# alignment results for HOXD9_ENSG00000128709_5e5.protein.info
# Columns are as follows
#region	alnScore	queryFile	targetGenome	targetChr	pNumber	qNumber	queryID	protID	geneName	optQloci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
##########################
1	14000	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	2	p1	q1	ENSP00000272748	ENSP00000272748	KIAA1715	q1	789.2	2	176502944	176565395	-1	8	87.1%	98.9%	1131	1 / 0.01 = 100	NOMATCH:ENSG00000144320(ENSP00000272748 [LNP_HUMAN]);	1
1	14000	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	2	p2	q2	ENSP00000312385	ENSP00000312385	EVX2	q2	815	2	176653084	176656750	-1	3	100%	80.6%	1578	0.62 / 0.01 = 62	within_species_paralog:ENSG00000174279_(ENSP00000312385 [EVX2_HUMAN])	1
1	14000	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	2	p3	q3	ENSP00000249505	ENSP00000249505	HOXD13	q3	648	2	176665889	176667701	1	2	100%	94.9%	1008	0.61 / 0.01 = 61	within_species_paralog:ENSG00000128714_(ENSP00000249505 [HXD13_HUMAN])	1
1	14000	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	2	p4	q4	ENSP00000303578	ENSP00000303578	HOXD12	q4	558	2	176672776	176673731	1	2	100%	93.7%	897	0.66 / 0.01 = 66	NOMATCH:ENSG00000170178(ENSP00000303578 [HXD12_HUMAN]);	1
1	14000	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	2	p5	q5	ENSP00000249504	ENSP00000249504	HOXD11	q5	556	2	176680330	176682113	1	2	100%	75.6%	1119	0.53 / 0.01 = 53	within_species_paralog:ENSG00000128713_(ENSP00000249504 [NP_067015.2])	1
1	14000	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	2	p6	q6	ENSP00000249501	ENSP00000249501	HOXD10	q6	693	2	176689808	176692202	1	2	100%	100%	1020	0.58 / 0.01 = 58	NOMATCH:ENSG00000128710(ENSP00000249501 [HXD10_HUMAN]);	1
1	14000	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	2	p7	q7	ENSP00000249499	ENSP00000249499	HOXD9	q7	681	2	176695773	176697146	1	2	100%	94%	1044	0.6 / 0.01 = 60	within_species_paralog:ENSG00000128709_(ENSP00000249499 [HXD9_HUMAN])	1
1	14000	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	2	p8	q8	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	q8	303	2	176701690	176702151	-1	1	100%	100%	462	1 / 0.01 = 100	NOMATCH:ENSG00000175892(ENSP00000316098 [Q8NAT4_HUMAN]);	1
1	14000	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	2	p9	q9	ENSP00000315949	ENSP00000315949	HOXD8	q9	546	2	176703341	176704583	1	2	100%	90%	870	0.49 / 0.01 = 49	within_species_paralog:ENSG00000175879_(ENSP00000315949 [HXD8_HUMAN])	1
1	14000	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	2	p10	q10	ENSP00000302548	ENSP00000302548	HOXD4	q10	550	2	176724608	176725913	1	2	100%	99.6%	768	0.51 / 0.01 = 51	within_species_paralog:ENSG00000170166_(ENSP00000302548 [HXD4_HUMAN])	1
1	14000	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	2	p11	q11	ENSP00000249440	ENSP00000249440	HOXD3	q11	917	2	176742089	176745245	1	2	100%	99.8%	1305	0.56 / 0.01 = 56	within_species_paralog:ENSG00000128652_(ENSP00000249440 [HXD3_HUMAN])	1
1	14000	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	2	p12	q12	ENSP00000328598	ENSP00000328598	HOXD1	q12	631	2	176761776	176763113	1	2	100%	93.1%	1005	0.79 / 0.01 = 79	NOMATCH:ENSG00000128645(ENSP00000364313 [Q8IZ25_HUMAN],ENSP00000328598 [HXD1_HUMAN]);	1
1	14000	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	2	p13	q13	ENSP00000346209	ENSP00000346209	-	q13	227	2	176773885	176774226	-1	1	100%	100%	342	0.15 / 0.01 = 15	within_species_paralog:ENSG00000182553_(ENSP00000346209)	1
1	14000	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	2	p14	q14	ENSP00000249442	ENSP00000249442	MTX2	q14	455	2	176896354	176910635	1	6	79.8%	97.7%	645	0.55 / 0.01 = 55	NOMATCH:ENSG00000128654(ENSP00000249442 [MTX2_HUMAN]);	1
#
##################################################################
#
2	10726	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	2	p1	q1	ENSP00000272748	ENSP00000272748	KIAA1715	q1	649.1	2	74322901	74369970	-1	8	86.2%	81.8%	1134	1 / 0.17 = 5.88	ortholog_one2one:ENSMUSG00000009207_(ENSMUSP00000066891 [Lnp])	1
2	10726	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	2	p2	q2	ENSP00000312385	ENSP00000312385	EVX2	q2	746	2	74456458	74460258	-1	3	100%	79.9%	1434	0.62 / 0.08 = 7.75	ortholog_one2one:ENSMUSG00000001815_(ENSMUSP00000001867 [Evx2])	1
2	10726	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	2	p3	q3	ENSP00000249505	ENSP00000249505	HOXD13	q3	616	2	74469173	74470972	1	2	100%	86.6%	1041	0.61 / 0.04 = 15.25	ortholog_one2one:ENSMUSG00000001819_(ENSMUSP00000001872 [Hoxd13])	1
2	10726	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	2	p4	q4	ENSP00000303578	ENSP00000303578	HOXD12	q4	445	2	74475926	74476888	1	1	100%	72.4%	963	0.66 / 0.2 = 3.3	ortholog_one2one:ENSMUSG00000001823_(ENSMUSP00000001878 [Hoxd12])	1
2	10726	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	2	p5	q5	ENSP00000249504	ENSP00000249504	HOXD11	q5	503	2	74483232	74484974	1	2	97%	75.9%	990	0.53 / 0.09 = 5.89	ortholog_one2one:ENSMUSG00000042499_(ENSMUSP00000099735 [Hoxd11])	1
2	10726	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	2	p6	q6	ENSP00000249501	ENSP00000249501	HOXD10	q6	685	2	74492819	74495204	1	2	100%	98.8%	1020	0.58 / 0.01 = 58	ortholog_one2one:ENSMUSG00000050368_(ENSMUSP00000062412 [Hoxd10])	1
2	10726	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	2	p7	q7	ENSP00000249499	ENSP00000249499	HOXD9	q7	556	2	74498895	74500257	1	2	100%	75.6%	1119	0.6 / 0.18 = 3.33	ortholog_one2one:ENSMUSG00000043342_(ENSMUSP00000058490 [Hoxd9])	1
2	10726	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	2	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
2	10726	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	2	p9	q8	ENSP00000315949	ENSP00000315949	HOXD8	q8	450	2	74506387	74507636	1	2	99%	77.1%	855	0.49 / 0.17 = 2.88	ortholog_one2one:ENSMUSG00000027102_(ENSMUSP00000019749 [Hoxd8])	1
2	10726	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	2	p10	q9	ENSP00000302548	ENSP00000302548	HOXD4	q9	494	2	74528118	74529423	1	2	100%	89.1%	777	0.51 / 0.1 = 5.1	NOMATCH:ENSMUSG00000042464(ENSMUSP00000047949 [Hoxd4],ENSMUSP00000051355 [Hoxd3],ENSMUSP00000044809 [Hoxd3]);	1
2	10726	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	2	p11	q10	ENSP00000249440	ENSP00000249440	HOXD3	q10	880	2	74544851	74547915	1	2	100%	94.6%	1323	0.56 / 0.04 = 14	ortholog_one2one:ENSMUSG00000042464_(ENSMUSP00000051355 [Hoxd3])	1
2	10726	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	2	p12	q11	ENSP00000328598	ENSP00000328598	HOXD1	q11	554	2	74563941	74565225	1	2	100%	81.4%	1002	0.79 / 0.12 = 6.58	ortholog_one2one:ENSMUSG00000042448_(ENSMUSP00000043078 [Hoxd1])	1
2	10726	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	2	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
2	10726	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	2	p14	q12	ENSP00000249442	ENSP00000249442	MTX2	q12	446	2	74660229	74677310	1	6	80.2%	87.8%	702	0.55 / 0.01 = 55	ortholog_one2one:ENSMUSG00000027099_(ENSMUSP00000028511 [Mtx2])	1
#
##################################################################
#
3	10283	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	12	p1	q1	ENSP00000272748	ENSP00000272748	KIAA1715	q1	765.2	12	39563563	39631521	-1	8	87.1%	95.8%	1131	1 / 0.03 = 33.33	ortholog_one2one:ENSMMUG00000023498_(ENSMMUP00000030935)	1
3	10283	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	12	p2	q2	ENSP00000312385	ENSP00000312385	EVX2	q2	814	12	39720761	39724430	-1	3	100%	87.1%	1434	0.62 / 0.01 = 62	ortholog_one2one:ENSMMUG00000023499_(ENSMMUP00000030936)	1
3	10283	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	12	p3	q3	ENSP00000249505	ENSP00000249505	HOXD13	q3	564	12	39733939	39735562	1	2	81.2%	99.6%	819	0.61 / 0.12 = 5.08	ortholog_one2one:ENSMMUG00000023500_(ENSMMUP00000030937)	1
3	10283	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	12	p4	q4	ENSP00000303578	ENSP00000303578	HOXD12	q4	543	12	39740821	39741776	1	2	100%	91.7%	897	0.66 / 0.02 = 33	ortholog_one2one:ENSMMUG00000023501_(ENSMMUP00000030938)	1
3	10283	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	12	p5	q5	ENSP00000249504	ENSP00000249504	HOXD11	q5	255	12	39748740	39750377	1	2	35.8%	98.3%	363	0.53 / 0.54 = 0.98	NOMATCH:	2
3	10283	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	12	p6	q6	ENSP00000249501	ENSP00000249501	HOXD10	q6	420	12	39758095	39760422	1	2	59.7%	100%	609	0.58 / 0.39 = 1.49	ortholog_one2one:ENSMMUG00000023503_(ENSMMUP00000030940)	1
3	10283	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	12	p7	q7	ENSP00000249499	ENSP00000249499	HOXD9	q7	303	12	39764093	39764701	1	1	58.5%	76%	609	0.6 / 0.55 = 1.09	NOMATCH:	1
3	10283	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	12	p8	q8	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	q8	159	12	39770022	39770417	-1	1	81.8%	65.7%	396	1 / 0.47 = 2.13	NOMATCH:ENSMMUG00000023505();	1
3	10283	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	12	p9	q9	ENSP00000315949	ENSP00000315949	HOXD8	q9	361	12	39772034	39772943	1	2	59%	99.4%	513	0.49 / 0.33 = 1.48	ortholog_one2one:ENSMMUG00000023504_(ENSMMUP00000030941)	1
3	10283	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	12	p10	q10	ENSP00000302548	ENSP00000302548	HOXD4	q10	494	12	39793366	39794671	1	2	100%	90.2%	768	0.51 / 0.1 = 5.1	ortholog_one2one:ENSMMUG00000023506_(ENSMMUP00000030942)	1
3	10283	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	12	p11	q11	ENSP00000249440	ENSP00000249440	HOXD3	q11	912	12	39810758	39813914	1	2	100%	97.3%	1335	0.56 / 0.01 = 56	ortholog_one2one:ENSMMUG00000022277_(ENSMMUP00000029320)	1
3	10283	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	12	p12	q12	ENSP00000328598	ENSP00000328598	HOXD1	q12	566	12	39830419	39831755	1	2	100%	84.6%	996	0.79 / 0.1 = 7.9	ortholog_one2one:ENSMMUG00000022276_(ENSMMUP00000029319)	1
3	10283	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	12	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
3	10283	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	12	p14	q13	ENSP00000249442	ENSP00000249442	MTX2	q13	452.3	12	39968889	39986152	1	6	79.8%	97.2%	645	0.55 / 0.01 = 55	ortholog_one2one:ENSMMUG00000010185_(ENSMMUP00000013319)	1
#
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#
4	9379	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	4	p1	q1	ENSP00000272748	ENSP00000272748	KIAA1715	q1	541.3	4	187208613	187285683	-1	6	85.3%	68.1%	1182	1 / 0.31 = 3.23	ortholog_one2many:ENSMODG00000009536_(ENSMODP00000011915)	1
4	9379	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	4	p2	q2	ENSP00000312385	ENSP00000312385	EVX2	q2	707.6	4	187417681	187421910	-1	4	83.8%	86.3%	1218	0.62 / 0.13 = 4.77	ortholog_one2one:ENSMODG00000009546_(ENSMODP00000011931)	1
4	9379	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	4	p3	q3	ENSP00000249505	ENSP00000249505	HOXD13	q3	562	4	187431202	187433173	1	2	100%	82.1%	999	0.61 / 0.13 = 4.69	ortholog_one2one:ENSMODG00000009550_(ENSMODP00000011934)	1
4	9379	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	4	p4	q4	ENSP00000303578	ENSP00000303578	HOXD12	q4	403	4	187439427	187440514	1	2	98.9%	73.8%	816	0.66 / 0.27 = 2.44	ortholog_one2one:ENSMODG00000009555_(ENSMODP00000035420)	1
4	9379	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	4	p5	q5	ENSP00000249504	ENSP00000249504	HOXD11	q5	447	4	187447938	187449659	1	2	100%	67.1%	915	0.53 / 0.19 = 2.79	ortholog_one2one:ENSMODG00000009565_(ENSMODP00000035416)	1
4	9379	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	4	p6	q6	ENSP00000249501	ENSP00000249501	HOXD10	q6	645	4	187458195	187460683	1	2	100%	92.6%	1020	0.58 / 0.06 = 9.67	ortholog_one2one:ENSMODG00000009577_(ENSMODP00000011973)	1
4	9379	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	4	p7	q7	ENSP00000249499	ENSP00000249499	HOXD9	q7	389	4	187464529	187465949	1	2	95.9%	61.6%	993	0.6 / 0.42 = 1.43	ortholog_one2one:ENSMODG00000009591_(ENSMODP00000011982)	1
4	9379	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	4	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
4	9379	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	4	p9	q8	ENSP00000315949	ENSP00000315949	HOXD8	q8	422	4	187472546	187473913	1	2	100%	71.3%	921	0.49 / 0.22 = 2.23	ortholog_one2one:ENSMODG00000009593_(ENSMODP00000011987)	1
4	9379	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	4	p10	q9	ENSP00000302548	ENSP00000302548	HOXD4	q9	385	4	187497377	187498661	1	2	100%	74.2%	714	0.51 / 0.3 = 1.7	ortholog_one2one:ENSMODG00000009598_(ENSMODP00000011991)	1
4	9379	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	4	p11	q10	ENSP00000249440	ENSP00000249440	HOXD3	q10	759	4	187515814	187518908	1	2	100%	83.5%	1299	0.56 / 0.17 = 3.29	ortholog_one2one:ENSMODG00000009600_(ENSMODP00000011994)	1
4	9379	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	4	p12	q11	ENSP00000328598	ENSP00000328598	HOXD1	q11	431	4	187537162	187538614	1	2	100%	65.2%	1014	0.79 / 0.31 = 2.55	ortholog_one2one:ENSMODG00000009604_(ENSMODP00000011998)	1
4	9379	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	4	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
4	9379	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	4	p14	q12	ENSP00000249442	ENSP00000249442	MTX2	q12	434.6	4	187709797	187739147	1	6	78.7%	89.7%	672	0.55 / 0.04 = 13.75	ortholog_one2one:ENSMODG00000009617_(ENSMODP00000012015)	1
#
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#
5	8278	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	36	p1	q1	ENSP00000272748	ENSP00000272748	KIAA1715	q1	692.8	36	22759346	22826897	-1	7	86.9%	81%	1245	1 / 0.12 = 8.33	ortholog_one2one:ENSCAFG00000013390_(ENSCAFP00000019738 [478809])	1
5	8278	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	36	p2	q2	ENSP00000312385	ENSP00000312385	EVX2	q2	681	36	22914522	22918242	-1	3	100%	69.1%	1584	0.62 / 0.16 = 3.88	ortholog_one2one:ENSCAFG00000013402_(ENSCAFP00000019743)	1
5	8278	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	36	p3	q3	ENSP00000249505	ENSP00000249505	HOXD13	q3	172	36	22928994	22929335	1	1	34.3%	77.4%	342	0.61 / 0.73 = 0.84	NOMATCH:	3
5	8278	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	36	p4	q4	ENSP00000303578	ENSP00000303578	HOXD12	q4	478	36	22934436	22935399	1	2	100%	84.5%	849	0.66 / 0.14 = 4.71	ortholog_one2one:ENSCAFG00000013429_(ENSCAFP00000031334)	1
5	8278	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	36	p5	q5	ENSP00000249504	ENSP00000249504	HOXD11	q5	439	36	22941982	22943757	1	2	100%	64.1%	1095	0.53 / 0.21 = 2.52	ortholog_one2one:ENSCAFG00000013436_(ENSCAFP00000019793)	1
5	8278	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	36	p6	q6	ENSP00000249501	ENSP00000249501	HOXD10	q6	693	36	22951611	22954001	1	2	100%	100%	1020	0.58 / 0.01 = 58	ortholog_one2one:ENSCAFG00000013447_(ENSCAFP00000019805 [488415])	1
5	8278	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	36	p7	q7	ENSP00000249499	ENSP00000249499	HOXD9	q7	268	36	22958266	22959115	1	2	48%	73.9%	540	0.6 / 0.6 = 1	NOMATCH:ENSCAFG00000023404(ENSCAFP00000031278);	1
5	8278	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	36	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
5	8278	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	36	p9	q8	ENSP00000315949	ENSP00000315949	HOXD8	q8	404	36	22965937	22966947	1	2	68.6%	94.5%	597	0.49 / 0.26 = 1.88	ortholog_one2one:ENSCAFG00000013450_(ENSCAFP00000019807)	1
5	8278	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	36	p10	q9	ENSP00000302548	ENSP00000302548	HOXD4	q9	333	36	22987182	22988389	1	2	82.4%	76.4%	615	0.51 / 0.39 = 1.31	ortholog_one2one:ENSCAFG00000013452_(ENSCAFP00000019812)	1
5	8278	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	36	p11	q10	ENSP00000249440	ENSP00000249440	HOXD3	q10	531	36	23006364	23007248	1	1	71.5%	85.2%	885	0.56 / 0.42 = 1.33	ortholog_one2one:ENSCAFG00000013464_(ENSCAFP00000019824)	1
5	8278	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	36	p12	q11	ENSP00000328598	ENSP00000328598	HOXD1	q11	302	36	23022458	23023340	1	2	69.8%	69.7%	675	0.79 / 0.52 = 1.52	NOMATCH:	1
5	8278	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	36	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
5	8278	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	36	p14	q12	ENSP00000249442	ENSP00000249442	MTX2	q12	394.3	36	23143436	23161054	1	5	79.5%	87.7%	618	0.55 / 0.13 = 4.23	ortholog_one2one:ENSCAFG00000013416_(ENSCAFP00000034709 [478811])	1
#
##################################################################
#
6	8093	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	2	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
6	8093	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	2	p2	q1	ENSP00000312385	ENSP00000312385	EVX2	q1	630.7	2	17082934	17086630	1	4	77.3%	85.5%	1107	0.62 / 0.22 = 2.82	ortholog_one2one:ENSBTAG00000004312_(ENSBTAP00000005650)	1
6	8093	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	2	p3	q2	ENSP00000249505	ENSP00000249505	HOXD13	q2	596	2	17072582	17074328	-1	2	96.1%	90.7%	966	0.61 / 0.08 = 7.63	ortholog_one2one:ENSBTAG00000004313_(ENSBTAP00000005651)	1
6	8093	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	2	p4	q3	ENSP00000303578	ENSP00000303578	HOXD12	q3	490	2	17066540	17067497	-1	2	100%	84.6%	873	0.66 / 0.12 = 5.5	ortholog_one2one:ENSBTAG00000004314_(ENSBTAP00000005652)	1
6	8093	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	2	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	q4
6	8093	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	2	p6	q4	ENSP00000249501	ENSP00000249501	HOXD10	q4	693	2	17003673	17006048	-1	2	100%	94%	1092	0.58 / 0.01 = 58	ortholog_one2one:ENSBTAG00000016030_(ENSBTAP00000021334)	1
6	8093	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	2	p7	q5	ENSP00000249499	ENSP00000249499	HOXD9	q5	577	2	16998544	16999927	-1	2	100%	82.1%	1050	0.6 / 0.15 = 4	ortholog_one2one:ENSBTAG00000016033_(ENSBTAP00000021336)	1
6	8093	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	2	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
6	8093	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	2	p9	q6	ENSP00000315949	ENSP00000315949	HOXD8	q6	546	2	16991108	16992329	-1	2	100%	84.3%	930	0.49 / 0.01 = 49	ortholog_one2one:ENSBTAG00000016040_(ENSBTAP00000021341)	1
6	8093	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	2	p10	q7	ENSP00000302548	ENSP00000302548	HOXD4	q7	477	2	16969446	16970762	-1	2	100%	86.5%	777	0.51 / 0.13 = 3.92	ortholog_one2one:ENSBTAG00000020925_(ENSBTAP00000027873)	1
6	8093	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	2	p11	q8	ENSP00000249440	ENSP00000249440	HOXD3	q8	883	2	16951347	16954688	-1	2	100%	95%	1314	0.56 / 0.03 = 18.67	ortholog_one2one:ENSBTAG00000004835_(ENSBTAP00000006353)	1
6	8093	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	2	p12	q9	ENSP00000328598	ENSP00000328598	HOXD1	q9	537	2	16934939	16936242	-1	2	100%	80.9%	987	0.79 / 0.14 = 5.64	ortholog_one2one:ENSBTAG00000015840_(ENSBTAP00000021043)	1
6	8093	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	2	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
6	8093	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	2	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
7	6880	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_163	p1	q1	ENSP00000272748	ENSP00000272748	KIAA1715	q1	360.5	scaffold_163	728459	744115	1	5	54.7%	67.5%	726	1 / 0.54 = 1.85	ortholog_one2one:ENSXETG00000007570_(ENSXETP00000016481 [TEgg059c18.1])	1
7	6880	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_163	p2	q2	ENSP00000312385	ENSP00000312385	EVX2	q2	621	scaffold_163	659972	664035	1	3	98.9%	69.6%	1269	0.62 / 0.23 = 2.7	ortholog_one2one:ENSXETG00000007572_(ENSXETP00000016484)	1
7	6880	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_163	p3	q3	ENSP00000249505	ENSP00000249505	HOXD13	q3	457	scaffold_163	649601	652611	-1	2	100%	69.1%	894	0.61 / 0.29 = 2.1	ortholog_one2one:ENSXETG00000007575_(ENSXETP00000016487)	1
7	6880	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_163	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
7	6880	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_163	p5	q4	ENSP00000249504	ENSP00000249504	HOXD11	q4	327	scaffold_163	633881	635453	-1	2	95.3%	56.3%	825	0.53 / 0.41 = 1.29	NOMATCH:	1
7	6880	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_163	p6	q5	ENSP00000249501	ENSP00000249501	HOXD10	q5	592	scaffold_163	624911	627904	-1	2	100%	85.6%	1014	0.58 / 0.14 = 4.14	ortholog_one2one:ENSXETG00000007580_(ENSXETP00000016491)	1
7	6880	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_163	p7	q6	ENSP00000249499	ENSP00000249499	HOXD9	q6	293	scaffold_163	619634	620793	-1	2	94.7%	52.8%	765	0.6 / 0.56 = 1.07	ortholog_one2one:ENSXETG00000007581_(ENSXETP00000016495)	1
7	6880	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_163	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
7	6880	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_163	p9	q7	ENSP00000315949	ENSP00000315949	HOXD8	q7	282	scaffold_163	608268	609787	-1	2	95.5%	54.9%	657	0.49 / 0.48 = 1.02	ortholog_one2one:ENSXETG00000024424_(ENSXETP00000047591)	1
7	6880	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_163	p10	q8	ENSP00000302548	ENSP00000302548	HOXD4	q8	337	scaffold_163	582346	583439	-1	2	100%	63.7%	777	0.51 / 0.38 = 1.34	between_species_paralog:ENSXETG00000001799_(ENSXETP00000003765)	1
7	6880	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_163	p11	q9	ENSP00000249440	ENSP00000249440	HOXD3	q9	594	scaffold_163	567719	569361	-1	2	100%	68.2%	1248	0.56 / 0.35 = 1.6	ortholog_one2one:ENSXETG00000001800_(ENSXETP00000003766)	1
7	6880	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_163	p12	q10	ENSP00000328598	ENSP00000328598	HOXD1	q10	271	scaffold_163	534709	536091	-1	2	99.4%	48.6%	906	0.79 / 0.57 = 1.39	ortholog_one2one:ENSXETG00000001801_(ENSXETP00000003767 [hoxd1])	1
7	6880	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_163	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
7	6880	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_163	p14	q11	ENSP00000249442	ENSP00000249442	MTX2	q11	404.2	scaffold_163	476364	496298	-1	6	78.7%	84.1%	642	0.55 / 0.11 = 5	ortholog_one2one:ENSXETG00000001802_(ENSXETP00000003768 [mtx2])	1
#
##################################################################
#
8	5683	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	7	p1	q1	ENSP00000272748	ENSP00000272748	KIAA1715	q1	350	7	17486635	17512501	1	4	48.1%	77.4%	636	1 / 0.55 = 1.82	ortholog_one2one:ENSGALG00000009283_(ENSGALP00000015087 [424141])	1
8	5683	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	7	p2	q2	ENSP00000312385	ENSP00000312385	EVX2	q2	419.8	7	17444164	17447372	1	3	69.5%	69.3%	897	0.62 / 0.48 = 1.29	ortholog_one2one:ENSGALG00000020768_(ENSGALP00000032639)	1
8	5683	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	7	p3	q3	ENSP00000249505	ENSP00000249505	HOXD13	q3	221.8	7	17438755	17439670	-1	2	32.8%	93.7%	333	0.61 / 0.65 = 0.94	ortholog_one2one:ENSGALG00000009277_(ENSGALP00000015076 [HXD13_CHICK])	3
8	5683	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	7	p4	q4	ENSP00000303578	ENSP00000303578	HOXD12	q4	332	7	17431970	17433038	-1	2	97.5%	64.1%	807	0.66 / 0.4 = 1.65	ortholog_one2one:ENSGALG00000009274_(ENSGALP00000015070 [HXD12_CHICK])	1
8	5683	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	7	p5	q5	ENSP00000249504	ENSP00000249504	HOXD11	q5	160	7	17425088	17425324	-1	1	23.4%	96.2%	237	0.53 / 0.71 = 0.75	ortholog_one2one:ENSGALG00000009273_(ENSGALP00000015069 [NP_989951.1])	2
8	5683	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	7	p6	q6	ENSP00000249501	ENSP00000249501	HOXD10	q6	439	7	17416029	17416769	-1	1	72.9%	88.4%	741	0.58 / 0.36 = 1.61	ortholog_one2one:ENSGALG00000009270_(ENSGALP00000015066)	1
8	5683	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	7	p7	q7	ENSP00000249499	ENSP00000249499	HOXD9	q7	198	7	17409077	17409745	-1	1	76.9%	46.2%	669	0.6 / 0.7 = 0.86	NOMATCH:ENSGALG00000009270(ENSGALP00000037897 [NP_997060.1],ENSGALP00000015067,ENSGALP00000029264,ENSGALP00000037896,ENSGALP00000015066);	2
8	5683	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	7	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
8	5683	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	7	p9	q8	ENSP00000315949	ENSP00000315949	HOXD8	q8	323	7	17402517	17404435	-1	2	57.9%	88.7%	504	0.49 / 0.4 = 1.23	NOMATCH:ENSGALG00000009270(ENSGALP00000037897 [NP_997060.1],ENSGALP00000015067,ENSGALP00000029264,ENSGALP00000037896,ENSGALP00000015066);	1
8	5683	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	7	p10	q9	ENSP00000302548	ENSP00000302548	HOXD4	q9	196	7	17386750	17387178	-1	1	61.2%	67.5%	429	0.51 / 0.64 = 0.8	ortholog_one2one:ENSGALG00000023419_(ENSGALP00000037899 [HXD4_CHICK])	1
8	5683	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	7	p11	q10	ENSP00000249440	ENSP00000249440	HOXD3	q10	457	7	17369712	17370758	-1	1	82.4%	64.6%	1047	0.56 / 0.5 = 1.12	ortholog_one2one:ENSGALG00000023420_(ENSGALP00000037900)	1
8	5683	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	7	p12	q11	ENSP00000328598	ENSP00000328598	HOXD1	q11	147.4	7	17361528	17362441	-1	2	74.7%	37%	810	0.79 / 0.76 = 1.04	NOMATCH:ENSGALG00000009267(ENSGALP00000015062 [HM1_CHICK]);	1
8	5683	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	7	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
8	5683	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	7	p14	q12	ENSP00000249442	ENSP00000249442	MTX2	q12	412	7	17315309	17322161	-1	6	80.2%	83.4%	687	0.55 / 0.09 = 6.11	ortholog_one2one:ENSGALG00000009264_(ENSGALP00000015059 [424138])	1
#
##################################################################
#
9	4111	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	9	p1	q1	ENSP00000272748	ENSP00000272748	KIAA1715	q1	144.4	9	2338539	2354366	1	2	23.1%	60.6%	297	1 / 0.81 = 1.23	ortholog_one2many:ENSDARG00000063646_(ENSDARP00000087622)	2
9	4111	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	9	p2	q2	ENSP00000312385	ENSP00000312385	EVX2	q2	588	9	1618717	1621062	1	3	100%	66.7%	1260	0.62 / 0.27 = 2.3	ortholog_one2many:ENSDARG00000059255_(ENSDARP00000076765 [evx2])	1
9	4111	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	9	p3	q3	ENSP00000249505	ENSP00000249505	HOXD13	q3	180.3	9	1603330	1605831	-1	2	65.1%	41.9%	657	0.61 / 0.72 = 0.85	NOMATCH:ENSDARG00000059256(ENSDARP00000076768 [hoxd13a]);	6
9	4111	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	9	p4	q4	ENSP00000303578	ENSP00000303578	HOXD12	q4	119	9	1597990	1598232	-1	1	29.1%	70.4%	243	0.66 / 0.78 = 0.85	NOMATCH:ENSDARG00000059263(ENSDARP00000076775 [hoxd12a],ENSDARP00000076771 [Q4JMC8_BRARE]);	2
9	4111	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	9	p5	q5	ENSP00000249504	ENSP00000249504	HOXD11	q5	271	9	1591957	1593647	-1	2	100%	46.5%	846	0.53 / 0.51 = 1.04	between_species_paralog:ENSDARG00000059267_(ENSDARP00000076780 [hoxd11a])	1
9	4111	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	9	p6	q6	ENSP00000249501	ENSP00000249501	HOXD10	q6	472	9	1583877	1585587	-1	2	99.7%	69.7%	996	0.58 / 0.31 = 1.87	ortholog_one2many:ENSDARG00000059271_(ENSDARP00000053294 [hoxd10a])	1
