HOXB9_ENSG00000170689_2e5.protein.info Alignment Results

Rank	AlnScore	RatioSum	logRatioSum	focalRatioSum	TargetGenome	chr	startPos	endPos	hitsCount	queryCov	meanIdentity	ori	score	compara
1	12998	774	52.47	212.6	Homo_sapiens	17	44055264	44058630	2	100%	99.6%	-1	520	within_species_paralog: HOXB9
2	11658	292.55	32.53	120.1	Macaca_mulatta	16	32852655	32856017	2	100%	98.8%	-1	517	ortholog_one2one: HOXB9
3	10240	202.05	26.34	94.75	Canis_familiaris	9	28212641	28216111	2	100%	98.8%	-1	518	ortholog_one2one: 608958
4	9660	187.2	24.67	51.52	Mus_musculus	11	96087632	96090946	2	100%	81.9%	1	468	ortholog_one2one: Hoxb9
5	7560	34.83	10.78	12.35	Monodelphis_domestica	2	201204822	201208661	2	100%	90.4%	-1	474	ortholog_one2one: HOXB9
6	2532	11.72	4.02	1.29	Bos_taurus	19
7	5955	13.86	2.8	4.66	Danio_rerio	3	23019694	23022949	2	100%	72.7%	-1	366	ortholog_one2many: hoxb9a
8	3940	11.93	2.52	5.74	Gallus_gallus	27	3563906	3568219	2	100%	81.2%	1	429	ortholog_one2one: HOXB9
9	5242	12.59	2.2	4.21	Xenopus_tropicalis	scaffold_334	584781	589462	2	98.8%	64.4%	-1	308	ortholog_one2one: HOXB9
10	4007	9.37	1.39	3.53	Bos_taurus	19	31239435	31242559	2	65.2%	99.4%	-1	340	ortholog_one2one: HOXB9
11	703	1.83	0.6	1.83	Danio_rerio	24	25215421	25218683	2	100%	72.7%	1	366	ortholog_one2many: hoxb9a
12	2440	5.59	0.54	1.36	Danio_rerio	12
13	481	1.14	0.13	0.38	Takifugu_rubripes	scaffold_3110
14	586	1.05	0.05	0.15	Gasterosteus_aculeatus	contig_9873
15	547	1.04	0.04	0.21	Takifugu_rubripes	scaffold_3809
16	1232	3.05	0.03	0.35	Gasterosteus_aculeatus	contig_9872
17	471	1.02	0.02	1.02	Danio_rerio	2	12067419	12068514	2	100%	45.3%	-1	245	between_species_paralog: hoxd9a
18	454	0.98	-0.01	0.98	Gallus_gallus	Un_random	20045138	20048409	2	98.8%	51.5%	-1	236.2	between_species_paralog: HXD9_CHICK
19	394	0.97	-0.02	0.32	Gallus_gallus	Un_random
20	1270	2.94	-0.06	1.37	Danio_rerio	16	21188212	21189738	2	100%	48.6%	1	212.5	between_species_paralog: hoxa9b
21	362	0.92	-0.07	0.31	Danio_rerio	6
22	823	2.01	-0.08	1.14	Gallus_gallus	Un_random	27778827	27779045	1	29.2%	75.3%	-1	124	noComparaHits: 430550
23	4290	9.05	-0.11	2.9	Tetraodon_nigroviridis	Un_random	38140058	38146583	2	99.6%	62.4%	-1	312	noComparaHits: GSTENG00020456001
24	4318	8.86	-0.14	2.45	Homo_sapiens	7	27169753	27171601	2	93.2%	48.4%	-1	228.6	within_species_paralog: HOXA9
25	760	1.84	-0.16	1.25	Bos_taurus	4	40177480	40179373	2	94.8%	49.2%	1	229.6	between_species_paralog: HOXA9
26	1921	4.97	-0.17	0.87	Takifugu_rubripes	scaffold_130
27	1925	4.92	-0.2	0.86	Oryzias_latipes	19
28	400	0.8	-0.21	0.16	Danio_rerio	11
29	1396	2.79	-0.22	1.26	Danio_rerio	9	1580195	1581290	2	100%	45.3%	-1	245	between_species_paralog: hoxd9a
30	395	0.78	-0.24	0.16	Monodelphis_domestica	Un
31	1322	3.28	-0.25	1.35	Danio_rerio	3
32	345	0.77	-0.25	0.1	Tetraodon_nigroviridis	Un_random
33	284	0.75	-0.28	0.75	Takifugu_rubripes	scaffold_4108	5966	6196	1	30.8%	89.6%	1	148	noComparaHits: NEWSINFRUG00000159744
34	3648	7.72	-0.29	2.25	Macaca_mulatta	3	99059984	99061844	2	93.2%	49.6%	1	229.8	between_species_paralog: HOXA9
35	278	0.74	-0.29	0.74	Macaca_mulatta	1099214175475	342	563	1	29.6%	89.2%	1	145	noComparaHits:
36	663	1.74	-0.31	1.04	Gasterosteus_aculeatus	contig_2345	4584	4796	1	28.4%	73.2%	-1	117	noComparaHits: ENSGACG00000007128
37	4237	8.71	-0.31	2.43	Mus_musculus	6	52153833	52155687	2	94.8%	49.4%	-1	231.8	between_species_paralog: Hoxa9
38	836	1.69	-0.33	0.43	Takifugu_rubripes	scaffold_346
39	1343	2.67	-0.34	1.14	Oryzias_latipes	21	24614922	24616096	2	70.4%	57.4%	1	217.2	between_species_paralog: HXD9_ORYLA
40	224	0.7	-0.35	0.7	Tetraodon_nigroviridis	3	679926	680150	1	30%	72%	-1	121	noComparaHits: GSTENG00031864001
41	1316	2.65	-0.36	1.14	Takifugu_rubripes	scaffold_100	358383	359535	2	100%	45.2%	-1	214	between_species_paralog: NEWSINFRUG00000124776
42	1332	2.65	-0.36	1.12	Tetraodon_nigroviridis	2	11097829	11098947	2	70%	54.1%	-1	207.5	between_species_paralog: GSTENG00031462001
43	1325	2.65	-0.37	1.16	Gasterosteus_aculeatus	contig_5303	254049	255336	3	67.6%	57.2%	1	219.7	noComparaHits: Q4VQD4_GASAC
44	1325	2.65	-0.37	1.16	Gasterosteus_aculeatus	groupXVI	9814144	9815431	3	67.6%	57.2%	-1	219.7	between_species_paralog: Q4VQD4_GASAC
45	1819	4.73	-0.41	0.82	Tetraodon_nigroviridis	2
46	333	0.65	-0.42	0.09	Gallus_gallus	Un_random
47	144	0.65	-0.42	0.07	Gallus_gallus	1
48	152	0.65	-0.42	0.07	Bos_taurus	12
49	146	0.65	-0.42	0.07	Canis_familiaris	25
50	149	0.65	-0.42	0.07	Mus_musculus	5
51	266	0.64	-0.44	0.13	Gallus_gallus	Un_random
52	1030	2.62	-0.44	1.17	Gasterosteus_aculeatus	contig_1095	43338	43568	1	30.8%	79.2%	1	133	noComparaHits: ENSGACG00000008310
53	1030	2.62	-0.44	1.17	Gasterosteus_aculeatus	groupXX	9727578	9727808	1	30.8%	79.2%	1	133	between_species_paralog: ENSGACG00000008310
54	4150	8.6	-0.44	2.48	Xenopus_tropicalis	scaffold_56	1415310	1416632	2	81.6%	56.7%	1	248	noComparaHits: ENSXETG00000000724
55	283	0.61	-0.48	0.09	Gasterosteus_aculeatus	contig_4903
56	995	2.56	-0.49	1.14	Takifugu_rubripes	scaffold_48	1063099	1063329	1	30.8%	79.2%	-1	134	between_species_paralog: NEWSINFRUG00000138062
57	2530	5.52	-0.5	2.09	Bos_taurus	2	16998559	16999927	2	70.8%	62.2%	-1	239.7	between_species_paralog: HOXD9
58	983	2.56	-0.51	1.16	Oryzias_latipes	16	13131574	13131804	1	30.8%	77.9%	1	131	between_species_paralog: Q3V626_ORYLA
59	125	0.57	-0.55	0.07	Macaca_mulatta	17
60	2496	5.48	-0.55	2.07	Homo_sapiens	2	176695773	176697131	2	74.4%	60.4%	1	240.1	within_species_paralog: HOXD9
61	128	0.57	-0.55	0.07	Homo_sapiens	13
62	118	0.57	-0.55	0.07	Oryzias_latipes	2
63	122	0.57	-0.55	0.07	Monodelphis_domestica	4
64	118	0.57	-0.55	0.07	Tetraodon_nigroviridis	6
65	811	1.51	-0.56	0.27	Gasterosteus_aculeatus	contig_9874
66	3230	6.5	-0.58	1.09	Bos_taurus	4
67	3010	6.46	-0.58	1.81	Oryzias_latipes	11	10539594	10540702	2	98.4%	47.9%	-1	206.9	noComparaHits: Q9PTV6_ORYLA
68	2491	5.44	-0.6	2.05	Mus_musculus	2	74498895	74500242	2	70.8%	62.9%	1	240.1	between_species_paralog: Hoxd9
69	221	0.53	-0.62	0.27	Tetraodon_nigroviridis	Un_random
70	2468	5.4	-0.65	2.08	Monodelphis_domestica	4	187464529	187465943	2	72%	64.8%	1	252	between_species_paralog: HOXD9
71	4053	8.41	-0.67	2.38	Canis_familiaris	14	43293510	43295428	2	93.2%	49.6%	-1	229.4	between_species_paralog: 482372
72	617	1.4	-0.72	0.99	Gasterosteus_aculeatus	contig_9877	25719	26330	1	69.2%	51.5%	-1	169	noComparaHits:
73	2416	5.31	-0.74	2.03	Xenopus_tropicalis	scaffold_163	619625	620793	2	77.6%	58%	-1	240.4	between_species_paralog: HOXD9
74	2879	6.34	-0.75	1.8	Tetraodon_nigroviridis	21	3012226	3013360	2	69.6%	58.9%	1	201.9	between_species_paralog: HOXA9 ; GSTENG00017478001
75	2910	6.31	-0.77	1.79	Takifugu_rubripes	scaffold_12	2360033	2361166	2	69.6%	59.4%	-1	203.9	between_species_paralog: HXA9_FUGRU
76	1145	3.35	-0.78	0.55	Gasterosteus_aculeatus	groupV
77	938	2.34	-0.79	0.3	Gasterosteus_aculeatus	contig_6417
78	780	2.3	-0.8	1.06	Tetraodon_nigroviridis	8	6620995	6621225	1	30.8%	80.5%	1	135	between_species_paralog: HOXAb9
79	533	1.32	-0.83	0.8	Oryzias_latipes	15	4374398	4374607	1	28%	85.7%	-1	130	noComparaHits: Q9PVR1_ORYLA
80	521	1.32	-0.83	0.8	Gasterosteus_aculeatus	groupVI	16162361	16162570	1	28%	84.3%	1	129	noComparaHits: ENSGACG00000011902
81	517	1.31	-0.84	0.8	Takifugu_rubripes	scaffold_39	584702	584911	1	28%	84.3%	1	129	noComparaHits: Q4VN43_FUGRU
82	486	1.29	-0.87	0.77	Tetraodon_nigroviridis	17	9576378	9576557	1	24%	83.3%	1	110	noComparaHits: GSTENG00018723001 ; HOXDb9
83	3853	8.25	-0.9	2.14	Monodelphis_domestica	8	293268693	293268905	1	28.4%	77.5%	1	122	noComparaHits: HOXA10
84	2326	5.14	-0.93	1.63	Danio_rerio	19	13916949	13917988	2	70.4%	57.5%	1	200.2	between_species_paralog: hoxa9a
85	4398	9.29	-0.97	2.55	Takifugu_rubripes	scaffold_41	540967	541197	1	30.8%	89.6%	1	148	noComparaHits: NEWSINFRUG00000160069
86	2542	5.14	-1.02	2.13	Homo_sapiens	12	52680240	52682704	2	80.8%	55.3%	1	238.6	within_species_paralog: HOXC9
87	3318	7.09	-1.05	2.03	Gasterosteus_aculeatus	groupX	9901374	9902621	2	66%	64.1%	-1	211	between_species_paralog: ENSGACG00000007123
88	2146	4.13	-1.07	1.82	Gasterosteus_aculeatus	contig_2643	45188	46955	2	98.8%	51%	-1	233.7	noComparaHits: ENSGACG00000009396
89	3032	6.08	-1.07	2.31	Xenopus_tropicalis	scaffold_226	388156	390480	2	75.2%	62.8%	1	241.1	noComparaHits: hoxc9
90	2529	5.12	-1.08	2.15	Takifugu_rubripes	scaffold_66	154997	156667	2	74.8%	61.6%	-1	230.7	between_species_paralog: HXC9_FUGRU
91	2538	5.13	-1.08	2.19	Oryzias_latipes	7	12875582	12877173	2	99.2%	51.2%	1	240.8	between_species_paralog: HXC9_ORYLA
92	2194	5.03	-1.09	1.71	Macaca_mulatta	12	39760168	39760383	1	28.8%	75%	1	122	noComparaHits: HOXD10
93	3714	8.13	-1.1	2.14	Gasterosteus_aculeatus	groupXI	1617567	1618178	1	69.2%	51.5%	1	169	noComparaHits:
94	3779	8.01	-1.11	2.26	Oryzias_latipes	8	24308256	24308879	1	70.4%	48.1%	1	153	ortholog_one2one: Q3V615_ORYLA
95	2441	5.04	-1.16	2.24	Tetraodon_nigroviridis	9	4222544	4224247	2	98.8%	50.6%	1	229.1	between_species_paralog: HOXC9 ; GSTENG00028039001
96	2432	4.91	-1.28	2.02	Bos_taurus	5	16811884	16814511	2	80.8%	55.3%	-1	237.8	between_species_paralog: HOXC9
97	2732	5.86	-1.32	1.5	Gasterosteus_aculeatus	contig_2344	65926	66144	1	29.2%	84.9%	-1	134	noComparaHits:
98	2684	5.9	-1.33	2.22	Gasterosteus_aculeatus	groupXII	11616265	11618032	2	98.8%	51%	1	233.7	between_species_paralog: ENSGACG00000009396
99	2314	4.84	-1.38	1.85	Canis_familiaris	27	4274772	4274990	1	29.2%	75.3%	-1	124	noComparaHits: HOXC10
100	1984	4.75	-1.42	1.67	Canis_familiaris	36	22958879	22959100	1	29.6%	89.2%	1	145	noComparaHits: ENSCAFG00000023404
101	1763	4.49	-1.77	1.57	Gallus_gallus	7	17409431	17409745	1	41.2%	45.7%	-1	100	noComparaHits: NP_997060.1
102	3331	7.49	-1.81	2.24	Gallus_gallus	2	32579722	32581455	2	89.2%	54.6%	-1	248	between_species_paralog: HXA9_CHICK
103	2758	6.48	-1.87	2.43	Danio_rerio	23	35676857	35678677	2	98.8%	49.5%	1	240.1	between_species_paralog: hoxc9a
104	1921	4.31	-2.09	1.96	Macaca_mulatta	11	51098616	51101071	2	98.8%	45.6%	1	239	between_species_paralog: HOXC9
105	2468	5.19	-2.23	2.1	Mus_musculus	15	102809687	102812152	2	80.8%	55.3%	1	237.8	between_species_paralog: Hoxc9

Data table for reference protein loci

QueryProtein(s)=ENSP00000309439 (contained in p10)
QueryGenome=Homo_sapiens

ref-loci	geneName	protID	transID	geneID	protName	chr	startPos	endPos	meanPos	ori	numExons	protLength	selfscore
p1	HOXB1	ENSP00000355140	ENST00000239174	ENSG00000120094	HXB1_HUMAN	17	43961908	43963265	43962807	-1	2	301	639
p2	HOXB2	ENSP00000331741	ENST00000330070	ENSG00000173917	HXB2_HUMAN	17	43975429	43977272	43975960	-1	2	356	701
p3	HOXB3	ENSP00000308252	ENST00000311626	ENSG00000120093	HXB3_HUMAN	17	43982695	43984835	43983337	-1	2	431	842
p4	HOXB4	ENSP00000328928	ENST00000332503	ENSG00000182742	HXB4_HUMAN	17	44009083	44010680	44010297	-1	2	251	501
p5	HOXB5	ENSP00000239151	ENST00000239151	ENSG00000120075	HXB5_HUMAN	17	44024570	44026043	44025633	-1	2	269	548
p6	HOXB6	ENSP00000225648	ENST00000225648	ENSG00000108511	HXB6_HUMAN	17	44028774	44030511	44030170	-1	2	224	477
p7	-	ENSP00000365889	ENST00000376699	ENSG00000204609	-	17	44034852	44038674	44038504	1	3	109	215
p8	HOXB7	ENSP00000239165	ENST00000239165	ENSG00000120087	HXB7_HUMAN	17	44040203	44043279	44042947	-1	2	217	440
p9	HOXB8	ENSP00000239144	ENST00000239144	ENSG00000120068	HXB8_HUMAN	17	44045563	44047065	44046694	-1	2	243	514
p10	HOXB9	ENSP00000309439	ENST00000311177	ENSG00000170689	HXB9_HUMAN	17	44055261	44058630	44058250	-1	2	250	520
p11	NP_115767.1	ENSP00000290294	ENST00000290294	ENSG00000159182	NP_115767.1	17	44154162	44154753	44154243	-1	2	57	55.5
p12	HOXB13	ENSP00000290295	ENST00000290295	ENSG00000159184	HXB13_HUMAN	17	44159151	44160954	44160523	-1	2	284	609
p13	TTLL6	ENSP00000302547	ENST00000305326	ENSG00000170703	NP_775894.1	17	44201350	44226596	44217497	-1	8	569	1149
p14	Q658K6_HUMAN	ENSP00000365871	ENST00000376681	ENSG00000204606	Q658K6_HUMAN	17	44236656	44249439	44237177	-1	3	185	321

total length of ref-loci (on slice) = 287532 (29e4)

region 1 (region 1 for Hsap)

syntenyRegion: Homo_sapiens.glob01.17.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 17 -i 43961824:44249439 -f 22e4 some_geneID_to_be_selected
scoreRatio_sum=774 log_scoreRatio_sum=52.47 focal_scoreRatio_sum=212.6
AlnScore=12998 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Homo_sapiens

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	639	17	43961911	43963265	-1	2	100%	95.9%	960	0.67 / 0.01 = 67	noComparaHits: HOXB1	1
p2	q2	+/+	ENSP00000331741	HOXB2	q2	q2	701	17	43975432	43977272	-1	2	100%	95.8%	1074	0.55 / 0.01 = 55	within_species_paralog: HOXB2	1
p3	q3	+/+	ENSP00000308252	HOXB3	q3	q3	842	17	43982698	43984835	-1	2	100%	93%	1293	0.5 / 0.01 = 50	within_species_paralog: HOXB3	1
p4	q4	+/+	ENSP00000328928	HOXB4	q4	q4	501	17	44009086	44010680	-1	2	100%	92.2%	768	0.43 / 0.01 = 43	within_species_paralog: HOXB4	1
p5	q5	+/+	ENSP00000239151	HOXB5	q5	q5	548	17	44024573	44026043	-1	2	100%	100%	807	0.4 / 0.01 = 40	within_species_paralog: HOXB5	1
p6	q6	+/+	ENSP00000225648	HOXB6	q6	q6	477	17	44028777	44030511	-1	2	100%	98.3%	690	0.47 / 0.01 = 47	within_species_paralog: HOXB6	1
p7	q7	+/+	ENSP00000365889	-	q7	q7	215	17	44036275	44038671	1	2	95.4%	78.4%	411	1 / 0.01 = 100	noComparaHits: HOXB6 ; ENSG00000204609	1
p8	q8	+/+	ENSP00000239165	HOXB7	q8	q8	440	17	44040218	44043279	-1	2	98.2%	96.4%	660	0.42 / 0.01 = 42	within_species_paralog: HOXB7	1
p9	q9	+/+	ENSP00000239144	HOXB8	q9	q9	514	17	44045566	44047065	-1	2	100%	89.4%	849	0.41 / 0.01 = 41	within_species_paralog: HOXB8	1
p10	q10	+/+	ENSP00000309439	HOXB9	q10	q10	520	17	44055264	44058630	-1	2	100%	99.6%	750	0.53 / 0.01 = 53	within_species_paralog: HOXB9	1
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q11	+/+	ENSP00000290295	HOXB13	q11	q11	609	17	44159154	44160954	-1	2	100%	93.3%	936	0.58 / 0.01 = 58	within_species_paralog: HOXB13	1
p13	q12	+/+	ENSP00000302547	TTLL6	q12	q12	1149	17	44201353	44223966	-1	7	97.5%	98.2%	1713	0.78 / 0.01 = 78	within_species_paralog: TTLL6	1
p14	q13	+/+	ENSP00000365871	Q658K6_HUMAN	q13	q13	321	17	44236659	44237431	-1	2	96.2%	87.4%	540	1 / 0.01 = 100	noComparaHits: Q658K6_HUMAN	1

region 2 (region 1 for Mmul)

syntenyRegion: Macaca_mulatta.glob01.16.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 16 -i 32758343:33041955 -f 21e4 some_geneID_to_be_selected
scoreRatio_sum=292.55 log_scoreRatio_sum=32.53 focal_scoreRatio_sum=120.1
AlnScore=11658 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Macaca_mulatta

