000370717	NMU	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p19	---	gape	ENSP00000370715	hCG_2040572	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p20	---	gape	ENSP00000370695	EXOC1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p21	---	gape	ENSP00000257287	CEP135	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

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Overview on processed synteny regions for C3_GSH2_HUMAN_ENSG00000180613_2e6.protein.info

Data table for reference protein loci

Parameter used for the loci-alignments

Rank	AlnScore	RatioSum	logRatioSum	focalRatioSum	TargetGenome	chr	startPos	endPos	hitsCount	queryCov	meanIdentity	ori	score	compara
1	4756	13.56	3.23	3.98	Danio_rerio	20	20517784	20518810	2	65.8%	73.9%	1	278	ortholog_one2many: gsh2
2	1880	4.15	0.91	0.99	Danio_rerio	1
3	1595	1.82	-2.52	0.44	Danio_rerio	14
4	1478	2.04	-1.47	0.42	Danio_rerio	24
5	1424	1.69	-0.33	0.19	Danio_rerio	7
6	1246	8.43	2.22	0.76	Danio_rerio	20
7	507	2.72	-1.56	1.47	Danio_rerio	5	60832994	60833656	1	68.1%	44.1%	-1	134.6	between_species_paralog: gsh1
8	488	1.68	-0.37	0.5	Danio_rerio	21
9	469	1.59	-0.46	0.68	Danio_rerio	14
10	410	1	0	0.25	Danio_rerio	14
11	314	1.37	-0.76	0.38	Danio_rerio	22
12	304	1.97	-1.26	0.71	Danio_rerio	10
13	303	0.94	-0.05	0.31	Danio_rerio	Zv7_NA3207
14	299	1.97	-1.26	0.7	Danio_rerio	25
15	273	0.81	-2.73	0.25	Danio_rerio	1
16	269	1.38	-0.74	0.57	Danio_rerio	8
17	253	1.95	-1.29	0.7	Danio_rerio	2
18	235	1.36	-0.77	0.55	Danio_rerio	23
19	233	0.67	-2.94	0.3	Danio_rerio	9
20	232	1.39	-0.73	0.34	Danio_rerio	18
21	230	1.47	-0.61	0.77	Danio_rerio	19	10539137	10540084	2	24%	62.7%	1	102	noComparaHits: hoxa3a
22	222	1.33	-0.82	0.54	Danio_rerio	7
23	203	1.91	-1.36	0.68	Danio_rerio	7
24	200	1.32	-0.83	0.54	Danio_rerio	5
25	189	1.24	-0.95	0.46	Danio_rerio	17
26	186	0.65	-0.42	0.33	Danio_rerio	13
27	185	1.31	-0.84	0.54	Danio_rerio	8
28	181	1.32	-0.84	0.54	Danio_rerio	6
29	178	1.31	-0.85	0.53	Danio_rerio	2
30	175	2.08	-1.1	0.45	Danio_rerio	15
31	171	0.79	-0.23	0.26	Danio_rerio	10
32	170	1.31	-0.84	0.54	Danio_rerio	6
33	169	1.51	-0.55	0.31	Danio_rerio	19
34	165	1.39	-0.73	0.37	Danio_rerio	13
35	161	0.78	-0.24	0.26	Danio_rerio	13
36	154	0.63	-0.45	0.32	Danio_rerio	Zv7_NA1887
37	145	1.36	-0.78	0.36	Danio_rerio	17
38	144	1.5	-0.57	0.31	Danio_rerio	20
39	134	0.76	-0.26	0.25	Danio_rerio	2
40	119	0.74	-0.29	0.25	Danio_rerio	23
41	118	0.74	-0.29	0.25	Danio_rerio	8
42	118	0.74	-0.29	0.25	Danio_rerio	Zv7_scaffold2547
43	116	0.6	-0.5	0.3	Danio_rerio	23
44	115	0.74	-0.29	0.25	Danio_rerio	20
45	114	0.6	-0.5	0.3	Danio_rerio	20
46	114	0.6	-0.5	0.3	Danio_rerio	2
47	109	0.73	-0.3	0.24	Danio_rerio	8
48	106	0.73	-0.3	0.24	Danio_rerio	18
49	106	0.73	-0.3	0.24	Danio_rerio	Zv7_NA1005
50	103	0.73	-0.3	0.24	Danio_rerio	Zv7_NA1361
51	96	0.72	-0.32	0.24	Danio_rerio	11
52	90	0.59	-0.52	0.3	Danio_rerio	16
53	89	0.58	-0.53	0.29	Danio_rerio	16
54	88	0.71	-0.33	0.24	Danio_rerio	2
55	82	0.71	-0.33	0.24	Danio_rerio	22
56	79	0.58	-0.53	0.29	Danio_rerio	Zv7_NA3755
57	76	0.77	-0.25	0.06	Danio_rerio	18
58	73	0.71	-0.33	0.24	Danio_rerio	Zv7_NA3308