9	4111	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	9	p7	q7	ENSP00000249499	ENSP00000249499	HOXD9	q7	264	9	1580195	1581290	-1	2	99.4%	47.9%	780	0.6 / 0.61 = 0.98	ortholog_one2many:ENSDARG00000059274_(ENSDARP00000076790 [hoxd9a])	1
9	4111	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	9	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
9	4111	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	9	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
9	4111	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	9	p10	q8	ENSP00000302548	ENSP00000302548	HOXD4	q8	305	9	1565271	1566370	-1	2	100%	60.9%	711	0.51 / 0.44 = 1.16	ortholog_one2one:ENSDARG00000059276_(ENSDARP00000076791 [hoxd4a])	1
9	4111	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	9	p11	q9	ENSP00000249440	ENSP00000249440	HOXD3	q9	562	9	1553343	1554792	-1	2	100%	65.1%	1242	0.56 / 0.38 = 1.47	NOMATCH:ENSDARG00000059280();ENSDARG00000059278(ENSDARP00000076793 [hoxd3a]);	1
9	4111	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	9	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
9	4111	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	9	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
9	4111	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	9	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
10	3930	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_100	p1	q1	ENSP00000272748	ENSP00000272748	KIAA1715	q1	223.8	scaffold_100	390711	394942	1	3	40.7%	49.1%	666	1 / 0.71 = 1.41	ortholog_one2one:NEWSINFRUG00000143408_(NEWSINFRUP00000152270)	2
10	3930	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_100	p2	q2	ENSP00000312385	ENSP00000312385	EVX2	q2	513	scaffold_100	378378	380283	1	3	97.9%	60.8%	1248	0.62 / 0.37 = 1.68	ortholog_one2one:NEWSINFRUG00000158421_(NEWSINFRUP00000168997)	1
10	3930	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_100	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
10	3930	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_100	p4	q3	ENSP00000303578	ENSP00000303578	HOXD12	q3	205.5	scaffold_100	371715	372790	-1	2	73.7%	54.2%	630	0.66 / 0.63 = 1.05	NOMATCH:NEWSINFRUG00000120943(NEWSINFRUP00000127656);	1
10	3930	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_100	p5	q4	ENSP00000249504	ENSP00000249504	HOXD11	q4	280	scaffold_100	366031	367381	-1	2	100%	47.7%	858	0.53 / 0.49 = 1.08	between_species_paralog:NEWSINFRUG00000162044_(NEWSINFRUP00000176376)	1
10	3930	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_100	p6	q5	ENSP00000249501	ENSP00000249501	HOXD10	q5	451	scaffold_100	361352	362879	-1	2	99.1%	68.2%	999	0.58 / 0.34 = 1.71	ortholog_one2one:NEWSINFRUG00000124778_(NEWSINFRUP00000171230)	1
10	3930	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_100	p7	q6	ENSP00000249499	ENSP00000249499	HOXD9	q6	244.6	scaffold_100	358386	359535	-1	2	68.4%	55.6%	621	0.6 / 0.64 = 0.94	ortholog_one2one:NEWSINFRUG00000124776_(NEWSINFRUP00000131834)	2
10	3930	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_100	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
10	3930	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_100	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
10	3930	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_100	p10	q7	ENSP00000302548	ENSP00000302548	HOXD4	q7	308	scaffold_100	348414	349464	-1	2	100%	62.2%	699	0.51 / 0.44 = 1.16	ortholog_one2one:NEWSINFRUG00000124775_(NEWSINFRUP00000131832)	1
10	3930	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_100	p11	q8	ENSP00000249440	ENSP00000249440	HOXD3	q8	536	scaffold_100	339085	340364	-1	2	96.3%	63.8%	1227	0.56 / 0.41 = 1.37	ortholog_one2one:NEWSINFRUG00000124774_(NEWSINFRUP00000131831)	1
10	3930	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_100	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
10	3930	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_100	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
10	3930	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_100	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
11	3922	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_5303	p1	q1	ENSP00000272748	ENSP00000272748	KIAA1715	q1	246.5	contig_5303	214375	217990	-1	3	39.7%	50%	711	1 / 0.68 = 1.47	NOMATCH:ENSGACG00000004584(ENSGACP00000006048);	2
11	3922	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_5303	p2	q2	ENSP00000312385	ENSP00000312385	EVX2	q2	539	contig_5303	229470	231529	-1	3	99.6%	61.7%	1257	0.62 / 0.33 = 1.88	NOMATCH:ENSGACG00000004579(ENSGACP00000006040);	1
11	3922	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_5303	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
11	3922	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_5303	p4	q3	ENSP00000303578	ENSP00000303578	HOXD12	q3	189.6	contig_5303	239842	241010	1	2	59.7%	56.5%	510	0.66 / 0.66 = 1	NOMATCH:ENSGACG00000004574(ENSGACP00000006035);	1
11	3922	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_5303	p5	q4	ENSP00000249504	ENSP00000249504	HOXD11	q4	280	contig_5303	245547	246912	1	2	89.6%	51.3%	783	0.53 / 0.49 = 1.08	NOMATCH:ENSGACG00000004569(ENSGACP00000006030);	1
11	3922	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_5303	p6	q5	ENSP00000249501	ENSP00000249501	HOXD10	q5	445	contig_5303	250305	252028	1	2	98.5%	67.8%	1005	0.58 / 0.35 = 1.66	NOMATCH:ENSGACG00000004564(ENSGACP00000006022);	1
11	3922	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_5303	p7	q6	ENSP00000249499	ENSP00000249499	HOXD9	q6	217.9	contig_5303	254123	255324	1	2	74.6%	49.2%	687	0.6 / 0.68 = 0.88	NOMATCH:ENSGACG00000004556(ENSGACP00000006013,ENSGACP00000006017 [Q4VQD4_GASAC]);	2
11	3922	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_5303	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
11	3922	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_5303	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
11	3922	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_5303	p10	q7	ENSP00000302548	ENSP00000302548	HOXD4	q7	304	contig_5303	266163	267256	1	2	100%	61.2%	702	0.51 / 0.44 = 1.16	NOMATCH:ENSGACG00000004551(ENSGACP00000006007);	1
11	3922	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_5303	p11	q8	ENSP00000249440	ENSP00000249440	HOXD3	q8	551	contig_5303	275876	277218	1	2	96.3%	65.7%	1218	0.56 / 0.39 = 1.44	NOMATCH:ENSGACG00000004548(ENSGACP00000006001);	1
11	3922	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_5303	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
11	3922	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_5303	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
11	3922	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_5303	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
12	3922	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXVI	p1	q1	ENSP00000272748	ENSP00000272748	KIAA1715	q1	246.5	groupXVI	9851490	9855105	1	3	39.7%	50%	711	1 / 0.68 = 1.47	ortholog_one2many:ENSGACG00000004584_(ENSGACP00000006048)	2
12	3922	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXVI	p2	q2	ENSP00000312385	ENSP00000312385	EVX2	q2	539	groupXVI	9837951	9840010	1	3	99.6%	61.7%	1257	0.62 / 0.33 = 1.88	ortholog_one2one:ENSGACG00000004579_(ENSGACP00000006040)	1
12	3922	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXVI	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
12	3922	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXVI	p4	q3	ENSP00000303578	ENSP00000303578	HOXD12	q3	189.6	groupXVI	9828470	9829638	-1	2	59.7%	56.5%	510	0.66 / 0.66 = 1	NOMATCH:ENSGACG00000004574(ENSGACP00000006035);	1
12	3922	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXVI	p5	q4	ENSP00000249504	ENSP00000249504	HOXD11	q4	280	groupXVI	9822568	9823933	-1	2	89.6%	51.3%	783	0.53 / 0.49 = 1.08	between_species_paralog:ENSGACG00000004569_(ENSGACP00000006030)	1
12	3922	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXVI	p6	q5	ENSP00000249501	ENSP00000249501	HOXD10	q5	445	groupXVI	9817452	9819175	-1	2	98.5%	67.8%	1005	0.58 / 0.35 = 1.66	ortholog_one2one:ENSGACG00000004564_(ENSGACP00000006022)	1
12	3922	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXVI	p7	q6	ENSP00000249499	ENSP00000249499	HOXD9	q6	217.9	groupXVI	9814156	9815357	-1	2	74.6%	49.2%	687	0.6 / 0.68 = 0.88	ortholog_one2one:ENSGACG00000004556_(ENSGACP00000006017 [Q4VQD4_GASAC])	2
12	3922	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXVI	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
12	3922	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXVI	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
12	3922	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXVI	p10	q7	ENSP00000302548	ENSP00000302548	HOXD4	q7	304	groupXVI	9802224	9803317	-1	2	100%	61.2%	702	0.51 / 0.44 = 1.16	ortholog_one2one:ENSGACG00000004551_(ENSGACP00000006007)	1
12	3922	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXVI	p11	q8	ENSP00000249440	ENSP00000249440	HOXD3	q8	551	groupXVI	9792262	9793604	-1	2	96.3%	65.7%	1218	0.56 / 0.39 = 1.44	ortholog_one2one:ENSGACG00000004548_(ENSGACP00000006001)	1
12	3922	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXVI	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
12	3922	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXVI	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
12	3922	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXVI	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
13	3778	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	21	p1	q1	ENSP00000272748	ENSP00000272748	KIAA1715	q1	217.6	21	24538670	24543652	-1	3	38.3%	58.5%	474	1 / 0.72 = 1.39	ortholog_one2many:ENSORLG00000017531_(ENSORLP00000021933)	2
13	3778	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	21	p2	q2	ENSP00000312385	ENSP00000312385	EVX2	q2	514	21	24590614	24592238	-1	3	75.8%	74%	1014	0.62 / 0.36 = 1.72	ortholog_one2one:ENSORLG00000017534_(ENSORLP00000021937 [Q2WFR6_ORYLA])	1
13	3778	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	21	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
13	3778	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	21	p4	q3	ENSP00000303578	ENSP00000303578	HOXD12	q3	191.1	21	24601819	24602905	1	2	57.6%	57.9%	492	0.66 / 0.65 = 1.02	NOMATCH:ENSORLG00000017536(ENSORLP00000021938 [Q3V5Z4_ORYLA]);	1
13	3778	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	21	p5	q4	ENSP00000249504	ENSP00000249504	HOXD11	q4	225.2	21	24606914	24608290	1	2	68.3%	52.4%	564	0.53 / 0.59 = 0.9	between_species_paralog:ENSORLG00000017538_(ENSORLP00000021941 [Q3V5Z5_ORYLA])	3
13	3778	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	21	p6	q5	ENSP00000249501	ENSP00000249501	HOXD10	q5	418	21	24611625	24613192	1	2	100%	63.4%	1044	0.58 / 0.39 = 1.49	ortholog_one2one:ENSORLG00000017540_(ENSORLP00000021943 [Q9PVQ4_ORYLA])	1
13	3778	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	21	p7	q6	ENSP00000249499	ENSP00000249499	HOXD9	q6	243	21	24614922	24616093	1	2	74.6%	50%	717	0.6 / 0.64 = 0.94	ortholog_one2one:ENSORLG00000017544_(ENSORLP00000021948)	2
13	3778	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	21	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
13	3778	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	21	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
13	3778	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	21	p10	q7	ENSP00000302548	ENSP00000302548	HOXD4	q7	310	21	24626722	24627802	1	2	100%	61.6%	708	0.51 / 0.43 = 1.19	ortholog_one2one:ENSORLG00000017548_(ENSORLP00000021953 [Q3V5Z8_ORYLA])	1
13	3778	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	21	p11	q8	ENSP00000249440	ENSP00000249440	HOXD3	q8	560	21	24635889	24637174	1	2	96.3%	66.7%	1203	0.56 / 0.38 = 1.47	ortholog_one2one:ENSORLG00000017546_(ENSORLP00000021951 [Q3V5Z9_ORYLA])	1
13	3778	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	21	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
13	3778	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	21	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
13	3778	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	21	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
14	3743	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	2	p1	q1	ENSP00000272748	ENSP00000272748	KIAA1715	q1	217.2	2	11128959	11132794	1	3	49.5%	43%	771	1 / 0.72 = 1.39	ortholog_one2one:GSTENG00031457001_(GSTENP00031457001 [GSTENT00031457001])	1
14	3743	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	2	p2	q2	ENSP00000312385	ENSP00000312385	EVX2	q2	447	2	11117044	11118889	1	3	92.4%	55.9%	1194	0.62 / 0.45 = 1.38	ortholog_one2many:HOXD-EVX_(HOXD-EVX [HOXD-EVX])
ortholog_one2many:GSTENG00031458001_(GSTENP00031458001 [GSTENT00031458001])	1
14	3743	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	2	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
14	3743	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	2	p4	q3	ENSP00000303578	ENSP00000303578	HOXD12	q3	197.1	2	11110368	11111376	-1	2	68.7%	53.2%	609	0.66 / 0.64 = 1.03	NOMATCH:GSTENG00031460001(GSTENP00031460001 [GSTENT00031460001]);HOXD12(HOXD12 [HOXD12]);GSTENG00031459001(GSTENP00031459001 [GSTENT00031459001]);	1
14	3743	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	2	p5	q4	ENSP00000249504	ENSP00000249504	HOXD11	q4	285	2	11104973	11106367	-1	2	93.8%	51.4%	765	0.53 / 0.48 = 1.1	between_species_paralog:HOXD11_(HOXD11 [HOXD11])	1
14	3743	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	2	p6	q5	ENSP00000249501	ENSP00000249501	HOXD10	q5	414	2	11100577	11102062	-1	2	99.1%	64.4%	993	0.58 / 0.4 = 1.45	ortholog_one2many:GSTENG00031461001_(GSTENP00031461001 [GSTENT00031461001])
ortholog_one2many:HOXD10_(HOXD10 [HOXD10])	1
14	3743	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	2	p7	q6	ENSP00000249499	ENSP00000249499	HOXD9	q6	207	2	11097829	11098947	-1	1	98.5%	39.1%	1119	0.6 / 0.69 = 0.87	ortholog_one2one:GSTENG00031462001_(GSTENP00031462001 [GSTENT00031462001])	3
14	3743	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	2	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
14	3743	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	2	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
14	3743	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	2	p10	q7	ENSP00000302548	ENSP00000302548	HOXD4	q7	316.1	2	11087917	11088977	-1	3	100%	58.1%	774	0.51 / 0.42 = 1.21	between_species_paralog:GSTENG00031463001_(GSTENP00031463001 [GSTENT00031463001])
between_species_paralog:HOXD4_(HOXD4 [HOXD4])	1
14	3743	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	2	p11	q8	ENSP00000249440	ENSP00000249440	HOXD3	q8	539	2	11075386	11076667	-1	2	96.3%	66%	1185	0.56 / 0.41 = 1.37	ortholog_one2many:GSTENG00031464001_(GSTENP00031464001 [GSTENT00031464001])
ortholog_one2many:HOXD3_(HOXD3 [HOXD3])	1
14	3743	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	2	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
14	3743	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	2	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
14	3743	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	2	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
15	3343	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_56	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
15	3343	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_56	p2	q1	ENSP00000312385	ENSP00000312385	EVX2	q1	312	scaffold_56	1323527	1325018	-1	2	66.8%	52.4%	747	0.62 / 0.61 = 1.02	between_species_paralog:ENSXETG00000000736_(ENSXETP00000001630)	2
15	3343	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_56	p3	q2	ENSP00000249505	ENSP00000249505	HOXD13	q2	278	scaffold_56	1384955	1386296	1	2	76.1%	57%	735	0.61 / 0.57 = 1.07	between_species_paralog:ENSXETG00000000734_(ENSXETP00000001626)	2
15	3343	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_56	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
15	3343	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_56	p5	q3	ENSP00000249504	ENSP00000249504	HOXD11	q3	258	scaffold_56	1397328	1399142	1	2	79%	53.9%	684	0.53 / 0.53 = 1	between_species_paralog:ENSXETG00000000732_(ENSXETP00000001623)	2
15	3343	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_56	p6	q4	ENSP00000249501	ENSP00000249501	HOXD10	q4	282	scaffold_56	1407366	1409254	1	2	98.8%	48.7%	1032	0.58 / 0.59 = 0.98	NOMATCH:ENSXETG00000000728(ENSXETP00000057394,ENSXETP00000001618);	3
15	3343	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_56	p7	q5	ENSP00000249499	ENSP00000249499	HOXD9	q5	249	scaffold_56	1415310	1416623	1	2	68.4%	55.2%	636	0.6 / 0.63 = 0.95	NOMATCH:ENSXETG00000000724(ENSXETP00000001611);	3
15	3343	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_56	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
15	3343	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_56	p9	q6	ENSP00000315949	ENSP00000315949	HOXD8	q6	114	scaffold_56	1423126	1423383	1	1	31%	62.2%	258	0.49 / 0.79 = 0.62	NOMATCH:ENSXETG00000000722(ENSXETP00000001606);	5
15	3343	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_56	p10	q9	ENSP00000302548	ENSP00000302548	HOXD4	q9	252.9	scaffold_56	1443839	1444940	1	2	94.1%	52.4%	729	0.51 / 0.54 = 0.94	ortholog_one2many:ENSXETG00000027534_(ENSXETP00000057392)	3
15	3343	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_56	p11	q10	ENSP00000249440	ENSP00000249440	HOXD3	q10	428	scaffold_56	1459721	1465438	1	2	96.3%	54.2%	1239	0.56 / 0.53 = 1.06	between_species_paralog:ENSXETG00000000717_(ENSXETP00000001602)	2
15	3343	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_56	p12	q12	ENSP00000328598	ENSP00000328598	HOXD1	q12	125	scaffold_56	1480876	1481115	1	1	25.6%	73.8%	240	0.79 / 0.8 = 0.99	NOMATCH:ENSXETG00000000715(ENSXETP00000001600 [hoxa1]);	2
15	3343	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_56	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
15	3343	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_56	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
16	3255	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_226	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
16	3255	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_226	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
16	3255	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_226	p3	q1	ENSP00000249505	ENSP00000249505	HOXD13	q1	264	scaffold_226	281096	284136	1	2	71.6%	51.3%	777	0.61 / 0.59 = 1.03	between_species_paralog:ENSXETG00000025184_(ENSXETP00000053916)	3
16	3255	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_226	p4	q2	ENSP00000303578	ENSP00000303578	HOXD12	q2	186.3	scaffold_226	343006	344320	1	2	98.2%	43.1%	774	0.66 / 0.66 = 1	NOMATCH:ENSXETG00000023470(ENSXETP00000050671);	1
16	3255	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_226	p5	q3	ENSP00000249504	ENSP00000249504	HOXD11	q3	224.7	scaffold_226	362428	364625	1	2	97.9%	41.4%	858	0.53 / 0.59 = 0.9	ortholog_one2many:ENSXETG00000023471_(ENSXETP00000050673)	3
16	3255	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_226	p6	q4	ENSP00000249501	ENSP00000249501	HOXD10	q4	302	scaffold_226	374651	378201	1	2	78.5%	56.9%	795	0.58 / 0.56 = 1.04	NOMATCH:ENSXETG00000023472(ENSXETP00000050677);	2
16	3255	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_226	p7	q5	ENSP00000249499	ENSP00000249499	HOXD9	q5	252	scaffold_226	388156	390489	1	2	76%	53.2%	765	0.6 / 0.62 = 0.97	NOMATCH:ENSXETG00000023475(ENSXETP00000050678 [hoxc9]);	2
16	3255	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_226	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
16	3255	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_226	p9	q6	ENSP00000315949	ENSP00000315949	HOXD8	q6	273	scaffold_226	396316	398530	1	2	90.7%	56.6%	648	0.49 / 0.5 = 0.98	between_species_paralog:ENSXETG00000023476_(ENSXETP00000050682 [hoxc8])	3
16	3255	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_226	p10	q9	ENSP00000302548	ENSP00000302548	HOXD4	q9	273.4	scaffold_226	463073	464312	1	2	100%	55.6%	795	0.51 / 0.5 = 1.02	between_species_paralog:ENSXETG00000023484_(ENSXETP00000050698)	2
16	3255	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_226	p11	q10	ENSP00000249440	ENSP00000249440	HOXD3	q10	303.6	scaffold_226	555793	558409	1	2	96.3%	44%	1194	0.56 / 0.66 = 0.85	NOMATCH:ENSXETG00000025181(ENSXETP00000053914);	4
16	3255	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_226	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
16	3255	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_226	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
16	3255	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_226	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
17	3177	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	7	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
17	3177	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	7	p2	q1	ENSP00000312385	ENSP00000312385	EVX2	q1	305	7	27251188	27252566	1	2	69.7%	52.3%	828	0.62 / 0.62 = 1	within_species_paralog:ENSG00000106038_(ENSP00000222761 [EVX1_HUMAN])	2
17	3177	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	7	p3	q2	ENSP00000249505	ENSP00000249505	HOXD13	q2	252	7	27204348	27205966	-1	2	90.4%	49.2%	909	0.61 / 0.61 = 1	within_species_paralog:ENSG00000106031_(ENSP00000222753 [HXA13_HUMAN])	2
17	3177	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	7	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
17	3177	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	7	p5	q3	ENSP00000249504	ENSP00000249504	HOXD11	q3	260	7	27188946	27191285	-1	2	79%	55.4%	690	0.53 / 0.53 = 1	within_species_paralog:ENSG00000005073_(ENSP00000006015 [HXA11_HUMAN])	2
17	3177	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	7	p6	q4	ENSP00000249501	ENSP00000249501	HOXD10	q4	257.4	7	27178046	27180390	-1	2	70.9%	52.2%	861	0.58 / 0.62 = 0.94	NOMATCH:ENSG00000153807(ENSP00000283921 [HXA10_HUMAN],ENSP00000371256 [Q5I0Y5_HUMAN]);	3
17	3177	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	7	p7	q5	ENSP00000249499	ENSP00000249499	HOXD9	q5	237.5	7	27169762	27171601	-1	2	85.1%	47.9%	792	0.6 / 0.65 = 0.92	within_species_paralog:ENSG00000078399_(ENSP00000343619 [HXA9_HUMAN])	3
17	3177	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	7	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
17	3177	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	7	p9	q6	ENSP00000315949	ENSP00000315949	HOXD8	q6	115	7	27161095	27161370	-1	1	32.4%	60.6%	276	0.49 / 0.78 = 0.63	NOMATCH:ENSG00000122592(ENSP00000242159 [HXA7_HUMAN]);	4
17	3177	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	7	p10	q9	ENSP00000302548	ENSP00000302548	HOXD4	q9	241.5	7	27135414	27136877	-1	2	95.3%	47.1%	945	0.51 / 0.56 = 0.91	within_species_paralog:ENSG00000197576_(ENSP00000353151 [HXA4_HUMAN])	4
17	3177	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	7	p11	q10	ENSP00000249440	ENSP00000249440	HOXD3	q10	376.8	7	27114062	27116784	-1	2	96.3%	48.5%	1338	0.56 / 0.58 = 0.97	within_species_paralog:ENSG00000105997_(ENSP00000324884 [HXA3_HUMAN])	3
17	3177	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	7	p12	q12	ENSP00000328598	ENSP00000328598	HOXD1	q12	129	7	27100659	27100940	-1	1	33.8%	61.3%	282	0.79 / 0.79 = 1	NOMATCH:ENSG00000105991(ENSP00000347851 [P49639-2],ENSP00000222713,ENSP00000343246 [HXA1_HUMAN]);	2
17	3177	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	7	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
17	3177	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	7	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
18	3171	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	6	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
18	3171	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	6	p2	q1	ENSP00000312385	ENSP00000312385	EVX2	q1	293	6	52245312	52246434	1	2	42.9%	71.4%	591	0.62 / 0.64 = 0.97	between_species_paralog:ENSMUSG00000005503_(ENSMUSP00000031787 [Evx1])	2
18	3171	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	6	p3	q2	ENSP00000249505	ENSP00000249505	HOXD13	q2	251	6	52188493	52189924	-1	2	71.9%	55%	771	0.61 / 0.61 = 1	between_species_paralog:ENSMUSG00000038203_(ENSMUSP00000039170 [Hoxa13])	2
18	3171	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	6	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
18	3171	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	6	p5	q3	ENSP00000249504	ENSP00000249504	HOXD11	q3	273	6	52172949	52175302	-1	2	87.3%	54%	777	0.53 / 0.5 = 1.06	between_species_paralog:ENSMUSG00000038210_(ENSMUSP00000040920 [Hoxa11])	2
18	3171	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	6	p6	q4	ENSP00000249501	ENSP00000249501	HOXD10	q4	250.9	6	52162092	52164457	-1	2	70.9%	50.3%	882	0.58 / 0.63 = 0.92	NOMATCH:ENSMUSG00000000938(ENSMUSP00000000962 [Hoxa10]);	3
18	3171	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	6	p7	q5	ENSP00000249499	ENSP00000249499	HOXD9	q5	239.3	6	52153842	52155687	-1	2	91.8%	46.3%	834	0.6 / 0.64 = 0.94	between_species_paralog:ENSMUSG00000038227_(ENSMUSP00000046939 [Hoxa9])	3
18	3171	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	6	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
18	3171	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	6	p9	q6	ENSP00000315949	ENSP00000315949	HOXD8	q6	112	6	52145417	52145611	-1	1	22.4%	76.9%	195	0.49 / 0.79 = 0.62	NOMATCH:ENSMUSG00000038236(ENSMUSP00000048648 [Hoxa7]);	4
18	3171	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	6	p10	q9	ENSP00000302548	ENSP00000302548	HOXD4	q9	227.1	6	52119961	52121271	-1	2	95.7%	47.6%	825	0.51 / 0.58 = 0.88	ortholog_one2many:ENSMUSG00000000942_(ENSMUSP00000098943 [Hoxa4])	4
18	3171	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	6	p11	q10	ENSP00000249440	ENSP00000249440	HOXD3	q10	395.9	6	52099526	52102232	-1	2	96.3%	49.7%	1347	0.56 / 0.56 = 1	between_species_paralog:ENSMUSG00000059723_(ENSMUSP00000043008 [Hoxa3])	3
18	3171	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	6	p12	q12	ENSP00000328598	ENSP00000328598	HOXD1	q12	131	6	52086392	52086673	-1	1	33.8%	62.2%	282	0.79 / 0.79 = 1	NOMATCH:ENSMUSG00000029844(ENSMUSP00000000964 [Hoxa1]);	2
18	3171	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	6	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
18	3171	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	6	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
19	3152	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupX	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
19	3152	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupX	p2	q1	ENSP00000312385	ENSP00000312385	EVX2	q1	299	groupX	9935674	9936730	1	2	67.6%	49.7%	798	0.62 / 0.63 = 0.98	between_species_paralog:ENSGACG00000007148_(ENSGACP00000009465)	2
19	3152	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupX	p3	q2	ENSP00000249505	ENSP00000249505	HOXD13	q2	249	groupX	9924933	9926178	-1	2	72.2%	56.9%	687	0.61 / 0.61 = 1	between_species_paralog:ENSGACG00000007134_(ENSGACP00000009457 [Q9PWC4_GASAC])	4