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	601	16	32758430	32759792	-1	2	100%	92.9%	927	0.67 / 0.05 = 13.4	ortholog_one2one: HOXB1	1
p2	q2	+/+	ENSP00000331741	HOXB2	q2	q2	397	16	32771906	32772592	-1	1	64%	86.5%	687	0.55 / 0.43 = 1.28	noComparaHits: ENSMMUG00000022211	1
p3	q3	+/+	ENSP00000308252	HOXB3	q3	q3	731	16	32779070	32781189	-1	2	81.2%	97.1%	1050	0.5 / 0.13 = 3.85	noComparaHits:	1
p4	q4	+/+	ENSP00000328928	HOXB4	q4	q4	432	16	32806478	32807983	-1	2	88.4%	89.4%	681	0.43 / 0.13 = 3.31	ortholog_one2one: HOXB4	1
p5	q5	+/+	ENSP00000239151	HOXB5	q5	q5	546	16	32821961	32823429	-1	2	100%	99.6%	807	0.4 / 0.01 = 40	ortholog_one2one: HOXB5	1
p6	q6	+/+	ENSP00000225648	HOXB6	q6	q6	472	16	32826127	32827850	-1	2	100%	97%	690	0.47 / 0.01 = 47	ortholog_one2one: HOXB6	1
p7	q7	+/+	ENSP00000365889	-	q7	q7	183.2	16	32833634	32836028	1	2	95.4%	69.6%	399	1 / 0.14 = 7.14	noComparaHits: HOXB6	1
p8	q8	+/+	ENSP00000239165	HOXB7	q8	q8	426	16	32837563	32840308	-1	2	96.8%	84.2%	759	0.42 / 0.03 = 14	ortholog_one2one: HOXB7	1
p9	q9	+/+	ENSP00000239144	HOXB8	q9	q9	513	16	32842608	32844111	-1	2	100%	100%	729	0.41 / 0.01 = 41	ortholog_one2one: HOXB8	1
p10	q10	+/+	ENSP00000309439	HOXB9	q10	q10	517	16	32852655	32856017	-1	2	100%	98.8%	750	0.53 / 0.01 = 53	ortholog_one2one: HOXB9	1
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q11	+/+	ENSP00000290295	HOXB13	q11	q11	606	16	32951569	32953359	-1	2	100%	95%	909	0.58 / 0.01 = 58	ortholog_one2one: HOXB13	1
p13	q12	+/+	ENSP00000302547	TTLL6	q12	q12	909	16	32995240	33016834	-1	6	86.6%	86.8%	1521	0.78 / 0.2 = 3.9	ortholog_one2one: Q24KA4_MACMU	1
p14	q13	+/+	ENSP00000365871	Q658K6_HUMAN	q13	q13	270	16	33028950	33029720	-1	2	95.7%	75.7%	525	1 / 0.15 = 6.67	ortholog_one2one: Q658K6_HUMAN	1

region 3 (region 1 for Cfam)

syntenyRegion: Canis_familiaris.glob01.9.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 9 -i 28119456:28360233 -f 18e4 some_geneID_to_be_selected
scoreRatio_sum=202.05 log_scoreRatio_sum=26.34 focal_scoreRatio_sum=94.75
AlnScore=10240 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Canis_familiaris

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	563	9	28119786	28121196	-1	2	100%	83%	987	0.67 / 0.11 = 6.09	ortholog_one2one: 491052	1
p2	q2	+/+	ENSP00000331741	HOXB2	q2	q2	515	9	28131323	28133190	-1	2	100%	73.9%	1071	0.55 / 0.26 = 2.12	ortholog_one2one: HOXB2	1
p3	q3	+/+	ENSP00000308252	HOXB3	q3	q3	755	9	28138727	28140950	-1	2	93.5%	89.3%	1209	0.5 / 0.1 = 5	noComparaHits: ENSCAFG00000016845	1
p4	q4	+/+	ENSP00000328928	HOXB4	q4	q4	475	9	28165646	28167383	-1	3	88%	97.3%	672	0.43 / 0.05 = 8.6	ortholog_one2one: HOXB4	1
p5	q5	+/+	ENSP00000239151	HOXB5	q5	q5	546	9	28181544	28183107	-1	2	100%	99.6%	807	0.4 / 0.01 = 40	ortholog_one2one: 491056	1
p6	q6	+/+	ENSP00000225648	HOXB6	q6	q6	464	9	28185792	28187509	-1	2	100%	97.3%	672	0.47 / 0.02 = 23.5	ortholog_one2one: 491056	1
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	q7	+/+	ENSP00000239165	HOXB7	q7	q7	423	9	28197371	28200188	-1	2	96.8%	93.1%	651	0.42 / 0.03 = 14	ortholog_one2one: 608962	1
p9	q8	+/+	ENSP00000239144	HOXB8	q8	q8	512	9	28202523	28204191	-1	2	100%	96.5%	765	0.41 / 0.01 = 41	ortholog_one2one: 491059	1
p10	q9	+/+	ENSP00000309439	HOXB9	q9	q9	518	9	28212641	28216111	-1	2	100%	98.8%	750	0.53 / 0.01 = 53	ortholog_one2one: 608958	1
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q10	+/+	ENSP00000290295	HOXB13	q10	q10	533	9	28285962	28287966	-1	2	98.2%	88.7%	852	0.58 / 0.12 = 4.83	ortholog_one2one: 491060	1
p13	q11	+/+	ENSP00000302547	TTLL6	q11	q11	779.3	9	28326304	28348175	-1	7	97.9%	68.6%	1758	0.78 / 0.32 = 2.44	ortholog_one2one: TTLL6	1
p14	q12	+/+	ENSP00000365871	Q658K6_HUMAN	q12	q12	100	9	28360009	28360233	-1	1	40.5%	66.7%	225	1 / 0.68 = 1.47	noComparaHits: TTLL6	1

region 4 (region 1 for Mmus)

syntenyRegion: Mus_musculus.glob01.11.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Mus_musculus -l 11 -i 95949846:96183226 -f 18e4 some_geneID_to_be_selected
scoreRatio_sum=187.2 log_scoreRatio_sum=24.67 focal_scoreRatio_sum=51.52
AlnScore=9660 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Mus_musculus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	537	11	96181917	96183226	1	2	100%	84.6%	906	0.67 / 0.15 = 4.47	ortholog_one2one: Hoxb1	1
p2	q2	+/+	ENSP00000331741	HOXB2	q2	q2	550	11	96167901	96169716	1	2	100%	78.2%	1077	0.55 / 0.21 = 2.62	ortholog_one2one: HXB2_MOUSE	1
p3	q3	+/+	ENSP00000308252	HOXB3	q3	q3	823	11	96160339	96162486	1	2	93.5%	95.8%	1206	0.5 / 0.02 = 25	ortholog_one2one: Hoxb3	1
p4	q4	+/+	ENSP00000328928	HOXB4	q4	q4	466	11	96134860	96136415	1	2	100%	87.8%	759	0.43 / 0.06 = 7.17	ortholog_one2one: Hoxb4	1
p5	q5	+/+	ENSP00000239151	HOXB5	q5	q5	541	11	96119704	96121224	1	2	100%	98.9%	807	0.4 / 0.01 = 40	ortholog_one2one: Hoxb5	1
p6	q6	+/+	ENSP00000225648	HOXB6	q6	q6	468	11	96115267	96117015	1	2	100%	97.8%	672	0.47 / 0.01 = 47	ortholog_one2one: Hoxb6	1
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	q7	+/+	ENSP00000239165	HOXB7	q7	q7	409	11	96102818	96105681	1	2	94.5%	94.2%	618	0.42 / 0.07 = 6	ortholog_one2one: Hoxb7	1
p9	q8	+/+	ENSP00000239144	HOXB8	q8	q8	507	11	96099053	96100557	1	2	100%	98.4%	729	0.41 / 0.01 = 41	ortholog_one2one: Hoxb8	1
p10	q9	+/+	ENSP00000309439	HOXB9	q9	q9	468	11	96087632	96090946	1	2	100%	81.9%	843	0.53 / 0.1 = 5.3	ortholog_one2one: Hoxb9	1
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q10	+/+	ENSP00000290295	HOXB13	q10	q10	560	11	96010533	96012316	1	2	100%	93%	858	0.58 / 0.08 = 7.25	ortholog_one2one: Hoxb13	1
p13	q11	+/+	ENSP00000302547	TTLL6	q11	q11	495.7	11	95961474	95972886	1	5	70.1%	60.1%	1218	0.78 / 0.56 = 1.39	ortholog_one2one: Ttll6	1
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 5 (region 1 for Mdom)

syntenyRegion: Monodelphis_domestica.glob01.2.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Monodelphis_domestica -l 2 -i 201105049:201431522 -f 24e4 some_geneID_to_be_selected
scoreRatio_sum=34.83 log_scoreRatio_sum=10.78 focal_scoreRatio_sum=12.35
AlnScore=7560 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Monodelphis_domestica

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	466	2	201105049	201106545	-1	2	100%	72.6%	930	0.67 / 0.27 = 2.48	ortholog_one2one: HOXB1	1
p2	q2	+/+	ENSP00000331741	HOXB2	q2	q2	520	2	201116099	201118103	-1	2	99.4%	73.5%	1122	0.55 / 0.25 = 2.2	ortholog_one2one: HOXB2	1
p3	q3	+/+	ENSP00000308252	HOXB3	q3	q3	765	2	201123983	201126209	-1	2	100%	85%	1293	0.5 / 0.09 = 5.56	ortholog_one2one: HOXB3	1
---	q4	gapp	-	-	-	q4	-	-	-	-	-	-	-	-	-	-	-	-
p4	q5	+/+	ENSP00000328928	HOXB4	q5	q5	259	2	201154627	201155052	-1	1	60.6%	80.3%	426	0.43 / 0.48 = 0.9	ortholog_one2one: HOXB4	1
p5	q6	+/+	ENSP00000239151	HOXB5	q6	q6	491	2	201170725	201172260	-1	2	100%	90%	801	0.4 / 0.1 = 4	ortholog_one2one: HOXB5	1
p6	q7	+/+	ENSP00000225648	HOXB6	q7	q7	415	2	201175565	201177388	-1	2	100%	86.6%	669	0.47 / 0.12 = 3.92	ortholog_one2one: HOXB6	1
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	q8	+/+	ENSP00000239165	HOXB7	q8	q8	381	2	201188149	201191355	-1	2	98.6%	82.4%	663	0.42 / 0.13 = 3.23	ortholog_one2one: HOXB7	1
p9	---	gapq	ENSP00000239144	HOXB8	q7,q8	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q9	+/+	ENSP00000309439	HOXB9	q9	q9	474	2	201204822	201208661	-1	2	100%	90.4%	744	0.53 / 0.08 = 6.63	ortholog_one2one: HOXB9	1
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q10	+/+	ENSP00000290295	HOXB13	q10	q10	531	2	201363757	201365724	-1	2	100%	81.8%	906	0.58 / 0.12 = 4.83	ortholog_one2one: HOXB13	1
p13	q11	+/+	ENSP00000302547	TTLL6	q11	q11	311	2	201427539	201431522	-1	3	34.8%	68.2%	642	0.78 / 0.72 = 1.08	ortholog_one2one: TTLL6	1
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 6 (region 1 for Btau)

syntenyRegion: Bos_taurus.glob02.19.minQN4.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Bos_taurus -l 19 -i 30587771:30608457 -f 16e3 some_geneID_to_be_selected
scoreRatio_sum=11.72 log_scoreRatio_sum=4.02 focal_scoreRatio_sum=1.29
AlnScore=2532 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Bos_taurus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	550	19	30587810	30589166	-1	2	100%	87%	921	0.67 / 0.13 = 5.15	ortholog_one2one: HOXB1	1
p2	q2	+/+	ENSP00000331741	HOXB2	q2	q2	580	19	30598846	30600675	-1	2	100%	83.3%	1068	0.55 / 0.17 = 3.24	ortholog_one2one: HOXB2	1
p3	q3	+/+	ENSP00000308252	HOXB3	q3	q3	712	19	30606318	30608457	-1	2	80%	96.2%	1035	0.5 / 0.15 = 3.33	ortholog_one2one: HOXB3	1
p4	---	gape	ENSP00000328928	HOXB4	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000239151	HOXB5	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000225648	HOXB6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000239165	HOXB7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000309439	HOXB9	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 7 (region 1 for Drer)

syntenyRegion: Danio_rerio.glob01.3.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 3 -i 22929828:23046057 -f 87e3 some_geneID_to_be_selected
scoreRatio_sum=13.86 log_scoreRatio_sum=2.8 focal_scoreRatio_sum=4.66
AlnScore=5955 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	244	3	22929837	22931513	-1	2	98.3%	48.1%	936	0.67 / 0.61 = 1.1	noComparaHits: hoxb1a	1
p2	q2	+/+	ENSP00000331741	HOXB2	q2	q2	356	3	22946170	22948177	-1	2	96.1%	57%	1125	0.55 / 0.49 = 1.12	ortholog_one2one: hoxb2a	1
p3	q3	+/+	ENSP00000308252	HOXB3	q3	q3	576	3	22952393	22954315	-1	2	94.9%	68.4%	1242	0.5 / 0.31 = 1.61	ortholog_one2one: hoxb3a	1
p4	q4	+/+	ENSP00000328928	HOXB4	q4	q4	314	3	22976965	22978642	-1	2	100%	61.8%	744	0.43 / 0.37 = 1.16	ortholog_one2one: hoxb4a	1
p5	q5	+/+	ENSP00000239151	HOXB5	q5	q5	406	3	22991224	22992663	-1	2	100%	73.8%	858	0.4 / 0.25 = 1.6	ortholog_one2one: hoxb5a	1
p6	q6	+/+	ENSP00000225648	HOXB6	q6	q6	318	3	22995009	22996746	-1	2	100%	69.3%	687	0.47 / 0.33 = 1.42	ortholog_one2many: hoxb6a	1
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	q7	+/+	ENSP00000239165	HOXB7	q7	q7	139	3	23004698	23004952	-1	1	39.2%	75.3%	255	0.42 / 0.68 = 0.62	ortholog_one2many: hoxb7a	1
---	q8	gapp	-	-	-	q8	-	-	-	-	-	-	-	-	-	-	-	-
p9	q9	+/+	ENSP00000239144	HOXB8	q9	q9	408	3	23010684	23012162	-1	2	99.2%	78.9%	723	0.41 / 0.2 = 2.05	ortholog_one2many: hoxb8a	1
p10	q10	+/+	ENSP00000309439	HOXB9	q10	q10	366	3	23019694	23022949	-1	2	100%	72.7%	759	0.53 / 0.29 = 1.83	ortholog_one2many: hoxb9a	1
---	q11	gapp	-	-	-	q11	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q12	+/+	ENSP00000290295	HOXB13	q12	q12	344	3	23044786	23046057	-1	2	94.7%	63.2%	828	0.58 / 0.43 = 1.35	between_species_paralog: hoxb13a	1
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 8 (region 1 for Ggal)

syntenyRegion: Gallus_gallus.glob01.27.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 27 -i 3253442:3641490 -f 29e4 some_geneID_to_be_selected
scoreRatio_sum=11.93 log_scoreRatio_sum=2.52 focal_scoreRatio_sum=5.74
AlnScore=3940 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gallus_gallus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	165	27	3640987	3641313	1	1	36.5%	80.2%	327	0.67 / 0.74 = 0.91	ortholog_one2one: HXB1_CHICK	1
---	q2	gapp	-	-	-	q2	-	-	-	-	-	-	-	-	-	-	-	-
p2	q3	+/+	ENSP00000331741	HOXB2	q3	q3	210	27	3625326	3625943	1	1	67.7%	53.3%	618	0.55 / 0.7 = 0.79	noComparaHits: HXB8_CHICK	1
p3	q4	+/+	ENSP00000308252	HOXB3	q4	q4	590	27	3615199	3617444	1	2	93.5%	71.7%	1185	0.5 / 0.29 = 1.72	ortholog_one2one: HXB3_CHICK	1
p4	---	gapq	ENSP00000328928	HOXB4	q5	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	q5	+/+	ENSP00000239151	HOXB5	q5	q5	281	27	3584442	3586617	1	2	57.6%	81.1%	492	0.4 / 0.48 = 0.83	ortholog_one2one: HXB5_CHICK	1
p6	---	gapq	ENSP00000225648	HOXB6	q5	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q5	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q6	+/+	ENSP00000239144	HOXB8	q6	q6	452	27	3578995	3580487	1	2	94.2%	90%	717	0.41 / 0.12 = 3.42	ortholog_one2one: HXB8_CHICK	1
p10	q7	+/+	ENSP00000309439	HOXB9	q7	q7	429	27	3563906	3568219	1	2	100%	81.2%	741	0.53 / 0.17 = 3.12	ortholog_one2one: HOXB9	1
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q8	+/+	ENSP00000290295	HOXB13	q8	q8	297	27	3518760	3521213	1	2	94.4%	53.2%	909	0.58 / 0.51 = 1.14	ortholog_one2one: HOXB13	1
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 9 (region 1 for Xtro)

syntenyRegion: Xenopus_tropicalis.glob01.scaffold_334.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Xenopus_tropicalis -l scaffold_334 -i 486967:589462 -f 77e3 some_geneID_to_be_selected
scoreRatio_sum=12.59 log_scoreRatio_sum=2.2 focal_scoreRatio_sum=4.21
AlnScore=5242 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Xenopus_tropicalis

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	273	scaffold_334	486967	489038	-1	2	99.3%	51.9%	933	0.67 / 0.57 = 1.18	noComparaHits: ENSXETG00000021964	1
p2	q2	+/+	ENSP00000331741	HOXB2	q2	q2	352	scaffold_334	505842	508165	-1	2	99.4%	57.3%	1014	0.55 / 0.49 = 1.12	noComparaHits: ENSXETG00000027353	1
p3	q3	+/+	ENSP00000308252	HOXB3	q3	q3	506	scaffold_334	512901	514755	-1	2	93.3%	64.7%	1137	0.5 / 0.39 = 1.28	ortholog_one2one: hoxb3	1
p4	q4	+/+	ENSP00000328928	HOXB4	q4	q4	268	scaffold_334	533018	534165	-1	2	96.8%	58.4%	678	0.43 / 0.46 = 0.93	ortholog_one2one: hoxb4	2
p5	q5	+/+	ENSP00000239151	HOXB5	q5	q5	363	scaffold_334	546778	548144	-1	2	100%	71%	774	0.4 / 0.33 = 1.21	ortholog_one2one: HOXB5	1
p6	q6	+/+	ENSP00000225648	HOXB6	q6	q6	344	scaffold_334	550361	552753	-1	2	100%	73.7%	669	0.47 / 0.27 = 1.74	noComparaHits: ENSXETG00000021987	1
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	q7	+/+	ENSP00000239165	HOXB7	q7	q7	153	scaffold_334	560611	560865	-1	1	39.2%	82.4%	255	0.42 / 0.65 = 0.65	noComparaHits: ENSXETG00000027351	2
p9	q8	+/+	ENSP00000239144	HOXB8	q8	q8	447	scaffold_334	572876	573865	-1	2	99.6%	82.9%	768	0.41 / 0.13 = 3.15	noComparaHits: ENSXETG00000021993	1
---	q9	gapp	-	-	-	q9	-	-	-	-	-	-	-	-	-	-	-	-
p10	q10	+/+	ENSP00000309439	HOXB9	q10	q10	308	scaffold_334	584781	589462	-1	2	98.8%	64.4%	705	0.53 / 0.4 = 1.33	ortholog_one2one: HOXB9	1
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 10 (region 2 for Btau)

syntenyRegion: Bos_taurus.glob01.19.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Bos_taurus -l 19 -i 31195622:31423477 -f 17e4 some_geneID_to_be_selected
scoreRatio_sum=9.37 log_scoreRatio_sum=1.39 focal_scoreRatio_sum=3.53
AlnScore=4007 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Bos_taurus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000308252	HOXB3	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	q1	+/+	ENSP00000328928	HOXB4	q1	q1	207	19	31195622	31195927	-1	1	40.6%	96.1%	306	0.43 / 0.58 = 0.74	noComparaHits: HOXB5	3
p5	q2	+/+	ENSP00000239151	HOXB5	q2	q2	375	19	31211892	31212452	-1	1	69.5%	99.5%	561	0.4 / 0.31 = 1.29	ortholog_one2one: HOXB5	1
p6	q3	+/+	ENSP00000225648	HOXB6	q3	q3	297	19	31215456	31215872	-1	1	62.1%	97.8%	417	0.47 / 0.37 = 1.27	noComparaHits: HOXB5	1
---	q4	gapp	-	-	-	q4	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	q5	+/+	ENSP00000239165	HOXB7	q5	q5	271	19	31227309	31227812	-1	1	74.7%	82.7%	504	0.42 / 0.38 = 1.11	ortholog_one2one: HXB7_BOVIN	1
p9	q6	+/+	ENSP00000239144	HOXB8	q6	q6	214	19	31230130	31230462	-1	1	47.7%	93.1%	333	0.41 / 0.58 = 0.71	noComparaHits:	3
p10	q7	+/+	ENSP00000309439	HOXB9	q7	q7	340	19	31239435	31242559	-1	2	65.2%	99.4%	489	0.53 / 0.34 = 1.56	ortholog_one2one: HOXB9	1
---	q8	gapp	-	-	-	q8	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000290295	HOXB13	q10	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	q9	/+	ENSP00000302547	TTLL6	q9	q9	808	19	31368492	31387598	1	7	98.1%	68.3%	1824	0.78 / 0.29 = 2.69	ortholog_one2one: TTLL6	1
p14	---	gapq	ENSP00000365871	Q658K6_HUMAN	q8	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q10	gape	-	-	-	q10	-	-	-	-	-	-	-	-	-	-	-	-

region 11 (region 2 for Drer)

syntenyRegion: Danio_rerio.glob09.24.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 24 -i 25215421:25218683 -f 24e2 some_geneID_to_be_selected
scoreRatio_sum=1.83 log_scoreRatio_sum=0.6 focal_scoreRatio_sum=1.83
AlnScore=703 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000308252	HOXB3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000328928	HOXB4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000239151	HOXB5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000225648	HOXB6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000239165	HOXB7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q1	+/+	ENSP00000309439	HOXB9	q1	q1	366	24	25215421	25218683	1	2	100%	72.7%	759	0.53 / 0.29 = 1.83	ortholog_one2many: hoxb9a	1
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 12 (region 3 for Drer)

syntenyRegion: Danio_rerio.glob03.12.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 12 -i 34124418:34685287 -f 42e4 some_geneID_to_be_selected
scoreRatio_sum=5.59 log_scoreRatio_sum=0.54 focal_scoreRatio_sum=1.36
AlnScore=2440 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
---	q1	gaps	-	-	-	q1	-	-	-	-	-	-	-	-	-	-	-	-
---	q2	gaps	-	-	-	q2	-	-	-	-	-	-	-	-	-	-	-	-
---	q3	gaps	-	-	-	q3	-	-	-	-	-	-	-	-	-	-	-	-
---	q4	gaps	-	-	-	q4	-	-	-	-	-	-	-	-	-	-	-	-
---	q5	gaps	-	-	-	q5	-	-	-	-	-	-	-	-	-	-	-	-
p1	q6	+/+	ENSP00000355140	HOXB1	q5	q6	201.1	12	34648802	34649802	-1	2	98.3%	40.7%	924	0.67 / 0.68 = 0.99	noComparaHits: ENSDARG00000054033	3
p2	---	gapq	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gapq	ENSP00000308252	HOXB3	q4,q7	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gapq	ENSP00000328928	HOXB4	q4,q7	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	q7	+/+	ENSP00000239151	HOXB5	q4,q7	q7	377	12	34660335	34661610	-1	2	99.6%	69.5%	825	0.4 / 0.31 = 1.29	ortholog_one2many: hoxb5b	2
p6	q8	+/+	ENSP00000225648	HOXB6	q3	q8	277	12	34663033	34664134	-1	2	98.2%	62.2%	666	0.47 / 0.41 = 1.15	ortholog_one2many: hoxb6b	3
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q3,q8	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q9	+/+	ENSP00000239144	HOXB8	q2,q9	q9	321	12	34671602	34673873	-1	2	93%	66.4%	714	0.41 / 0.37 = 1.11	ortholog_one2many: hoxb8b	2
p10	---	gapq	ENSP00000309439	HOXB9	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	q10	+/+	ENSP00000302547	TTLL6	q1,q10	q10	289.4	12	34681388	34685287	-1	3	40.9%	52.4%	858	0.78 / 0.74 = 1.05	ortholog_one2many: 564075	1
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 13 (region 1 for Trub)

syntenyRegion: Takifugu_rubripes.glob15.scaffold_3110.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_3110 -i 2165:3853 -f 13e2 some_geneID_to_be_selected
scoreRatio_sum=1.14 log_scoreRatio_sum=0.13 focal_scoreRatio_sum=0.38
AlnScore=481 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Takifugu_rubripes

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000308252	HOXB3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000328928	HOXB4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000239151	HOXB5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000225648	HOXB6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000239165	HOXB7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000309439	HOXB9	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000290295	HOXB13	q1	q1	293	scaffold_3110	2165	3814	1	2	93.3%	56.4%	861	0.58 / 0.51 = 1.14	ortholog_one2many: NEWSINFRUG00000160125	2
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 14 (region 1 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob16.contig_9873.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_9873 -i 2007:4245 -f 17e2 some_geneID_to_be_selected
scoreRatio_sum=1.05 log_scoreRatio_sum=0.05 focal_scoreRatio_sum=0.15
AlnScore=586 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000308252	HOXB3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	q1	+/+	ENSP00000328928	HOXB4	q1	q1	294	contig_9873	2007	4245	-1	2	92%	62.3%	732	0.43 / 0.41 = 1.05	noComparaHits: ENSGACG00000005628	1
p5	---	gape	ENSP00000239151	HOXB5	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000225648	HOXB6	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000239165	HOXB7	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000309439	HOXB9	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 15 (region 2 for Trub)

syntenyRegion: Takifugu_rubripes.glob08.scaffold_3809.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_3809 -i 3209:5738 -f 19e2 some_geneID_to_be_selected
scoreRatio_sum=1.04 log_scoreRatio_sum=0.04 focal_scoreRatio_sum=0.21
AlnScore=547 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Takifugu_rubripes

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000308252	HOXB3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000328928	HOXB4	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000239151	HOXB5	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	q1	+/+	ENSP00000225648	HOXB6	q1	q1	261	scaffold_3809	3209	5738	1	2	100%	55.4%	825	0.47 / 0.45 = 1.04	ortholog_one2many: NEWSINFRUG00000159821	2
p7	---	gape	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000239165	HOXB7	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000239144	HOXB8	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000309439	HOXB9	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 16 (region 2 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob06.contig_9872.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_9872 -i 61560:92599 -f 23e3 some_geneID_to_be_selected
scoreRatio_sum=3.05 log_scoreRatio_sum=0.03 focal_scoreRatio_sum=0.35
AlnScore=1232 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	134	contig_9872	61560	61895	-1	1	36.2%	67.3%	336	0.67 / 0.79 = 0.85	noComparaHits: ENSGACG00000005635	3
p2	q2	+/+	ENSP00000331741	HOXB2	q2	q2	323	contig_9872	79266	81838	-1	2	97.5%	47.8%	1275	0.55 / 0.53 = 1.04	noComparaHits: ENSGACG00000005633	1
p3	q3	+/+	ENSP00000308252	HOXB3	q3	q3	474.1	contig_9872	88587	92599	-1	3	97%	58.7%	1350	0.5 / 0.43 = 1.16	noComparaHits: ENSGACG00000005631	1
p4	---	gape	ENSP00000328928	HOXB4	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000239151	HOXB5	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000225648	HOXB6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000239165	HOXB7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000309439	HOXB9	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 17 (region 4 for Drer)

syntenyRegion: Danio_rerio.glob10.2.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 2 -i 12067392:12107179 -f 30e3 some_geneID_to_be_selected
scoreRatio_sum=1.02 log_scoreRatio_sum=0.02 focal_scoreRatio_sum=1.02
AlnScore=471 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000308252	HOXB3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000328928	HOXB4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000239151	HOXB5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000225648	HOXB6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000239165	HOXB7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q1	+/+	ENSP00000309439	HOXB9	q1	q1	245	2	12067419	12068514	-1	2	100%	45.3%	852	0.53 / 0.52 = 1.02	between_species_paralog: hoxd9a	2
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 18 (region 2 for Ggal)

syntenyRegion: Gallus_gallus.glob07.Un_random.minQN4.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l Un_random -i 20045135:20048409 -f 25e2 some_geneID_to_be_selected
scoreRatio_sum=0.98 log_scoreRatio_sum=-0.01 focal_scoreRatio_sum=0.98
AlnScore=454 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gallus_gallus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000308252	HOXB3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000328928	HOXB4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000239151	HOXB5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000225648	HOXB6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000239165	HOXB7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q1	+/+	ENSP00000309439	HOXB9	q1	q1	236.2	Un_random	20045138	20048409	-1	2	98.8%	51.5%	741	0.53 / 0.54 = 0.98	between_species_paralog: HXD9_CHICK	3
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 19 (region 3 for Ggal)

syntenyRegion: Gallus_gallus.glob13.Un_random.minQN4.fac2.06.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l Un_random -i 4242275:4245456 -f 24e2 some_geneID_to_be_selected
scoreRatio_sum=0.97 log_scoreRatio_sum=-0.02 focal_scoreRatio_sum=0.32
AlnScore=394 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gallus_gallus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000308252	HOXB3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000328928	HOXB4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000239151	HOXB5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000225648	HOXB6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000239165	HOXB7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000309439	HOXB9	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000290295	HOXB13	q1	q1	240	Un_random	4242275	4245456	1	2	66.9%	57.6%	603	0.58 / 0.6 = 0.97	between_species_paralog: HOXC13	2
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 20 (region 5 for Drer)

syntenyRegion: Danio_rerio.glob07.16.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 16 -i 21167797:21201570 -f 25e3 some_geneID_to_be_selected
scoreRatio_sum=2.94 log_scoreRatio_sum=-0.06 focal_scoreRatio_sum=1.37
AlnScore=1270 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000331741	HOXB2	q1	q1	289	16	21199897	21201570	1	2	96.1%	48.8%	1041	0.55 / 0.58 = 0.95	between_species_paralog: hoxa2b	2
p3	---	gapq	ENSP00000308252	HOXB3	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gapq	ENSP00000328928	HOXB4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gapq	ENSP00000239151	HOXB5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000225648	HOXB6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q2	+/+	ENSP00000309439	HOXB9	q2	q2	212.5	16	21188212	21189738	1	2	100%	48.6%	735	0.53 / 0.59 = 0.9	between_species_paralog: hoxa9b	4
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q3	+/+	ENSP00000290295	HOXB13	q3	q3	284	16	21167797	21168969	1	2	91.5%	54.4%	762	0.58 / 0.53 = 1.09	between_species_paralog: hoxa13b	2
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 21 (region 6 for Drer)

syntenyRegion: Danio_rerio.glob16.6.minQN4.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 6 -i 37029826:37032291 -f 18e2 some_geneID_to_be_selected
scoreRatio_sum=0.92 log_scoreRatio_sum=-0.07 focal_scoreRatio_sum=0.31
AlnScore=362 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000308252	HOXB3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000328928	HOXB4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000239151	HOXB5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000225648	HOXB6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000239165	HOXB7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gaps	ENSP00000309439	HOXB9	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gaps	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q1	+/+	ENSP00000290295	HOXB13	q1	q1	221	6	37029826	37032291	-1	2	93.7%	45.7%	798	0.58 / 0.63 = 0.92	between_species_paralog: hoxc13b	5
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 22 (region 4 for Ggal)

syntenyRegion: Gallus_gallus.glob04.Un_random.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l Un_random -i 27778821:27810035 -f 23e3 some_geneID_to_be_selected
scoreRatio_sum=2.01 log_scoreRatio_sum=-0.08 focal_scoreRatio_sum=1.14
AlnScore=823 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gallus_gallus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000308252	HOXB3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000328928	HOXB4	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000239151	HOXB5	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000225648	HOXB6	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	q1	/+	ENSP00000239165	HOXB7	q1	q1	299	Un_random	27806968	27810035	-1	2	88%	75.4%	570	0.42 / 0.32 = 1.31	ortholog_one2one: HOXB7	1
p9	---	gapq	ENSP00000239144	HOXB8	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q2	/+	ENSP00000309439	HOXB9	q2	q2	124	Un_random	27778827	27779045	-1	1	29.2%	75.3%	219	0.53 / 0.76 = 0.7	noComparaHits: 430550	4
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 23 (region 1 for Tnig)

syntenyRegion: Tetraodon_nigroviridis.glob01.Un_random.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l Un_random -i 38028407:38178153 -f 11e4 some_geneID_to_be_selected
scoreRatio_sum=9.05 log_scoreRatio_sum=-0.11 focal_scoreRatio_sum=2.9
AlnScore=4290 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Tetraodon_nigroviridis

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	124	Un_random	38028407	38028751	-1	1	35.9%	62.6%	345	0.67 / 0.8 = 0.84	noComparaHits: GSTENG00005035001 ; HOXB1	2
p2	q2	+/+	ENSP00000331741	HOXB2	q2	q2	325	Un_random	38041366	38043918	-1	2	97.5%	50%	1212	0.55 / 0.53 = 1.04	ortholog_one2many: HOXBa2 ; GSTENG00020451001	1
p3	q3	+/+	ENSP00000308252	HOXB3	q3	q3	471.6	Un_random	38049854	38053272	-1	3	97.7%	56.7%	1458	0.5 / 0.43 = 1.16	between_species_paralog: HOXB3	1
p4	q4	+/+	ENSP00000328928	HOXB4	q4	q4	303	Un_random	38083032	38085184	-1	2	92%	65.1%	705	0.43 / 0.39 = 1.1	ortholog_one2one: HOXB4	1
p5	q5	+/+	ENSP00000239151	HOXB5	q5	q5	316	Un_random	38101271	38103594	-1	2	100%	58%	951	0.4 / 0.42 = 0.95	ortholog_one2many: HOXB5 ; GSTENG00020455001	2
p6	q6	+/+	ENSP00000225648	HOXB6	q6	q6	169	Un_random	38107367	38109897	-1	2	50.4%	70.8%	387	0.47 / 0.64 = 0.73	noComparaHits: GSTENG00020456001	2
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q5	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q7	+/+	ENSP00000239144	HOXB8	q7	q7	236	Un_random	38129985	38130416	-1	1	58%	77.8%	432	0.41 / 0.54 = 0.76	ortholog_one2one: HOXB8	2
p10	q8	+/+	ENSP00000309439	HOXB9	q8	q8	312	Un_random	38140058	38146583	-1	2	99.6%	62.4%	834	0.53 / 0.4 = 1.33	noComparaHits: GSTENG00020456001	1
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q9	+/+	ENSP00000290295	HOXB13	q9	q9	296	Un_random	38176501	38178153	-1	2	94.4%	56.2%	870	0.58 / 0.51 = 1.14	ortholog_one2many: GSTENG00020457001 ; HOXB13	1
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 24 (region 2 for Hsap)

syntenyRegion: Homo_sapiens.glob02.7.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 7 -i 27100587:27251451 -f 11e4 some_geneID_to_be_selected
scoreRatio_sum=8.86 log_scoreRatio_sum=-0.14 focal_scoreRatio_sum=2.45
AlnScore=4318 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Homo_sapiens

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	210.3	7	27100608	27102056	-1	2	100%	42.3%	987	0.67 / 0.67 = 1	noComparaHits: HOXA1	2
p2	q2	+/+	ENSP00000331741	HOXB2	q2	q2	311	7	27106885	27108644	-1	2	94.1%	52.2%	1059	0.55 / 0.55 = 1	within_species_paralog: HOXA2	2
p3	q3	+/+	ENSP00000308252	HOXB3	q3	q3	418	7	27114062	27116784	-1	2	100%	49.6%	1443	0.5 / 0.5 = 1	within_species_paralog: HOXA3	2
p4	q4	+/+	ENSP00000328928	HOXB4	q4	q4	264.4	7	27135444	27136877	-1	2	96.8%	47.9%	915	0.43 / 0.47 = 0.91	within_species_paralog: HOXA4	3
p5	q5	+/+	ENSP00000239151	HOXB5	q5	q5	325	7	27147982	27149751	-1	2	100%	60.3%	816	0.4 / 0.4 = 1	within_species_paralog: HOXA5	2
p6	q6	+/+	ENSP00000225648	HOXB6	q6	q6	249	7	27151805	27153893	-1	2	100%	53.5%	756	0.47 / 0.47 = 1	within_species_paralog: HOXA6	2
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	q7	+/+	ENSP00000239165	HOXB7	q7	q7	253	7	27161074	27162689	-1	2	100%	57.4%	678	0.42 / 0.42 = 1	within_species_paralog: HOXA7	2
p9	---	gapq	ENSP00000239144	HOXB8	q7	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q8	+/+	ENSP00000309439	HOXB9	q8	q8	228.6	7	27169753	27171601	-1	2	93.2%	48.4%	750	0.53 / 0.56 = 0.95	within_species_paralog: HOXA9	4
---	q9	gapp	-	-	-	q9	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q10	+/+	ENSP00000290295	HOXB13	q10	q10	250	7	27204345	27205792	-1	2	77.8%	55.9%	714	0.58 / 0.58 = 1	within_species_paralog: HOXA13	2
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 25 (region 3 for Btau)

syntenyRegion: Bos_taurus.glob06.4.minQN4.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Bos_taurus -l 4 -i 40097990:40179412 -f 61e3 some_geneID_to_be_selected
scoreRatio_sum=1.84 log_scoreRatio_sum=-0.16 focal_scoreRatio_sum=1.25
AlnScore=760 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Bos_taurus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000308252	HOXB3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000328928	HOXB4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000239151	HOXB5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000225648	HOXB6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000239165	HOXB7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q1	+/+	ENSP00000309439	HOXB9	q1	q1	229.6	4	40177480	40179373	1	2	94.8%	49.2%	762	0.53 / 0.55 = 0.96	between_species_paralog: HOXA9	4
---	q2	gapp	-	-	-	q2	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q3	+/+	ENSP00000290295	HOXB13	q3	q3	202	4	40142887	40144079	1	2	51.4%	64.2%	453	0.58 / 0.66 = 0.88	between_species_paralog: HOXA13	3
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 26 (region 3 for Trub)

syntenyRegion: Takifugu_rubripes.glob03.scaffold_130.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_130 -i 619602:642315 -f 17e3 some_geneID_to_be_selected
scoreRatio_sum=4.97 log_scoreRatio_sum=-0.17 focal_scoreRatio_sum=0.87
AlnScore=1921 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Takifugu_rubripes

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	195.4	scaffold_130	641213	642255	1	2	87.4%	45.6%	816	0.67 / 0.69 = 0.97	noComparaHits: NEWSINFRUG00000166087 ; NEWSINFRUG00000131120	1
p2	---	gapq	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q2	+/+	ENSP00000308252	HOXB3	q2	q2	125	scaffold_130	639540	639887	1	1	26.5%	55.8%	348	0.5 / 0.85 = 0.59	noComparaHits: NEWSINFRUG00000161068	4
p4	---	gapq	ENSP00000328928	HOXB4	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	q3	+/+	ENSP00000239151	HOXB5	q3	q3	351	scaffold_130	630265	631534	1	2	99.3%	66.1%	834	0.4 / 0.35 = 1.14	ortholog_one2many: NEWSINFRUG00000132774	1
p6	q4	+/+	ENSP00000225648	HOXB6	q4	q4	292	scaffold_130	627432	629055	1	2	99.1%	62.2%	696	0.47 / 0.38 = 1.24	ortholog_one2many: NEWSINFRUG00000156875	1
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q4	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000239144	HOXB8	q4	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gapq	ENSP00000309439	HOXB9	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	q5	+/+	ENSP00000302547	TTLL6	q5	q5	267.4	scaffold_130	619602	620451	1	3	34.8%	62.1%	609	0.78 / 0.76 = 1.03	ortholog_one2one: NEWSINFRUG00000132771	1
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 27 (region 1 for Olat)

syntenyRegion: Oryzias_latipes.glob03.19.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Oryzias_latipes -l 19 -i 17578415:17604302 -f 19e3 some_geneID_to_be_selected
scoreRatio_sum=4.92 log_scoreRatio_sum=-0.2 focal_scoreRatio_sum=0.86
AlnScore=1925 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Oryzias_latipes

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	179.9	19	17578478	17579423	-1	2	86%	41.9%	762	0.67 / 0.71 = 0.94	noComparaHits: Q3V613_ORYLA	1
p2	---	gapq	ENSP00000331741	HOXB2	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q2	+/+	ENSP00000308252	HOXB3	q2	q2	144	19	17580572	17581048	-1	1	39.7%	50.6%	477	0.5 / 0.82 = 0.61	noComparaHits: Q3V612_ORYLA	4
p4	---	gapq	ENSP00000328928	HOXB4	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	q3	+/+	ENSP00000239151	HOXB5	q3	q3	348	19	17590222	17591540	-1	2	99.3%	64.6%	837	0.4 / 0.36 = 1.11	ortholog_one2many: Q3V611_ORYLA	1
p6	q4	+/+	ENSP00000225648	HOXB6	q4	q4	288	19	17592684	17594165	-1	2	99.1%	60.4%	702	0.47 / 0.39 = 1.21	ortholog_one2many: Q9PVR5_ORYLA	1
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q4	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000239144	HOXB8	q4	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gapq	ENSP00000309439	HOXB9	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	q5	+/+	ENSP00000302547	TTLL6	q5	q5	288.8	19	17602729	17604302	-1	3	35.3%	60.9%	660	0.78 / 0.74 = 1.05	noComparaHits:	1
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 28 (region 7 for Drer)

syntenyRegion: Danio_rerio.glob08.11.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 11 -i 1379046:1406532 -f 21e3 some_geneID_to_be_selected
scoreRatio_sum=0.8 log_scoreRatio_sum=-0.21 focal_scoreRatio_sum=0.16
AlnScore=400 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000308252	HOXB3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000328928	HOXB4	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000239151	HOXB5	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	q1	+/+	ENSP00000225648	HOXB6	q1	q1	191.2	11	1379055	1380153	-1	2	100%	47.1%	684	0.47 / 0.59 = 0.8	between_species_paralog: hoxc6b	4
p7	---	gape	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000239165	HOXB7	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000239144	HOXB8	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000309439	HOXB9	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 29 (region 8 for Drer)

syntenyRegion: Danio_rerio.glob04.9.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 9 -i 1312491:1619897 -f 23e4 some_geneID_to_be_selected
scoreRatio_sum=2.79 log_scoreRatio_sum=-0.22 focal_scoreRatio_sum=1.26
AlnScore=1396 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q1	+/+	ENSP00000308252	HOXB3	q1	q1	379.7	9	1553343	1554744	-1	2	94%	52.2%	1182	0.5 / 0.54 = 0.93	noComparaHits: ENSDARG00000059280 ; hoxd3a	2
p4	q2	+/+	ENSP00000328928	HOXB4	q2	q2	243	9	1565337	1566370	-1	2	91.6%	54.7%	645	0.43 / 0.51 = 0.84	between_species_paralog: hoxd4a	3
p5	---	gapq	ENSP00000239151	HOXB5	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000225648	HOXB6	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q3	+/+	ENSP00000309439	HOXB9	q3	q3	245	9	1580195	1581290	-1	2	100%	45.3%	852	0.53 / 0.52 = 1.02	between_species_paralog: hoxd9a	2
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 30 (region 2 for Mdom)

syntenyRegion: Monodelphis_domestica.glob04.Un.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Monodelphis_domestica -l Un -i 106218114:106219642 -f 11e2 some_geneID_to_be_selected
scoreRatio_sum=0.78 log_scoreRatio_sum=-0.24 focal_scoreRatio_sum=0.16
AlnScore=395 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Monodelphis_domestica

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000308252	HOXB3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000328928	HOXB4	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000239151	HOXB5	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	q1	+/+	ENSP00000225648	HOXB6	q1	q1	188.8	Un	106218114	106219603	1	2	97.8%	48.1%	672	0.47 / 0.6 = 0.78	between_species_paralog: HOXC6	3
p7	---	gape	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000239165	HOXB7	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000239144	HOXB8	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000309439	HOXB9	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 31 (region 9 for Drer)

syntenyRegion: Danio_rerio.glob06.3.minQN4.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 3 -i 24709922:24717334 -f 56e2 some_geneID_to_be_selected
scoreRatio_sum=3.28 log_scoreRatio_sum=-0.25 focal_scoreRatio_sum=1.35
AlnScore=1322 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000308252	HOXB3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000328928	HOXB4	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000239151	HOXB5	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	q1	+/+	ENSP00000225648	HOXB6	q1	q1	129	3	24709925	24710173	-1	1	34.8%	74.7%	249	0.47 / 0.72 = 0.65	noComparaHits: hoxb7a	5
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	q2	+/+	ENSP00000239165	HOXB7	q1	q2	115	3	24713322	24713747	-1	1	61.8%	47.6%	426	0.42 / 0.73 = 0.58	ortholog_one2many: hoxb7a	10
p9	q3	+/+	ENSP00000239144	HOXB8	q3	q3	408	3	24715856	24717334	-1	2	99.2%	78.9%	723	0.41 / 0.2 = 2.05	ortholog_one2many: hoxb8a	1
p10	---	gape	ENSP00000309439	HOXB9	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 32 (region 2 for Tnig)

syntenyRegion: Tetraodon_nigroviridis.glob08.Un_random.minQN4.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l Un_random -i 80676474:80677664 -f 89e1 some_geneID_to_be_selected
scoreRatio_sum=0.77 log_scoreRatio_sum=-0.25 focal_scoreRatio_sum=0.1
AlnScore=345 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Tetraodon_nigroviridis