19	3152	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupX	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
19	3152	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupX	p5	q3	ENSP00000249504	ENSP00000249504	HOXD11	q3	251	groupX	9914075	9915690	-1	2	84.6%	50.2%	807	0.53 / 0.54 = 0.98	between_species_paralog:ENSGACG00000007132_(ENSGACP00000009442)	2
19	3152	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupX	p6	q4	ENSP00000249501	ENSP00000249501	HOXD10	q4	271	groupX	9906816	9908590	-1	2	97.9%	49.4%	1038	0.58 / 0.6 = 0.97	NOMATCH:ENSGACG00000007128(ENSGACP00000009439);	2
19	3152	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupX	p7	q5	ENSP00000249499	ENSP00000249499	HOXD9	q5	214.1	groupX	9901362	9902621	-1	2	54.4%	58.5%	537	0.6 / 0.68 = 0.88	between_species_paralog:ENSGACG00000007123_(ENSGACP00000009434)	3
19	3152	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupX	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
19	3152	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupX	p9	q6	ENSP00000315949	ENSP00000315949	HOXD8	q6	118	groupX	9896091	9896378	-1	1	32.4%	61.5%	288	0.49 / 0.78 = 0.63	NOMATCH:ENSGACG00000007112(ENSGACP00000009429);	2
19	3152	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupX	p10	q8	ENSP00000302548	ENSP00000302548	HOXD4	q8	250.6	groupX	9880458	9881722	-1	2	95.3%	53.8%	732	0.51 / 0.54 = 0.94	between_species_paralog:ENSGACG00000007100_(ENSGACP00000009408)	4
19	3152	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupX	p11	q9	ENSP00000249440	ENSP00000249440	HOXD3	q9	365.3	groupX	9866274	9869714	-1	2	96.1%	49.2%	1245	0.56 / 0.6 = 0.93	between_species_paralog:ENSGACG00000007094_(ENSGACP00000009399)	2
19	3152	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupX	p12	q11	ENSP00000328598	ENSP00000328598	HOXD1	q11	127	groupX	9855319	9855645	-1	1	32%	60.6%	327	0.79 / 0.79 = 1	NOMATCH:ENSGACG00000007085(ENSGACP00000009383);	1
19	3152	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupX	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
19	3152	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupX	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
20	3134	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	11	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
20	3134	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	11	p2	q1	ENSP00000312385	ENSP00000312385	EVX2	q1	302	11	10571579	10572561	1	2	64.5%	52%	753	0.62 / 0.62 = 1	between_species_paralog:ENSORLG00000005050_(ENSORLP00000006363 [Q2WFV6_ORYLA])	2
20	3134	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	11	p3	q2	ENSP00000249505	ENSP00000249505	HOXD13	q2	249	11	10561902	10563169	-1	2	93.7%	48.3%	795	0.61 / 0.61 = 1	between_species_paralog:ENSORLG00000005043_(ENSORLP00000006355 [Q3V628_ORYLA])	3
20	3134	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	11	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
20	3134	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	11	p5	q3	ENSP00000249504	ENSP00000249504	HOXD11	q3	256	11	10551758	10553425	-1	2	77.2%	54.7%	711	0.53 / 0.53 = 1	between_species_paralog:ENSORLG00000005037_(ENSORLP00000006348 [Q3V629_ORYLA])	1
20	3134	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	11	p6	q4	ENSP00000249501	ENSP00000249501	HOXD10	q4	273	11	10545005	10546843	-1	2	96.5%	49%	1032	0.58 / 0.6 = 0.97	NOMATCH:ENSORLG00000005034(ENSORLP00000006344 [Q3V630_ORYLA]);	2
20	3134	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	11	p7	q5	ENSP00000249499	ENSP00000249499	HOXD9	q5	213.2	11	10539576	10540702	-1	2	80.7%	43%	768	0.6 / 0.68 = 0.88	NOMATCH:ENSORLG00000005025(ENSORLP00000006332,ENSORLP00000006334 [Q3V632_ORYLA],ENSORLP00000006337 [Q9PTV6_ORYLA]);	3
20	3134	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	11	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
20	3134	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	11	p9	q6	ENSP00000315949	ENSP00000315949	HOXD8	q6	102	11	10525404	10525595	-1	1	22.1%	70.3%	192	0.49 / 0.81 = 0.6	NOMATCH:ENSORLG00000005025(ENSORLP00000006332,ENSORLP00000006334 [Q3V632_ORYLA],ENSORLP00000006337 [Q9PTV6_ORYLA]);	7
20	3134	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	11	p10	q7	ENSP00000302548	ENSP00000302548	HOXD4	q7	242.6	11	10516220	10517399	-1	2	90.2%	49.5%	777	0.51 / 0.55 = 0.93	NOMATCH:ENSORLG00000005025(ENSORLP00000006332,ENSORLP00000006334 [Q3V632_ORYLA],ENSORLP00000006337 [Q9PTV6_ORYLA]);	4
20	3134	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	11	p11	q8	ENSP00000249440	ENSP00000249440	HOXD3	q8	362.9	11	10503391	10506703	-1	2	96.1%	48.4%	1242	0.56 / 0.6 = 0.93	between_species_paralog:ENSORLG00000004996_(ENSORLP00000006298 [Q3V635_ORYLA])	2
20	3134	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	11	p12	q10	ENSP00000328598	ENSP00000328598	HOXD1	q10	130	11	10492596	10492934	-1	1	34.5%	56.6%	339	0.79 / 0.79 = 1	NOMATCH:ENSORLG00000004981(ENSORLP00000006278 [Q3V637_ORYLA]);	1
20	3134	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	11	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
20	3134	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	11	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
21	3126	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
21	3126	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
21	3126	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p3	q1	ENSP00000249505	ENSP00000249505	HOXD13	q1	274	23	35634616	35637143	1	2	79.1%	52.8%	750	0.61 / 0.57 = 1.07	between_species_paralog:ENSDARG00000019821_(ENSDARP00000025990 [hoxc13a])	1
21	3126	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p4	q2	ENSP00000303578	ENSP00000303578	HOXD12	q2	176.7	23	35645087	35646667	1	2	60.4%	54.1%	474	0.66 / 0.68 = 0.97	NOMATCH:ENSDARG00000018127(ENSDARP00000053247 [Q4PR84_BRARE]);	1
21	3126	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p5	q3	ENSP00000249504	ENSP00000249504	HOXD11	q3	223.2	23	35656454	35658679	1	2	76%	49.8%	645	0.53 / 0.59 = 0.9	between_species_paralog:ENSDARG00000028655_(ENSDARP00000035906 [hoxc11a])	4
21	3126	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p6	q4	ENSP00000249501	ENSP00000249501	HOXD10	q4	239.5	23	35665105	35667836	1	2	98.2%	44.8%	1005	0.58 / 0.65 = 0.89	NOMATCH:ENSDARG00000055147(ENSDARP00000071936 [Q4PR86_BRARE]);	4
21	3126	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p7	q5	ENSP00000249499	ENSP00000249499	HOXD9	q5	264	23	35676857	35678677	1	2	79.2%	52%	708	0.6 / 0.61 = 0.98	between_species_paralog:ENSDARG00000055143_(ENSDARP00000071933 [hoxc9a])	1
21	3126	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
21	3126	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p9	q6	ENSP00000315949	ENSP00000315949	HOXD8	q6	284	23	35682935	35684928	1	2	97.9%	54.6%	726	0.49 / 0.47 = 1.04	ortholog_one2many:ENSDARG00000055139_(ENSDARP00000071923 [hoxc8a])	1
21	3126	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p10	q9	ENSP00000302548	ENSP00000302548	HOXD4	q9	258	23	35712551	35713772	1	2	91.8%	56.8%	702	0.51 / 0.53 = 0.96	between_species_paralog:ENSDARG00000055121_(ENSDARP00000071905 [hoxc4a])	3
21	3126	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p11	q10	ENSP00000249440	ENSP00000249440	HOXD3	q10	107	23	35729107	35729475	1	1	28.5%	48.1%	369	0.56 / 0.88 = 0.64	NOMATCH:ENSDARG00000055117(ENSDARP00000071900 [hoxc3a]);	4
21	3126	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p12	q11	ENSP00000328598	ENSP00000328598	HOXD1	q11	109	23	35764719	35764910	1	1	19.5%	84.4%	192	0.79 / 0.82 = 0.96	NOMATCH:ENSDARG00000055111(ENSDARP00000071895 [hoxc1a]);	5
21	3126	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
21	3126	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
22	3024	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	14	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
22	3024	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	14	p2	q1	ENSP00000312385	ENSP00000312385	EVX2	q1	282	14	43376231	43377670	1	2	68.9%	49.4%	792	0.62 / 0.65 = 0.95	between_species_paralog:ENSCAFG00000002971_(ENSCAFP00000004404 [482376])	2
22	3024	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	14	p3	q2	ENSP00000249505	ENSP00000249505	HOXD13	q2	244	14	43328789	43330229	-1	2	70.7%	55.8%	717	0.61 / 0.62 = 0.98	ortholog_one2many:ENSCAFG00000002970_(ENSCAFP00000004403 [482375])	1
22	3024	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	14	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
22	3024	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	14	p5	q3	ENSP00000249504	ENSP00000249504	HOXD11	q3	270	14	43312987	43315443	-1	2	99.4%	49.4%	879	0.53 / 0.51 = 1.04	between_species_paralog:ENSCAFG00000002966_(ENSCAFP00000004401)	2
22	3024	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	14	p6	q4	ENSP00000249501	ENSP00000249501	HOXD10	q4	252.8	14	43301964	43304339	-1	2	70.9%	51%	864	0.58 / 0.63 = 0.92	NOMATCH:ENSCAFG00000002963(ENSCAFP00000004395 [482373]);	3
22	3024	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	14	p7	q5	ENSP00000249499	ENSP00000249499	HOXD9	q5	242.1	14	43293519	43295428	-1	2	92.1%	46.5%	837	0.6 / 0.64 = 0.94	between_species_paralog:ENSCAFG00000002961_(ENSCAFP00000004393 [482372])	2
22	3024	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	14	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
22	3024	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	14	p9	q6	ENSP00000315949	ENSP00000315949	HOXD8	q6	113	14	43284774	43284974	-1	1	23.4%	77.9%	201	0.49 / 0.79 = 0.62	NOMATCH:ENSCAFG00000002957(ENSCAFP00000004385 [482371]);	4
22	3024	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	14	p10	q9	ENSP00000302548	ENSP00000302548	HOXD4	q9	171	14	43258571	43258876	-1	1	39.2%	82.4%	306	0.51 / 0.68 = 0.75	between_species_paralog:ENSCAFG00000002948_(ENSCAFP00000004370 [Q9XT68_CANFA])	3
22	3024	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	14	p11	q10	ENSP00000249440	ENSP00000249440	HOXD3	q10	375.1	14	43237520	43240239	-1	2	96.3%	47.5%	1335	0.56 / 0.59 = 0.95	between_species_paralog:ENSCAFG00000002946_(ENSCAFP00000004367)	2
22	3024	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	14	p12	q12	ENSP00000328598	ENSP00000328598	HOXD1	q12	131	14	43223985	43224266	-1	1	33.8%	62.2%	282	0.79 / 0.79 = 1	NOMATCH:ENSCAFG00000002936(ENSCAFP00000004350 [482367]);	2
22	3024	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	14	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
22	3024	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	14	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
23	2884	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	21	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
23	2884	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	21	p2	q1	ENSP00000312385	ENSP00000312385	EVX2	q1	289	21	2978001	2979139	-1	2	68.1%	48%	840	0.62 / 0.64 = 0.97	between_species_paralog:GSTENG00017475001_(GSTENP00017475001 [GSTENT00017475001])
between_species_paralog:EVX-HOXA_(EVX-HOXA [EVX-HOXA])	2
23	2884	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	21	p3	q2	ENSP00000249505	ENSP00000249505	HOXD13	q2	130	21	2987051	2987620	1	1	58.2%	42%	570	0.61 / 0.79 = 0.77	between_species_paralog:HOXA13_(HOXA13 [HOXA13])
between_species_paralog:GSTENG00017476001_(GSTENP00017476001 [GSTENT00017476001])	3
23	2884	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	21	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
23	2884	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	21	p5	q3	ENSP00000249504	ENSP00000249504	HOXD11	q3	237.7	21	2999952	3001417	1	2	83.1%	49%	768	0.53 / 0.57 = 0.93	between_species_paralog:HOXA11_(HOXA11 [HOXA11])	2
23	2884	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	21	p6	q4	ENSP00000249501	ENSP00000249501	HOXD10	q4	276	21	3006865	3008450	1	2	98.8%	47.5%	1053	0.58 / 0.6 = 0.97	NOMATCH:GSTENG00017477001(GSTENP00017477001 [GSTENT00017477001]);HOXA10(HOXA10 [HOXA10]);	3
23	2884	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	21	p7	q5	ENSP00000249499	ENSP00000249499	HOXD9	q5	219.3	21	3012226	3013378	1	2	80.4%	46%	753	0.6 / 0.67 = 0.9	between_species_paralog:HOXA9_(HOXA9 [HOXA9])
between_species_paralog:GSTENG00017478001_(GSTENP00017478001 [GSTENT00017478001])	2
23	2884	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	21	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
23	2884	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	21	p9	q6	ENSP00000315949	ENSP00000315949	HOXD8	q6	105	21	3022350	3022565	1	1	24.8%	63.9%	216	0.49 / 0.8 = 0.61	NOMATCH:HOXA5(HOXA5 [HOXA5]);GSTENG00017481001(GSTENP00017481001 [GSTENT00017481001]);	6
23	2884	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	21	p10	q7	ENSP00000302548	ENSP00000302548	HOXD4	q7	226.9	21	3029847	3031009	1	2	87.1%	52.2%	651	0.51 / 0.58 = 0.88	ortholog_one2many:HOXA4_(HOXA4 [HOXA4])	4
23	2884	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	21	p11	q8	ENSP00000249440	ENSP00000249440	HOXD3	q8	367.3	21	3040373	3043259	1	2	96.3%	49.4%	1251	0.56 / 0.59 = 0.95	between_species_paralog:GSTENG00017482001_(GSTENP00017482001 [GSTENT00017482001])
between_species_paralog:HOXA3_(HOXA3 [HOXA3])	3
23	2884	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	21	p12	q10	ENSP00000328598	ENSP00000328598	HOXD1	q10	122	21	3053065	3053292	1	1	23.2%	75%	228	0.79 / 0.8 = 0.99	NOMATCH:HOXA1(HOXA1 [HOXA1]);GSTENG00017483001(GSTENP00017483001 [GSTENT00017483001]);	1
23	2884	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	21	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
23	2884	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	21	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
24	2813	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	8	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
24	2813	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	8	p2	q1	ENSP00000312385	ENSP00000312385	EVX2	q1	318	8	293153229	293154729	-1	2	61.8%	57.8%	690	0.62 / 0.6 = 1.03	between_species_paralog:ENSMODG00000000447_(ENSMODP00000032329)	2
24	2813	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	8	p3	q2	ENSP00000249505	ENSP00000249505	HOXD13	q2	264	8	293234916	293236747	1	2	90.4%	50.1%	942	0.61 / 0.59 = 1.03	between_species_paralog:ENSMODG00000000449_(ENSMODP00000000533 [Q9TUC8_MONDO])	2
24	2813	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	8	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
24	2813	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	8	p5	q3	ENSP00000249504	ENSP00000249504	HOXD11	q3	258	8	293253079	293255747	1	2	79%	54.2%	690	0.53 / 0.53 = 1	between_species_paralog:ENSMODG00000000453_(ENSMODP00000000537)	2
24	2813	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	8	p6	q4	ENSP00000249501	ENSP00000249501	HOXD10	q4	260	8	293266102	293268944	1	2	98.8%	41.5%	1212	0.58 / 0.62 = 0.94	NOMATCH:ENSMODG00000000463(ENSMODP00000000552,ENSMODP00000032322);	2
24	2813	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	8	p7	q5	ENSP00000249499	ENSP00000249499	HOXD9	q4	107	8	293276346	293276780	1	1	51.8%	37.3%	435	0.6 / 0.84 = 0.71	between_species_paralog:ENSMODG00000000469_(ENSMODP00000032321)	5
24	2813	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	8	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
24	2813	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	8	p9	q6	ENSP00000315949	ENSP00000315949	HOXD8	q6	115	8	293289531	293289833	1	1	31.4%	56.9%	303	0.49 / 0.78 = 0.63	NOMATCH:ENSMODG00000000469(ENSMODP00000032321,ENSMODP00000000556,ENSMODP00000032319);	2
24	2813	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	8	p10	q9	ENSP00000302548	ENSP00000302548	HOXD4	q9	157.2	8	293316292	293317763	1	2	95.3%	37.5%	924	0.51 / 0.71 = 0.72	between_species_paralog:ENSMODG00000000491_(ENSMODP00000000584)	3
24	2813	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	8	p11	q10	ENSP00000249440	ENSP00000249440	HOXD3	q10	329	8	293338320	293339276	1	1	79.4%	52.7%	957	0.56 / 0.64 = 0.88	between_species_paralog:ENSMODG00000000494_(ENSMODP00000032315)	3
24	2813	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	8	p12	q12	ENSP00000328598	ENSP00000328598	HOXD1	q12	127	8	293354020	293354274	1	1	29.3%	66.7%	255	0.79 / 0.79 = 1	NOMATCH:ENSMODG00000000507(ENSMODP00000000605);	2
24	2813	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	8	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
24	2813	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	8	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
25	2812	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	2	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
25	2812	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	2	p2	q1	ENSP00000312385	ENSP00000312385	EVX2	q1	319	2	32658369	32659744	1	2	62.2%	56.4%	708	0.62 / 0.6 = 1.03	between_species_paralog:ENSGALG00000011077_(ENSGALP00000018022)	2
25	2812	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	2	p3	q2	ENSP00000249505	ENSP00000249505	HOXD13	q2	154	2	32621241	32621825	-1	1	63.3%	44%	585	0.61 / 0.76 = 0.8	NOMATCH:ENSGALG00000023129(ENSGALP00000037022 [HXA13_CHICK]);	4
25	2812	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	2	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
25	2812	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	2	p5	q3	ENSP00000249504	ENSP00000249504	HOXD11	q3	139	2	32600653	32601117	-1	1	40.8%	54.1%	465	0.53 / 0.75 = 0.71	between_species_paralog:ENSGALG00000023130_(ENSGALP00000037025 [HXA11_CHICK])	3
25	2812	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	2	p6	q4	ENSP00000249501	ENSP00000249501	HOXD10	q4	288	2	32588549	32590928	-1	2	98.8%	47.8%	1068	0.58 / 0.58 = 1	NOMATCH:ENSGALG00000021833(ENSGALP00000034649);ENSGALG00000023132(ENSGALP00000037026);ENSGALG00000011072(ENSGALP00000018009);	2
25	2812	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	2	p7	q5	ENSP00000249499	ENSP00000249499	HOXD9	q5	232.1	2	32579731	32581455	-1	2	89.2%	45.3%	858	0.6 / 0.65 = 0.92	between_species_paralog:ENSGALG00000019640_(ENSGALP00000019381 [HXA9_CHICK])	1
25	2812	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	2	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
25	2812	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	2	p9	q6	ENSP00000315949	ENSP00000315949	HOXD8	q6	115	2	32570317	32570610	-1	1	33.1%	56.1%	294	0.49 / 0.78 = 0.63	NOMATCH:ENSGALG00000011061(ENSGALP00000017991 [HXA7_CHICK]);	4
25	2812	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	2	p10	q9	ENSP00000302548	ENSP00000302548	HOXD4	q9	172	2	32544807	32545190	-1	1	53.7%	64.5%	384	0.51 / 0.68 = 0.75	between_species_paralog:ENSGALG00000011055_(ENSGALP00000017984 [HXA4_CHICK])	2
25	2812	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	2	p11	q10	ENSP00000249440	ENSP00000249440	HOXD3	q10	451	2	32524757	32527370	-1	2	96.3%	55.6%	1242	0.56 / 0.5 = 1.12	between_species_paralog:ENSGALG00000011054_(ENSGALP00000017983 [HXD3_CHICK])	2
25	2812	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	2	p12	q11	ENSP00000328598	ENSP00000328598	HOXD1	q11	120	2	32513709	32513972	-1	1	30.2%	63.6%	264	0.79 / 0.8 = 0.99	NOMATCH:ENSGALG00000011053(ENSGALP00000037029 [Q804C5_CHICK],ENSGALP00000017982 [396055]);	3
25	2812	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	2	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
25	2812	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	2	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
26	2787	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	3	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
26	2787	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	3	p2	q1	ENSP00000312385	ENSP00000312385	EVX2	q1	327	3	98980072	98981451	-1	2	69.7%	54.8%	828	0.62 / 0.59 = 1.05	between_species_paralog:ENSMMUG00000013464_(ENSMMUP00000017697)	2
26	2787	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	3	p3	q2	ENSP00000249505	ENSP00000249505	HOXD13	q2	193.2	3	99025864	99026971	1	2	38.2%	69.8%	387	0.61 / 0.7 = 0.87	between_species_paralog:ENSMMUG00000013463_(ENSMMUP00000017696)	3
26	2787	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	3	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
26	2787	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	3	p5	q3	ENSP00000249504	ENSP00000249504	HOXD11	q3	265	3	99039974	99042317	1	2	87%	53.4%	765	0.53 / 0.52 = 1.02	between_species_paralog:ENSMMUG00000013462_(ENSMMUP00000017695)	1
26	2787	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	3	p6	q4	ENSP00000249501	ENSP00000249501	HOXD10	q4	160	3	99053148	99053396	1	1	24.4%	92.8%	249	0.58 / 0.76 = 0.76	NOMATCH:ENSMMUG00000013461(ENSMMUP00000017694);	3
26	2787	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	3	p7	q5	ENSP00000249499	ENSP00000249499	HOXD9	q5	240.6	3	99059984	99061835	1	2	85.1%	48.5%	792	0.6 / 0.64 = 0.94	between_species_paralog:ENSMMUG00000013459_(ENSMMUP00000017692)	3
26	2787	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	3	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
26	2787	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	3	p9	q6	ENSP00000315949	ENSP00000315949	HOXD8	q6	114	3	99070144	99070356	1	1	24.8%	73.6%	213	0.49 / 0.79 = 0.62	NOMATCH:ENSMMUG00000013458(ENSMMUP00000017689);	4
26	2787	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	3	p10	q8	ENSP00000302548	ENSP00000302548	HOXD4	q8	125	3	99083848	99084063	1	1	28.2%	83.3%	216	0.51 / 0.77 = 0.66	NOMATCH:ENSMMUG00000013456(ENSMMUP00000017686);	5
26	2787	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	3	p11	q9	ENSP00000249440	ENSP00000249440	HOXD3	q9	380	3	99115329	99118052	1	2	96.3%	48.1%	1338	0.56 / 0.58 = 0.97	between_species_paralog:ENSMMUG00000012813_(ENSMMUP00000016833)	2
26	2787	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	3	p12	q11	ENSP00000328598	ENSP00000328598	HOXD1	q11	129	3	99131227	99131508	1	1	33.8%	61.3%	282	0.79 / 0.79 = 1	NOMATCH:ENSMMUG00000012807(ENSMMUP00000016827,ENSMMUP00000016829);	2
26	2787	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	3	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
26	2787	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	3	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
27	2767	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_66	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
27	2767	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_66	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
27	2767	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_66	p3	q1	ENSP00000249505	ENSP00000249505	HOXD13	q1	279	scaffold_66	191852	194452	-1	2	79.7%	51.2%	801	0.61 / 0.56 = 1.09	between_species_paralog:NEWSINFRUG00000149366_(NEWSINFRUP00000158784)	1
27	2767	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_66	p4	q2	ENSP00000303578	ENSP00000303578	HOXD12	q2	181.8	scaffold_66	183469	185171	-1	2	85.6%	42.4%	705	0.66 / 0.67 = 0.99	NOMATCH:NEWSINFRUG00000164408(NEWSINFRUP00000158786);	2
27	2767	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_66	p5	q3	ENSP00000249504	ENSP00000249504	HOXD11	q3	223.2	scaffold_66	171700	173835	-1	2	76%	49%	648	0.53 / 0.59 = 0.9	between_species_paralog:NEWSINFRUG00000149367_(NEWSINFRUP00000177243)	3
27	2767	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_66	p6	q4	ENSP00000249501	ENSP00000249501	HOXD10	q4	206.6	scaffold_66	162838	165131	-1	2	69.7%	48.8%	717	0.58 / 0.7 = 0.83	NOMATCH:NEWSINFRUG00000146333(NEWSINFRUP00000155467);	3
27	2767	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_66	p7	q5	ENSP00000249499	ENSP00000249499	HOXD9	q5	251	scaffold_66	154997	156667	-1	2	66.7%	57.3%	591	0.6 / 0.63 = 0.95	between_species_paralog:NEWSINFRUG00000146331_(NEWSINFRUP00000155466 [HXC9_FUGRU])	1
27	2767	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_66	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
27	2767	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_66	p9	q6	ENSP00000315949	ENSP00000315949	HOXD8	q6	279	scaffold_66	149211	151058	-1	2	92.8%	55%	693	0.49 / 0.48 = 1.02	ortholog_one2many:NEWSINFRUG00000146328_(NEWSINFRUP00000155464 [O42503_FUGRU])	1
27	2767	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_66	p10	q9	ENSP00000302548	ENSP00000302548	HOXD4	q9	251.5	scaffold_66	126560	127863	-1	2	100%	53.5%	792	0.51 / 0.54 = 0.94	between_species_paralog:NEWSINFRUG00000146324_(NEWSINFRUP00000155456)	3
27	2767	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_66	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
27	2767	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_66	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
27	2767	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_66	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
27	2767	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_66	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
28	2766	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	9	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
28	2766	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	9	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
28	2766	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	9	p3	q1	ENSP00000249505	ENSP00000249505	HOXD13	q1	271	9	4184090	4186692	1	2	79.7%	51.5%	756	0.61 / 0.58 = 1.05	between_species_paralog:GSTENG00028043001_(GSTENP00028043001 [GSTENT00028043001])
between_species_paralog:HOXC13_(HOXC13 [HOXC13])	1
28	2766	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	9	p4	q2	ENSP00000303578	ENSP00000303578	HOXD12	q2	185.2	9	4193048	4194863	1	2	98.9%	41.2%	801	0.66 / 0.66 = 1	NOMATCH:GSTENG00028042001(GSTENP00028042001 [GSTENT00028042001]);HOXC12(HOXC12 [HOXC12]);	2
28	2766	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	9	p5	q3	ENSP00000249504	ENSP00000249504	HOXD11	q3	224.3	9	4205466	4207565	1	2	76%	49.4%	648	0.53 / 0.59 = 0.9	between_species_paralog:GSTENG00028041001_(GSTENP00028041001 [GSTENT00028041001])
between_species_paralog:HOXC11_(HOXC11 [HOXC11])	4
28	2766	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	9	p6	q4	ENSP00000249501	ENSP00000249501	HOXD10	q4	209.8	9	4213950	4216213	1	2	84.4%	43.6%	870	0.58 / 0.69 = 0.84	NOMATCH:GSTENG00028041001(GSTENP00028041001 [GSTENT00028041001]);HOXC10(HOXC10 [HOXC10]);	4
28	2766	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	9	p7	q5	ENSP00000249499	ENSP00000249499	HOXD9	q5	252	9	4222544	4224247	1	2	66.7%	57.6%	594	0.6 / 0.62 = 0.97	between_species_paralog:HOXC9_(HOXC9 [HOXC9])
between_species_paralog:GSTENG00028039001_(GSTENP00028039001 [GSTENT00028039001])	1
28	2766	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	9	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
28	2766	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	9	p9	q6	ENSP00000315949	ENSP00000315949	HOXD8	q6	276	9	4228016	4229940	1	2	89.7%	57.3%	639	0.49 / 0.49 = 1	ortholog_one2many:HOXC8_(HOXC8 [HOXC8])	1
28	2766	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	9	p10	q9	ENSP00000302548	ENSP00000302548	HOXD4	q9	252.5	9	4251930	4253138	1	2	91.8%	57%	705	0.51 / 0.54 = 0.94	between_species_paralog:HOXC4_(HOXC4 [HOXC4])
between_species_paralog:GSTENG00028038001_(GSTENP00028038001 [GSTENT00028038001])	2