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q1	+/+	ENSP00000308252	HOXB3	q1	q1	291	Un_random	80676638	80677664	-1	2	76.8%	50.7%	945	0.5 / 0.65 = 0.77	between_species_paralog: GSTENG00003053001	4
p4	---	gape	ENSP00000328928	HOXB4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000239151	HOXB5	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000225648	HOXB6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000239165	HOXB7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000309439	HOXB9	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 33 (region 4 for Trub)

syntenyRegion: Takifugu_rubripes.glob10.scaffold_4108.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_4108 -i 5954:6196 -f 18e1 some_geneID_to_be_selected
scoreRatio_sum=0.75 log_scoreRatio_sum=-0.28 focal_scoreRatio_sum=0.75
AlnScore=284 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Takifugu_rubripes

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000308252	HOXB3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000328928	HOXB4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000239151	HOXB5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000225648	HOXB6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000239165	HOXB7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q1	+/+	ENSP00000309439	HOXB9	q1	q1	148	scaffold_4108	5966	6196	1	1	30.8%	89.6%	231	0.53 / 0.71 = 0.75	noComparaHits: NEWSINFRUG00000159744	5
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 34 (region 2 for Mmul)

syntenyRegion: Macaca_mulatta.glob02.3.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 3 -i 98981188:99131580 -f 11e4 some_geneID_to_be_selected
scoreRatio_sum=7.72 log_scoreRatio_sum=-0.29 focal_scoreRatio_sum=2.25
AlnScore=3648 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Macaca_mulatta

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	211.8	3	99130112	99131559	1	2	100%	42.9%	987	0.67 / 0.66 = 1.02	noComparaHits: HOXA1	2
p2	q2	+/+	ENSP00000331741	HOXB2	q2	q2	301	3	99123521	99125274	1	2	99.4%	47.1%	1194	0.55 / 0.57 = 0.96	ortholog_one2many: HOXA2	2
p3	q3	+/+	ENSP00000308252	HOXB3	q3	q3	418	3	99115329	99118052	1	2	100%	49%	1443	0.5 / 0.5 = 1	ortholog_one2many: HOXA3	2
p4	---	gapq	ENSP00000328928	HOXB4	q4	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	q4	+/+	ENSP00000239151	HOXB5	q4	q4	324	3	99082328	99084105	1	2	100%	60.3%	816	0.4 / 0.4 = 1	between_species_paralog: HOXA5	2
p6	q5	+/+	ENSP00000225648	HOXB6	q5	q5	249	3	99078244	99080293	1	2	100%	56.4%	702	0.47 / 0.47 = 1	between_species_paralog: HOXA6	2
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	q6	+/+	ENSP00000239165	HOXB7	q6	q6	246	3	99068833	99070350	1	2	92.6%	62.3%	588	0.42 / 0.44 = 0.95	between_species_paralog: HOXA7	2
p9	---	gapq	ENSP00000239144	HOXB8	q6	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q7	+/+	ENSP00000309439	HOXB9	q7	q7	229.8	3	99059984	99061844	1	2	93.2%	49.6%	750	0.53 / 0.55 = 0.96	between_species_paralog: HOXA9	3
---	q8	gapp	-	-	-	q8	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q9	+/+	ENSP00000290295	HOXB13	q9	q9	181.2	3	99025867	99026974	1	2	42.3%	68.6%	363	0.58 / 0.7 = 0.83	between_species_paralog: HOXA13	3
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 35 (region 3 for Mmul)

syntenyRegion: Macaca_mulatta.glob05.1099214175475.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 1099214175475 -i 270:611 -f 26e1 some_geneID_to_be_selected
scoreRatio_sum=0.74 log_scoreRatio_sum=-0.29 focal_scoreRatio_sum=0.74
AlnScore=278 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Macaca_mulatta

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000308252	HOXB3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000328928	HOXB4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000239151	HOXB5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000225648	HOXB6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000239165	HOXB7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q1	+/+	ENSP00000309439	HOXB9	q1	q1	145	1099214175475	342	563	1	1	29.6%	89.2%	222	0.53 / 0.72 = 0.74	noComparaHits:	4
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 36 (region 3 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob18.contig_2345.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_2345 -i 69:24000 -f 18e3 some_geneID_to_be_selected
scoreRatio_sum=1.74 log_scoreRatio_sum=-0.31 focal_scoreRatio_sum=1.04
AlnScore=663 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000308252	HOXB3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000328928	HOXB4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000239151	HOXB5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000225648	HOXB6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000239165	HOXB7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q1	+/+	ENSP00000309439	HOXB9	q1	q1	117	contig_2345	4584	4796	-1	1	28.4%	73.2%	213	0.53 / 0.77 = 0.69	noComparaHits: ENSGACG00000007128	10
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q2	+/+	ENSP00000290295	HOXB13	q2	q2	268	contig_2345	22662	24000	-1	2	94.4%	52.9%	807	0.58 / 0.55 = 1.05	noComparaHits: Q9PWC4_GASAC	4
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 37 (region 2 for Mmus)

syntenyRegion: Mus_musculus.glob02.6.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Mus_musculus -l 6 -i 52086248:52245575 -f 12e4 some_geneID_to_be_selected
scoreRatio_sum=8.71 log_scoreRatio_sum=-0.31 focal_scoreRatio_sum=2.43
AlnScore=4237 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Mus_musculus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	216	6	52086341	52087804	-1	2	100%	42.7%	1002	0.67 / 0.66 = 1.02	noComparaHits: Hoxa1	2
p2	q2	+/+	ENSP00000331741	HOXB2	q2	q2	324	6	52092484	52094227	-1	2	99.4%	49.6%	1215	0.55 / 0.53 = 1.04	between_species_paralog: Hoxa2	2
p3	q3	+/+	ENSP00000308252	HOXB3	q3	q3	398.2	6	52099526	52102232	-1	2	100%	46.6%	1521	0.5 / 0.52 = 0.96	between_species_paralog: Hoxa3	3
p4	q4	+/+	ENSP00000328928	HOXB4	q4	q4	227.6	6	52120000	52121271	-1	2	96.8%	48.3%	783	0.43 / 0.54 = 0.8	between_species_paralog: Hoxa4	4
p5	q5	+/+	ENSP00000239151	HOXB5	q5	q5	322	6	52132167	52133933	-1	2	100%	59.6%	816	0.4 / 0.41 = 0.98	between_species_paralog: Hoxa5	2
p6	q6	+/+	ENSP00000225648	HOXB6	q6	q6	248	6	52135951	52138207	-1	2	100%	56.2%	699	0.47 / 0.48 = 0.98	between_species_paralog: Hoxa6	2
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	q7	+/+	ENSP00000239165	HOXB7	q7	q7	244	6	52145402	52146988	-1	2	94%	59%	618	0.42 / 0.44 = 0.95	between_species_paralog: Hoxa7	2
p9	---	gapq	ENSP00000239144	HOXB8	q7	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q8	+/+	ENSP00000309439	HOXB9	q8	q8	231.8	6	52153833	52155687	-1	2	94.8%	49.4%	759	0.53 / 0.55 = 0.96	between_species_paralog: Hoxa9	4
---	q9	gapp	-	-	-	q9	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q10	+/+	ENSP00000290295	HOXB13	q10	q10	257	6	52188490	52189924	-1	2	76.8%	57.9%	699	0.58 / 0.57 = 1.02	between_species_paralog: Hoxa13	2
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 38 (region 5 for Trub)

syntenyRegion: Takifugu_rubripes.glob07.scaffold_346.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_346 -i 187165:226465 -f 29e3 some_geneID_to_be_selected
scoreRatio_sum=1.69 log_scoreRatio_sum=-0.33 focal_scoreRatio_sum=0.43
AlnScore=836 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Takifugu_rubripes

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000308252	HOXB3	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000328928	HOXB4	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	q1	+/+	ENSP00000239151	HOXB5	q1	q1	268	scaffold_346	225068	226426	1	2	98.1%	52.3%	804	0.4 / 0.51 = 0.78	between_species_paralog: NEWSINFRUG00000149630	3
p6	---	gapq	ENSP00000225648	HOXB6	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000239144	HOXB8	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gapq	ENSP00000309439	HOXB9	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q2	+/+	ENSP00000290295	HOXB13	q2	q2	219	scaffold_346	195270	196163	1	2	59.2%	61.3%	519	0.58 / 0.64 = 0.91	between_species_paralog: NEWSINFRUG00000162059	6
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 39 (region 2 for Olat)

syntenyRegion: Oryzias_latipes.glob04.21.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Oryzias_latipes -l 21 -i 24591355:24637174 -f 34e3 some_geneID_to_be_selected
scoreRatio_sum=2.67 log_scoreRatio_sum=-0.34 focal_scoreRatio_sum=1.14
AlnScore=1343 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Oryzias_latipes

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q1	+/+	ENSP00000308252	HOXB3	q1	q1	385.3	21	24635889	24637174	1	2	94%	53.4%	1185	0.5 / 0.54 = 0.93	between_species_paralog: Q3V5Z9_ORYLA	2
p4	q2	+/+	ENSP00000328928	HOXB4	q2	q2	240.3	21	24626722	24627754	1	2	94%	53.3%	660	0.43 / 0.52 = 0.83	between_species_paralog: Q3V5Z8_ORYLA	3
p5	---	gapq	ENSP00000239151	HOXB5	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000225648	HOXB6	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q3	+/+	ENSP00000309439	HOXB9	q3	q3	217.2	21	24614922	24616096	1	2	70.4%	57.4%	528	0.53 / 0.58 = 0.91	between_species_paralog: HXD9_ORYLA	2
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 40 (region 3 for Tnig)

syntenyRegion: Tetraodon_nigroviridis.glob10.3.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l 3 -i 679905:695510 -f 12e3 some_geneID_to_be_selected
scoreRatio_sum=0.7 log_scoreRatio_sum=-0.35 focal_scoreRatio_sum=0.7
AlnScore=224 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Tetraodon_nigroviridis

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000308252	HOXB3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000328928	HOXB4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000239151	HOXB5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000225648	HOXB6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000239165	HOXB7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gaps	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q1	+/+	ENSP00000309439	HOXB9	q2	q1	121	3	679926	680150	-1	1	30%	72%	225	0.53 / 0.76 = 0.7	noComparaHits: GSTENG00031864001	7
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gapq	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q2	gape	-	-	-	q2	-	-	-	-	-	-	-	-	-	-	-	-

region 41 (region 6 for Trub)

syntenyRegion: Takifugu_rubripes.glob04.scaffold_100.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_100 -i 339085:379367 -f 30e3 some_geneID_to_be_selected
scoreRatio_sum=2.65 log_scoreRatio_sum=-0.36 focal_scoreRatio_sum=1.14
AlnScore=1316 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Takifugu_rubripes

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q1	+/+	ENSP00000308252	HOXB3	q1	q1	374.2	scaffold_100	339085	340364	-1	2	99.5%	49.9%	1221	0.5 / 0.55 = 0.91	between_species_paralog: NEWSINFRUG00000124774	3
p4	q2	+/+	ENSP00000328928	HOXB4	q2	q2	236	scaffold_100	348462	349464	-1	2	93.2%	54%	651	0.43 / 0.52 = 0.83	between_species_paralog: NEWSINFRUG00000124775	3
p5	---	gapq	ENSP00000239151	HOXB5	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000225648	HOXB6	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q3	+/+	ENSP00000309439	HOXB9	q3	q3	214	scaffold_100	358383	359535	-1	2	100%	45.2%	792	0.53 / 0.58 = 0.91	between_species_paralog: NEWSINFRUG00000124776	2
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 42 (region 4 for Tnig)

syntenyRegion: Tetraodon_nigroviridis.glob05.2.minQN4.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l 2 -i 11075386:11117989 -f 32e3 some_geneID_to_be_selected
scoreRatio_sum=2.65 log_scoreRatio_sum=-0.36 focal_scoreRatio_sum=1.12
AlnScore=1332 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Tetraodon_nigroviridis

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q1	+/+	ENSP00000308252	HOXB3	q1	q1	377.8	2	11075386	11076667	-1	2	97.9%	51.4%	1200	0.5 / 0.55 = 0.91	between_species_paralog: GSTENG00031464001 ; HOXD3	3
p4	q2	+/+	ENSP00000328928	HOXB4	q2	q2	248	2	11087965	11088977	-1	3	93.2%	51.7%	726	0.43 / 0.5 = 0.86	between_species_paralog: GSTENG00031463001 ; HOXD4	3
p5	---	gapq	ENSP00000239151	HOXB5	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000225648	HOXB6	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q3	+/+	ENSP00000309439	HOXB9	q3	q3	207.5	2	11097829	11098947	-1	2	70%	54.1%	531	0.53 / 0.6 = 0.88	between_species_paralog: GSTENG00031462001	3
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 43 (region 4 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob04.contig_5303.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_5303 -i 230508:277218 -f 35e3 some_geneID_to_be_selected
scoreRatio_sum=2.65 log_scoreRatio_sum=-0.37 focal_scoreRatio_sum=1.16
AlnScore=1325 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q1	+/+	ENSP00000308252	HOXB3	q1	q1	394	contig_5303	275876	277218	1	2	100%	51.6%	1287	0.5 / 0.53 = 0.94	noComparaHits: ENSGACG00000004548	3
p4	q2	+/+	ENSP00000328928	HOXB4	q2	q2	223.9	contig_5303	266163	267205	1	2	92.4%	52.3%	648	0.43 / 0.55 = 0.78	noComparaHits: ENSGACG00000004551	4
p5	---	gapq	ENSP00000239151	HOXB5	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000225648	HOXB6	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q3	+/+	ENSP00000309439	HOXB9	q3	q3	219.7	contig_5303	254049	255336	1	3	67.6%	57.2%	522	0.53 / 0.57 = 0.93	noComparaHits: Q4VQD4_GASAC	2
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 44 (region 5 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob05.groupXVI.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l groupXVI -i 9792262:9838972 -f 35e3 some_geneID_to_be_selected
scoreRatio_sum=2.65 log_scoreRatio_sum=-0.37 focal_scoreRatio_sum=1.16
AlnScore=1325 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q1	+/+	ENSP00000308252	HOXB3	q1	q1	394	groupXVI	9792262	9793604	-1	2	100%	51.6%	1287	0.5 / 0.53 = 0.94	between_species_paralog: ENSGACG00000004548	3
p4	q2	+/+	ENSP00000328928	HOXB4	q2	q2	223.9	groupXVI	9802275	9803317	-1	2	92.4%	52.3%	648	0.43 / 0.55 = 0.78	between_species_paralog: ENSGACG00000004551	4
p5	---	gapq	ENSP00000239151	HOXB5	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000225648	HOXB6	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q3	+/+	ENSP00000309439	HOXB9	q3	q3	219.7	groupXVI	9814144	9815431	-1	3	67.6%	57.2%	522	0.53 / 0.57 = 0.93	between_species_paralog: Q4VQD4_GASAC	2
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 45 (region 5 for Tnig)

syntenyRegion: Tetraodon_nigroviridis.glob03.2.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l 2 -i 1166948:1444911 -f 21e4 some_geneID_to_be_selected
scoreRatio_sum=4.73 log_scoreRatio_sum=-0.41 focal_scoreRatio_sum=0.82
AlnScore=1819 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Tetraodon_nigroviridis

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	197.3	2	1421789	1422735	-1	2	95.3%	43.6%	849	0.67 / 0.69 = 0.97	noComparaHits: HOXBb1 ; GSTENG00019145001 ; GSTENG00039005450	1
p2	---	gapq	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q2	+/+	ENSP00000308252	HOXB3	q2	q2	108	2	1424212	1424409	-1	1	15.3%	80.3%	198	0.5 / 0.87 = 0.57	noComparaHits: HOXBb3 ; GSTENG00019144001	5
p4	---	gapq	ENSP00000328928	HOXB4	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	q3	+/+	ENSP00000239151	HOXB5	q3	q3	345	2	1432898	1434137	-1	2	99.3%	64.5%	831	0.4 / 0.37 = 1.08	ortholog_one2many: HOXBb5	1
p6	q4	+/+	ENSP00000225648	HOXB6	q4	q4	281	2	1435426	1437034	-1	2	94.2%	58.8%	711	0.47 / 0.41 = 1.15	ortholog_one2many: GSTENG00019143001 ; HOXBb6	1
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q4	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000239144	HOXB8	q4	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gapq	ENSP00000309439	HOXB9	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	q5	+/+	ENSP00000302547	TTLL6	q5	q5	208.5	2	1444367	1444911	-1	2	23.7%	66.9%	444	0.78 / 0.81 = 0.96	ortholog_one2one: GSTENG00019142001	1
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 46 (region 5 for Ggal)

syntenyRegion: Gallus_gallus.glob05.Un_random.minQN4.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l Un_random -i 376678:377022 -f 26e1 some_geneID_to_be_selected
scoreRatio_sum=0.65 log_scoreRatio_sum=-0.42 focal_scoreRatio_sum=0.09
AlnScore=333 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gallus_gallus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000308252	HOXB3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	q1	+/+	ENSP00000328928	HOXB4	q1	q1	167	Un_random	376765	377022	-1	1	34.3%	90.7%	258	0.43 / 0.66 = 0.65	ortholog_one2one: HOXB4	2
p5	---	gape	ENSP00000239151	HOXB5	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000225648	HOXB6	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000239165	HOXB7	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000309439	HOXB9	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 47 (region 6 for Ggal)

syntenyRegion: Gallus_gallus.glob06.1.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 1 -i 180355088:180368165 -f 98e2 some_geneID_to_be_selected
scoreRatio_sum=0.65 log_scoreRatio_sum=-0.42 focal_scoreRatio_sum=0.07
AlnScore=144 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gallus_gallus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000331741	HOXB2	q1	q1	101	1	180367650	180368165	-1	1	50.6%	37.7%	516	0.55 / 0.85 = 0.65	noComparaHits: IPF1	7
p3	---	gape	ENSP00000308252	HOXB3	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000328928	HOXB4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000239151	HOXB5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000225648	HOXB6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000239165	HOXB7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000309439	HOXB9	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 48 (region 4 for Btau)

syntenyRegion: Bos_taurus.glob07.12.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Bos_taurus -l 12 -i 17059616:17152280 -f 69e3 some_geneID_to_be_selected
scoreRatio_sum=0.65 log_scoreRatio_sum=-0.42 focal_scoreRatio_sum=0.07
AlnScore=152 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Bos_taurus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000331741	HOXB2	q1	q1	107	12	17151723	17152280	1	1	48%	39.4%	558	0.55 / 0.84 = 0.65	noComparaHits: IPF1	5
p3	---	gape	ENSP00000308252	HOXB3	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000328928	HOXB4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000239151	HOXB5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000225648	HOXB6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000239165	HOXB7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000309439	HOXB9	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 49 (region 2 for Cfam)

syntenyRegion: Canis_familiaris.glob05.25.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 25 -i 14692875:14841844 -f 11e4 some_geneID_to_be_selected
scoreRatio_sum=0.65 log_scoreRatio_sum=-0.42 focal_scoreRatio_sum=0.07
AlnScore=146 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Canis_familiaris

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000331741	HOXB2	q1	q1	103	25	14729986	14730519	-1	1	51.1%	37.8%	534	0.55 / 0.85 = 0.65	noComparaHits: 493994	5
p3	---	gape	ENSP00000308252	HOXB3	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000328928	HOXB4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000239151	HOXB5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000225648	HOXB6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000239165	HOXB7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000309439	HOXB9	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 50 (region 3 for Mmus)

syntenyRegion: Mus_musculus.glob05.5.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Mus_musculus -l 5 -i 147500120:147613697 -f 85e3 some_geneID_to_be_selected
scoreRatio_sum=0.65 log_scoreRatio_sum=-0.42 focal_scoreRatio_sum=0.07
AlnScore=149 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Mus_musculus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000331741	HOXB2	q1	q1	105	5	147584689	147585255	1	1	46.9%	37.2%	567	0.55 / 0.85 = 0.65	noComparaHits: Ipf1	5
p3	---	gape	ENSP00000308252	HOXB3	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gape	ENSP00000328928	HOXB4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000239151	HOXB5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000225648	HOXB6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000239165	HOXB7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000309439	HOXB9	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 51 (region 7 for Ggal)

syntenyRegion: Gallus_gallus.glob08.Un_random.minQN4.fac2.04.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l Un_random -i 13865410:13865646 -f 18e1 some_geneID_to_be_selected
scoreRatio_sum=0.64 log_scoreRatio_sum=-0.44 focal_scoreRatio_sum=0.13
AlnScore=266 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gallus_gallus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000308252	HOXB3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000328928	HOXB4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000239151	HOXB5	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	q1	+/+	ENSP00000225648	HOXB6	q1	q1	127	Un_random	13865410	13865607	1	1	29.5%	92.4%	198	0.47 / 0.73 = 0.64	noComparaHits:	5
p7	---	gape	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000239165	HOXB7	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000309439	HOXB9	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 52 (region 6 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob12.contig_1095.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_1095 -i 26429:50116 -f 18e3 some_geneID_to_be_selected
scoreRatio_sum=2.62 log_scoreRatio_sum=-0.44 focal_scoreRatio_sum=1.17
AlnScore=1030 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000331741	HOXB2	q1	q1	234	contig_1095	48561	50116	1	2	96.6%	44.7%	1014	0.55 / 0.66 = 0.83	noComparaHits: ENSGACG00000008314	3
p3	---	gapq	ENSP00000308252	HOXB3	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gapq	ENSP00000328928	HOXB4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gapq	ENSP00000239151	HOXB5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000225648	HOXB6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q2	+/+	ENSP00000309439	HOXB9	q2	q2	133	contig_1095	43338	43568	1	1	30.8%	79.2%	231	0.53 / 0.74 = 0.72	noComparaHits: ENSGACG00000008310	7
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q3	+/+	ENSP00000290295	HOXB13	q3	q3	279	contig_1095	26429	27479	1	2	96.1%	52.1%	813	0.58 / 0.54 = 1.07	noComparaHits: ENSGACG00000008296	3
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 53 (region 7 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob13.groupXX.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l groupXX -i 9710669:9734356 -f 18e3 some_geneID_to_be_selected
scoreRatio_sum=2.62 log_scoreRatio_sum=-0.44 focal_scoreRatio_sum=1.17
AlnScore=1030 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000331741	HOXB2	q1	q1	234	groupXX	9732801	9734356	1	2	96.6%	44.7%	1014	0.55 / 0.66 = 0.83	between_species_paralog: ENSGACG00000008314	3
p3	---	gapq	ENSP00000308252	HOXB3	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gapq	ENSP00000328928	HOXB4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gapq	ENSP00000239151	HOXB5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000225648	HOXB6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q2	+/+	ENSP00000309439	HOXB9	q2	q2	133	groupXX	9727578	9727808	1	1	30.8%	79.2%	231	0.53 / 0.74 = 0.72	between_species_paralog: ENSGACG00000008310	7
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q3	+/+	ENSP00000290295	HOXB13	q3	q3	279	groupXX	9710669	9711719	1	2	96.1%	52.1%	813	0.58 / 0.54 = 1.07	between_species_paralog: ENSGACG00000008296	3
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 54 (region 2 for Xtro)

syntenyRegion: Xenopus_tropicalis.glob02.scaffold_56.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Xenopus_tropicalis -l scaffold_56 -i 1324797:1481229 -f 12e4 some_geneID_to_be_selected
scoreRatio_sum=8.6 log_scoreRatio_sum=-0.44 focal_scoreRatio_sum=2.48
AlnScore=4150 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Xenopus_tropicalis