28	2766	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	9	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
28	2766	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	9	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
28	2766	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	9	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
28	2766	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	9	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
29	2764	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	2	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
29	2764	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	2	p2	q1	ENSP00000312385	ENSP00000312385	EVX2	q1	588	2	12105996	12108344	1	3	100%	66.7%	1260	0.62 / 0.27 = 2.3	ortholog_one2many:ENSDARG00000057831_(ENSDARP00000075035 [evx2])	1
29	2764	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	2	p3	q2	ENSP00000249505	ENSP00000249505	HOXD13	q2	180.3	2	12090569	12093068	-1	2	65.1%	41.9%	657	0.61 / 0.72 = 0.85	NOMATCH:ENSDARG00000057837(ENSDARP00000075040 [hoxd13a]);	6
29	2764	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	2	p4	q3	ENSP00000303578	ENSP00000303578	HOXD12	q3	119	2	12085228	12085470	-1	1	29.1%	70.4%	243	0.66 / 0.78 = 0.85	NOMATCH:ENSDARG00000057847(ENSDARP00000075043 [Q4JMC8_BRARE],ENSDARP00000075046 [hoxd12a]);	2
29	2764	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	2	p5	q4	ENSP00000249504	ENSP00000249504	HOXD11	q4	271	2	12079179	12080879	-1	2	100%	46.5%	846	0.53 / 0.51 = 1.04	between_species_paralog:ENSDARG00000057852_(ENSDARP00000075052 [hoxd11a])	1
29	2764	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	2	p6	q5	ENSP00000249501	ENSP00000249501	HOXD10	q5	470	2	12071103	12072810	-1	2	99.4%	69.6%	993	0.58 / 0.32 = 1.81	ortholog_one2many:ENSDARG00000057859_(ENSDARP00000075055 [hoxd10a])	2
29	2764	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	2	p7	q6	ENSP00000249499	ENSP00000249499	HOXD9	q6	264	2	12067419	12068514	-1	2	99.4%	47.9%	780	0.6 / 0.61 = 0.98	ortholog_one2many:ENSDARG00000057865_(ENSDARP00000075065 [hoxd9a])	1
29	2764	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	2	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
29	2764	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	2	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
29	2764	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	2	p10	---	ENSP00000302548	ENSP00000302548	HOXD4	noMatch
29	2764	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	2	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
29	2764	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	2	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
29	2764	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	2	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
29	2764	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	2	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
30	2764	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	7	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
30	2764	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	7	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
30	2764	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	7	p3	q1	ENSP00000249505	ENSP00000249505	HOXD13	q1	274	7	12836772	12839091	1	2	79.7%	51.9%	756	0.61 / 0.57 = 1.07	between_species_paralog:ENSORLG00000007896_(ENSORLP00000009904 [Q3V600_ORYLA])	1
30	2764	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	7	p4	q2	ENSP00000303578	ENSP00000303578	HOXD12	q2	185.3	7	12845783	12847609	1	2	89.9%	42.5%	735	0.66 / 0.66 = 1	NOMATCH:ENSORLG00000007902(ENSORLP00000009912 [Q3V601_ORYLA]);	2
30	2764	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	7	p5	q3	ENSP00000249504	ENSP00000249504	HOXD11	q3	228.7	7	12857104	12859662	1	2	88.2%	44.3%	837	0.53 / 0.58 = 0.91	between_species_paralog:ENSORLG00000007909_(ENSORLP00000009920 [Q90ZG3_ORYLA])	2
30	2764	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	7	p6	q4	ENSP00000249501	ENSP00000249501	HOXD10	q4	205.9	7	12866025	12868489	1	2	92.6%	42.9%	921	0.58 / 0.7 = 0.83	NOMATCH:ENSORLG00000007913(ENSORLP00000009924 [Q9PVQ6_ORYLA],ENSORLP00000009925 [Q3V603_ORYLA]);	4
30	2764	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	7	p7	q5	ENSP00000249499	ENSP00000249499	HOXD9	q5	255	7	12875582	12877170	1	2	66.7%	58.7%	591	0.6 / 0.62 = 0.97	between_species_paralog:ENSORLG00000007935_(ENSORLP00000009951 [Q9PVR6_ORYLA])	1
30	2764	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	7	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
30	2764	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	7	p9	q6	ENSP00000315949	ENSP00000315949	HOXD8	q6	274	7	12880841	12882567	1	2	90.7%	56.6%	648	0.49 / 0.49 = 1	NOMATCH:ENSORLG00000007924(ENSORLP00000009938 [Q3V609_ORYLA]);ENSORLG00000007935(ENSORLP00000009951 [Q9PVR6_ORYLA],ENSORLP00000009954 [HXC9_ORYLA],ENSORLP00000009957 [Q3V605_ORYLA]);	1
30	2764	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	7	p10	q9	ENSP00000302548	ENSP00000302548	HOXD4	q9	247.4	7	12904751	12905965	1	2	91.4%	56.6%	699	0.51 / 0.55 = 0.93	between_species_paralog:ENSORLG00000007955_(ENSORLP00000009978 [HXC4_ORYLA])	3
30	2764	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	7	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
30	2764	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	7	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
30	2764	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	7	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
30	2764	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	7	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
31	2699	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	11	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
31	2699	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	11	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
31	2699	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	11	p3	q1	ENSP00000249505	ENSP00000249505	HOXD13	q1	142	11	51037199	51037708	1	1	49.9%	41.8%	510	0.61 / 0.78 = 0.78	between_species_paralog:ENSMMUG00000004542_(ENSMMUP00000006042)	4
31	2699	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	11	p4	q3	ENSP00000303578	ENSP00000303578	HOXD12	q3	197.9	11	51052937	51054562	1	2	100%	43.4%	858	0.66 / 0.64 = 1.03	NOMATCH:ENSMMUG00000004541(ENSMMUP00000006041);	2
31	2699	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	11	p5	q4	ENSP00000249504	ENSP00000249504	HOXD11	q4	235.4	11	51071372	51073476	1	2	99.1%	44.3%	843	0.53 / 0.57 = 0.93	ortholog_one2many:ENSMMUG00000000924_(ENSMMUP00000001240)	3
31	2699	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	11	p6	q5	ENSP00000249501	ENSP00000249501	HOXD10	q5	264.1	11	51083777	51087885	1	2	80%	51.2%	831	0.58 / 0.61 = 0.95	NOMATCH:ENSMMUG00000000925(ENSMMUP00000001242);	2
31	2699	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	11	p7	q6	ENSP00000249499	ENSP00000249499	HOXD9	q6	266	11	51098616	51101080	1	2	67.8%	59.2%	600	0.6 / 0.6 = 1	ortholog_one2many:ENSMMUG00000000926_(ENSMMUP00000001243)	2
31	2699	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	11	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
31	2699	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	11	p9	q7	ENSP00000315949	ENSP00000315949	HOXD8	q7	270	11	51107689	51109683	1	2	89.7%	52.4%	666	0.49 / 0.5 = 0.98	between_species_paralog:ENSMMUG00000000928_(ENSMMUP00000001245)	2
31	2699	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	11	p10	q9	ENSP00000302548	ENSP00000302548	HOXD4	q9	253.3	11	51153294	51154580	1	2	100%	52%	792	0.51 / 0.53 = 0.96	between_species_paralog:ENSMMUG00000006533_(ENSMMUP00000008604)	2
31	2699	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	11	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
31	2699	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	11	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
31	2699	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	11	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
31	2699	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	11	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
32	2669	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_12	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
32	2669	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_12	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
32	2669	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_12	p3	q1	ENSP00000249505	ENSP00000249505	HOXD13	q1	254	scaffold_12	2381071	2382177	-1	2	72.2%	57.5%	690	0.61 / 0.6 = 1.02	between_species_paralog:NEWSINFRUG00000149643_(NEWSINFRUP00000159086)	4
32	2669	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_12	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
32	2669	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_12	p5	q2	ENSP00000249504	ENSP00000249504	HOXD11	q2	216.2	scaffold_12	2371832	2373459	-1	2	44.7%	71.4%	447	0.53 / 0.61 = 0.87	between_species_paralog:NEWSINFRUG00000157392_(NEWSINFRUP00000165803)	4
32	2669	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_12	p6	q3	ENSP00000249501	ENSP00000249501	HOXD10	q3	276	scaffold_12	2365048	2366742	-1	2	95.9%	49.3%	1032	0.58 / 0.6 = 0.97	NOMATCH:NEWSINFRUG00000149640(NEWSINFRUP00000159083);	2
32	2669	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_12	p7	q4	ENSP00000249499	ENSP00000249499	HOXD9	q4	216.4	scaffold_12	2360015	2361166	-1	2	69%	50%	633	0.6 / 0.68 = 0.88	between_species_paralog:NEWSINFRUG00000149637_(NEWSINFRUP00000159080 [HXA9_FUGRU])	3
32	2669	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_12	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
32	2669	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_12	p9	q5	ENSP00000315949	ENSP00000315949	HOXD8	q5	103	scaffold_12	2350075	2350314	-1	1	27.2%	60%	240	0.49 / 0.81 = 0.6	NOMATCH:	7
32	2669	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_12	p10	q6	ENSP00000302548	ENSP00000302548	HOXD4	q6	235.3	scaffold_12	2341356	2342542	-1	2	90.2%	53%	675	0.51 / 0.57 = 0.89	between_species_paralog:NEWSINFRUG00000149629_(NEWSINFRUP00000159072)	4
32	2669	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_12	p11	q7	ENSP00000249440	ENSP00000249440	HOXD3	q7	347.1	scaffold_12	2329054	2331951	-1	2	96.1%	46.7%	1245	0.56 / 0.62 = 0.9	between_species_paralog:NEWSINFRUG00000149628_(NEWSINFRUP00000159071)	2
32	2669	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_12	p12	q9	ENSP00000328598	ENSP00000328598	HOXD1	q9	124	scaffold_12	2318949	2319182	-1	1	23.8%	75.6%	234	0.79 / 0.8 = 0.99	NOMATCH:NEWSINFRUG00000149627(NEWSINFRUP00000159068);	1
32	2669	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_12	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
32	2669	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_12	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
33	2635	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
33	2635	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p2	q1	ENSP00000312385	ENSP00000312385	EVX2	q1	171.7	3	23057158	23057956	1	2	34%	52.1%	450	0.62 / 0.78 = 0.79	NOMATCH:ENSDARG00000056012(ENSDARP00000072887 [eve1]);	3
33	2635	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p3	q2	ENSP00000249505	ENSP00000249505	HOXD13	q2	270	3	23044789	23046033	-1	2	89.6%	47.4%	825	0.61 / 0.58 = 1.05	between_species_paralog:ENSDARG00000056015_(ENSDARP00000072890 [hoxb13a])
between_species_paralog:ENSDARG00000056016_(ENSDARP00000072894)	2
33	2635	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
33	2635	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	q4
33	2635	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p6	q3	ENSP00000249501	ENSP00000249501	HOXD10	q3	139	3	23029315	23029581	-1	1	26.2%	71.9%	267	0.58 / 0.79 = 0.73	NOMATCH:ENSDARG00000011579(ENSDARP00000016856 [hoxb10a]);	5
33	2635	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p7	q4	ENSP00000249499	ENSP00000249499	HOXD9	q4	144	3	23019703	23019927	-1	1	21.9%	86.7%	225	0.6 / 0.78 = 0.77	between_species_paralog:ENSDARG00000056023_(ENSDARP00000022169 [hoxb9a])	3
33	2635	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
33	2635	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p9	q5	ENSP00000315949	ENSP00000315949	HOXD8	q5	275	3	23010726	23012162	-1	2	95.9%	52.7%	681	0.49 / 0.49 = 1	between_species_paralog:ENSDARG00000056027_(ENSDARP00000046637 [hoxb8a])	2
33	2635	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p10	q9	ENSP00000302548	ENSP00000302548	HOXD4	q9	270	3	22976995	22978642	-1	2	93.7%	56.3%	714	0.51 / 0.5 = 1.02	between_species_paralog:ENSDARG00000013533_(ENSDARP00000008458 [hoxb4a])	2
33	2635	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p11	q10	ENSP00000249440	ENSP00000249440	HOXD3	q10	420	3	22952393	22954315	-1	2	96.3%	53.1%	1248	0.56 / 0.54 = 1.04	between_species_paralog:ENSDARG00000029263_(ENSDARP00000055579 [hoxb3a])	2
33	2635	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p12	q12	ENSP00000328598	ENSP00000328598	HOXD1	q12	122	3	22929921	22930142	-1	1	22.9%	80%	222	0.79 / 0.8 = 0.99	NOMATCH:ENSDARG00000008174(ENSDARP00000014577 [hoxb1a]);	4
33	2635	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
33	2635	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
34	2603	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXII	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
34	2603	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXII	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
34	2603	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXII	p3	q1	ENSP00000249505	ENSP00000249505	HOXD13	q1	276	groupXII	11575579	11578147	1	2	79.1%	52.2%	756	0.61 / 0.57 = 1.07	between_species_paralog:ENSGACG00000009389_(ENSGACP00000012375)	1
34	2603	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXII	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
34	2603	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXII	p5	q2	ENSP00000249504	ENSP00000249504	HOXD11	q2	226.5	groupXII	11597276	11599469	1	2	76.9%	48.9%	660	0.53 / 0.59 = 0.9	between_species_paralog:ENSGACG00000009392_(ENSGACP00000012382)	4
34	2603	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXII	p6	q3	ENSP00000249501	ENSP00000249501	HOXD10	q3	201.3	groupXII	11606255	11609065	1	2	94.1%	41.2%	981	0.58 / 0.7 = 0.83	NOMATCH:ENSGACG00000009394(ENSGACP00000012387);	3
34	2603	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXII	p7	q4	ENSP00000249499	ENSP00000249499	HOXD9	q4	254	groupXII	11616265	11618032	1	2	66.7%	58.1%	591	0.6 / 0.62 = 0.97	between_species_paralog:ENSGACG00000009396_(ENSGACP00000012392)	1
34	2603	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXII	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
34	2603	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXII	p9	q5	ENSP00000315949	ENSP00000315949	HOXD8	q5	274	groupXII	11622080	11624013	1	2	90.3%	54.9%	672	0.49 / 0.49 = 1	ortholog_one2many:ENSGACG00000009401_(ENSGACP00000012396)	1
34	2603	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXII	p10	q8	ENSP00000302548	ENSP00000302548	HOXD4	q8	257.1	groupXII	11647407	11648707	1	2	100%	53.8%	792	0.51 / 0.53 = 0.96	between_species_paralog:ENSGACG00000009421_(ENSGACP00000012427)	2
34	2603	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXII	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
34	2603	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXII	p12	q9	ENSP00000328598	ENSP00000328598	HOXD1	q9	106	groupXII	11673811	11674017	1	1	21%	72.5%	207	0.79 / 0.83 = 0.95	NOMATCH:ENSGACG00000009431(ENSGACP00000012432);	4
34	2603	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXII	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
34	2603	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXII	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
35	2597	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	12	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
35	2597	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	12	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
35	2597	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	12	p3	q1	ENSP00000249505	ENSP00000249505	HOXD13	q1	151	12	52619219	52619716	1	1	50.7%	43.3%	498	0.61 / 0.76 = 0.8	within_species_paralog:ENSG00000123364_(ENSP00000243056 [HXC13_HUMAN])	4
35	2597	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	12	p4	q3	ENSP00000303578	ENSP00000303578	HOXD12	q3	187.3	12	52634981	52636614	1	2	78.8%	48.7%	663	0.66 / 0.66 = 1	NOMATCH:ENSG00000123407(ENSP00000243103 [HXC12_HUMAN]);	2
35	2597	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	12	p5	q4	ENSP00000249504	ENSP00000249504	HOXD11	q4	148	12	52654595	52655458	1	1	80.2%	38.2%	864	0.53 / 0.73 = 0.73	within_species_paralog:ENSG00000123388_(ENSP00000243082 [HXC11_HUMAN])	3
35	2597	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	12	p6	q5	ENSP00000249501	ENSP00000249501	HOXD10	q5	288	12	52665383	52669494	1	2	92.1%	50.5%	954	0.58 / 0.58 = 1	NOMATCH:ENSG00000180818(ENSP00000307321 [HXC10_HUMAN]);	2
35	2597	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	12	p7	q6	ENSP00000249499	ENSP00000249499	HOXD9	q6	266	12	52680240	52682713	1	2	67.8%	59.2%	600	0.6 / 0.6 = 1	within_species_paralog:ENSG00000180806_(ENSP00000302836 [HXC9_HUMAN])	2
35	2597	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	12	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
35	2597	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	12	p9	q7	ENSP00000315949	ENSP00000315949	HOXD8	q7	278	12	52689336	52691360	1	2	92.1%	52.5%	687	0.49 / 0.49 = 1	within_species_paralog:ENSG00000037965_(ENSP00000040584 [HXC8_HUMAN])	2
35	2597	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	12	p10	q10	ENSP00000302548	ENSP00000302548	HOXD4	q10	265	12	52733974	52735253	1	2	100%	54.4%	792	0.51 / 0.51 = 1	within_species_paralog:ENSG00000198353_(ENSP00000305973 [HXC4_HUMAN])	2
35	2597	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	12	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
35	2597	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	12	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
35	2597	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	12	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
35	2597	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	12	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
36	2517	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	19	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
36	2517	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	19	p2	q1	ENSP00000312385	ENSP00000312385	EVX2	q1	300	19	13885840	13886934	-1	2	66.8%	50.8%	774	0.62 / 0.63 = 0.98	between_species_paralog:ENSDARG00000005628_(ENSDARP00000052635 [evx1])	2
36	2517	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	19	p3	q2	ENSP00000249505	ENSP00000249505	HOXD13	q2	224	19	13896550	13897422	1	1	76.1%	45.3%	873	0.61 / 0.65 = 0.94	between_species_paralog:ENSDARG00000007609_(ENSDARP00000003928 [hoxa13a])	5
36	2517	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	19	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
36	2517	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	19	p5	q3	ENSP00000249504	ENSP00000249504	HOXD11	q3	244	19	13904071	13905632	1	2	91.1%	46.2%	846	0.53 / 0.56 = 0.95	between_species_paralog:ENSDARG00000009045_(ENSDARP00000006348 [hoxa11a])	3
36	2517	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	19	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	q4
36	2517	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	19	p7	q4	ENSP00000249499	ENSP00000249499	HOXD9	q4	139	19	13917746	13917979	1	1	22.8%	82.1%	234	0.6 / 0.79 = 0.76	between_species_paralog:ENSDARG00000009461_(ENSDARP00000009894 [hoxa9a])	4
36	2517	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	19	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
36	2517	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	19	p9	q5	ENSP00000315949	ENSP00000315949	HOXD8	q5	100	19	13927415	13927606	1	1	22.1%	70.3%	192	0.49 / 0.81 = 0.6	NOMATCH:ENSDARG00000001784(ENSDARP00000023754 [hoxa5a]);	noData
36	2517	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	19	p10	q6	ENSP00000302548	ENSP00000302548	HOXD4	q6	228.9	19	13934404	13935531	1	2	89.8%	51.5%	681	0.51 / 0.58 = 0.88	NOMATCH:ENSDARG00000036231(ENSDARP00000052632 [hoxa3a]);ENSDARG00000057724(ENSDARP00000074915);	4
36	2517	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	19	p11	q7	ENSP00000249440	ENSP00000249440	HOXD3	q7	337.4	19	13944458	13946294	1	2	96.3%	45.4%	1281	0.56 / 0.63 = 0.89	between_species_paralog:ENSDARG00000036231_(ENSDARP00000052632 [hoxa3a])	3
36	2517	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	19	p12	q8	ENSP00000328598	ENSP00000328598	HOXD1	q8	128	19	13953818	13954138	1	1	32.6%	61.7%	321	0.79 / 0.79 = 1	NOMATCH:ENSDARG00000057721(ENSDARP00000074905 [Q98SI1-2],ENSDARP00000074910 [hoxa1a]);	3
36	2517	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	19	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
36	2517	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	19	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
37	2474	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	15	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
37	2474	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	15	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
37	2474	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	15	p3	q1	ENSP00000249505	ENSP00000249505	HOXD13	q1	152	15	102749444	102749953	1	1	49.9%	44.5%	510	0.61 / 0.76 = 0.8	between_species_paralog:ENSMUSG00000001655_(ENSMUSP00000001700 [Hoxc13])	4
37	2474	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	15	p4	q3	ENSP00000303578	ENSP00000303578	HOXD12	q3	188.6	15	102764887	102766548	1	2	97.8%	41.4%	828	0.66 / 0.66 = 1	NOMATCH:ENSMUSG00000050328(ENSMUSP00000051003 [Hoxc12]);	2
37	2474	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	15	p5	q4	ENSP00000249504	ENSP00000249504	HOXD11	q4	233.9	15	102782620	102784729	1	2	99.1%	44.2%	846	0.53 / 0.57 = 0.93	between_species_paralog:ENSMUSG00000001656_(ENSMUSP00000001701 [HXC11_MOUSE])	3
37	2474	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	15	p6	q5	ENSP00000249501	ENSP00000249501	HOXD10	q5	286	15	102794964	102799106	1	2	92.1%	50.3%	903	0.58 / 0.58 = 1	NOMATCH:ENSMUSG00000022484(ENSMUSP00000001699 [Hoxc10]);	2
37	2474	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	15	p7	q6	ENSP00000249499	ENSP00000249499	HOXD9	q6	266	15	102809687	102812161	1	2	67.8%	59.2%	600	0.6 / 0.6 = 1	between_species_paralog:ENSMUSG00000036139_(ENSMUSP00000001706 [Hoxc9])	2
37	2474	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	15	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
37	2474	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	15	p9	q7	ENSP00000315949	ENSP00000315949	HOXD8	q7	139	15	102820593	102820802	1	1	24.1%	92.9%	210	0.49 / 0.74 = 0.66	between_species_paralog:ENSMUSG00000001657_(ENSMUSP00000001703 [Hoxc8])	3
37	2474	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	15	p10	q10	ENSP00000302548	ENSP00000302548	HOXD4	q10	252.9	15	102862757	102864023	1	2	100%	51.5%	792	0.51 / 0.54 = 0.94	between_species_paralog:ENSMUSG00000075394_(ENSMUSP00000097740 [Hoxc4])	2
37	2474	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	15	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
37	2474	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	15	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
37	2474	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	15	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
37	2474	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	15	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
38	2109	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	27	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
38	2109	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	27	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
38	2109	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	27	p3	q1	ENSP00000249505	ENSP00000249505	HOXD13	q1	142	27	4324138	4324533	-1	1	42.1%	47.9%	396	0.61 / 0.78 = 0.78	between_species_paralog:ENSCAFG00000006648_(ENSCAFP00000009935)	4
38	2109	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	27	p4	q3	ENSP00000303578	ENSP00000303578	HOXD12	q3	182.9	27	4307268	4308845	-1	2	67.3%	52.1%	540	0.66 / 0.67 = 0.99	NOMATCH:ENSCAFG00000006645(ENSCAFP00000009931);	2
38	2109	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	27	p5	q4	ENSP00000249504	ENSP00000249504	HOXD11	q4	208.4	27	4288986	4290950	-1	2	97.3%	41.3%	828	0.53 / 0.62 = 0.85	between_species_paralog:ENSCAFG00000025599_(ENSCAFP00000009922)	3
38	2109	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	27	p6	q5	ENSP00000249501	ENSP00000249501	HOXD10	q5	281	27	4274733	4278842	-1	2	92.1%	48.9%	903	0.58 / 0.59 = 0.98	NOMATCH:ENSCAFG00000006636(ENSCAFP00000009915);	2
38	2109	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	27	p7	---	ENSP00000249499	ENSP00000249499	HOXD9	q5
38	2109	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	27	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
38	2109	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	27	p9	q6	ENSP00000315949	ENSP00000315949	HOXD8	q6	269	27	4254363	4256431	-1	2	90.7%	55.5%	648	0.49 / 0.5 = 0.98	between_species_paralog:ENSCAFG00000006626_(ENSCAFP00000009905 [607052])	3
38	2109	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	27	p10	q7	ENSP00000302548	ENSP00000302548	HOXD4	q9	110	27	4236052	4236291	-1	1	31.4%	63.8%	240	0.51 / 0.8 = 0.64	NOMATCH:ENSCAFG00000006622(ENSCAFP00000009890 [486499]);	10
38	2109	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	27	p11	q8	ENSP00000249440	ENSP00000249440	HOXD3	q8	103	27	4231110	4231502	-1	1	25.9%	49.6%	393	0.56 / 0.88 = 0.64	NOMATCH:ENSCAFG00000006618(ENSCAFP00000009886 [607625]);	5
38	2109	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	27	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
38	2109	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	27	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
38	2109	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	27	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
39	2105	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	5	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
39	2105	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	5	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
39	2105	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	5	p3	q1	ENSP00000249505	ENSP00000249505	HOXD13	q1	150	5	16874232	16874708	-1	1	48.7%	44.4%	477	0.61 / 0.76 = 0.8	between_species_paralog:ENSBTAG00000000923_(ENSBTAP00000001222)	4
39	2105	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	5	p4	q3	ENSP00000303578	ENSP00000303578	HOXD12	q3	190.2	5	16857536	16859124	-1	2	100%	41.8%	849	0.66 / 0.65 = 1.02	NOMATCH:ENSBTAG00000000924(ENSBTAP00000001223);	2
39	2105	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	5	p5	q4	ENSP00000249504	ENSP00000249504	HOXD11	q4	144	5	16838896	16839789	-1	1	76.6%	38%	894	0.53 / 0.74 = 0.72	ortholog_one2many:ENSBTAG00000006879_(ENSBTAP00000009028)	3
39	2105	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	5	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	q5
39	2105	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	5	p7	q5	ENSP00000249499	ENSP00000249499	HOXD9	q5	266	5	16811875	16814511	-1	2	67.8%	59.2%	600	0.6 / 0.6 = 1	between_species_paralog:ENSBTAG00000005606_(ENSBTAP00000007361)	2
39	2105	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	5	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
39	2105	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	5	p9	q6	ENSP00000315949	ENSP00000315949	HOXD8	q6	232.6	5	16772492	16774311	-1	2	48.6%	76.8%	423	0.49 / 0.57 = 0.86	between_species_paralog:ENSBTAG00000012149_(ENSBTAP00000016117)	2
39	2105	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	5	p10	q9	ENSP00000302548	ENSP00000302548	HOXD4	q9	272	5	16729786	16731061	-1	2	100%	53.3%	840	0.51 / 0.5 = 1.02	between_species_paralog:ENSBTAG00000003304_(ENSBTAP00000004277)	2
39	2105	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	5	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
39	2105	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	5	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
39	2105	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	5	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
39	2105	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	5	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
40	2082	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	11	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
40	2082	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	11	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
40	2082	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	11	p3	q1	ENSP00000249505	ENSP00000249505	HOXD13	q1	229	11	96010704	96012313	1	2	72.5%	48%	684	0.61 / 0.64 = 0.95	between_species_paralog:ENSMUSG00000049604_(ENSMUSP00000056315 [Hoxb13])	3
40	2082	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	11	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
40	2082	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	11	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
40	2082	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	11	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	q2
40	2082	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	11	p7	q2	ENSP00000249499	ENSP00000249499	HOXD9	q2	145	11	96090716	96090937	1	1	21.6%	89.2%	222	0.6 / 0.78 = 0.77	between_species_paralog:ENSMUSG00000020875_(ENSMUSP00000000010 [Hoxb9])	4
40	2082	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	11	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
40	2082	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	11	p9	q3	ENSP00000315949	ENSP00000315949	HOXD8	q3	270	11	96099053	96100527	1	2	98.6%	52.6%	699	0.49 / 0.5 = 0.98	between_species_paralog:ENSMUSG00000056648_(ENSMUSP00000052496 [Hoxb8])	2
40	2082	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	11	p10	q7	ENSP00000302548	ENSP00000302548	HOXD4	q7	240.3	11	96134860	96136373	1	2	89.8%	54.7%	708	0.51 / 0.56 = 0.91	between_species_paralog:ENSMUSG00000038692_(ENSMUSP00000048002 [Hoxb4])	3
40	2082	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	11	p11	q8	ENSP00000249440	ENSP00000249440	HOXD3	q8	418	11	96160327	96162486	1	2	96.8%	54.8%	1224	0.56 / 0.54 = 1.04	between_species_paralog:ENSMUSG00000048763_(ENSMUSP00000053426 [Hoxb3])	2
40	2082	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	11	p12	q10	ENSP00000328598	ENSP00000328598	HOXD1	q10	114	11	96182903	96183118	1	1	22.3%	75.3%	216	0.79 / 0.81 = 0.98	NOMATCH:ENSMUSG00000018973(ENSMUSP00000019117 [Hoxb1]);	3
40	2082	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	11	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
40	2082	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	11	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
41	2075	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	17	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
41	2075	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	17	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
41	2075	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	17	p3	q1	ENSP00000249505	ENSP00000249505	HOXD13	q1	227	17	44159157	44160786	-1	2	70.7%	48.1%	663	0.61 / 0.64 = 0.95	within_species_paralog:ENSG00000159184_(ENSP00000290295 [HXB13_HUMAN])	3
41	2075	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	17	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
41	2075	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	17	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	q2
41	2075	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	17	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	q2
41	2075	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	17	p7	q2	ENSP00000249499	ENSP00000249499	HOXD9	q2	145	17	44055273	44055494	-1	1	21.6%	89.2%	222	0.6 / 0.78 = 0.77	within_species_paralog:ENSG00000170689_(ENSP00000309439 [HXB9_HUMAN])	4
41	2075	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	17	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
41	2075	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	17	p9	q3	ENSP00000315949	ENSP00000315949	HOXD8	q3	269	17	44045623	44047065	-1	2	94.8%	53.3%	672	0.49 / 0.5 = 0.98	within_species_paralog:ENSG00000120068_(ENSP00000239144 [HXB8_HUMAN])	3
41	2075	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	17	p10	q7	ENSP00000302548	ENSP00000302548	HOXD4	q7	249.4	17	44009128	44010680	-1	2	89.8%	54.1%	726	0.51 / 0.54 = 0.94	within_species_paralog:ENSG00000182742_(ENSP00000328928 [HXB4_HUMAN])	3
41	2075	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	17	p11	q8	ENSP00000249440	ENSP00000249440	HOXD3	q8	398	17	43982698	43984856	-1	2	97.2%	52.3%	1233	0.56 / 0.56 = 1	within_species_paralog:ENSG00000120093_(ENSP00000308252 [HXB3_HUMAN])	2
41	2075	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	17	p12	q10	ENSP00000328598	ENSP00000328598	HOXD1	q10	115	17	43961923	43962234	-1	1	31.7%	60%	312	0.79 / 0.81 = 0.98	NOMATCH:ENSG00000120094(ENSP00000355140 [HXB1_HUMAN]);	3
41	2075	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	17	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
41	2075	HOXD9_ENSG00000128709_5e5.protein.info	Homo_sapiens	17	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
42	2044	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_41	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
42	2044	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_41	p2	q1	ENSP00000312385	ENSP00000312385	EVX2	q1	153.3	scaffold_41	485042	487257	-1	2	30.9%	51%	432	0.62 / 0.81 = 0.77	NOMATCH:	3
42	2044	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_41	p3	q2	ENSP00000249505	ENSP00000249505	HOXD13	q2	264	scaffold_41	501905	503538	1	2	89%	48%	855	0.61 / 0.59 = 1.03	between_species_paralog:NEWSINFRUG00000163355_(NEWSINFRUP00000178216)	3
42	2044	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_41	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
42	2044	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_41	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
42	2044	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_41	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	q3
42	2044	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_41	p7	q3	ENSP00000249499	ENSP00000249499	HOXD9	q3	142	scaffold_41	540964	541188	1	1	21.9%	86.7%	225	0.6 / 0.79 = 0.76	NOMATCH:NEWSINFRUG00000160069(NEWSINFRUP00000181951);	4
42	2044	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_41	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
42	2044	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_41	p9	q5	ENSP00000315949	ENSP00000315949	HOXD8	q5	146	scaffold_41	555237	555512	1	1	30.3%	79.3%	276	0.49 / 0.73 = 0.67	between_species_paralog:NEWSINFRUG00000136620_(NEWSINFRUP00000144849)	2
42	2044	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_41	p10	q8	ENSP00000302548	ENSP00000302548	HOXD4	q8	257.9	scaffold_41	601559	603728	1	2	89.8%	56.1%	708	0.51 / 0.53 = 0.96	between_species_paralog:NEWSINFRUG00000136631_(NEWSINFRUP00000144860 [HXB4_FUGRU])	2
42	2044	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_41	p11	q9	ENSP00000249440	ENSP00000249440	HOXD3	q9	334.7	scaffold_41	633457	637089	1	2	99.3%	45.6%	1458	0.56 / 0.63 = 0.89	between_species_paralog:NEWSINFRUG00000157209_(NEWSINFRUP00000181213 [Q6IEH9_FUGRU])	3
42	2044	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_41	p12	q11	ENSP00000328598	ENSP00000328598	HOXD1	q11	120	scaffold_41	661200	661538	1	1	33.5%	59.1%	339	0.79 / 0.8 = 0.99	NOMATCH:NEWSINFRUG00000136635(NEWSINFRUP00000144865 [Q6IEI1_FUGRU]);	2
42	2044	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_41	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
42	2044	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_41	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
43	1994	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	9	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
43	1994	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	9	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
43	1994	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	9	p3	q1	ENSP00000249505	ENSP00000249505	HOXD13	q1	226	9	28285962	28287807	-1	2	71.3%	48.2%	669	0.61 / 0.65 = 0.94	between_species_paralog:ENSCAFG00000016870_(ENSCAFP00000024813 [491060])	2
43	1994	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	9	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
43	1994	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	9	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
43	1994	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	9	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	q2
43	1994	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	9	p7	q2	ENSP00000249499	ENSP00000249499	HOXD9	q2	145	9	28212650	28212871	-1	1	21.6%	89.2%	222	0.6 / 0.78 = 0.77	ortholog_one2many:ENSCAFG00000016867_(ENSCAFP00000024811)	3
43	1994	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	9	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
43	1994	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	9	p9	q3	ENSP00000315949	ENSP00000315949	HOXD8	q3	273	9	28202580	28204191	-1	2	94.8%	52.8%	708	0.49 / 0.5 = 0.98	between_species_paralog:ENSCAFG00000016860_(ENSCAFP00000024802 [491059])	2
43	1994	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	9	p10	q7	ENSP00000302548	ENSP00000302548	HOXD4	q7	222.5	9	28165652	28167383	-1	2	75.3%	58.8%	501	0.51 / 0.59 = 0.86	between_species_paralog:ENSCAFG00000016849_(ENSCAFP00000024777)	2
43	1994	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	9	p11	q8	ENSP00000249440	ENSP00000249440	HOXD3	q8	363.4	9	28138727	28140962	-1	2	97.2%	48.8%	1260	0.56 / 0.6 = 0.93	NOMATCH:ENSCAFG00000016845(ENSCAFP00000024776);	3
43	1994	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	9	p12	q10	ENSP00000328598	ENSP00000328598	HOXD1	q10	115	9	28119861	28120124	-1	1	28%	65.2%	264	0.79 / 0.81 = 0.98	NOMATCH:ENSCAFG00000016841(ENSCAFP00000024764 [491052]);	3
43	1994	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	9	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
43	1994	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	9	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
44	1985	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXI	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
44	1985	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXI	p2	q1	ENSP00000312385	ENSP00000312385	EVX2	q1	166.4	groupXI	1481474	1484334	-1	2	38.4%	46.9%	540	0.62 / 0.79 = 0.78	NOMATCH:	3
44	1985	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXI	p3	q2	ENSP00000249505	ENSP00000249505	HOXD13	q2	264	groupXI	1524294	1526021	1	2	90.7%	48.9%	831	0.61 / 0.59 = 1.03	between_species_paralog:ENSGACG00000005617_(ENSGACP00000007419)	2
44	1985	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXI	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
44	1985	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXI	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
44	1985	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXI	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	q3
44	1985	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXI	p7	q3	ENSP00000249499	ENSP00000249499	HOXD9	q3	146	groupXI	1626200	1626433	1	1	22.8%	85.9%	234	0.6 / 0.78 = 0.77	NOMATCH:	4
44	1985	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXI	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
44	1985	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXI	p9	q5	ENSP00000315949	ENSP00000315949	HOXD8	q5	115	groupXI	1655562	1655828	1	1	32.1%	64.5%	267	0.49 / 0.78 = 0.63	NOMATCH:ENSGACG00000005623(ENSGACP00000007424);	3
44	1985	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXI	p10	q7	ENSP00000302548	ENSP00000302548	HOXD4	q7	253.7	groupXI	1677309	1679610	1	2	95.7%	51.8%	795	0.51 / 0.53 = 0.96	between_species_paralog:ENSGACG00000005628_(ENSGACP00000007429)	3
44	1985	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXI	p11	q8	ENSP00000249440	ENSP00000249440	HOXD3	q8	312	groupXI	1709777	1713575	1	2	79.9%	49.7%	1170	0.56 / 0.65 = 0.86	between_species_paralog:ENSGACG00000005631_(ENSGACP00000007432)	3
44	1985	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXI	p12	q10	ENSP00000328598	ENSP00000328598	HOXD1	q10	118	groupXI	1740279	1740566	1	1	32.3%	61.3%	288	0.79 / 0.81 = 0.98	NOMATCH:ENSGACG00000005635(ENSGACP00000007437);	2
44	1985	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXI	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
44	1985	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXI	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
45	1976	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
45	1976	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p2	q1	ENSP00000312385	ENSP00000312385	EVX2	q1	157.2	Un_random	38191031	38193032	1	2	30.9%	51.9%	432	0.62 / 0.8 = 0.78	NOMATCH:HOXB-EVX(HOXB-EVX [HOXB-EVX]);GSTENG00020458001(GSTENP00020458001 [GSTENT00020458001]);	3
45	1976	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p3	q2	ENSP00000249505	ENSP00000249505	HOXD13	q2	264	Un_random	38176504	38178141	-1	2	89.6%	47.2%	870	0.61 / 0.59 = 1.03	between_species_paralog:GSTENG00020457001_(GSTENP00020457001 [GSTENT00020457001])
between_species_paralog:HOXB13_(HOXB13 [HOXB13])	2
45	1976	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
45	1976	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
45	1976	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	q3
45	1976	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p7	q3	ENSP00000249499	ENSP00000249499	HOXD9	q3	143	Un_random	38140064	38140297	-1	1	22.8%	84.6%	234	0.6 / 0.79 = 0.76	NOMATCH:GSTENG00020456001(GSTENP00020456001 [GSTENT00020456001]);	4
45	1976	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
45	1976	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p9	q4	ENSP00000315949	ENSP00000315949	HOXD8	q4	115	Un_random	38129985	38130416	-1	1	66.2%	38.3%	432	0.49 / 0.78 = 0.63	between_species_paralog:HOXB8_(HOXB8 [HOXB8])	2
45	1976	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p10	q6	ENSP00000302548	ENSP00000302548	HOXD4	q6	252	Un_random	38083014	38085184	-1	2	89.8%	55.1%	723	0.51 / 0.54 = 0.94	between_species_paralog:HOXB4_(HOXB4 [HOXB4])	3
45	1976	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p11	q7	ENSP00000249440	ENSP00000249440	HOXD3	q7	319.7	Un_random	38049854	38053317	-1	3	99.3%	43.6%	1473	0.56 / 0.65 = 0.86	between_species_paralog:GSTENG00020452001_(GSTENP00020452001 [GSTENT00020452001])
ortholog_one2many:HOXB3_(HOXB3 [HOXB3])	4
45	1976	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p12	q9	ENSP00000328598	ENSP00000328598	HOXD1	q9	114	Un_random	38028536	38028751	-1	1	21.6%	77.8%	216	0.79 / 0.81 = 0.98	NOMATCH:HOXB1(HOXB1 [HOXB1]);GSTENG00005035001(GSTENP00005035001 [GSTENT00005035001]);	3
45	1976	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
45	1976	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
46	1924	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	27	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
46	1924	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	27	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
46	1924	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	27	p3	q1	ENSP00000249505	ENSP00000249505	HOXD13	q1	225	27	3518838	3521210	1	2	71.3%	48.4%	720	0.61 / 0.65 = 0.94	between_species_paralog:ENSGALG00000001543_(ENSGALP00000002343)	2
46	1924	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	27	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
46	1924	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	27	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
46	1924	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	27	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	q2
46	1924	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	27	p7	q2	ENSP00000249499	ENSP00000249499	HOXD9	q2	144	27	3567989	3568210	1	1	21.6%	89.2%	222	0.6 / 0.78 = 0.77	between_species_paralog:ENSGALG00000001276_(ENSGALP00000001945)	4
46	1924	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	27	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
46	1924	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	27	p9	q3	ENSP00000315949	ENSP00000315949	HOXD8	q3	279	27	3578995	3580514	1	2	99.7%	50.7%	744	0.49 / 0.48 = 1.02	ortholog_one2many:ENSGALG00000017353_(ENSGALP00000027984 [Q9YH27_CHICK])	2
46	1924	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	27	p10	q4	ENSP00000302548	ENSP00000302548	HOXD4	q4	130	27	3586315	3586608	1	1	36.1%	68.4%	294	0.51 / 0.76 = 0.67	NOMATCH:ENSGALG00000017353(ENSGALP00000027984 [Q9YH27_CHICK],ENSGALP00000039452 [HXB8_CHICK]);ENSGALG00000002996(ENSGALP00000021557,ENSGALP00000017986,ENSGALP00000028562 [HXB5_CHICK]);	4
46	1924	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	27	p11	q5	ENSP00000249440	ENSP00000249440	HOXD3	q5	406	27	3615199	3617444	1	2	96.3%	52.2%	1200	0.56 / 0.55 = 1.02	between_species_paralog:ENSGALG00000013455_(ENSGALP00000021897 [HXB3_CHICK])	3
46	1924	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	27	p12	q7	ENSP00000328598	ENSP00000328598	HOXD1	q7	124	27	3640885	3641226	1	1	38.7%	55.1%	342	0.79 / 0.8 = 0.99	NOMATCH:ENSGALG00000017353(ENSGALP00000027984 [Q9YH27_CHICK],ENSGALP00000039452 [HXB8_CHICK]);ENSGALG00000013454(ENSGALP00000021895 [HXB1_CHICK],ENSGALP00000021896 [O73610_CHICK]);	2
46	1924	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	27	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
46	1924	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	27	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
47	1899	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	8	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
47	1899	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	8	p2	q1	ENSP00000312385	ENSP00000312385	EVX2	q1	161	8	24254536	24257383	-1	2	33%	50.3%	471	0.62 / 0.8 = 0.78	NOMATCH:ENSORLG00000017026(ENSORLP00000021300,ENSORLP00000021302 [Q2WFT1_ORYLA]);	3
47	1899	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	8	p3	q2	ENSP00000249505	ENSP00000249505	HOXD13	q2	254	8	24280310	24281755	1	2	90.1%	48.4%	828	0.61 / 0.6 = 1.02	between_species_paralog:ENSORLG00000017031_(ENSORLP00000021307 [Q3V614_ORYLA])	2
47	1899	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	8	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
47	1899	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	8	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
47	1899	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	8	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	q3
47	1899	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	8	p7	q3	ENSP00000249499	ENSP00000249499	HOXD9	q3	142	8	24318538	24318762	1	1	21.9%	86.7%	225	0.6 / 0.79 = 0.76	between_species_paralog:ENSORLG00000017035_(ENSORLP00000021315 [Q3V615_ORYLA])	4
47	1899	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	8	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
47	1899	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	8	p9	q4	ENSP00000315949	ENSP00000315949	HOXD8	q4	122	8	24328909	24329400	1	1	70%	38.4%	492	0.49 / 0.77 = 0.64	NOMATCH:ENSORLG00000017036(ENSORLP00000021316 [Q3V616_ORYLA],ENSORLP00000021317 [Q3V617_ORYLA]);	2
47	1899	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	8	p10	q7	ENSP00000302548	ENSP00000302548	HOXD4	q7	257.4	8	24381089	24383038	1	2	96.5%	53.8%	774	0.51 / 0.53 = 0.96	between_species_paralog:ENSORLG00000017046_(ENSORLP00000021329 [Q3V619_ORYLA])	2
47	1899	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	8	p11	q8	ENSP00000249440	ENSP00000249440	HOXD3	q8	245	8	24414385	24415236	1	1	59%	52.6%	852	0.56 / 0.73 = 0.77	between_species_paralog:ENSORLG00000017048_(ENSORLP00000021331 [Q3V620_ORYLA])	3
47	1899	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	8	p12	q10	ENSP00000328598	ENSP00000328598	HOXD1	q10	116	8	24441627	24441854	1	1	23.8%	74.4%	228	0.79 / 0.81 = 0.98	NOMATCH:ENSORLG00000017053(ENSORLP00000021337 [Q2WFU0_ORYLA]);	2
47	1899	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	8	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
47	1899	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	8	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
48	1870	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_334	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
48	1870	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_334	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
48	1870	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_334	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
48	1870	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_334	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
48	1870	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_334	p5	q1	ENSP00000249504	ENSP00000249504	HOXD11	q1,q2	100	scaffold_334	584781	584996	-1	1	21.3%	61.1%	216	0.53 / 0.82 = 0.65	NOMATCH:ENSXETG00000027350(ENSXETP00000025572,ENSXETP00000057085);	6
48	1870	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_334	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	q1,q2
48	1870	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_334	p7	q2	ENSP00000249499	ENSP00000249499	HOXD9	q1,q2	143	scaffold_334	579382	579603	-1	1	21.6%	86.5%	222	0.6 / 0.79 = 0.76	between_species_paralog:ENSXETG00000027350_(ENSXETP00000057085)	4
48	1870	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_334	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
48	1870	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_334	p9	q3	ENSP00000315949	ENSP00000315949	HOXD8	q3	278	scaffold_334	572897	573865	-1	2	99.3%	50.8%	747	0.49 / 0.49 = 1	NOMATCH:ENSXETG00000021993(ENSXETP00000047596);	2
48	1870	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_334	p10	q7	ENSP00000302548	ENSP00000302548	HOXD4	q7	215.6	scaffold_334	533069	534165	-1	2	88.2%	53.1%	642	0.51 / 0.6 = 0.85	between_species_paralog:ENSXETG00000021973_(ENSXETP00000047559 [hoxb4])	4
48	1870	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_334	p11	q8	ENSP00000249440	ENSP00000249440	HOXD3	q8	397	scaffold_334	512901	514779	-1	2	98.6%	51.9%	1185	0.56 / 0.56 = 1	between_species_paralog:ENSXETG00000021967_(ENSXETP00000047547 [hoxb3])	3
48	1870	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_334	p12	q10	ENSP00000328598	ENSP00000328598	HOXD1	q10	122	scaffold_334	487045	487281	-1	1	24.1%	74.7%	237	0.79 / 0.8 = 0.99	NOMATCH:ENSXETG00000021964(ENSXETP00000047531);	3
48	1870	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_334	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
48	1870	HOXD9_ENSG00000128709_5e5.protein.info	Xenopus_tropicalis	scaffold_334	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
49	1848	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	4	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
49	1848	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	4	p2	q1	ENSP00000312385	ENSP00000312385	EVX2	q1	320	4	40097176	40098505	-1	2	67.6%	55.4%	804	0.62 / 0.6 = 1.03	between_species_paralog:ENSBTAG00000020919_(ENSBTAP00000027866)	2
49	1848	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	4	p3	q2	ENSP00000249505	ENSP00000249505	HOXD13	q2	207.1	4	40142887	40144076	1	2	44.8%	64.6%	474	0.61 / 0.68 = 0.9	between_species_paralog:ENSBTAG00000014735_(ENSBTAP00000019609)	3
49	1848	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	4	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
49	1848	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	4	p5	q3	ENSP00000249504	ENSP00000249504	HOXD11	q3	262	4	40157129	40159489	1	2	83.7%	54%	738	0.53 / 0.52 = 1.02	between_species_paralog:ENSBTAG00000014738_(ENSBTAP00000019611)	1
49	1848	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	4	p6	q4	ENSP00000249501	ENSP00000249501	HOXD10	q4	214.7	4	40169001	40171084	1	2	43.8%	71%	465	0.58 / 0.69 = 0.84	NOMATCH:ENSBTAG00000003278(ENSBTAP00000004243);	2
49	1848	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	4	p7	q5	ENSP00000249499	ENSP00000249499	HOXD9	q5	244.5	4	40177480	40179364	1	2	88.3%	47.5%	834	0.6 / 0.64 = 0.94	between_species_paralog:ENSBTAG00000011476_(ENSBTAP00000015252)	3
49	1848	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	4	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
49	1848	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	4	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
49	1848	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	4	p10	---	ENSP00000302548	ENSP00000302548	HOXD4	noMatch
49	1848	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	4	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
49	1848	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	4	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
49	1848	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	4	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
49	1848	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	4	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
50	1826	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	16	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
50	1826	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	16	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
50	1826	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	16	p3	q1	ENSP00000249505	ENSP00000249505	HOXD13	q1	228	16	32951572	32953191	-1	2	71.3%	47.7%	669	0.61 / 0.64 = 0.95	between_species_paralog:ENSMMUG00000020872_(ENSMMUP00000027467)	2
50	1826	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	16	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