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	187.5	scaffold_56	1479966	1481208	1	2	100%	41.5%	960	0.67 / 0.7 = 0.96	noComparaHits: hoxa1	2
p2	q2	+/+	ENSP00000331741	HOXB2	q2	q2	290	scaffold_56	1470271	1471789	1	2	96.6%	48.7%	1074	0.55 / 0.58 = 0.95	ortholog_one2many: HOXA2	2
p3	q3	+/+	ENSP00000308252	HOXB3	q3	q3	333	scaffold_56	1464665	1465438	1	1	60.1%	65.5%	774	0.5 / 0.6 = 0.83	between_species_paralog: HOXA3	3
---	q4	gapp	-	-	-	q4	-	-	-	-	-	-	-	-	-	-	-	-
p4	q5	+/+	ENSP00000328928	HOXB4	q5	q5	261.4	scaffold_56	1443839	1444907	1	2	94%	50.4%	759	0.43 / 0.47 = 0.91	between_species_paralog: HOXA4	3
p5	q6	+/+	ENSP00000239151	HOXB5	q6	q6	310	scaffold_56	1433019	1434430	1	2	100%	58.4%	828	0.4 / 0.43 = 0.93	between_species_paralog: hoxa5	2
p6	q7	+/+	ENSP00000225648	HOXB6	q7	q7	250	scaffold_56	1430023	1431420	1	2	100%	56.4%	699	0.47 / 0.47 = 1	noComparaHits: ENSXETG00000027535	2
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	q8	+/+	ENSP00000239165	HOXB7	q8	q8	223.7	scaffold_56	1421765	1423383	1	2	95.9%	54%	615	0.42 / 0.49 = 0.86	ortholog_one2many: HOXA7	1
p9	---	gapq	ENSP00000239144	HOXB8	q8	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q9	+/+	ENSP00000309439	HOXB9	q9	q9	248	scaffold_56	1415310	1416632	1	2	81.6%	56.7%	630	0.53 / 0.52 = 1.02	noComparaHits: ENSXETG00000000724	2
---	q10	gapp	-	-	-	q10	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q11	+/+	ENSP00000290295	HOXB13	q11	q11	293	scaffold_56	1384919	1386299	1	2	90.8%	54.6%	792	0.58 / 0.51 = 1.14	between_species_paralog: HOXA13	1
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 55 (region 8 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob17.contig_4903.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_4903 -i 10686:10931 -f 18e1 some_geneID_to_be_selected
scoreRatio_sum=0.61 log_scoreRatio_sum=-0.48 focal_scoreRatio_sum=0.09
AlnScore=283 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000308252	HOXB3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	q1	+/+	ENSP00000328928	HOXB4	q1	q1	142	contig_4903	10689	10931	-1	1	32.3%	81.5%	243	0.43 / 0.71 = 0.61	noComparaHits:	5
p5	---	gape	ENSP00000239151	HOXB5	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000225648	HOXB6	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000239165	HOXB7	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000309439	HOXB9	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 56 (region 7 for Trub)

syntenyRegion: Takifugu_rubripes.glob06.scaffold_48.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_48 -i 1056667:1085909 -f 22e3 some_geneID_to_be_selected
scoreRatio_sum=2.56 log_scoreRatio_sum=-0.49 focal_scoreRatio_sum=1.14
AlnScore=995 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Takifugu_rubripes

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000331741	HOXB2	q1	q1	246.3	scaffold_48	1056667	1058129	-1	2	93.3%	48.5%	984	0.55 / 0.64 = 0.86	between_species_paralog: NEWSINFRUG00000138063	3
p3	---	gapq	ENSP00000308252	HOXB3	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gapq	ENSP00000328928	HOXB4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gapq	ENSP00000239151	HOXB5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000225648	HOXB6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q2	+/+	ENSP00000309439	HOXB9	q2	q2	134	scaffold_48	1063099	1063329	-1	1	30.8%	79.2%	231	0.53 / 0.74 = 0.72	between_species_paralog: NEWSINFRUG00000138062	6
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q3	+/+	ENSP00000290295	HOXB13	q3	q3	246	scaffold_48	1084992	1085909	-1	1	94.4%	45.4%	918	0.58 / 0.59 = 0.98	between_species_paralog: NEWSINFRUG00000132089	4
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 57 (region 5 for Btau)

syntenyRegion: Bos_taurus.glob04.2.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Bos_taurus -l 2 -i 16934870:17074091 -f 10e4 some_geneID_to_be_selected
scoreRatio_sum=5.52 log_scoreRatio_sum=-0.5 focal_scoreRatio_sum=2.09
AlnScore=2530 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Bos_taurus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	117	2	16935029	16935268	-1	1	26.6%	72.8%	240	0.67 / 0.81 = 0.83	noComparaHits: HOXD1	3
p2	---	gapq	ENSP00000331741	HOXB2	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q2	+/+	ENSP00000308252	HOXB3	q2	q2	414	2	16951347	16954640	-1	2	94%	53.5%	1248	0.5 / 0.5 = 1	between_species_paralog: HOXD3	3
p4	q3	+/+	ENSP00000328928	HOXB4	q3	q3	253.8	2	16969554	16970762	-1	2	90.4%	56.6%	669	0.43 / 0.49 = 0.88	between_species_paralog: HOXD4	2
p5	---	gapq	ENSP00000239151	HOXB5	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000225648	HOXB6	q3,q4	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q4	+/+	ENSP00000239144	HOXB8	q4	q4	274	2	16991153	16992329	-1	2	92.2%	51.5%	885	0.41 / 0.46 = 0.89	between_species_paralog: HOXD8	1
p10	q5	+/+	ENSP00000309439	HOXB9	q5	q5	239.7	2	16998559	16999927	-1	2	70.8%	62.2%	564	0.53 / 0.53 = 1	between_species_paralog: HOXD9	2
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q6	+/+	ENSP00000290295	HOXB13	q6	q6	225	2	17072582	17074091	-1	2	77.1%	48.3%	699	0.58 / 0.63 = 0.92	between_species_paralog: HOXD13	2
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 58 (region 3 for Olat)

syntenyRegion: Oryzias_latipes.glob06.16.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Oryzias_latipes -l 16 -i 13115273:13137431 -f 17e3 some_geneID_to_be_selected
scoreRatio_sum=2.56 log_scoreRatio_sum=-0.51 focal_scoreRatio_sum=1.16
AlnScore=983 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Oryzias_latipes

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000331741	HOXB2	q1	q1	203	16	13135966	13137431	1	2	93.5%	43.3%	936	0.55 / 0.71 = 0.77	between_species_paralog: Q3V627_ORYLA	3
p3	---	gapq	ENSP00000308252	HOXB3	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gapq	ENSP00000328928	HOXB4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gapq	ENSP00000239151	HOXB5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000225648	HOXB6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q2	+/+	ENSP00000309439	HOXB9	q2	q2	131	16	13131574	13131804	1	1	30.8%	77.9%	231	0.53 / 0.74 = 0.72	between_species_paralog: Q3V626_ORYLA	6
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q3	+/+	ENSP00000290295	HOXB13	q3	q3	280	16	13115273	13116159	1	2	90.5%	54.2%	759	0.58 / 0.54 = 1.07	between_species_paralog: Q3V623_ORYLA	1
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 59 (region 4 for Mmul)

syntenyRegion: Macaca_mulatta.glob06.17.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 17 -i 7468448:7621326 -f 11e4 some_geneID_to_be_selected
scoreRatio_sum=0.57 log_scoreRatio_sum=-0.55 focal_scoreRatio_sum=0.07
AlnScore=125 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Macaca_mulatta

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q1	+/+	ENSP00000308252	HOXB3	q1	q1	106	17	7585833	7586192	1	1	26.5%	50%	360	0.5 / 0.87 = 0.57	noComparaHits: IPF1	5
p4	---	gape	ENSP00000328928	HOXB4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000239151	HOXB5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000225648	HOXB6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000239165	HOXB7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000309439	HOXB9	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 60 (region 3 for Hsap)

syntenyRegion: Homo_sapiens.glob03.2.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 2 -i 176655149:176763176 -f 81e3 some_geneID_to_be_selected
scoreRatio_sum=5.48 log_scoreRatio_sum=-0.55 focal_scoreRatio_sum=2.07
AlnScore=2496 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Homo_sapiens

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	115	2	176762784	176763095	1	1	34.6%	60%	312	0.67 / 0.82 = 0.82	noComparaHits: HOXD1	3
p2	---	gapq	ENSP00000331741	HOXB2	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q2	+/+	ENSP00000308252	HOXB3	q2	q2	408	2	176742137	176745245	1	2	92.3%	54.2%	1221	0.5 / 0.51 = 0.98	within_species_paralog: HOXD3	3
p4	q3	+/+	ENSP00000328928	HOXB4	q3	q3	255.9	2	176724608	176725835	1	2	94.4%	56%	687	0.43 / 0.48 = 0.9	within_species_paralog: HOXD4	4
p5	---	gapq	ENSP00000239151	HOXB5	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000225648	HOXB6	q3,q4	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q4	+/+	ENSP00000239144	HOXB8	q4	q4	259	2	176703341	176704538	1	2	92.2%	51.4%	825	0.41 / 0.49 = 0.84	within_species_paralog: HOXD8	3
p10	q5	+/+	ENSP00000309439	HOXB9	q5	q5	240.1	2	176695773	176697131	1	2	74.4%	60.4%	591	0.53 / 0.53 = 1	within_species_paralog: HOXD9	2
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q6	+/+	ENSP00000290295	HOXB13	q6	q6	226	2	176666165	176667701	1	2	79.9%	46.5%	759	0.58 / 0.62 = 0.94	within_species_paralog: HOXD13	3
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 61 (region 4 for Hsap)

syntenyRegion: Homo_sapiens.glob05.13.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 13 -i 27265651:27437291 -f 13e4 some_geneID_to_be_selected
scoreRatio_sum=0.57 log_scoreRatio_sum=-0.55 focal_scoreRatio_sum=0.07
AlnScore=128 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Homo_sapiens

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q1	+/+	ENSP00000308252	HOXB3	q1	q1	108	13	27396221	27396682	1	1	31.1%	43.5%	462	0.5 / 0.87 = 0.57	noComparaHits: IPF1	5
p4	---	gape	ENSP00000328928	HOXB4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000239151	HOXB5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000225648	HOXB6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000239165	HOXB7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000309439	HOXB9	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 62 (region 4 for Olat)

syntenyRegion: Oryzias_latipes.glob11.2.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Oryzias_latipes -l 2 -i 17532338:17532628 -f 22e1 some_geneID_to_be_selected
scoreRatio_sum=0.57 log_scoreRatio_sum=-0.55 focal_scoreRatio_sum=0.07
AlnScore=118 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Oryzias_latipes

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q1	+/+	ENSP00000308252	HOXB3	q1	q1	100	2	17532347	17532628	-1	1	24.4%	52.4%	282	0.5 / 0.88 = 0.57	noComparaHits: Q90ZR2_ORYLA	10
p4	---	gape	ENSP00000328928	HOXB4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000239151	HOXB5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000225648	HOXB6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000239165	HOXB7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000309439	HOXB9	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 63 (region 3 for Mdom)

syntenyRegion: Monodelphis_domestica.glob05.4.minQN4.fac2.02.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Monodelphis_domestica -l 4 -i 288288777:288480685 -f 14e4 some_geneID_to_be_selected
scoreRatio_sum=0.57 log_scoreRatio_sum=-0.55 focal_scoreRatio_sum=0.07
AlnScore=122 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Monodelphis_domestica

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q1	+/+	ENSP00000308252	HOXB3	q1	q1	103	4	288439997	288440419	1	1	31.6%	44.4%	423	0.5 / 0.87 = 0.57	noComparaHits: IPF1	7
p4	---	gape	ENSP00000328928	HOXB4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000239151	HOXB5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000225648	HOXB6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000239165	HOXB7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000309439	HOXB9	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 64 (region 6 for Tnig)

syntenyRegion: Tetraodon_nigroviridis.glob09.6.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l 6 -i 2710798:2711244 -f 34e1 some_geneID_to_be_selected
scoreRatio_sum=0.57 log_scoreRatio_sum=-0.55 focal_scoreRatio_sum=0.07
AlnScore=118 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Tetraodon_nigroviridis

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q1	+/+	ENSP00000308252	HOXB3	q1	q1	100	6	2710798	2711220	-1	1	31.8%	42.1%	423	0.5 / 0.88 = 0.57	noComparaHits: GSTENG00023870001	9
p4	---	gape	ENSP00000328928	HOXB4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gape	ENSP00000239151	HOXB5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gape	ENSP00000225648	HOXB6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000239165	HOXB7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000309439	HOXB9	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 65 (region 9 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob11.contig_9874.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_9874 -i 2478:8413 -f 45e2 some_geneID_to_be_selected
scoreRatio_sum=1.51 log_scoreRatio_sum=-0.56 focal_scoreRatio_sum=0.27
AlnScore=811 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000308252	HOXB3	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000328928	HOXB4	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	q1	+/+	ENSP00000239151	HOXB5	q1	q1	280	contig_9874	2478	4382	-1	2	82.2%	63%	765	0.4 / 0.48 = 0.83	noComparaHits: ENSGACG00000005626	1
p6	q2	+/+	ENSP00000225648	HOXB6	q2	q2	144	contig_9874	8132	8413	-1	1	38.4%	74.5%	282	0.47 / 0.69 = 0.68	noComparaHits: ENSGACG00000005623	2
p7	---	gape	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000239165	HOXB7	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000239144	HOXB8	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000309439	HOXB9	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 66 (region 6 for Btau)

syntenyRegion: Bos_taurus.glob03.4.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Bos_taurus -l 4 -i 37098097:37159236 -f 46e3 some_geneID_to_be_selected
scoreRatio_sum=6.5 log_scoreRatio_sum=-0.58 focal_scoreRatio_sum=1.09
AlnScore=3230 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Bos_taurus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	206.8	4	37157707	37159185	1	2	100%	42.2%	990	0.67 / 0.67 = 1	noComparaHits: HOXA1	2
p2	q2	+/+	ENSP00000331741	HOXB2	q2	q2	306	4	37151131	37152869	1	2	97.2%	49.9%	1104	0.55 / 0.56 = 0.98	between_species_paralog: HOXA2	2
p3	q3	+/+	ENSP00000308252	HOXB3	q3	q3	438.9	4	37142956	37145704	1	3	99.8%	53.8%	1359	0.5 / 0.47 = 1.06	between_species_paralog: HOXA3	2
p4	q4	+/+	ENSP00000328928	HOXB4	q4	q4	171	4	37124791	37125069	1	1	37.1%	81.7%	279	0.43 / 0.65 = 0.66	between_species_paralog: HOXA4	4
p5	q5	+/+	ENSP00000239151	HOXB5	q5	q5	301	4	37111024	37112777	1	2	97.8%	58.2%	789	0.4 / 0.45 = 0.89	between_species_paralog: HOXA5	2
p6	q6	+/+	ENSP00000225648	HOXB6	q6	q6	246	4	37106916	37108988	1	2	100%	55.9%	702	0.47 / 0.48 = 0.98	ortholog_one2many: HOXA6	2
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	q7	+/+	ENSP00000239165	HOXB7	q7	q7	241	4	37098097	37099658	1	2	94.5%	59.7%	600	0.42 / 0.45 = 0.93	between_species_paralog: HOXA7	2
p9	---	gape	ENSP00000239144	HOXB8	q7	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000309439	HOXB9	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 67 (region 5 for Olat)

syntenyRegion: Oryzias_latipes.glob02.11.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Oryzias_latipes -l 11 -i 10492560:10571803 -f 59e3 some_geneID_to_be_selected
scoreRatio_sum=6.46 log_scoreRatio_sum=-0.58 focal_scoreRatio_sum=1.81
AlnScore=3010 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Oryzias_latipes

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	179.5	11	10492587	10493923	-1	2	98%	40.7%	957	0.67 / 0.71 = 0.94	noComparaHits: Q3V637_ORYLA	2
p2	q2	+/+	ENSP00000331741	HOXB2	q2	q2	300	11	10497917	10499533	-1	2	92.4%	52.1%	999	0.55 / 0.57 = 0.96	between_species_paralog: Q3V636_ORYLA	2
p3	q3	+/+	ENSP00000308252	HOXB3	q3	q3	419.2	11	10503391	10506703	-1	2	96.5%	54.2%	1305	0.5 / 0.5 = 1	between_species_paralog: Q3V635_ORYLA	1
p4	q4	+/+	ENSP00000328928	HOXB4	q4	q4	229.5	11	10516211	10517399	-1	2	96%	47.5%	762	0.43 / 0.54 = 0.8	noComparaHits: Q9PTV6_ORYLA	4
p5	q5	+/+	ENSP00000239151	HOXB5	q5	q5	281	11	10525353	10526735	-1	2	100%	54.4%	837	0.4 / 0.48 = 0.83	noComparaHits: Q9PTV6_ORYLA	2
p6	---	gapq	ENSP00000225648	HOXB6	q5	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q5	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000239144	HOXB8	q5	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q6	+/+	ENSP00000309439	HOXB9	q6	q6	206.9	11	10539594	10540702	-1	2	98.4%	47.9%	789	0.53 / 0.6 = 0.88	noComparaHits: Q9PTV6_ORYLA	3
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q7	+/+	ENSP00000290295	HOXB13	q7	q7	274	11	10561902	10563142	-1	2	94.4%	51.4%	843	0.58 / 0.55 = 1.05	between_species_paralog: Q3V628_ORYLA	2
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 68 (region 4 for Mmus)

syntenyRegion: Mus_musculus.glob03.2.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Mus_musculus -l 2 -i 74458603:74565135 -f 80e3 some_geneID_to_be_selected
scoreRatio_sum=5.44 log_scoreRatio_sum=-0.6 focal_scoreRatio_sum=2.05
AlnScore=2491 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Mus_musculus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	115	2	74564896	74565111	1	1	23.6%	79.2%	216	0.67 / 0.82 = 0.82	noComparaHits: Hoxd1	3
p2	---	gapq	ENSP00000331741	HOXB2	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q2	+/+	ENSP00000308252	HOXB3	q2	q2	412	2	74544899	74547915	1	2	92.3%	53.6%	1224	0.5 / 0.51 = 0.98	between_species_paralog: Hoxd3	2
p4	q3	+/+	ENSP00000328928	HOXB4	q3	q3	254	2	74528118	74529375	1	2	96.8%	52.3%	729	0.43 / 0.49 = 0.88	noComparaHits: Hoxd3	3
p5	---	gapq	ENSP00000239151	HOXB5	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000225648	HOXB6	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q4	+/+	ENSP00000239144	HOXB8	q4	q4	253	2	74506387	74507600	1	2	92.2%	50%	819	0.41 / 0.5 = 0.82	between_species_paralog: Hoxd8	2
p10	q5	+/+	ENSP00000309439	HOXB9	q5	q5	240.1	2	74498895	74500242	1	2	70.8%	62.9%	558	0.53 / 0.53 = 1	between_species_paralog: Hoxd9	2
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q6	+/+	ENSP00000290295	HOXB13	q6	q6	229	2	74469449	74470972	1	2	78.5%	47.1%	744	0.58 / 0.62 = 0.94	between_species_paralog: Hoxd13	3
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 69 (region 7 for Tnig)

syntenyRegion: Tetraodon_nigroviridis.glob11.Un_random.minQN4.fac2.03.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l Un_random -i 110113334:110113540 -f 16e1 some_geneID_to_be_selected
scoreRatio_sum=0.53 log_scoreRatio_sum=-0.62 focal_scoreRatio_sum=0.27
AlnScore=221 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Tetraodon_nigroviridis

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000308252	HOXB3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000328928	HOXB4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000239151	HOXB5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000225648	HOXB6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gaps	ENSP00000239165	HOXB7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q1	+/+	ENSP00000239144	HOXB8	q1	q1	114	Un_random	110113334	110113540	1	1	28.4%	82.6%	207	0.41 / 0.77 = 0.53	noComparaHits: GSTENG00008821001	3
p10	---	gape	ENSP00000309439	HOXB9	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 70 (region 4 for Mdom)

syntenyRegion: Monodelphis_domestica.glob03.4.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Monodelphis_domestica -l 4 -i 187420006:187538599 -f 89e3 some_geneID_to_be_selected
scoreRatio_sum=5.4 log_scoreRatio_sum=-0.65 focal_scoreRatio_sum=2.08
AlnScore=2468 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Monodelphis_domestica