50	1826	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	16	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
50	1826	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	16	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	q2
50	1826	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	16	p7	q2	ENSP00000249499	ENSP00000249499	HOXD9	q2	145	16	32852664	32852885	-1	1	21.6%	89.2%	222	0.6 / 0.78 = 0.77	between_species_paralog:ENSMMUG00000020869_(ENSMMUP00000027464)	5
50	1826	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	16	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
50	1826	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	16	p9	q3	ENSP00000315949	ENSP00000315949	HOXD8	q3	269	16	32842665	32844111	-1	2	94.8%	53.3%	672	0.49 / 0.5 = 0.98	between_species_paralog:ENSMMUG00000020868_(ENSMMUP00000027463)	3
50	1826	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	16	p10	q7	ENSP00000302548	ENSP00000302548	HOXD4	q7	160	16	32806520	32806789	-1	1	35.3%	83.3%	270	0.51 / 0.7 = 0.73	between_species_paralog:ENSMMUG00000020864_(ENSMMUP00000027459)	3
50	1826	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	16	p11	q8	ENSP00000249440	ENSP00000249440	HOXD3	q8	311	16	32779070	32781210	-1	2	85.6%	47.5%	1080	0.56 / 0.66 = 0.85	NOMATCH:	3
50	1826	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	16	p12	q10	ENSP00000328598	ENSP00000328598	HOXD1	q10	120	16	32758415	32758756	-1	1	33.8%	58.5%	342	0.79 / 0.8 = 0.99	NOMATCH:ENSMMUG00000022212(ENSMMUP00000029241);	3
50	1826	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	16	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
50	1826	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	16	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
51	1823	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	2	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
51	1823	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	2	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
51	1823	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	2	p3	q1	ENSP00000249505	ENSP00000249505	HOXD13	q1	239	2	201363760	201365718	-1	2	97%	39.1%	900	0.61 / 0.63 = 0.97	between_species_paralog:ENSMODG00000012310_(ENSMODP00000015421)	3
51	1823	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	2	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
51	1823	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	2	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	q2
51	1823	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	2	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	q2
51	1823	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	2	p7	q2	ENSP00000249499	ENSP00000249499	HOXD9	q2	145	2	201204831	201205052	-1	1	21.6%	89.2%	222	0.6 / 0.78 = 0.77	between_species_paralog:ENSMODG00000012329_(ENSMODP00000015444)	2
51	1823	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	2	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
51	1823	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	2	p9	q4	ENSP00000315949	ENSP00000315949	HOXD8	q4	113	2	201175565	201175924	-1	1	41.7%	51.2%	360	0.49 / 0.79 = 0.62	NOMATCH:ENSMODG00000012334(ENSMODP00000015452);	3
51	1823	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	2	p10	q6	ENSP00000302548	ENSP00000302548	HOXD4	q6	252.4	2	201153490	201155052	-1	2	91.4%	57.1%	693	0.51 / 0.54 = 0.94	between_species_paralog:ENSMODG00000012340_(ENSMODP00000015460)	2
51	1823	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	2	p11	q7	ENSP00000249440	ENSP00000249440	HOXD3	q7	399	2	201123983	201126209	-1	2	95.1%	53.7%	1203	0.56 / 0.56 = 1	between_species_paralog:ENSMODG00000012344_(ENSMODP00000015463)	2
51	1823	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	2	p12	q9	ENSP00000328598	ENSP00000328598	HOXD1	q9	115	2	201105136	201105375	-1	1	24.4%	71.6%	240	0.79 / 0.81 = 0.98	NOMATCH:ENSMODG00000012351(ENSMODP00000015472);	3
51	1823	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	2	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
51	1823	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	2	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
52	1758	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupVI	p1	q1	ENSP00000272748	ENSP00000272748	KIAA1715	q1	288.8	groupVI	16143064	16145858	-1	4	43.9%	51.8%	825	1 / 0.63 = 1.59	ortholog_one2many:ENSGACG00000011901_(ENSGACP00000015738)	1
52	1758	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupVI	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
52	1758	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupVI	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
52	1758	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupVI	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
52	1758	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupVI	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
52	1758	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupVI	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	q2
52	1758	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupVI	p7	q2	ENSP00000249499	ENSP00000249499	HOXD9	q2	134	groupVI	16162358	16162570	1	1	20.8%	87.3%	213	0.6 / 0.8 = 0.75	NOMATCH:ENSGACG00000011902(ENSGACP00000015743);	6
52	1758	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupVI	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
52	1758	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupVI	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
52	1758	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupVI	p10	q3	ENSP00000302548	ENSP00000302548	HOXD4	q3	208.9	groupVI	16181214	16182596	1	2	88.2%	49%	684	0.51 / 0.62 = 0.82	NOMATCH:ENSGACG00000011907(ENSGACP00000015747);	5
52	1758	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupVI	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
52	1758	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupVI	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
52	1758	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupVI	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
52	1758	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupVI	p14	q4	ENSP00000249442	ENSP00000249442	MTX2	q4	381.3	groupVI	16186214	16188136	1	6	85.9%	61.3%	891	0.55 / 0.16 = 3.44	ortholog_one2one:ENSGACG00000011909_(ENSGACP00000015763)	1
#
##################################################################
#
53	1631	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	16	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
53	1631	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	16	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
53	1631	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	16	p3	q1	ENSP00000249505	ENSP00000249505	HOXD13	q1	240	16	21167839	21168969	1	2	78.2%	51.9%	714	0.61 / 0.62 = 0.98	between_species_paralog:ENSDARG00000036254_(ENSDARP00000052661 [hoxa13b])	4
53	1631	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	16	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
53	1631	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	16	p5	q2	ENSP00000249504	ENSP00000249504	HOXD11	q2	252	16	21177655	21179247	1	2	85.8%	49.5%	765	0.53 / 0.54 = 0.98	between_species_paralog:ENSDARG00000007009_(ENSDARP00000005174 [hoxa11b])	2
53	1631	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	16	p6	q3	ENSP00000249501	ENSP00000249501	HOXD10	q3	280	16	21183004	21185153	1	2	74.7%	59.7%	759	0.58 / 0.59 = 0.98	NOMATCH:ENSDARG00000031337(ENSDARP00000046765 [hoxa10b]);	3
53	1631	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	16	p7	q4	ENSP00000249499	ENSP00000249499	HOXD9	q4	203.6	16	21188212	21189729	1	2	56.1%	57%	543	0.6 / 0.7 = 0.86	between_species_paralog:ENSDARG00000056819_(ENSDARP00000073839 [hoxa9b])	2
53	1631	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	16	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
53	1631	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	16	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
53	1631	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	16	p10	---	ENSP00000302548	ENSP00000302548	HOXD4	noMatch
53	1631	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	16	p11	q5	ENSP00000249440	ENSP00000249440	HOXD3	q5	105	16	21200887	21201078	1	1	14.8%	71.9%	192	0.56 / 0.88 = 0.64	NOMATCH:ENSDARG00000023031(ENSDARP00000023072 [hoxa2b]);	5
53	1631	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	16	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
53	1631	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	16	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
53	1631	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	16	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
54	1586	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	15	p1	q1	ENSP00000272748	ENSP00000272748	KIAA1715	q1	297.7	15	4394562	4400015	1	5	57%	51.4%	849	1 / 0.62 = 1.61	ortholog_one2many:ENSORLG00000001366_(ENSORLP00000001687)	1
54	1586	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	15	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
54	1586	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	15	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
54	1586	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	15	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
54	1586	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	15	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
54	1586	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	15	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	q2
54	1586	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	15	p7	q2	ENSP00000249499	ENSP00000249499	HOXD9	q2	133	15	4374398	4374607	-1	1	20.5%	87.1%	210	0.6 / 0.8 = 0.75	NOMATCH:ENSORLG00000001349(ENSORLP00000001666 [Q9PVR1_ORYLA]);	6
54	1586	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	15	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
54	1586	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	15	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
54	1586	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	15	p10	q3	ENSP00000302548	ENSP00000302548	HOXD4	q3	217.9	15	4350793	4351949	-1	2	91%	52.1%	699	0.51 / 0.6 = 0.85	NOMATCH:ENSORLG00000001346(ENSORLP00000001659 [Q3V5Z3_ORYLA]);	5
54	1586	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	15	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
54	1586	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	15	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
54	1586	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	15	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
54	1586	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	15	p14	q4	ENSP00000249442	ENSP00000249442	MTX2	q4	290.7	15	4337486	4342821	-1	4	65.8%	67.2%	603	0.55 / 0.36 = 1.53	ortholog_one2one:ENSORLG00000001332_(ENSORLP00000001650)	1
#
##################################################################
#
55	1570	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_39	p1	q1	ENSP00000272748	ENSP00000272748	KIAA1715	q1	348.3	scaffold_39	568162	571367	-1	6	55.1%	54.5%	960	1 / 0.55 = 1.82	NOMATCH:NEWSINFRUG00000161011(NEWSINFRUP00000173786);NEWSINFRUG00000164545(NEWSINFRUP00000179320);NEWSINFRUG00000148695(NEWSINFRUP00000158053);	1
55	1570	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_39	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
55	1570	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_39	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
55	1570	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_39	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
55	1570	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_39	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
55	1570	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_39	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	q2
55	1570	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_39	p7	q2	ENSP00000249499	ENSP00000249499	HOXD9	q2	132	scaffold_39	584702	584911	1	1	20.5%	85.7%	210	0.6 / 0.8 = 0.75	NOMATCH:NEWSINFRUG00000156364(NEWSINFRUP00000177370 [Q4VN43_FUGRU]);	6
55	1570	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_39	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
55	1570	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_39	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
55	1570	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_39	p10	q3	ENSP00000302548	ENSP00000302548	HOXD4	q3	201.5	scaffold_39	597373	598598	1	2	83.9%	47.6%	654	0.51 / 0.63 = 0.81	NOMATCH:NEWSINFRUG00000162165(NEWSINFRUP00000181370);	5
55	1570	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_39	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
55	1570	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_39	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
55	1570	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_39	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
55	1570	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_39	p14	q4	ENSP00000249442	ENSP00000249442	MTX2	q4	268.7	scaffold_39	601883	603036	1	4	82.5%	49.5%	876	0.55 / 0.4 = 1.38	ortholog_one2one:NEWSINFRUG00000144217_(NEWSINFRUP00000153158)	1
#
##################################################################
#
56	1459	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2344	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
56	1459	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2344	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
56	1459	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2344	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
56	1459	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2344	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
56	1459	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2344	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
56	1459	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2344	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	q1
56	1459	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2344	p7	q1	ENSP00000249499	ENSP00000249499	HOXD9	q1	144	contig_2344	65914	66156	-1	1	23.7%	81.5%	243	0.6 / 0.78 = 0.77	NOMATCH:	5
56	1459	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2344	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
56	1459	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2344	p9	q2	ENSP00000315949	ENSP00000315949	HOXD8	q2	118	contig_2344	60643	60930	-1	1	32.4%	61.5%	288	0.49 / 0.78 = 0.63	NOMATCH:ENSGACG00000007112(ENSGACP00000009429);	2
56	1459	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2344	p10	q4	ENSP00000302548	ENSP00000302548	HOXD4	q4	250.6	contig_2344	45010	46274	-1	2	95.3%	53.8%	732	0.51 / 0.54 = 0.94	NOMATCH:ENSGACG00000007100(ENSGACP00000009408);	4
56	1459	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2344	p11	q5	ENSP00000249440	ENSP00000249440	HOXD3	q5	365.3	contig_2344	30826	34266	-1	2	96.1%	49.2%	1245	0.56 / 0.6 = 0.93	NOMATCH:ENSGACG00000007094(ENSGACP00000009399);	2
56	1459	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2344	p12	q7	ENSP00000328598	ENSP00000328598	HOXD1	q7	127	contig_2344	19871	20197	-1	1	32%	60.6%	327	0.79 / 0.79 = 1	NOMATCH:ENSGACG00000007085(ENSGACP00000009383);	1
56	1459	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2344	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
56	1459	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2344	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
57	1430	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	16	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
57	1430	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	16	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
57	1430	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	16	p3	q1	ENSP00000249505	ENSP00000249505	HOXD13	q1	240	16	13115399	13116156	1	2	68.4%	57.5%	633	0.61 / 0.62 = 0.98	between_species_paralog:ENSORLG00000007597_(ENSORLP00000009523 [Q90ZG1_ORYLA])	4
57	1430	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	16	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
57	1430	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	16	p5	q2	ENSP00000249504	ENSP00000249504	HOXD11	q2	213.7	16	13120158	13121649	1	2	65.4%	49.6%	744	0.53 / 0.61 = 0.87	between_species_paralog:ENSORLG00000007608_(ENSORLP00000009534 [Q3V624_ORYLA])	4
57	1430	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	16	p6	q3	ENSP00000249501	ENSP00000249501	HOXD10	q3	259	16	13127649	13129140	1	2	95.3%	48%	927	0.58 / 0.62 = 0.94	NOMATCH:ENSORLG00000007617(ENSORLP00000009546 [Q3V625_ORYLA]);	3
57	1430	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	16	p7	q4	ENSP00000249499	ENSP00000249499	HOXD9	q4	134	16	13131568	13131795	1	1	22.2%	78.9%	228	0.6 / 0.8 = 0.75	between_species_paralog:ENSORLG00000007620_(ENSORLP00000009549 [Q3V626_ORYLA])	5
57	1430	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	16	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
57	1430	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	16	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
57	1430	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	16	p10	---	ENSP00000302548	ENSP00000302548	HOXD4	noMatch
57	1430	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	16	p11	q5	ENSP00000249440	ENSP00000249440	HOXD3	q5	106	16	13136775	13137005	1	1	17.8%	63.6%	231	0.56 / 0.88 = 0.64	NOMATCH:ENSORLG00000007624(ENSORLP00000009553 [Q3V627_ORYLA]);	7
57	1430	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	16	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
57	1430	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	16	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
57	1430	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	16	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
58	1342	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	19	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
58	1342	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	19	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
58	1342	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	19	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
58	1342	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	19	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
58	1342	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	19	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	q1
58	1342	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	19	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	q1
58	1342	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	19	p7	q1	ENSP00000249499	ENSP00000249499	HOXD9	q1	145	19	31239444	31239665	-1	1	21.6%	89.2%	222	0.6 / 0.78 = 0.77	between_species_paralog:ENSBTAG00000025009_(ENSBTAP00000034772)	4
58	1342	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	19	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
58	1342	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	19	p9	q2	ENSP00000315949	ENSP00000315949	HOXD8	q2	150	19	31230187	31230462	-1	1	33.4%	78.4%	276	0.49 / 0.72 = 0.68	NOMATCH:	3
58	1342	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	19	p10	q4	ENSP00000302548	ENSP00000302548	HOXD4	q4	160	19	31195664	31195918	-1	1	33.3%	87.1%	255	0.51 / 0.7 = 0.73	NOMATCH:ENSBTAG00000021459(ENSBTAP00000007291,ENSBTAP00000028606);	4
58	1342	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	19	p11	q5	ENSP00000249440	ENSP00000249440	HOXD3	q5	368	19	30606318	30608469	-1	2	76.2%	57.5%	1002	0.56 / 0.59 = 0.95	between_species_paralog:ENSBTAG00000021427_(ENSBTAP00000028563)	3
58	1342	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	19	p12	q7	ENSP00000328598	ENSP00000328598	HOXD1	q7	118	19	30587828	30588133	-1	1	32.3%	60.4%	306	0.79 / 0.81 = 0.98	NOMATCH:ENSBTAG00000007603(ENSBTAP00000009997);	3
58	1342	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	19	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
58	1342	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	19	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
59	1333	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_1095	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
59	1333	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_1095	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
59	1333	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_1095	p3	q1	ENSP00000249505	ENSP00000249505	HOXD13	q1	237	contig_1095	26570	27476	1	2	67.8%	55.4%	627	0.61 / 0.63 = 0.97	NOMATCH:ENSGACG00000008296(ENSGACP00000010963);	5
59	1333	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_1095	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
59	1333	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_1095	p5	q2	ENSP00000249504	ENSP00000249504	HOXD11	q2	249	contig_1095	32620	34350	1	2	97.3%	43.5%	861	0.53 / 0.55 = 0.96	NOMATCH:ENSGACG00000008297(ENSGACP00000010970);	3
59	1333	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_1095	p6	q3	ENSP00000249501	ENSP00000249501	HOXD10	q3	154	contig_1095	39804	40055	1	1	24.7%	88.1%	252	0.58 / 0.77 = 0.75	NOMATCH:ENSGACG00000008303(ENSGACP00000010981);	4
59	1333	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_1095	p7	q4	ENSP00000249499	ENSP00000249499	HOXD9	q4	130	contig_1095	43335	43559	1	1	21.9%	77.3%	225	0.6 / 0.8 = 0.75	NOMATCH:ENSGACG00000008310(ENSGACP00000010987);	7
59	1333	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_1095	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
59	1333	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_1095	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
59	1333	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_1095	p10	---	ENSP00000302548	ENSP00000302548	HOXD4	noMatch
59	1333	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_1095	p11	q5	ENSP00000249440	ENSP00000249440	HOXD3	q5	108	contig_1095	49436	49675	1	1	18.5%	62.5%	240	0.56 / 0.88 = 0.64	NOMATCH:ENSGACG00000008314(ENSGACP00000010989);	6
59	1333	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_1095	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
59	1333	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_1095	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
59	1333	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_1095	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
60	1333	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXX	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
60	1333	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXX	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
60	1333	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXX	p3	q1	ENSP00000249505	ENSP00000249505	HOXD13	q1	237	groupXX	9710810	9711716	1	2	67.8%	55.4%	627	0.61 / 0.63 = 0.97	between_species_paralog:ENSGACG00000008296_(ENSGACP00000010963)	5
60	1333	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXX	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
60	1333	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXX	p5	q2	ENSP00000249504	ENSP00000249504	HOXD11	q2	249	groupXX	9716860	9718590	1	2	97.3%	43.5%	861	0.53 / 0.55 = 0.96	between_species_paralog:ENSGACG00000008297_(ENSGACP00000010970)	3
60	1333	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXX	p6	q3	ENSP00000249501	ENSP00000249501	HOXD10	q3	154	groupXX	9724044	9724295	1	1	24.7%	88.1%	252	0.58 / 0.77 = 0.75	NOMATCH:ENSGACG00000008303(ENSGACP00000010981);	4
60	1333	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXX	p7	q4	ENSP00000249499	ENSP00000249499	HOXD9	q4	130	groupXX	9727575	9727799	1	1	21.9%	77.3%	225	0.6 / 0.8 = 0.75	between_species_paralog:ENSGACG00000008310_(ENSGACP00000010987)	7
60	1333	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXX	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
60	1333	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXX	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
60	1333	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXX	p10	---	ENSP00000302548	ENSP00000302548	HOXD4	noMatch
60	1333	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXX	p11	q5	ENSP00000249440	ENSP00000249440	HOXD3	q5	108	groupXX	9733676	9733915	1	1	18.5%	62.5%	240	0.56 / 0.88 = 0.64	NOMATCH:ENSGACG00000008314(ENSGACP00000010989);	6
60	1333	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXX	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
60	1333	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXX	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
60	1333	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupXX	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
61	1318	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2643	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
61	1318	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2643	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
61	1318	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2643	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
61	1318	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2643	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
61	1318	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2643	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
61	1318	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2643	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	q1
61	1318	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2643	p7	q1	ENSP00000249499	ENSP00000249499	HOXD9	q1	254	contig_2643	45188	46955	-1	2	66.7%	58.1%	591	0.6 / 0.62 = 0.97	NOMATCH:ENSGACG00000009396(ENSGACP00000012392);	1
61	1318	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2643	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
61	1318	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2643	p9	q2	ENSP00000315949	ENSP00000315949	HOXD8	q2	274	contig_2643	39207	41140	-1	2	90.3%	54.9%	672	0.49 / 0.49 = 1	NOMATCH:ENSGACG00000009401(ENSGACP00000012396,ENSGACP00000012399);	1
61	1318	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2643	p10	q5	ENSP00000302548	ENSP00000302548	HOXD4	q5	257.1	contig_2643	14513	15813	-1	2	100%	53.8%	792	0.51 / 0.53 = 0.96	NOMATCH:ENSGACG00000009421(ENSGACP00000012427);	2
61	1318	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2643	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
61	1318	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2643	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
61	1318	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2643	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
61	1318	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2643	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
62	1305	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_48	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
62	1305	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_48	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
62	1305	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_48	p3	q1	ENSP00000249505	ENSP00000249505	HOXD13	q1	210	scaffold_48	1084995	1085777	-1	1	70.7%	45.9%	783	0.61 / 0.67 = 0.91	between_species_paralog:NEWSINFRUG00000132089_(NEWSINFRUP00000139875)	6
62	1305	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_48	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
62	1305	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_48	p5	q2	ENSP00000249504	ENSP00000249504	HOXD11	q2	255	scaffold_48	1078635	1080372	-1	2	94.7%	44.7%	858	0.53 / 0.54 = 0.98	between_species_paralog:NEWSINFRUG00000138060_(NEWSINFRUP00000146418)	2
62	1305	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_48	p6	q4	ENSP00000249501	ENSP00000249501	HOXD10	q4	155	scaffold_48	1066192	1066455	-1	1	26.2%	85.4%	264	0.58 / 0.77 = 0.75	NOMATCH:NEWSINFRUG00000138061(NEWSINFRUP00000146419);	4
62	1305	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_48	p7	q5	ENSP00000249499	ENSP00000249499	HOXD9	q5	137	scaffold_48	1063108	1063341	-1	1	22.8%	79.5%	234	0.6 / 0.79 = 0.76	between_species_paralog:NEWSINFRUG00000138062_(NEWSINFRUP00000146420)	5
62	1305	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_48	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
62	1305	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_48	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
62	1305	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_48	p10	---	ENSP00000302548	ENSP00000302548	HOXD4	noMatch
62	1305	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_48	p11	q6	ENSP00000249440	ENSP00000249440	HOXD3	q6	108	scaffold_48	1057105	1057341	-1	1	18.3%	62%	237	0.56 / 0.88 = 0.64	NOMATCH:NEWSINFRUG00000138063(NEWSINFRUP00000146421);	6
62	1305	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_48	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
62	1305	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_48	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
62	1305	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_48	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
63	1305	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	8	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
63	1305	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	8	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
63	1305	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	8	p3	q1	ENSP00000249505	ENSP00000249505	HOXD13	q1	115	8	6607043	6607240	1	1	19.7%	84.8%	198	0.61 / 0.82 = 0.74	between_species_paralog:HOXAb13_(HOXAb13 [HOXAb13])
between_species_paralog:GSTENG00034119001_(GSTENP00034119001 [GSTENT00034119001])	4
63	1305	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	8	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
63	1305	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	8	p5	q2	ENSP00000249504	ENSP00000249504	HOXD11	q2	229.3	8	6611319	6613072	1	2	44.1%	72.8%	450	0.53 / 0.58 = 0.91	between_species_paralog:GSTENG00034118001_(GSTENP00034118001 [GSTENT00034118001])
between_species_paralog:HOXAb11_(HOXAb11 [HOXAb11])	3
63	1305	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	8	p6	q3	ENSP00000249501	ENSP00000249501	HOXD10	q3	286.3	8	6616572	6618000	1	3	96.5%	50%	924	0.58 / 0.58 = 1	NOMATCH:GSTENG00034117001(GSTENP00034117001 [GSTENT00034117001]);HOXAb10(HOXAb10 [HOXAb10]);	2
63	1305	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	8	p7	q4	ENSP00000249499	ENSP00000249499	HOXD9	q4	135	8	6620992	6621216	1	1	21.9%	81.3%	225	0.6 / 0.8 = 0.75	between_species_paralog:HOXAb9_(HOXAb9 [HOXAb9])	5
63	1305	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	8	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
63	1305	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	8	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
63	1305	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	8	p10	---	ENSP00000302548	ENSP00000302548	HOXD4	noMatch
63	1305	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	8	p11	q5	ENSP00000249440	ENSP00000249440	HOXD3	q5	104	8	6626881	6627078	1	1	15.3%	69.7%	198	0.56 / 0.88 = 0.64	NOMATCH:HOXAb2(HOXAb2 [HOXAb2]);GSTENG00034116001(GSTENP00034116001 [GSTENT00034116001]);	7
63	1305	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	8	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
63	1305	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	8	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
63	1305	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	8	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
64	1224	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2345	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
64	1224	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2345	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
64	1224	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2345	p3	q1	ENSP00000249505	ENSP00000249505	HOXD13	q1	249	contig_2345	22662	23907	-1	2	72.2%	56.9%	687	0.61 / 0.61 = 1	NOMATCH:ENSGACG00000007134(ENSGACP00000009457 [Q9PWC4_GASAC],ENSGACP00000009458 [Q9PWC4_GASAC]);	4
64	1224	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2345	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
64	1224	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2345	p5	q2	ENSP00000249504	ENSP00000249504	HOXD11	q2	251	contig_2345	11804	13419	-1	2	84.6%	50.2%	807	0.53 / 0.54 = 0.98	NOMATCH:ENSGACG00000007132(ENSGACP00000009442);	2
64	1224	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2345	p6	q3	ENSP00000249501	ENSP00000249501	HOXD10	q3	271	contig_2345	4545	6319	-1	2	97.9%	49.4%	1038	0.58 / 0.6 = 0.97	NOMATCH:ENSGACG00000007128(ENSGACP00000009439);	2
64	1224	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2345	p7	---	ENSP00000249499	ENSP00000249499	HOXD9	q3
64	1224	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2345	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
64	1224	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2345	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
64	1224	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2345	p10	---	ENSP00000302548	ENSP00000302548	HOXD4	noMatch
64	1224	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2345	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
64	1224	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2345	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
64	1224	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2345	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
64	1224	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2345	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
65	1192	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	17	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
65	1192	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	17	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
65	1192	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	17	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
65	1192	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	17	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
65	1192	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	17	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
65	1192	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	17	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	q1
65	1192	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	17	p7	q1	ENSP00000249499	ENSP00000249499	HOXD9	q1	113	17	9576378	9576557	1	1	17.5%	85%	180	0.6 / 0.83 = 0.72	NOMATCH:HOXDb9(HOXDb9 [HOXDb9]);GSTENG00018723001(GSTENP00018723001 [GSTENT00018723001]);	9
65	1192	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	17	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
65	1192	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	17	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
65	1192	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	17	p10	q2	ENSP00000302548	ENSP00000302548	HOXD4	q2	206.5	17	9593474	9594639	1	2	85.5%	48.9%	666	0.51 / 0.62 = 0.82	NOMATCH:GSTENG00018723001(GSTENP00018723001 [GSTENT00018723001]);HOXDb4(HOXDb4 [HOXDb4]);	5
65	1192	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	17	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
65	1192	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	17	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
65	1192	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	17	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
65	1192	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	17	p14	q3	ENSP00000249442	ENSP00000249442	MTX2	q3	301.6	17	9597464	9598839	1	5	68.4%	60.3%	696	0.55 / 0.33 = 1.67	ortholog_one2one:GSTENG00018722001_(GSTENP00018722001 [GSTENT00018722001])	1
#
##################################################################
#
66	1158	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	4	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
66	1158	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	4	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
66	1158	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	4	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
66	1158	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	4	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
66	1158	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	4	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
66	1158	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	4	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	noMatch
66	1158	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	4	p7	---	ENSP00000249499	ENSP00000249499	HOXD9	noMatch
66	1158	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	4	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
66	1158	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	4	p9	q1	ENSP00000315949	ENSP00000315949	HOXD8	q1	114	4	37099440	37099640	1	1	23.1%	76.1%	201	0.49 / 0.79 = 0.62	NOMATCH:ENSBTAG00000001455(ENSBTAP00000001908);	4
66	1158	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	4	p10	q4	ENSP00000302548	ENSP00000302548	HOXD4	q4	170	4	37124791	37125126	1	1	43.1%	75.9%	336	0.51 / 0.69 = 0.74	between_species_paralog:ENSBTAG00000001063_(ENSBTAP00000001409)	3
66	1158	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	4	p11	q5	ENSP00000249440	ENSP00000249440	HOXD3	q5	426.7	4	37142956	37145704	1	3	96.3%	53.5%	1254	0.56 / 0.53 = 1.06	between_species_paralog:ENSBTAG00000008139_(ENSBTAP00000010700)	2
66	1158	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	4	p12	q7	ENSP00000328598	ENSP00000328598	HOXD1	q7	130	4	37158853	37159134	1	1	33.8%	62.2%	282	0.79 / 0.79 = 1	NOMATCH:ENSBTAG00000013263(ENSBTAP00000001367);	2
66	1158	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	4	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
66	1158	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	4	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
67	1095	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_4903	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
67	1095	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_4903	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
67	1095	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_4903	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
67	1095	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_4903	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
67	1095	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_4903	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
67	1095	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_4903	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	noMatch
67	1095	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_4903	p7	---	ENSP00000249499	ENSP00000249499	HOXD9	noMatch
67	1095	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_4903	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
67	1095	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_4903	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
67	1095	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_4903	p10	q1	ENSP00000302548	ENSP00000302548	HOXD4	q1	145	contig_4903	10671	10922	-1	1	32.9%	77.4%	252	0.51 / 0.73 = 0.7	NOMATCH:	6
67	1095	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_4903	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
67	1095	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_4903	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
67	1095	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_4903	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
67	1095	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_4903	p14	q2	ENSP00000249442	ENSP00000249442	MTX2	q2	381.3	contig_4903	5131	7053	-1	6	85.9%	61.3%	891	0.55 / 0.16 = 3.44	NOMATCH:ENSGACG00000011909(ENSGACP00000015763,ENSGACP00000015769);	1
#
##################################################################
#
68	937	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	12	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
68	937	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	12	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
68	937	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	12	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
68	937	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	12	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
68	937	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	12	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
68	937	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	12	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	noMatch
68	937	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	12	p7	---	ENSP00000249499	ENSP00000249499	HOXD9	noMatch
68	937	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	12	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
68	937	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	12	p9	q1	ENSP00000315949	ENSP00000315949	HOXD8	q1,q8	215.6	12	34671599	34673873	-1	2	99%	43%	717	0.49 / 0.6 = 0.82	between_species_paralog:ENSDARG00000054025_(ENSDARP00000070632 [hoxb8b])	3
68	937	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	12	p10	q2	ENSP00000302548	ENSP00000302548	HOXD4	q3,q6	111	12	34663066	34663269	-1	1	26.7%	75%	204	0.51 / 0.79 = 0.65	NOMATCH:ENSDARG00000026513(ENSDARP00000070636 [hoxb6b]);	10
68	937	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	12	p11	q3	ENSP00000249440	ENSP00000249440	HOXD3	q3,q6	100	12	34660365	34660568	-1	1	15.7%	70.6%	204	0.56 / 0.89 = 0.63	NOMATCH:ENSDARG00000054030(ENSDARP00000070639 [hoxb5b]);	7
68	937	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	12	p12	q4	ENSP00000328598	ENSP00000328598	HOXD1	q5	150	12	34648904	34649358	-1	2	41.5%	57.2%	372	0.79 / 0.76 = 1.04	NOMATCH:ENSDARG00000054033(ENSDARP00000070641);	2
68	937	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	12	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
68	937	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	12	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
69	925	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_346	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
69	925	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_346	p2	q1	ENSP00000312385	ENSP00000312385	EVX2	q1	307	scaffold_346	186282	187332	-1	2	62.6%	54.2%	699	0.62 / 0.62 = 1	between_species_paralog:NEWSINFRUG00000165271_(NEWSINFRUP00000180461)	2
69	925	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_346	p3	q2	ENSP00000249505	ENSP00000249505	HOXD13	q2	219.4	scaffold_346	195273	196163	1	2	45.7%	69%	474	0.61 / 0.66 = 0.92	between_species_paralog:NEWSINFRUG00000162059_(NEWSINFRUP00000179236)	5
69	925	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_346	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
69	925	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_346	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
69	925	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_346	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	noMatch
69	925	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_346	p7	---	ENSP00000249499	ENSP00000249499	HOXD9	noMatch
69	925	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_346	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
69	925	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_346	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	q3
69	925	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_346	p10	q3	ENSP00000302548	ENSP00000302548	HOXD4	q3	123	scaffold_346	226202	226399	1	1	25.9%	87.9%	198	0.51 / 0.77 = 0.66	NOMATCH:NEWSINFRUG00000149630(NEWSINFRUP00000159074);	6
69	925	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_346	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	q3
69	925	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_346	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
69	925	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_346	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
69	925	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_346	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
70	755	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	19	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
70	755	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	19	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
70	755	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	19	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
70	755	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	19	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
70	755	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	19	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
70	755	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	19	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	noMatch
70	755	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	19	p7	---	ENSP00000249499	ENSP00000249499	HOXD9	noMatch
70	755	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	19	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
70	755	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	19	p9	q1	ENSP00000315949	ENSP00000315949	HOXD8	q1	113	19	17592687	17592911	-1	1	24.8%	72%	225	0.49 / 0.79 = 0.62	NOMATCH:ENSORLG00000012387(ENSORLP00000015504 [Q9PVR5_ORYLA]);	3
70	755	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	19	p10	q2	ENSP00000302548	ENSP00000302548	HOXD4	q2	123	19	17590258	17590455	-1	1	25.9%	87.9%	198	0.51 / 0.77 = 0.66	NOMATCH:ENSORLG00000012379(ENSORLP00000015495 [Q3V611_ORYLA]);	7
70	755	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	19	p11	q3	ENSP00000249440	ENSP00000249440	HOXD3	q3	135	19	17580611	17581051	-1	1	34.3%	54.6%	441	0.56 / 0.85 = 0.66	NOMATCH:ENSORLG00000012375(ENSORLP00000015488 [Q3V612_ORYLA]);	4
70	755	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	19	p12	q4	ENSP00000328598	ENSP00000328598	HOXD1	q4	113	19	17578472	17578684	-1	1	21.6%	76.1%	213	0.79 / 0.82 = 0.96	NOMATCH:ENSORLG00000012369(ENSORLP00000015484 [Q3V613_ORYLA]);	3
70	755	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	19	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
70	755	HOXD9_ENSG00000128709_5e5.protein.info	Oryzias_latipes	19	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
71	744	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_130	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
71	744	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_130	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
71	744	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_130	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
71	744	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_130	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
71	744	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_130	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
71	744	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_130	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	noMatch
71	744	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_130	p7	---	ENSP00000249499	ENSP00000249499	HOXD9	noMatch
71	744	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_130	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
71	744	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_130	p9	q1	ENSP00000315949	ENSP00000315949	HOXD8	q1	114	scaffold_130	628828	629052	1	1	24.8%	73.3%	225	0.49 / 0.79 = 0.62	NOMATCH:NEWSINFRUG00000156875(NEWSINFRUP00000170417);	4
71	744	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_130	p10	q2	ENSP00000302548	ENSP00000302548	HOXD4	q2	123	scaffold_130	631301	631498	1	1	25.9%	87.9%	198	0.51 / 0.77 = 0.66	NOMATCH:NEWSINFRUG00000132774(NEWSINFRUP00000140621);	6
71	744	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_130	p11	q3	ENSP00000249440	ENSP00000249440	HOXD3	q3	122	scaffold_130	639531	639938	1	1	32.2%	53.2%	408	0.56 / 0.86 = 0.65	NOMATCH:NEWSINFRUG00000161068(NEWSINFRUP00000178747);	4
71	744	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_130	p12	q4	ENSP00000328598	ENSP00000328598	HOXD1	q4	114	scaffold_130	642031	642252	1	1	22.6%	73%	222	0.79 / 0.81 = 0.98	NOMATCH:NEWSINFRUG00000131120(NEWSINFRUP00000138806);	3
71	744	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_130	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
71	744	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_130	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
72	724	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	2	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
72	724	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	2	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
72	724	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	2	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
72	724	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	2	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
72	724	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	2	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
72	724	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	2	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	noMatch
72	724	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	2	p7	---	ENSP00000249499	ENSP00000249499	HOXD9	noMatch
72	724	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	2	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
72	724	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	2	p9	q1	ENSP00000315949	ENSP00000315949	HOXD8	q1	112	2	1435444	1435620	-1	1	20.3%	86.4%	177	0.49 / 0.79 = 0.62	NOMATCH:GSTENG00019143001(GSTENP00019143001 [GSTENT00019143001]);HOXBb6(HOXBb6 [HOXBb6]);	3
72	724	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	2	p10	q2	ENSP00000302548	ENSP00000302548	HOXD4	q2	123	2	1432934	1433131	-1	1	25.9%	87.9%	198	0.51 / 0.77 = 0.66	NOMATCH:GSTENG00019143001(GSTENP00019143001 [GSTENT00019143001]);HOXBb5(HOXBb5 [HOXBb5]);	7
72	724	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	2	p11	q3	ENSP00000249440	ENSP00000249440	HOXD3	q3	105	2	1424212	1424418	-1	1	16%	76.8%	207	0.56 / 0.88 = 0.64	NOMATCH:GSTENG00019144001(GSTENP00019144001 [GSTENT00019144001]);HOXBb3(HOXBb3 [HOXBb3]);	6
72	724	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	2	p12	q4	ENSP00000328598	ENSP00000328598	HOXD1	q4	115	2	1421876	1422091	-1	1	22%	75%	216	0.79 / 0.81 = 0.98	NOMATCH:GSTENG00019145001(GSTENP00019145001 [GSTENT00019145001]);HOXBb1(HOXBb1 [HOXBb1]);	2
72	724	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	2	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
72	724	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	2	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
73	710	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
73	710	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
73	710	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
73	710	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
73	710	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
73	710	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	noMatch
73	710	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p7	---	ENSP00000249499	ENSP00000249499	HOXD9	noMatch
73	710	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
73	710	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p9	q1	ENSP00000315949	ENSP00000315949	HOXD8	q1	275	3	24715898	24717334	-1	2	95.9%	52.7%	681	0.49 / 0.49 = 1	between_species_paralog:ENSDARG00000055795_(ENSDARP00000072653 [hoxb8a])	2
73	710	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p10	q2	ENSP00000302548	ENSP00000302548	HOXD4	q2	114	3	24709982	24710179	-1	1	25.9%	77.3%	198	0.51 / 0.79 = 0.65	NOMATCH:ENSDARG00000055796(ENSDARP00000072658 [hoxb7a]);	9
73	710	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
73	710	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
73	710	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
73	710	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
74	551	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_4905	p1	q1	ENSP00000272748	ENSP00000272748	KIAA1715	q1	288.8	contig_4905	32589	35383	1	4	43.9%	51.8%	825	1 / 0.63 = 1.59	NOMATCH:ENSGACG00000011901(ENSGACP00000015738);	1
74	551	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_4905	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
74	551	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_4905	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
74	551	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_4905	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
74	551	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_4905	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
74	551	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_4905	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	q2
74	551	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_4905	p7	q2	ENSP00000249499	ENSP00000249499	HOXD9	q2	134	contig_4905	15877	16089	-1	1	20.8%	87.3%	213	0.6 / 0.8 = 0.75	NOMATCH:ENSGACG00000011902(ENSGACP00000015743);	6
74	551	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_4905	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
74	551	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_4905	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
74	551	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_4905	p10	---	ENSP00000302548	ENSP00000302548	HOXD4	noMatch
74	551	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_4905	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
74	551	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_4905	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
74	551	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_4905	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
74	551	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_4905	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
75	536	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_6417	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