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	115	4	187538285	187538500	1	1	23.6%	79.2%	216	0.67 / 0.82 = 0.82	noComparaHits: HOXD1	3
p2	---	gapq	ENSP00000331741	HOXB2	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q2	+/+	ENSP00000308252	HOXB3	q2	q2	388	4	187515862	187518908	1	2	92.3%	53.5%	1218	0.5 / 0.53 = 0.94	between_species_paralog: HOXD3	3
p4	q3	+/+	ENSP00000328928	HOXB4	q3	q3	250.3	4	187497377	187498610	1	2	94%	57.3%	663	0.43 / 0.5 = 0.86	between_species_paralog: HOXD4	2
p5	---	gapq	ENSP00000239151	HOXB5	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000225648	HOXB6	q3,q4	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q4	+/+	ENSP00000239144	HOXB8	q4	q4	248.2	4	187472546	187473868	1	2	92.2%	48.1%	876	0.41 / 0.51 = 0.8	ortholog_one2many: HOXD8	1
p10	q5	+/+	ENSP00000309439	HOXB9	q5	q5	252	4	187464529	187465943	1	2	72%	64.8%	546	0.53 / 0.51 = 1.04	between_species_paralog: HOXD9	2
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q6	+/+	ENSP00000290295	HOXB13	q6	q6	229	4	187431484	187433173	1	2	73.9%	50%	690	0.58 / 0.62 = 0.94	between_species_paralog: HOXD13	3
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 71 (region 3 for Cfam)

syntenyRegion: Canis_familiaris.glob02.14.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 14 -i 43223880:43376476 -f 11e4 some_geneID_to_be_selected
scoreRatio_sum=8.41 log_scoreRatio_sum=-0.67 focal_scoreRatio_sum=2.38
AlnScore=4053 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Canis_familiaris

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	208.5	14	43223934	43225391	-1	2	100%	43.1%	981	0.67 / 0.67 = 1	noComparaHits: 482367	2
p2	q2	+/+	ENSP00000331741	HOXB2	q2	q2	307	14	43230194	43231949	-1	2	99.4%	48.3%	1212	0.55 / 0.56 = 0.98	between_species_paralog: 609592	2
p3	q3	+/+	ENSP00000308252	HOXB3	q3	q3	403	14	43237520	43240239	-1	2	100%	48%	1467	0.5 / 0.52 = 0.96	ortholog_one2many: HOXA3	2
p4	q4	+/+	ENSP00000328928	HOXB4	q4	q4	170	14	43258601	43258876	-1	1	36.7%	82.6%	276	0.43 / 0.66 = 0.65	between_species_paralog: Q9XT68_CANFA	4
p5	q5	+/+	ENSP00000239151	HOXB5	q5	q5	314	14	43271375	43273168	-1	2	100%	58.5%	816	0.4 / 0.42 = 0.95	between_species_paralog: HOXA5	2
p6	q6	+/+	ENSP00000225648	HOXB6	q6	q6	247	14	43275219	43277309	-1	2	100%	55.9%	702	0.47 / 0.48 = 0.98	between_species_paralog: 611383	2
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	q7	+/+	ENSP00000239165	HOXB7	q7	q7	245	14	43284774	43286350	-1	2	92.6%	62.1%	585	0.42 / 0.44 = 0.95	between_species_paralog: 482371	2
p9	---	gapq	ENSP00000239144	HOXB8	q6,q7	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q8	+/+	ENSP00000309439	HOXB9	q8	q8	229.4	14	43293510	43295428	-1	2	93.2%	49.6%	750	0.53 / 0.55 = 0.96	between_species_paralog: 482372	2
---	q9	gapp	-	-	-	q9	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q10	+/+	ENSP00000290295	HOXB13	q10	q10	246	14	43328786	43330229	-1	2	75.4%	56%	696	0.58 / 0.59 = 0.98	between_species_paralog: 482375	2
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 72 (region 10 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob14.contig_9877.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_9877 -i 4239:26330 -f 17e3 some_geneID_to_be_selected
scoreRatio_sum=1.4 log_scoreRatio_sum=-0.72 focal_scoreRatio_sum=0.99
AlnScore=617 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000308252	HOXB3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gaps	ENSP00000328928	HOXB4	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gaps	ENSP00000239151	HOXB5	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gaps	ENSP00000225648	HOXB6	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gaps	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	q1	+/+	ENSP00000239165	HOXB7	q1	q1	134	contig_9877	4239	4511	-1	1	38.7%	70.3%	273	0.42 / 0.69 = 0.61	noComparaHits:	1
---	q2	gapp	-	-	-	q2	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000239144	HOXB8	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q3	+/+	ENSP00000309439	HOXB9	q3	q3	169	contig_9877	25719	26330	-1	1	69.2%	51.5%	612	0.53 / 0.67 = 0.79	noComparaHits:	4
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 73 (region 3 for Xtro)

syntenyRegion: Xenopus_tropicalis.glob03.scaffold_163.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Xenopus_tropicalis -l scaffold_163 -i 534745:661780 -f 95e3 some_geneID_to_be_selected
scoreRatio_sum=5.31 log_scoreRatio_sum=-0.74 focal_scoreRatio_sum=2.03
AlnScore=2416 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Xenopus_tropicalis

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	120	scaffold_163	534784	535026	-1	1	26.9%	74.4%	243	0.67 / 0.81 = 0.83	noComparaHits: hoxd1	3
p2	---	gapq	ENSP00000331741	HOXB2	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q2	+/+	ENSP00000308252	HOXB3	q2	q2	375.5	scaffold_163	567719	569313	-1	2	93.5%	51.4%	1173	0.5 / 0.55 = 0.91	between_species_paralog: HOXD3	2
p4	q3	+/+	ENSP00000328928	HOXB4	q3	q3	241.8	scaffold_163	582403	583439	-1	2	92.8%	50.2%	720	0.43 / 0.51 = 0.84	between_species_paralog: HOXD4	4
p5	---	gapq	ENSP00000239151	HOXB5	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000225648	HOXB6	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q4	+/+	ENSP00000239144	HOXB8	q4	q4	245	scaffold_163	608304	609787	-1	2	86%	58.5%	609	0.41 / 0.52 = 0.79	between_species_paralog: HOXD8	3
p10	q5	+/+	ENSP00000309439	HOXB9	q5	q5	240.4	scaffold_163	619625	620793	-1	2	77.6%	58%	600	0.53 / 0.53 = 1	between_species_paralog: HOXD9	4
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q6	+/+	ENSP00000290295	HOXB13	q6	q6	229	scaffold_163	649607	652614	-1	2	91.2%	45.1%	834	0.58 / 0.62 = 0.94	between_species_paralog: HOXD13	3
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 74 (region 8 for Tnig)

syntenyRegion: Tetraodon_nigroviridis.glob02.21.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l 21 -i 2978891:3053436 -f 56e3 some_geneID_to_be_selected
scoreRatio_sum=6.34 log_scoreRatio_sum=-0.75 focal_scoreRatio_sum=1.8
AlnScore=2879 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Tetraodon_nigroviridis

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	120	21	3053092	3053406	1	1	33.2%	61.3%	315	0.67 / 0.81 = 0.83	noComparaHits: GSTENG00017483001 ; HOXA1	3
p2	q2	+/+	ENSP00000331741	HOXB2	q2	q2	294	21	3047147	3048749	1	2	99.4%	47.7%	1122	0.55 / 0.58 = 0.95	between_species_paralog: HOXA2	2
p3	q3	+/+	ENSP00000308252	HOXB3	q3	q3	419	21	3040373	3043259	1	2	93.7%	55.8%	1236	0.5 / 0.5 = 1	between_species_paralog: HOXA3 ; GSTENG00017482001	2
p4	q4	+/+	ENSP00000328928	HOXB4	q4	q4	218.2	21	3029847	3031009	1	2	91.2%	49%	648	0.43 / 0.56 = 0.77	between_species_paralog: HOXA4	4
p5	q5	+/+	ENSP00000239151	HOXB5	q5	q5	264	21	3021241	3022598	1	2	98.1%	51.8%	807	0.4 / 0.51 = 0.78	between_species_paralog: GSTENG00017481001 ; HOXA5	3
p6	---	gapq	ENSP00000225648	HOXB6	q5	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q5	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000239144	HOXB8	q5	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q6	+/+	ENSP00000309439	HOXB9	q6	q6	201.9	21	3012226	3013360	1	2	69.6%	58.9%	540	0.53 / 0.61 = 0.87	between_species_paralog: HOXA9 ; GSTENG00017478001	4
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q7	+/+	ENSP00000290295	HOXB13	q7	q7	294	21	2986964	2988118	1	2	94.4%	55.7%	822	0.58 / 0.51 = 1.14	between_species_paralog: HOXA13 ; GSTENG00017476001	2
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 75 (region 8 for Trub)

syntenyRegion: Takifugu_rubripes.glob02.scaffold_12.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_12 -i 2318841:2382264 -f 48e3 some_geneID_to_be_selected
scoreRatio_sum=6.31 log_scoreRatio_sum=-0.77 focal_scoreRatio_sum=1.79
AlnScore=2910 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Takifugu_rubripes

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	184.8	scaffold_12	2318841	2320139	-1	2	96%	39.7%	921	0.67 / 0.71 = 0.94	noComparaHits: NEWSINFRUG00000149627	2
p2	q2	+/+	ENSP00000331741	HOXB2	q2	q2	299	scaffold_12	2323545	2325142	-1	2	94.7%	50.7%	1053	0.55 / 0.57 = 0.96	between_species_paralog: NEWSINFRUG00000157594	2
p3	q3	+/+	ENSP00000308252	HOXB3	q3	q3	398.6	scaffold_12	2329054	2331951	-1	2	92.8%	54.5%	1224	0.5 / 0.52 = 0.96	between_species_paralog: NEWSINFRUG00000149628	2
p4	q4	+/+	ENSP00000328928	HOXB4	q4	q4	220.2	scaffold_12	2341359	2342542	-1	2	94%	50.6%	669	0.43 / 0.56 = 0.77	between_species_paralog: NEWSINFRUG00000149629	4
p5	q5	+/+	ENSP00000239151	HOXB5	q5	q5	243.3	scaffold_12	2350042	2351369	-1	2	68.4%	61.9%	576	0.4 / 0.55 = 0.73	noComparaHits:	4
p6	---	gapq	ENSP00000225648	HOXB6	q5	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q5	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000239144	HOXB8	q5	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q6	+/+	ENSP00000309439	HOXB9	q6	q6	203.9	scaffold_12	2360033	2361166	-1	2	69.6%	59.4%	540	0.53 / 0.6 = 0.88	between_species_paralog: HXA9_FUGRU	3
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q7	+/+	ENSP00000290295	HOXB13	q7	q7	279	scaffold_12	2381071	2382264	-1	2	94.4%	54.1%	819	0.58 / 0.54 = 1.07	between_species_paralog: NEWSINFRUG00000149643	3
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 76 (region 11 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob08.groupV.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l groupV -i 4094325:4626033 -f 40e4 some_geneID_to_be_selected
scoreRatio_sum=3.35 log_scoreRatio_sum=-0.78 focal_scoreRatio_sum=0.55
AlnScore=1145 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	184.5	groupV	4598424	4599467	-1	2	86.4%	45.3%	786	0.67 / 0.71 = 0.94	noComparaHits: ENSGACG00000003939	2
p2	---	gapq	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q2	+/+	ENSP00000308252	HOXB3	q2	q2	130	groupV	4600962	4601318	-1	1	26.2%	57.1%	357	0.5 / 0.84 = 0.6	noComparaHits: ENSGACG00000003942	4
p4	---	gapq	ENSP00000328928	HOXB4	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	q3	+/+	ENSP00000239151	HOXB5	q3	q3	274	groupV	4610442	4613708	-1	2	84.4%	59.2%	771	0.4 / 0.5 = 0.8	ortholog_one2many: ENSGACG00000003945	3
p6	---	gapq	ENSP00000225648	HOXB6	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000239144	HOXB8	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gapq	ENSP00000309439	HOXB9	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gapq	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	q4	+/+	ENSP00000302547	TTLL6	q4	q4	254	groupV	4625080	4626033	-1	2	35%	55.2%	690	0.78 / 0.77 = 1.01	ortholog_one2one: ENSGACG00000003950	1
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 77 (region 12 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob10.contig_6417.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_6417 -i 33864:49226 -f 12e3 some_geneID_to_be_selected
scoreRatio_sum=2.34 log_scoreRatio_sum=-0.79 focal_scoreRatio_sum=0.3
AlnScore=938 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	184.5	contig_6417	33942	34985	-1	2	86.4%	45.3%	786	0.67 / 0.71 = 0.94	noComparaHits: ENSGACG00000003939	2
p2	---	gapq	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q2	+/+	ENSP00000308252	HOXB3	q2	q2	130	contig_6417	36480	36836	-1	1	26.2%	57.1%	357	0.5 / 0.84 = 0.6	noComparaHits: ENSGACG00000003942	4
p4	---	gapq	ENSP00000328928	HOXB4	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	q3	+/+	ENSP00000239151	HOXB5	q3	q3	274	contig_6417	45960	49226	-1	2	84.4%	59.2%	771	0.4 / 0.5 = 0.8	noComparaHits:	3
p6	---	gape	ENSP00000225648	HOXB6	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gape	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gape	ENSP00000239165	HOXB7	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gape	ENSP00000239144	HOXB8	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	---	gape	ENSP00000309439	HOXB9	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 78 (region 9 for Tnig)

syntenyRegion: Tetraodon_nigroviridis.glob06.8.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l 8 -i 6607022:6627492 -f 15e3 some_geneID_to_be_selected
scoreRatio_sum=2.3 log_scoreRatio_sum=-0.8 focal_scoreRatio_sum=1.06
AlnScore=780 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Tetraodon_nigroviridis

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	q1	+/+	ENSP00000331741	HOXB2	q1	q1	248.4	8	6626031	6627492	1	2	97.8%	47%	1002	0.55 / 0.64 = 0.86	between_species_paralog: HOXAb2	3
p3	---	gapq	ENSP00000308252	HOXB3	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	---	gapq	ENSP00000328928	HOXB4	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p5	---	gapq	ENSP00000239151	HOXB5	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000225648	HOXB6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q2	+/+	ENSP00000309439	HOXB9	q2	q2	135	8	6620995	6621225	1	1	30.8%	80.5%	231	0.53 / 0.74 = 0.72	between_species_paralog: HOXAb9	5
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q3	+/+	ENSP00000290295	HOXB13	q3	q3	112	8	6607043	6607243	1	1	23.6%	77.6%	201	0.58 / 0.81 = 0.72	between_species_paralog: HOXAb13 ; GSTENG00034119001	4
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 79 (region 6 for Olat)

syntenyRegion: Oryzias_latipes.glob07.15.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Oryzias_latipes -l 15 -i 4350826:4374607 -f 18e3 some_geneID_to_be_selected
scoreRatio_sum=1.32 log_scoreRatio_sum=-0.83 focal_scoreRatio_sum=0.8
AlnScore=533 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Oryzias_latipes

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000308252	HOXB3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	q1	+/+	ENSP00000328928	HOXB4	q1	q1	147	15	4350829	4351065	-1	1	31.5%	84.8%	237	0.43 / 0.7 = 0.61	noComparaHits: Q3V5Z3_ORYLA	5
p5	---	gapq	ENSP00000239151	HOXB5	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000225648	HOXB6	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q2	+/+	ENSP00000309439	HOXB9	q2	q2	130	15	4374398	4374607	-1	1	28%	85.7%	210	0.53 / 0.75 = 0.71	noComparaHits: Q9PVR1_ORYLA	7
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 80 (region 13 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob15.groupVI.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l groupVI -i 16155941:16182581 -f 20e3 some_geneID_to_be_selected
scoreRatio_sum=1.32 log_scoreRatio_sum=-0.83 focal_scoreRatio_sum=0.8
AlnScore=521 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000308252	HOXB3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	q1	+/+	ENSP00000328928	HOXB4	q1	q1	142	groupVI	16182336	16182578	1	1	32.3%	81.5%	243	0.43 / 0.71 = 0.61	noComparaHits: ENSGACG00000011907	5
p5	---	gapq	ENSP00000239151	HOXB5	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000225648	HOXB6	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q2	+/+	ENSP00000309439	HOXB9	q2	q2	129	groupVI	16162361	16162570	1	1	28%	84.3%	210	0.53 / 0.75 = 0.71	noComparaHits: ENSGACG00000011902	8
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 81 (region 9 for Trub)

syntenyRegion: Takifugu_rubripes.glob09.scaffold_39.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_39 -i 578897:598598 -f 15e3 some_geneID_to_be_selected
scoreRatio_sum=1.31 log_scoreRatio_sum=-0.84 focal_scoreRatio_sum=0.8
AlnScore=517 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Takifugu_rubripes

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000308252	HOXB3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	q1	+/+	ENSP00000328928	HOXB4	q1	q1	140	scaffold_39	598380	598598	1	1	29.1%	84.9%	219	0.43 / 0.72 = 0.6	noComparaHits: NEWSINFRUG00000162165	5
p5	---	gapq	ENSP00000239151	HOXB5	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000225648	HOXB6	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q2	+/+	ENSP00000309439	HOXB9	q2	q2	129	scaffold_39	584702	584911	1	1	28%	84.3%	210	0.53 / 0.75 = 0.71	noComparaHits: Q4VN43_FUGRU	7
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 82 (region 10 for Tnig)

syntenyRegion: Tetraodon_nigroviridis.glob07.17.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l 17 -i 9571355:9594639 -f 17e3 some_geneID_to_be_selected
scoreRatio_sum=1.29 log_scoreRatio_sum=-0.87 focal_scoreRatio_sum=0.77
AlnScore=486 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Tetraodon_nigroviridis

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000308252	HOXB3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	q1	+/+	ENSP00000328928	HOXB4	q1	q1	143	17	9594403	9594639	1	1	31.5%	82.3%	237	0.43 / 0.71 = 0.61	noComparaHits: HOXDb4 ; GSTENG00018723001	5
p5	---	gapq	ENSP00000239151	HOXB5	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000225648	HOXB6	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q2	+/+	ENSP00000309439	HOXB9	q2	q2	110	17	9576378	9576557	1	1	24%	83.3%	180	0.53 / 0.78 = 0.68	noComparaHits: GSTENG00018723001 ; HOXDb9	8
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 83 (region 5 for Mdom)

syntenyRegion: Monodelphis_domestica.glob02.8.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Monodelphis_domestica -l 8 -i 293235105:293354412 -f 89e3 some_geneID_to_be_selected
scoreRatio_sum=8.25 log_scoreRatio_sum=-0.9 focal_scoreRatio_sum=2.14
AlnScore=3853 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Monodelphis_domestica

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	205	8	293352743	293354355	1	2	100%	41.8%	1023	0.67 / 0.67 = 1	noComparaHits: HOXA1	2
p2	q2	+/+	ENSP00000331741	HOXB2	q2	q2	295	8	293345541	293347290	1	2	98%	50.5%	1101	0.55 / 0.57 = 0.96	between_species_paralog: HOXA2	2
p3	q3	+/+	ENSP00000308252	HOXB3	q3	q3	432	8	293336615	293339276	1	2	94%	51.7%	1356	0.5 / 0.48 = 1.04	between_species_paralog: HOXA3	2
p4	q4	+/+	ENSP00000328928	HOXB4	q4	q4	154.4	8	293316292	293317748	1	2	98%	36.4%	909	0.43 / 0.69 = 0.62	between_species_paralog: HOXA4	3
p5	q5	+/+	ENSP00000239151	HOXB5	q5	q5	318	8	293302329	293304252	1	2	100%	58.8%	813	0.4 / 0.41 = 0.98	between_species_paralog: HOXA5	2
p6	q6	+/+	ENSP00000225648	HOXB6	q6	q6	254	8	293298050	293300138	1	2	100%	57.3%	696	0.47 / 0.46 = 1.02	between_species_paralog: HOXA6	2
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	q7	+/+	ENSP00000239165	HOXB7	q7	q7	246	8	293287927	293289785	1	2	92.2%	61.1%	582	0.42 / 0.44 = 0.95	noComparaHits: HOXA9	2
---	q8	gapp	-	-	-	q8	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000239144	HOXB8	q7	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q9	+/+	ENSP00000309439	HOXB9	q9	q9	122	8	293268693	293268905	1	1	28.4%	77.5%	213	0.53 / 0.76 = 0.7	noComparaHits: HOXA10	3
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q10	+/+	ENSP00000290295	HOXB13	q10	q10	246	8	293235105	293236750	1	2	76.8%	54%	732	0.58 / 0.59 = 0.98	between_species_paralog: Q9TUC8_MONDO	2
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 84 (region 10 for Drer)

syntenyRegion: Danio_rerio.glob02.19.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 19 -i 13886701:13954141 -f 51e3 some_geneID_to_be_selected
scoreRatio_sum=5.14 log_scoreRatio_sum=-0.93 focal_scoreRatio_sum=1.63
AlnScore=2326 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	119	19	13953821	13954138	1	1	34.6%	62.6%	318	0.67 / 0.81 = 0.83	noComparaHits: hoxa1a	4
p2	---	gapq	ENSP00000331741	HOXB2	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q2	+/+	ENSP00000308252	HOXB3	q2	q2	364.8	19	13944458	13946294	1	2	92.8%	51.8%	1206	0.5 / 0.56 = 0.89	between_species_paralog: hoxa3a	3
p4	q3	+/+	ENSP00000328928	HOXB4	q3	q3	223.1	19	13934404	13935528	1	2	94%	50.6%	678	0.43 / 0.55 = 0.78	noComparaHits: ENSDARG00000057724 ; hoxa3a	4
p5	q4	+/+	ENSP00000239151	HOXB5	q4	q4	275	19	13926353	13927654	1	2	100%	54.2%	801	0.4 / 0.49 = 0.82	between_species_paralog: hoxa5a	3
p6	---	gapq	ENSP00000225648	HOXB6	q4	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q4	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000239144	HOXB8	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q5	+/+	ENSP00000309439	HOXB9	q5	q5	200.2	19	13916949	13917988	1	2	70.4%	57.5%	516	0.53 / 0.61 = 0.87	between_species_paralog: hoxa9a	5
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q6	+/+	ENSP00000290295	HOXB13	q6	q6	237	19	13896457	13897425	1	1	96.1%	43.9%	969	0.58 / 0.61 = 0.95	between_species_paralog: hoxa13a	4
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 85 (region 10 for Trub)

syntenyRegion: Takifugu_rubripes.glob01.scaffold_41.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_41 -i 501893:661547 -f 12e4 some_geneID_to_be_selected
scoreRatio_sum=9.29 log_scoreRatio_sum=-0.97 focal_scoreRatio_sum=2.55
AlnScore=4398 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Takifugu_rubripes

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	139	scaffold_41	661200	661535	1	1	35.9%	70.8%	336	0.67 / 0.78 = 0.86	noComparaHits: Q6IEI1_FUGRU	3
p2	q2	+/+	ENSP00000331741	HOXB2	q2	q2	340	scaffold_41	642967	645472	1	2	99.4%	50.6%	1260	0.55 / 0.51 = 1.08	ortholog_one2one: Q6IEI0_FUGRU	1
p3	q3	+/+	ENSP00000308252	HOXB3	q3	q3	480	scaffold_41	633502	637089	1	2	97%	58.1%	1434	0.5 / 0.42 = 1.19	ortholog_one2one: Q6IEH9_FUGRU	1
p4	q4	+/+	ENSP00000328928	HOXB4	q4	q4	296	scaffold_41	601559	603710	1	2	92%	62.9%	687	0.43 / 0.4 = 1.08	ortholog_one2one: HXB4_FUGRU	1
p5	q5	+/+	ENSP00000239151	HOXB5	q5	q5	283	scaffold_41	584309	586617	1	2	82.2%	66.3%	714	0.4 / 0.48 = 0.83	ortholog_one2one: NEWSINFRUG00000136624	2
p6	q6	+/+	ENSP00000225648	HOXB6	q6	q6	261	scaffold_41	578118	580641	1	2	100%	55.4%	825	0.47 / 0.45 = 1.04	ortholog_one2many: NEWSINFRUG00000165134	2
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	q7	+/+	ENSP00000239165	HOXB7	q6	q7	110	scaffold_41	555309	555488	1	1	27.6%	81.7%	180	0.42 / 0.75 = 0.56	noComparaHits: NEWSINFRUG00000136620	9
p9	q8	+/+	ENSP00000239144	HOXB8	q8	q8	236	scaffold_41	550793	551224	1	1	58%	77.8%	432	0.41 / 0.54 = 0.76	ortholog_one2one: NEWSINFRUG00000136620	2
p10	q9	+/+	ENSP00000309439	HOXB9	q9	q9	148	scaffold_41	540967	541197	1	1	30.8%	89.6%	231	0.53 / 0.71 = 0.75	noComparaHits: NEWSINFRUG00000160069	5
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q10	+/+	ENSP00000290295	HOXB13	q10	q10	295	scaffold_41	501893	503547	1	2	93.3%	56.7%	861	0.58 / 0.51 = 1.14	ortholog_one2many: NEWSINFRUG00000163355	1
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 86 (region 5 for Hsap)

syntenyRegion: Homo_sapiens.glob04.12.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 12 -i 52619108:52735220 -f 87e3 some_geneID_to_be_selected
scoreRatio_sum=5.14 log_scoreRatio_sum=-1.02 focal_scoreRatio_sum=2.13
AlnScore=2542 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Homo_sapiens

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000308252	HOXB3	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	q1	+/+	ENSP00000328928	HOXB4	q1	q1	284	12	52733974	52735154	1	2	94.4%	59.9%	693	0.43 / 0.43 = 1	within_species_paralog: HOXC4	2
p5	q2	+/+	ENSP00000239151	HOXB5	q2	q2	184.9	12	52713174	52714528	1	2	93.7%	42.6%	648	0.4 / 0.66 = 0.61	noComparaHits: HOXC5 ; hsa-mir-615	3
p6	q3	+/+	ENSP00000225648	HOXB6	q3	q3	192.6	12	52708573	52709992	1	2	97.8%	49.4%	672	0.47 / 0.59 = 0.8	within_species_paralog: HOXC6	3
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q4	+/+	ENSP00000239144	HOXB8	q4	q4	299	12	52689336	52691360	1	2	88.9%	61.3%	687	0.41 / 0.41 = 1	within_species_paralog: HOXC8	2
p10	q5	+/+	ENSP00000309439	HOXB9	q5	q5	238.6	12	52680240	52682704	1	2	80.8%	55.3%	669	0.53 / 0.54 = 0.98	within_species_paralog: HOXC9	3
---	q6	gapp	-	-	-	q6	-	-	-	-	-	-	-	-	-	-	-	-
---	q7	gapp	-	-	-	q7	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q8	+/+	ENSP00000290295	HOXB13	q8	q8	136	12	52619108	52619716	1	1	72.5%	39%	609	0.58 / 0.77 = 0.75	within_species_paralog: HOXC13	4
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 87 (region 14 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob02.groupX.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l groupX -i 9855283:9935922 -f 60e3 some_geneID_to_be_selected
scoreRatio_sum=7.09 log_scoreRatio_sum=-1.05 focal_scoreRatio_sum=2.03
AlnScore=3318 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	188.9	groupX	9855307	9856566	-1	2	95.7%	42.1%	918	0.67 / 0.7 = 0.96	noComparaHits: ENSGACG00000007085	1
p2	q2	+/+	ENSP00000331741	HOXB2	q2	q2	299	groupX	9860329	9861991	-1	2	93%	51.7%	1017	0.55 / 0.57 = 0.96	between_species_paralog: ENSGACG00000007090	2
p3	q3	+/+	ENSP00000308252	HOXB3	q3	q3	401.9	groupX	9866274	9869714	-1	2	93.7%	53.7%	1236	0.5 / 0.52 = 0.96	between_species_paralog: ENSGACG00000007094	2
p4	q4	+/+	ENSP00000328928	HOXB4	q4	q4	238.5	groupX	9880509	9881722	-1	2	94.4%	52.7%	678	0.43 / 0.52 = 0.83	between_species_paralog: ENSGACG00000007100	3
p5	q5	+/+	ENSP00000239151	HOXB5	q5	q5	277	groupX	9889854	9891245	-1	2	98.1%	53.8%	813	0.4 / 0.49 = 0.82	between_species_paralog: ENSGACG00000007108	2
p6	---	gapq	ENSP00000225648	HOXB6	q5,q6	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	q6	+/+	ENSP00000239165	HOXB7	q6	q6	133	groupX	9896112	9896375	-1	1	37.8%	75%	264	0.42 / 0.69 = 0.61	ortholog_one2many: ENSGACG00000007112	2
p9	---	gapq	ENSP00000239144	HOXB8	q6	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q7	+/+	ENSP00000309439	HOXB9	q7	q7	211	groupX	9901374	9902621	-1	2	66%	64.1%	501	0.53 / 0.59 = 0.9	between_species_paralog: ENSGACG00000007123	3
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q8	+/+	ENSP00000290295	HOXB13	q8	q8	268	groupX	9924933	9926271	-1	2	94.4%	52.9%	807	0.58 / 0.55 = 1.05	between_species_paralog: Q9PWC4_GASAC	4
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 88 (region 15 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob09.contig_2643.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_2643 -i 4961:46955 -f 31e3 some_geneID_to_be_selected
scoreRatio_sum=4.13 log_scoreRatio_sum=-1.07 focal_scoreRatio_sum=1.82
AlnScore=2146 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000308252	HOXB3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	q1	+/+	ENSP00000328928	HOXB4	q1	q1	261	contig_2643	14618	15813	-1	2	94%	56.5%	687	0.43 / 0.47 = 0.91	noComparaHits: ENSGACG00000009421	2
p5	q2	+/+	ENSP00000239151	HOXB5	q2	q2	124	contig_2643	24707	24898	-1	1	23.8%	85.9%	192	0.4 / 0.77 = 0.52	noComparaHits: ENSGACG00000009416	6
p6	q3	+/+	ENSP00000225648	HOXB6	q3	q3	179.4	contig_2643	28355	29473	-1	2	96%	49.1%	639	0.47 / 0.62 = 0.76	noComparaHits: Q4VQD3_GASAC	1
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q4	+/+	ENSP00000239144	HOXB8	q4	q4	298	contig_2643	39207	41140	-1	2	86.8%	65.5%	672	0.41 / 0.42 = 0.98	noComparaHits: ENSGACG00000009401	1
p10	q5	+/+	ENSP00000309439	HOXB9	q5	q5	233.7	contig_2643	45188	46955	-1	2	98.8%	51%	705	0.53 / 0.55 = 0.96	noComparaHits: ENSGACG00000009396	1
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 89 (region 4 for Xtro)

syntenyRegion: Xenopus_tropicalis.glob04.scaffold_226.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Xenopus_tropicalis -l scaffold_226 -i 281000:558409 -f 21e4 some_geneID_to_be_selected
scoreRatio_sum=6.08 log_scoreRatio_sum=-1.07 focal_scoreRatio_sum=2.31
AlnScore=3032 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Xenopus_tropicalis

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q1	+/+	ENSP00000308252	HOXB3	q1	q1	274.6	scaffold_226	555793	558409	1	2	92.8%	44.9%	1152	0.5 / 0.67 = 0.75	noComparaHits: ENSXETG00000025181	4
p4	q2	+/+	ENSP00000328928	HOXB4	q2	q2	272	scaffold_226	463073	464225	1	2	94.4%	54.6%	708	0.43 / 0.45 = 0.96	between_species_paralog: HOXC4	1
p5	q3	+/+	ENSP00000239151	HOXB5	q3	q3	188.9	scaffold_226	422390	423762	1	2	93.7%	43.3%	654	0.4 / 0.65 = 0.62	noComparaHits: HOXC5	3
p6	q4	+/+	ENSP00000225648	HOXB6	q4	q4	194.9	scaffold_226	418988	420480	1	2	96.9%	50%	663	0.47 / 0.59 = 0.8	ortholog_one2many: HOXC6	3
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q4	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q5	+/+	ENSP00000239144	HOXB8	q5	q5	300	scaffold_226	396316	398530	1	2	87.2%	68.1%	648	0.41 / 0.41 = 1	between_species_paralog: hoxc8	2
p10	q6	+/+	ENSP00000309439	HOXB9	q6	q6	241.1	scaffold_226	388156	390480	1	2	75.2%	62.8%	561	0.53 / 0.53 = 1	noComparaHits: hoxc9	3
---	q7	gapp	-	-	-	q7	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q8	+/+	ENSP00000290295	HOXB13	q8	q8	233	scaffold_226	281000	284142	1	2	94%	44.8%	810	0.58 / 0.61 = 0.95	between_species_paralog: ENSXETG00000025184	2
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 90 (region 11 for Trub)

syntenyRegion: Takifugu_rubripes.glob05.scaffold_66.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_66 -i 126650:194512 -f 51e3 some_geneID_to_be_selected
scoreRatio_sum=5.12 log_scoreRatio_sum=-1.08 focal_scoreRatio_sum=2.15
AlnScore=2529 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Takifugu_rubripes

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000308252	HOXB3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	q1	+/+	ENSP00000328928	HOXB4	q1	q1	257	scaffold_66	126665	127863	-1	2	94%	55.3%	687	0.43 / 0.48 = 0.9	between_species_paralog: NEWSINFRUG00000146324	2
p5	q2	+/+	ENSP00000239151	HOXB5	q2	q2	124	scaffold_66	135780	135971	-1	1	23.8%	87.5%	192	0.4 / 0.77 = 0.52	noComparaHits: NEWSINFRUG00000146325	7
p6	q3	+/+	ENSP00000225648	HOXB6	q3	q3	182	scaffold_66	139130	140214	-1	2	96.9%	49.3%	642	0.47 / 0.61 = 0.77	between_species_paralog: O42504_FUGRU	3
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q4	+/+	ENSP00000239144	HOXB8	q4	q4	303	scaffold_66	149211	151058	-1	2	89.7%	65.2%	693	0.41 / 0.41 = 1	between_species_paralog: O42503_FUGRU	1
p10	q5	+/+	ENSP00000309439	HOXB9	q5	q5	230.7	scaffold_66	154997	156667	-1	2	74.8%	61.6%	567	0.53 / 0.55 = 0.96	between_species_paralog: HXC9_FUGRU	1
---	q6	gapp	-	-	-	q6	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q7	+/+	ENSP00000290295	HOXB13	q7	q7	240	scaffold_66	191852	194512	-1	2	92.3%	47.6%	792	0.58 / 0.6 = 0.97	between_species_paralog: NEWSINFRUG00000149366	5
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 91 (region 7 for Olat)

syntenyRegion: Oryzias_latipes.glob05.7.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Oryzias_latipes -l 7 -i 12836721:12915695 -f 59e3 some_geneID_to_be_selected
scoreRatio_sum=5.13 log_scoreRatio_sum=-1.08 focal_scoreRatio_sum=2.19
AlnScore=2538 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Oryzias_latipes

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000308252	HOXB3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	q1	+/+	ENSP00000328928	HOXB4	q1	q1	249.8	7	12904751	12906013	1	2	100%	52.1%	747	0.43 / 0.5 = 0.86	between_species_paralog: HXC4_ORYLA	2
p5	q2	+/+	ENSP00000239151	HOXB5	q2	q2	126	7	12895793	12895984	1	1	23.8%	89.1%	192	0.4 / 0.77 = 0.52	noComparaHits: Q3V607_ORYLA ; Q3V609_ORYLA	4
p6	q3	+/+	ENSP00000225648	HOXB6	q3	q3	182.1	7	12891828	12892885	1	2	96.4%	49.3%	642	0.47 / 0.61 = 0.77	noComparaHits: HXC9_ORYLA ; Q3V609_ORYLA	3
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q4	+/+	ENSP00000239144	HOXB8	q4	q4	299	7	12880841	12882567	1	2	87.2%	67.1%	648	0.41 / 0.41 = 1	noComparaHits: HXC9_ORYLA ; Q3V609_ORYLA	1
p10	q5	+/+	ENSP00000309439	HOXB9	q5	q5	240.8	7	12875582	12877173	1	2	99.2%	51.2%	708	0.53 / 0.53 = 1	between_species_paralog: HXC9_ORYLA	1
---	q6	gapp	-	-	-	q6	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q7	+/+	ENSP00000290295	HOXB13	q7	q7	245	7	12836721	12839091	1	2	91.2%	48.1%	783	0.58 / 0.59 = 0.98	between_species_paralog: Q3V600_ORYLA	4
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 92 (region 5 for Mmul)

syntenyRegion: Macaca_mulatta.glob03.12.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 12 -i 39722823:39831746 -f 82e3 some_geneID_to_be_selected
scoreRatio_sum=5.03 log_scoreRatio_sum=-1.09 focal_scoreRatio_sum=1.71
AlnScore=2194 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Macaca_mulatta

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	114	12	39831426	39831737	1	1	34.6%	58.1%	312	0.67 / 0.82 = 0.82	noComparaHits: HOXD1	3
p2	---	gapq	ENSP00000331741	HOXB2	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q2	+/+	ENSP00000308252	HOXB3	q2	q2	409	12	39810806	39813914	1	2	92.3%	54.4%	1221	0.5 / 0.51 = 0.98	between_species_paralog: HOXD3	3
p4	q3	+/+	ENSP00000328928	HOXB4	q3	q3	246.7	12	39793366	39794593	1	2	94.4%	55.5%	687	0.43 / 0.5 = 0.86	between_species_paralog: HOXD4	2
p5	---	gapq	ENSP00000239151	HOXB5	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000225648	HOXB6	q3,q4	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q4	+/+	ENSP00000239144	HOXB8	q4	q4	230.7	12	39772043	39772898	1	2	62.6%	71.4%	459	0.41 / 0.55 = 0.75	between_species_paralog: HOXD8	2
p10	q5	+/+	ENSP00000309439	HOXB9	q5	q5	122	12	39760168	39760383	1	1	28.8%	75%	216	0.53 / 0.76 = 0.7	noComparaHits: HOXD10	6
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q6	+/+	ENSP00000290295	HOXB13	q6	q6	225	12	39734026	39735562	1	2	79.9%	46%	762	0.58 / 0.63 = 0.92	between_species_paralog: HOXD13	2
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 93 (region 16 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob01.groupXI.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l groupXI -i 1484074:1740602 -f 19e4 some_geneID_to_be_selected
scoreRatio_sum=8.13 log_scoreRatio_sum=-1.1 focal_scoreRatio_sum=2.14
AlnScore=3714 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	134	groupXI	1740267	1740602	1	1	36.2%	67.3%	336	0.67 / 0.79 = 0.85	noComparaHits: ENSGACG00000005635	3
p2	q2	+/+	ENSP00000331741	HOXB2	q2	q2	323	groupXI	1720324	1722896	1	2	97.5%	47.8%	1275	0.55 / 0.53 = 1.04	ortholog_one2one: ENSGACG00000005633	1
p3	q3	+/+	ENSP00000308252	HOXB3	q3	q3	474.1	groupXI	1709563	1713575	1	3	97%	58.7%	1350	0.5 / 0.43 = 1.16	ortholog_one2one: ENSGACG00000005631	1
p4	q4	+/+	ENSP00000328928	HOXB4	q4	q4	294	groupXI	1677309	1679547	1	2	92%	62.3%	732	0.43 / 0.41 = 1.05	ortholog_one2one: ENSGACG00000005628	1
p5	q5	+/+	ENSP00000239151	HOXB5	q5	q5	280	groupXI	1659578	1661482	1	2	82.2%	63%	765	0.4 / 0.48 = 0.83	ortholog_one2one: ENSGACG00000005626	1
p6	q6	+/+	ENSP00000225648	HOXB6	q6	q6	144	groupXI	1655547	1655828	1	1	38.4%	74.5%	282	0.47 / 0.69 = 0.68	noComparaHits: ENSGACG00000005623	2
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	q7	+/+	ENSP00000239165	HOXB7	q7	q7	134	groupXI	1639386	1639658	1	1	38.7%	70.3%	273	0.42 / 0.69 = 0.61	noComparaHits:	1
---	q8	gapp	-	-	-	q8	-	-	-	-	-	-	-	-	-	-	-	-
p9	---	gapq	ENSP00000239144	HOXB8	q6	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q9	+/+	ENSP00000309439	HOXB9	q9	q9	169	groupXI	1617567	1618178	1	1	69.2%	51.5%	612	0.53 / 0.67 = 0.79	noComparaHits:	4
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q10	+/+	ENSP00000290295	HOXB13	q10	q10	288	groupXI	1524249	1526027	1	2	94%	56.4%	867	0.58 / 0.52 = 1.12	ortholog_one2many: ENSGACG00000005617	1
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 94 (region 8 for Olat)

syntenyRegion: Oryzias_latipes.glob01.8.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Oryzias_latipes -l 8 -i 24280265:24441965 -f 12e4 some_geneID_to_be_selected
scoreRatio_sum=8.01 log_scoreRatio_sum=-1.11 focal_scoreRatio_sum=2.26
AlnScore=3779 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Oryzias_latipes

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	129	8	24441627	24441965	1	1	35.5%	64%	339	0.67 / 0.79 = 0.85	noComparaHits: Q2WFU0_ORYLA	3
p2	q2	+/+	ENSP00000331741	HOXB2	q2	q2	306	8	24421469	24423633	1	2	97.2%	47.2%	1221	0.55 / 0.56 = 0.98	ortholog_one2one: Q3V621_ORYLA	1
p3	q3	+/+	ENSP00000308252	HOXB3	q3	q3	334	8	24414379	24415236	1	1	60.8%	63.5%	858	0.5 / 0.6 = 0.83	ortholog_one2one: Q3V620_ORYLA	3
p4	q4	+/+	ENSP00000328928	HOXB4	q4	q4	287	8	24381089	24383014	1	2	97.6%	58.2%	750	0.43 / 0.42 = 1.02	ortholog_one2one: Q3V619_ORYLA	1
p5	q5	+/+	ENSP00000239151	HOXB5	q5	q5	259	8	24366650	24368530	1	2	93.7%	52.3%	891	0.4 / 0.52 = 0.77	ortholog_one2one: Q9PVS0_ORYLA	3
p6	q6	+/+	ENSP00000225648	HOXB6	q6	q6	247	8	24361076	24363055	1	2	100%	51.6%	843	0.47 / 0.48 = 0.98	ortholog_one2many: Q3V617_ORYLA	2
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q6	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q7	+/+	ENSP00000239144	HOXB8	q7	q7	237	8	24328909	24329400	1	1	62.6%	70.7%	492	0.41 / 0.53 = 0.77	noComparaHits: Q3V617_ORYLA	2
---	q8	gapp	-	-	-	q8	-	-	-	-	-	-	-	-	-	-	-	-
p10	q9	+/+	ENSP00000309439	HOXB9	q9	q9	153	8	24308256	24308879	1	1	70.4%	48.1%	624	0.53 / 0.7 = 0.76	ortholog_one2one: Q3V615_ORYLA	4
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q10	+/+	ENSP00000290295	HOXB13	q10	q10	272	8	24280265	24281758	1	2	91.5%	54.9%	855	0.58 / 0.55 = 1.05	ortholog_one2one: Q3V614_ORYLA	3
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 95 (region 11 for Tnig)

syntenyRegion: Tetraodon_nigroviridis.glob04.9.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l 9 -i 4184078:4253192 -f 52e3 some_geneID_to_be_selected
scoreRatio_sum=5.04 log_scoreRatio_sum=-1.16 focal_scoreRatio_sum=2.24
AlnScore=2441 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Tetraodon_nigroviridis

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000308252	HOXB3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	q1	+/+	ENSP00000328928	HOXB4	q1	q1	254	9	4251930	4253192	1	2	100%	51.9%	759	0.43 / 0.49 = 0.88	between_species_paralog: GSTENG00028038001 ; HOXC4	2
p5	---	gapq	ENSP00000239151	HOXB5	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	q2	+/+	ENSP00000225648	HOXB6	q3	q2	116	9	4243949	4244164	1	1	32.6%	75.3%	216	0.47 / 0.75 = 0.63	noComparaHits: HOXC5 ; GSTENG00028038001	5
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	q3	+/+	ENSP00000239165	HOXB7	q3	q3	128	9	4240506	4240787	1	1	38.7%	67%	282	0.42 / 0.7 = 0.6	noComparaHits: GSTENG00028039001 ; HOXC6	1
p9	q4	+/+	ENSP00000239144	HOXB8	q4	q4	299	9	4228016	4229940	1	2	86%	68.5%	639	0.41 / 0.41 = 1	between_species_paralog: HOXC8	1
p10	q5	+/+	ENSP00000309439	HOXB9	q5	q5	229.1	9	4222544	4224247	1	2	98.8%	50.6%	708	0.53 / 0.55 = 0.96	between_species_paralog: HOXC9 ; GSTENG00028039001	2
---	q6	gapp	-	-	-	q6	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q7	+/+	ENSP00000290295	HOXB13	q7	q7	242	9	4184078	4186692	1	2	87.7%	48.6%	744	0.58 / 0.6 = 0.97	between_species_paralog: HOXC13 ; GSTENG00028043001	3
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 96 (region 7 for Btau)

syntenyRegion: Bos_taurus.glob05.5.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Bos_taurus -l 5 -i 16729819:16874819 -f 11e4 some_geneID_to_be_selected
scoreRatio_sum=4.91 log_scoreRatio_sum=-1.28 focal_scoreRatio_sum=2.02
AlnScore=2432 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Bos_taurus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000308252	HOXB3	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	q1	+/+	ENSP00000328928	HOXB4	q1	q1	284	5	16729885	16731061	-1	2	94.4%	59.7%	696	0.43 / 0.43 = 1	ortholog_one2many: HOXC4	1
p5	q2	+/+	ENSP00000239151	HOXB5	q2	q2	183.4	5	16749689	16751039	-1	2	93.7%	42.7%	648	0.4 / 0.66 = 0.61	noComparaHits: HOXC5	3
p6	q3	+/+	ENSP00000225648	HOXB6	q3	q3	192.6	5	16754293	16755703	-1	2	97.8%	49.4%	672	0.47 / 0.59 = 0.8	between_species_paralog: Q28015_BOVIN	3
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q4	+/+	ENSP00000239144	HOXB8	q4	q4	239	5	16772492	16774359	-1	2	64.2%	70.1%	471	0.41 / 0.53 = 0.77	between_species_paralog: HOXC8	2
p10	q5	+/+	ENSP00000309439	HOXB9	q5	q5	237.8	5	16811884	16814511	-1	2	80.8%	55.3%	669	0.53 / 0.54 = 0.98	between_species_paralog: HOXC9	3
---	q6	gapp	-	-	-	q6	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q7	+/+	ENSP00000290295	HOXB13	q7	q7	137	5	16874214	16874819	-1	1	72.2%	39.2%	606	0.58 / 0.77 = 0.75	between_species_paralog: HOXC13	4
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 97 (region 17 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob03.contig_2344.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_2344 -i 19835:66189 -f 35e3 some_geneID_to_be_selected
scoreRatio_sum=5.86 log_scoreRatio_sum=-1.32 focal_scoreRatio_sum=1.5
AlnScore=2732 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	188.9	contig_2344	19859	21118	-1	2	95.7%	42.1%	918	0.67 / 0.7 = 0.96	noComparaHits: ENSGACG00000007085	1
p2	q2	+/+	ENSP00000331741	HOXB2	q2	q2	299	contig_2344	24881	26543	-1	2	93%	51.7%	1017	0.55 / 0.57 = 0.96	noComparaHits: ENSGACG00000007090	2
p3	q3	+/+	ENSP00000308252	HOXB3	q3	q3	401.9	contig_2344	30826	34266	-1	2	93.7%	53.7%	1236	0.5 / 0.52 = 0.96	noComparaHits: ENSGACG00000007094	2
p4	q4	+/+	ENSP00000328928	HOXB4	q4	q4	238.5	contig_2344	45061	46274	-1	2	94.4%	52.7%	678	0.43 / 0.52 = 0.83	noComparaHits: ENSGACG00000007100	3
p5	q5	+/+	ENSP00000239151	HOXB5	q5	q5	277	contig_2344	54406	55797	-1	2	98.1%	53.8%	813	0.4 / 0.49 = 0.82	noComparaHits: ENSGACG00000007108	2
p6	---	gapq	ENSP00000225648	HOXB6	q5,q6	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	q6	+/+	ENSP00000239165	HOXB7	q6	q6	133	contig_2344	60664	60927	-1	1	37.8%	75%	264	0.42 / 0.69 = 0.61	noComparaHits: ENSGACG00000007112	2
p9	---	gapq	ENSP00000239144	HOXB8	q6	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q7	+/+	ENSP00000309439	HOXB9	q7	q7	134	contig_2344	65926	66144	-1	1	29.2%	84.9%	219	0.53 / 0.74 = 0.72	noComparaHits:	6
p11	---	gape	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	---	gape	ENSP00000290295	HOXB13	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 98 (region 18 for Gacu)

syntenyRegion: Gasterosteus_aculeatus.glob07.groupXII.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l groupXII -i 11575519:11674071 -f 74e3 some_geneID_to_be_selected
scoreRatio_sum=5.9 log_scoreRatio_sum=-1.33 focal_scoreRatio_sum=2.22
AlnScore=2684 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gasterosteus_aculeatus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	102	groupXII	11673811	11674071	1	1	30.2%	56.3%	261	0.67 / 0.84 = 0.8	noComparaHits: ENSGACG00000009431	4
p2	---	gapq	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gapq	ENSP00000308252	HOXB3	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	q2	+/+	ENSP00000328928	HOXB4	q2	q2	261	groupXII	11647407	11648602	1	2	94%	56.5%	687	0.43 / 0.47 = 0.91	between_species_paralog: ENSGACG00000009421	2
p5	q3	+/+	ENSP00000239151	HOXB5	q3	q3	124	groupXII	11638322	11638513	1	1	23.8%	85.9%	192	0.4 / 0.77 = 0.52	noComparaHits: ENSGACG00000009416	6
p6	q4	+/+	ENSP00000225648	HOXB6	q4	q4	179.4	groupXII	11633747	11634865	1	2	96%	49.1%	639	0.47 / 0.62 = 0.76	ortholog_one2many: Q4VQD3_GASAC	1
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q4	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q5	+/+	ENSP00000239144	HOXB8	q5	q5	298	groupXII	11622080	11624013	1	2	86.8%	65.5%	672	0.41 / 0.42 = 0.98	ortholog_one2many: ENSGACG00000009401	1
p10	q6	+/+	ENSP00000309439	HOXB9	q6	q6	233.7	groupXII	11616265	11618032	1	2	98.8%	51%	705	0.53 / 0.55 = 0.96	between_species_paralog: ENSGACG00000009396	1
---	q7	gapp	-	-	-	q7	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q8	+/+	ENSP00000290295	HOXB13	q8	q8	241	groupXII	11575519	11578153	1	2	92.3%	46.9%	792	0.58 / 0.6 = 0.97	between_species_paralog: ENSGACG00000009389	5
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 99 (region 4 for Cfam)

syntenyRegion: Canis_familiaris.glob04.27.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 27 -i 4211968:4324536 -f 84e3 some_geneID_to_be_selected
scoreRatio_sum=4.84 log_scoreRatio_sum=-1.38 focal_scoreRatio_sum=1.85
AlnScore=2314 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Canis_familiaris

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000308252	HOXB3	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	q1	+/+	ENSP00000328928	HOXB4	q1	q1	285	27	4212034	4213230	-1	2	94.4%	59.9%	693	0.43 / 0.43 = 1	between_species_paralog: 486498	2
p5	q2	+/+	ENSP00000239151	HOXB5	q2	q2	187.5	27	4231293	4232665	-1	2	95.5%	44.5%	681	0.4 / 0.65 = 0.62	noComparaHits: 607625	3
p6	q3	+/+	ENSP00000225648	HOXB6	q3	q3	192.6	27	4236016	4237443	-1	2	97.8%	49.4%	672	0.47 / 0.59 = 0.8	between_species_paralog: 486499	3
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q4	+/+	ENSP00000239144	HOXB8	q4	q4	299	27	4254363	4256431	-1	2	88.1%	62.7%	723	0.41 / 0.41 = 1	between_species_paralog: 607052	2
p10	q5	+/+	ENSP00000309439	HOXB9	q5	q5	124	27	4274772	4274990	-1	1	29.2%	75.3%	219	0.53 / 0.76 = 0.7	noComparaHits: HOXC10	4
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q6	+/+	ENSP00000290295	HOXB13	q6,q7	q6	117	27	4318394	4318702	-1	1	35.9%	56.1%	309	0.58 / 0.8 = 0.72	between_species_paralog: HOXC13	4
p13	---	gapq	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gapq	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
---	q7	gape	-	-	-	q7	-	-	-	-	-	-	-	-	-	-	-	-

region 100 (region 5 for Cfam)

syntenyRegion: Canis_familiaris.glob03.36.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 36 -i 22916593:23023331 -f 80e3 some_geneID_to_be_selected
scoreRatio_sum=4.75 log_scoreRatio_sum=-1.42 focal_scoreRatio_sum=1.67
AlnScore=1984 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Canis_familiaris

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	110	36	23023017	23023322	1	1	33.9%	57.3%	306	0.67 / 0.82 = 0.82	noComparaHits:	3
p2	---	gapq	ENSP00000331741	HOXB2	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q2	+/+	ENSP00000308252	HOXB3	q2	q2	394	36	23003981	23007248	1	2	92.3%	53.2%	1218	0.5 / 0.53 = 0.94	between_species_paralog: HOXD3	3
p4	q3	+/+	ENSP00000328928	HOXB4	q3	q3	216.2	36	22987182	22988275	1	2	52.2%	77.1%	387	0.43 / 0.56 = 0.77	between_species_paralog: HOXD4	3
p5	---	gapq	ENSP00000239151	HOXB5	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000225648	HOXB6	q4	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q4	+/+	ENSP00000239144	HOXB8	q4	q4	231.7	36	22966030	22966902	1	2	62.6%	71.4%	459	0.41 / 0.54 = 0.76	between_species_paralog: HOXD8	3
p10	q5	+/+	ENSP00000309439	HOXB9	q5	q5	145	36	22958879	22959100	1	1	29.6%	89.2%	222	0.53 / 0.72 = 0.74	noComparaHits: ENSCAFG00000023404	3
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q6	+/+	ENSP00000290295	HOXB13	q6	q6	121	36	22929108	22929335	1	1	26.8%	71.1%	228	0.58 / 0.8 = 0.72	noComparaHits:	3
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 101 (region 8 for Ggal)

syntenyRegion: Gallus_gallus.glob03.7.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 7 -i 17361456:17445827 -f 63e3 some_geneID_to_be_selected
scoreRatio_sum=4.49 log_scoreRatio_sum=-1.77 focal_scoreRatio_sum=1.57
AlnScore=1763 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gallus_gallus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	107	7	17361483	17361710	-1	1	26.2%	65.8%	228	0.67 / 0.83 = 0.81	noComparaHits: HM1_CHICK	4
p2	---	gapq	ENSP00000331741	HOXB2	q2	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q2	+/+	ENSP00000308252	HOXB3	q2	q2	364	7	17369712	17371223	-1	1	100%	45.5%	1512	0.5 / 0.56 = 0.89	between_species_paralog: HOXD3	3
p4	q3	+/+	ENSP00000328928	HOXB4	q3	q3	162	7	17386801	17387163	-1	1	57.4%	61.4%	363	0.43 / 0.67 = 0.64	between_species_paralog: HXD4_CHICK	3
p5	---	gapq	ENSP00000239151	HOXB5	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	---	gapq	ENSP00000225648	HOXB6	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	---	gapq	ENSP00000239165	HOXB7	q3	---	-	-	-	-	-	-	-	-	-	-	-	-
p9	q4	+/+	ENSP00000239144	HOXB8	q4	q4	239.9	7	17402562	17404435	-1	2	62.6%	70.8%	489	0.41 / 0.53 = 0.77	noComparaHits: NP_997060.1	2
p10	q5	+/+	ENSP00000309439	HOXB9	q5	q5	100	7	17409431	17409745	-1	1	41.2%	45.7%	315	0.53 / 0.8 = 0.66	noComparaHits: NP_997060.1	5
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q6	+/+	ENSP00000290295	HOXB13	q6	q6	119	7	17438755	17438982	-1	1	26.8%	69.7%	228	0.58 / 0.8 = 0.72	between_species_paralog: HXD13_CHICK	4
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 102 (region 9 for Ggal)

syntenyRegion: Gallus_gallus.glob02.2.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 2 -i 32513553:32621837 -f 81e3 some_geneID_to_be_selected
scoreRatio_sum=7.49 log_scoreRatio_sum=-1.81 focal_scoreRatio_sum=2.24
AlnScore=3331 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Gallus_gallus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	130	2	32513676	32513981	-1	1	33.6%	68.6%	306	0.67 / 0.79 = 0.85	noComparaHits: Q804C5_CHICK	3
p2	q2	+/+	ENSP00000331741	HOXB2	q2	q2	112	2	32518767	32519213	-1	1	40.4%	46.7%	447	0.55 / 0.84 = 0.65	ortholog_one2many: Q804C5_CHICK	2
p3	q3	+/+	ENSP00000308252	HOXB3	q3	q3	460	2	32524757	32527370	-1	2	94%	56.8%	1230	0.5 / 0.45 = 1.11	between_species_paralog: HXD3_CHICK	2
p4	q4	+/+	ENSP00000328928	HOXB4	q4	q4	213.4	2	32544873	32546192	-1	2	46.6%	82.1%	351	0.43 / 0.57 = 0.75	between_species_paralog: HXA4_CHICK	1
p5	q5	+/+	ENSP00000239151	HOXB5	q5	q5	161	2	32558335	32558634	-1	1	37.2%	78%	300	0.4 / 0.7 = 0.57	noComparaHits: HOXA6	2
p6	q6	+/+	ENSP00000225648	HOXB6	q6	q6	226	2	32562094	32563595	-1	2	91.5%	56.1%	636	0.47 / 0.52 = 0.9	ortholog_one2many: HOXA6	1
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	q7	+/+	ENSP00000239165	HOXB7	q7	q7	215	2	32570326	32571985	-1	2	83.4%	56%	564	0.42 / 0.51 = 0.82	between_species_paralog: HXA7_CHICK	2
p9	---	gapq	ENSP00000239144	HOXB8	q7	---	-	-	-	-	-	-	-	-	-	-	-	-
p10	q8	+/+	ENSP00000309439	HOXB9	q8	q8	248	2	32579722	32581455	-1	2	89.2%	54.6%	681	0.53 / 0.52 = 1.02	between_species_paralog: HXA9_CHICK	2
---	q9	gapp	-	-	-	q9	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q10	+/+	ENSP00000290295	HOXB13	q10	q10	173	2	32621256	32621837	-1	1	65.1%	47.9%	582	0.58 / 0.71 = 0.82	noComparaHits: HXA13_CHICK	3
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 103 (region 11 for Drer)

syntenyRegion: Danio_rerio.glob05.23.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 23 -i 35634565:35764982 -f 98e3 some_geneID_to_be_selected
scoreRatio_sum=6.48 log_scoreRatio_sum=-1.87 focal_scoreRatio_sum=2.43
AlnScore=2758 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Danio_rerio

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	q1	+/+	ENSP00000355140	HOXB1	q1	q1	108	23	35764716	35764982	1	1	30.6%	62.1%	267	0.67 / 0.83 = 0.81	noComparaHits: hoxc1a	5
p2	---	gapq	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	q2	+/+	ENSP00000308252	HOXB3	q2	q2	110	23	35729227	35729544	1	1	28.3%	52.5%	318	0.5 / 0.86 = 0.58	noComparaHits: hoxc3a	4
p4	q3	+/+	ENSP00000328928	HOXB4	q3	q3	256	23	35712551	35713763	1	2	95.2%	54.1%	693	0.43 / 0.48 = 0.9	between_species_paralog: hoxc4a	2
p5	---	gapq	ENSP00000239151	HOXB5	q4	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	q4	+/+	ENSP00000225648	HOXB6	q5	q4	115	23	35701539	35701724	1	1	27.7%	85.5%	186	0.47 / 0.75 = 0.63	noComparaHits: hoxc5a	8
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	q5	+/+	ENSP00000239165	HOXB7	q5	q5	127	23	35697984	35698241	1	1	38.7%	70.9%	258	0.42 / 0.71 = 0.59	noComparaHits: hoxc6a	3
p9	q6	+/+	ENSP00000239144	HOXB8	q6	q6	300	23	35682935	35684919	1	2	99.2%	61.2%	717	0.41 / 0.41 = 1	between_species_paralog: hoxc8a	3
p10	q7	+/+	ENSP00000309439	HOXB9	q7	q7	240.1	23	35676857	35678677	1	2	98.8%	49.5%	783	0.53 / 0.53 = 1	between_species_paralog: hoxc9a	3
---	q8	gapp	-	-	-	q8	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q9	+/+	ENSP00000290295	HOXB13	q9	q9	240	23	35634565	35637149	1	2	92.6%	47.8%	795	0.58 / 0.6 = 0.97	between_species_paralog: hoxc13a	3
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 104 (region 6 for Mmul)

syntenyRegion: Macaca_mulatta.glob04.11.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 11 -i 51037121:51154547 -f 88e3 some_geneID_to_be_selected
scoreRatio_sum=4.31 log_scoreRatio_sum=-2.09 focal_scoreRatio_sum=1.96
AlnScore=1921 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Macaca_mulatta

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000308252	HOXB3	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	q1	+/+	ENSP00000328928	HOXB4	q1	q1	166	11	51154170	51154481	1	1	55.4%	63.3%	312	0.43 / 0.66 = 0.65	between_species_paralog: HOXC4	3
p5	---	gapq	ENSP00000239151	HOXB5	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p6	q2	+/+	ENSP00000225648	HOXB6	q2	q2	192.6	11	51127353	51128769	1	2	97.8%	49.4%	672	0.47 / 0.59 = 0.8	between_species_paralog: HOXC6	3
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	q3	+/+	ENSP00000239165	HOXB7	q2	q3	107	11	51109492	51109671	1	1	27.6%	80%	180	0.42 / 0.75 = 0.56	noComparaHits: HOXC8	8
p9	q4	+/+	ENSP00000239144	HOXB8	q4	q4	157	11	51107689	51108153	1	1	70%	48.9%	465	0.41 / 0.69 = 0.59	between_species_paralog: HOXC8	3
p10	q5	+/+	ENSP00000309439	HOXB9	q5	q5	239	11	51098616	51101071	1	2	98.8%	45.6%	939	0.53 / 0.54 = 0.98	between_species_paralog: HOXC9	2
---	q6	gapp	-	-	-	q6	-	-	-	-	-	-	-	-	-	-	-	-
---	q7	gapp	-	-	-	q7	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q8	+/+	ENSP00000290295	HOXB13	q8	q8	126	11	51037121	51037717	1	1	71.1%	37.9%	597	0.58 / 0.79 = 0.73	between_species_paralog: HOXC13	4
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

region 105 (region 5 for Mmus)

syntenyRegion: Mus_musculus.glob04.15.minQN4.fac2.01.blastresult [View in Ensembl]
retrieve target region: getEnsemblProteins.pl -h Mus_musculus -l 15 -i 102749366:102864077 -f 86e3 some_geneID_to_be_selected
scoreRatio_sum=5.19 log_scoreRatio_sum=-2.23 focal_scoreRatio_sum=2.1
AlnScore=2468 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000309439 (contained in p10)
TargetGenome=Mus_musculus

ref-loci	target-loci	aln	protID	geneName	optQloci	target-loci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
p1	---	gaps	ENSP00000355140	HOXB1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p2	---	gaps	ENSP00000331741	HOXB2	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p3	---	gaps	ENSP00000308252	HOXB3	q1	---	-	-	-	-	-	-	-	-	-	-	-	-
p4	q1	+/+	ENSP00000328928	HOXB4	q1	q1	261.9	15	102862757	102863924	1	2	94.4%	56.5%	699	0.43 / 0.47 = 0.91	between_species_paralog: Hoxc4	2
p5	q2	+/+	ENSP00000239151	HOXB5	q2	q2	186.5	15	102842116	102843461	1	2	95.5%	41.5%	681	0.4 / 0.65 = 0.62	noComparaHits: Hoxc5 ; mmu-mir-615	3
p6	q3	+/+	ENSP00000225648	HOXB6	q3	q3	190.6	15	102837640	102838979	1	2	91.1%	52.9%	597	0.47 / 0.6 = 0.78	between_species_paralog: Hoxc6	3
p7	---	gapq	ENSP00000365889	-	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p8	q4	+/+	ENSP00000239165	HOXB7	q3	q4	107	15	102820593	102820784	1	1	29.5%	76.6%	192	0.42 / 0.75 = 0.56	noComparaHits: Hoxc8	10
p9	q5	+/+	ENSP00000239144	HOXB8	q5	q5	158	15	102818814	102819314	1	1	74.9%	47.3%	501	0.41 / 0.69 = 0.59	between_species_paralog: Hoxc8	3
p10	q6	+/+	ENSP00000309439	HOXB9	q6	q6	237.8	15	102809687	102812152	1	2	80.8%	55.3%	669	0.53 / 0.54 = 0.98	between_species_paralog: Hoxc9	3
---	q7	gapp	-	-	-	q7	-	-	-	-	-	-	-	-	-	-	-	-
---	q8	gapp	-	-	-	q8	-	-	-	-	-	-	-	-	-	-	-	-
p11	---	gapq	ENSP00000290294	NP_115767.1	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p12	q9	+/+	ENSP00000290295	HOXB13	q9	q9	137	15	102749366	102749962	1	1	71.1%	39.8%	597	0.58 / 0.77 = 0.75	between_species_paralog: Hoxc13	4
p13	---	gape	ENSP00000302547	TTLL6	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-
p14	---	gape	ENSP00000365871	Q658K6_HUMAN	noMatch	---	-	-	-	-	-	-	-	-	-	-	-	-

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Overview on processed synteny regions for HOXB9_ENSG00000170689_2e5.protein.info

Data table for reference protein loci

Parameter used for the loci-alignments