75	536	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_6417	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
75	536	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_6417	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
75	536	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_6417	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
75	536	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_6417	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
75	536	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_6417	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	noMatch
75	536	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_6417	p7	---	ENSP00000249499	ENSP00000249499	HOXD9	noMatch
75	536	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_6417	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
75	536	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_6417	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	q1
75	536	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_6417	p10	q1	ENSP00000302548	ENSP00000302548	HOXD4	q1	123	contig_6417	45996	46193	-1	1	25.9%	87.9%	198	0.51 / 0.77 = 0.66	NOMATCH:	8
75	536	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_6417	p11	q2	ENSP00000249440	ENSP00000249440	HOXD3	q2	122	contig_6417	36453	36818	-1	1	26.2%	56.6%	366	0.56 / 0.86 = 0.65	NOMATCH:ENSGACG00000003942(ENSGACP00000005171);	4
75	536	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_6417	p12	q3	ENSP00000328598	ENSP00000328598	HOXD1	q3	114	contig_6417	33927	34151	-1	1	22.9%	70.7%	225	0.79 / 0.81 = 0.98	NOMATCH:ENSGACG00000003939(ENSGACP00000005168);	3
75	536	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_6417	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
75	536	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_6417	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
76	536	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupV	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
76	536	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupV	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
76	536	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupV	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
76	536	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupV	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
76	536	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupV	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
76	536	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupV	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	noMatch
76	536	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupV	p7	---	ENSP00000249499	ENSP00000249499	HOXD9	noMatch
76	536	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupV	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
76	536	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupV	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	q1
76	536	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupV	p10	q1	ENSP00000302548	ENSP00000302548	HOXD4	q1	123	groupV	4610478	4610675	-1	1	25.9%	87.9%	198	0.51 / 0.77 = 0.66	NOMATCH:ENSGACG00000003945(ENSGACP00000005174);	8
76	536	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupV	p11	q2	ENSP00000249440	ENSP00000249440	HOXD3	q2	122	groupV	4600935	4601300	-1	1	26.2%	56.6%	366	0.56 / 0.86 = 0.65	NOMATCH:ENSGACG00000003942(ENSGACP00000005171);	4
76	536	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupV	p12	q3	ENSP00000328598	ENSP00000328598	HOXD1	q3	114	groupV	4598409	4598633	-1	1	22.9%	70.7%	225	0.79 / 0.81 = 0.98	NOMATCH:ENSGACG00000003939(ENSGACP00000005168);	3
76	536	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupV	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
76	536	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	groupV	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
77	535	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
77	535	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
77	535	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
77	535	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
77	535	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
77	535	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	noMatch
77	535	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p7	---	ENSP00000249499	ENSP00000249499	HOXD9	noMatch
77	535	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
77	535	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
77	535	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p10	---	ENSP00000302548	ENSP00000302548	HOXD4	noMatch
77	535	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p11	q1	ENSP00000249440	ENSP00000249440	HOXD3	q1	491	Un_random	80676474	80677664	-1	3	88.9%	65.2%	1092	0.56 / 0.46 = 1.22	ortholog_one2many:GSTENG00003053001_(GSTENP00003053001 [GSTENT00003053001])	2
77	535	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
77	535	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
77	535	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
78	517	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9872	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
78	517	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9872	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
78	517	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9872	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
78	517	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9872	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
78	517	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9872	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
78	517	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9872	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	noMatch
78	517	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9872	p7	---	ENSP00000249499	ENSP00000249499	HOXD9	noMatch
78	517	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9872	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
78	517	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9872	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
78	517	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9872	p10	---	ENSP00000302548	ENSP00000302548	HOXD4	q1
78	517	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9872	p11	q1	ENSP00000249440	ENSP00000249440	HOXD3	q1	312	contig_9872	88587	92385	-1	2	79.9%	49.7%	1170	0.56 / 0.65 = 0.86	NOMATCH:ENSGACG00000005631(ENSGACP00000007432);	3
78	517	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9872	p12	q3	ENSP00000328598	ENSP00000328598	HOXD1	q3	118	contig_9872	61596	61883	-1	1	32.3%	61.3%	288	0.79 / 0.81 = 0.98	NOMATCH:ENSGACG00000005635(ENSGACP00000007437);	2
78	517	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9872	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
78	517	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9872	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
79	486	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	3	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
79	486	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	3	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
79	486	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	3	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
79	486	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	3	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
79	486	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	3	p5	q1	ENSP00000249504	ENSP00000249504	HOXD11	q1	105	3	695268	695510	-1	1	23.7%	61.7%	243	0.53 / 0.81 = 0.65	between_species_paralog:GSTENG00031863001_(GSTENP00031863001 [GSTENT00031863001])	5
79	486	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	3	p6	q2	ENSP00000249501	ENSP00000249501	HOXD10	q1	206.8	3	679911	682163	-1	2	81.5%	44.8%	840	0.58 / 0.7 = 0.83	NOMATCH:GSTENG00031864001(GSTENP00031864001 [GSTENT00031864001]);	5
79	486	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	3	p7	---	ENSP00000249499	ENSP00000249499	HOXD9	q1
79	486	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	3	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
79	486	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	3	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
79	486	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	3	p10	---	ENSP00000302548	ENSP00000302548	HOXD4	noMatch
79	486	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	3	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
79	486	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	3	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
79	486	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	3	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
79	486	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	3	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
80	462	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	21	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
80	462	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	21	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
80	462	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	21	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
80	462	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	21	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
80	462	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	21	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
80	462	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	21	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	noMatch
80	462	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	21	p7	---	ENSP00000249499	ENSP00000249499	HOXD9	noMatch
80	462	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	21	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
80	462	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	21	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
80	462	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	21	p10	---	ENSP00000302548	ENSP00000302548	HOXD4	noMatch
80	462	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	21	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
80	462	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	21	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
80	462	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	21	p13	q1	ENSP00000346209	ENSP00000346209	-	q1	105	21	30860717	30860908	-1	1	61.4%	78.6%	192	0.15 / 0.53 = 0.28	NOMATCH:	noData
80	462	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	21	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
81	446	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	11	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
81	446	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	11	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
81	446	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	11	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
81	446	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	11	p4	q2	ENSP00000303578	ENSP00000303578	HOXD12	q2	109	11	1398052	1398255	1	1	24.5%	73.5%	204	0.66 / 0.8 = 0.83	NOMATCH:ENSDARG00000046043(ENSDARP00000067695 [hoxc12b]);	3
81	446	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	11	p5	q3	ENSP00000249504	ENSP00000249504	HOXD11	q3	143	11	1406308	1406535	1	1	22.5%	89.5%	228	0.53 / 0.74 = 0.72	between_species_paralog:ENSDARG00000046042_(ENSDARP00000067694 [hoxc11b])	5
81	446	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	11	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	noMatch
81	446	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	11	p7	---	ENSP00000249499	ENSP00000249499	HOXD9	noMatch
81	446	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	11	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
81	446	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	11	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	q1
81	446	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	11	p10	---	ENSP00000302548	ENSP00000302548	HOXD4	q1
81	446	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	11	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
81	446	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	11	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
81	446	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	11	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
81	446	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	11	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
82	430	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9874	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
82	430	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9874	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
82	430	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9874	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
82	430	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9874	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
82	430	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9874	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
82	430	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9874	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	noMatch
82	430	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9874	p7	---	ENSP00000249499	ENSP00000249499	HOXD9	noMatch
82	430	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9874	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
82	430	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9874	p9	q1	ENSP00000315949	ENSP00000315949	HOXD8	q1	115	contig_9874	8132	8398	-1	1	32.1%	64.5%	267	0.49 / 0.78 = 0.63	NOMATCH:ENSGACG00000005623(ENSGACP00000007424);	3
82	430	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9874	p10	q2	ENSP00000302548	ENSP00000302548	HOXD4	q1	121	contig_9874	2487	2714	-1	1	29.8%	76.3%	228	0.51 / 0.78 = 0.65	NOMATCH:ENSGACG00000005626(ENSGACP00000007426);	9
82	430	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9874	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	q2
82	430	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9874	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
82	430	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9874	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
82	430	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9874	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
83	408	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_3110	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
83	408	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_3110	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
83	408	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_3110	p3	q1	ENSP00000249505	ENSP00000249505	HOXD13	q1	265	scaffold_3110	2177	3805	1	2	89%	47.8%	858	0.61 / 0.59 = 1.03	between_species_paralog:NEWSINFRUG00000160125_(NEWSINFRUP00000178913)	2
83	408	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_3110	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
83	408	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_3110	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
83	408	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_3110	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	noMatch
83	408	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_3110	p7	---	ENSP00000249499	ENSP00000249499	HOXD9	noMatch
83	408	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_3110	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
83	408	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_3110	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
83	408	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_3110	p10	---	ENSP00000302548	ENSP00000302548	HOXD4	noMatch
83	408	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_3110	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
83	408	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_3110	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
83	408	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_3110	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
83	408	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_3110	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
84	407	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2645	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
84	407	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2645	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
84	407	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2645	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
84	407	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2645	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
84	407	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2645	p5	q1	ENSP00000249504	ENSP00000249504	HOXD11	q1	226.5	contig_2645	7504	9697	-1	2	76.9%	48.9%	660	0.53 / 0.59 = 0.9	NOMATCH:ENSGACG00000009392(ENSGACP00000012382);	4
84	407	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2645	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	noMatch
84	407	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2645	p7	---	ENSP00000249499	ENSP00000249499	HOXD9	noMatch
84	407	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2645	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
84	407	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2645	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
84	407	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2645	p10	---	ENSP00000302548	ENSP00000302548	HOXD4	noMatch
84	407	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2645	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
84	407	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2645	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
84	407	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2645	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
84	407	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2645	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
85	406	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9877	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
85	406	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9877	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
85	406	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9877	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
85	406	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9877	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
85	406	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9877	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
85	406	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9877	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	q1
85	406	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9877	p7	q1	ENSP00000249499	ENSP00000249499	HOXD9	q1	146	contig_9877	17464	17697	-1	1	22.8%	85.9%	234	0.6 / 0.78 = 0.77	NOMATCH:	4
85	406	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9877	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
85	406	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9877	p9	q2	ENSP00000315949	ENSP00000315949	HOXD8	q2	106	contig_9877	4242	4511	-1	1	30%	60%	270	0.49 / 0.8 = 0.61	NOMATCH:	5
85	406	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9877	p10	---	ENSP00000302548	ENSP00000302548	HOXD4	q2
85	406	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9877	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
85	406	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9877	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
85	406	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9877	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
85	406	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_9877	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
86	402	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
86	402	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
86	402	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
86	402	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
86	402	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	q1
86	402	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p6	q1	ENSP00000249501	ENSP00000249501	HOXD10	q1	169	Un_random	27778788	27779063	-1	1	27.1%	87%	276	0.58 / 0.75 = 0.77	NOMATCH:ENSGALG00000022323(ENSGALP00000035127 [430550],ENSGALP00000035126 [430550]);	3
86	402	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p7	---	ENSP00000249499	ENSP00000249499	HOXD9	q1
86	402	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
86	402	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p9	q2	ENSP00000315949	ENSP00000315949	HOXD8	q2	114	Un_random	27806971	27807210	-1	1	27.6%	68.8%	240	0.49 / 0.79 = 0.62	NOMATCH:ENSGALG00000013215(ENSGALP00000004731,ENSGALP00000029206);	5
86	402	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p10	---	ENSP00000302548	ENSP00000302548	HOXD4	q2
86	402	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
86	402	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
86	402	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
86	402	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
87	400	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
87	400	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
87	400	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
87	400	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
87	400	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p5	q1	ENSP00000249504	ENSP00000249504	HOXD11	q1	222.7	Un_random	11038122	11040291	-1	2	99.1%	41.8%	849	0.53 / 0.59 = 0.9	between_species_paralog:ENSGALG00000014091_(ENSGALP00000022325)	1
87	400	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	noMatch
87	400	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p7	---	ENSP00000249499	ENSP00000249499	HOXD9	noMatch
87	400	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
87	400	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
87	400	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p10	---	ENSP00000302548	ENSP00000302548	HOXD4	noMatch
87	400	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
87	400	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
87	400	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
87	400	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
88	385	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
88	385	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
88	385	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p3	q1	ENSP00000249505	ENSP00000249505	HOXD13	q1	250	Un_random	4242278	4245456	1	2	60%	56.8%	618	0.61 / 0.61 = 1	between_species_paralog:ENSGALG00000010923_(ENSGALP00000017746)	1
88	385	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
88	385	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
88	385	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	noMatch
88	385	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p7	---	ENSP00000249499	ENSP00000249499	HOXD9	noMatch
88	385	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
88	385	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
88	385	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p10	---	ENSP00000302548	ENSP00000302548	HOXD4	noMatch
88	385	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
88	385	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
88	385	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
88	385	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
89	384	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	6	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
89	384	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	6	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
89	384	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	6	p3	q1	ENSP00000249505	ENSP00000249505	HOXD13	q1	249	6	37029844	37032258	-1	2	89.9%	44.6%	780	0.61 / 0.61 = 1	between_species_paralog:ENSDARG00000043871_(ENSDARP00000064412 [hoxc13b])	3
89	384	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	6	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
89	384	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	6	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
89	384	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	6	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	noMatch
89	384	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	6	p7	---	ENSP00000249499	ENSP00000249499	HOXD9	noMatch
89	384	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	6	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
89	384	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	6	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
89	384	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	6	p10	---	ENSP00000302548	ENSP00000302548	HOXD4	noMatch
89	384	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	6	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
89	384	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	6	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
89	384	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	6	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
89	384	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	6	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
90	309	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
90	309	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
90	309	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
90	309	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
90	309	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
90	309	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	noMatch
90	309	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p7	---	ENSP00000249499	ENSP00000249499	HOXD9	noMatch
90	309	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
90	309	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
90	309	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p10	q1	ENSP00000302548	ENSP00000302548	HOXD4	q1	170	Un_random	376735	377022	-1	1	37.6%	85.4%	288	0.51 / 0.69 = 0.74	between_species_paralog:ENSGALG00000022622_(ENSGALP00000029207)	3
90	309	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
90	309	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
90	309	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
90	309	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
91	304	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
91	304	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
91	304	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
91	304	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
91	304	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
91	304	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p6	q1	ENSP00000249501	ENSP00000249501	HOXD10	q1	125	Un_random	20045126	20045365	-1	1	23.5%	70%	240	0.58 / 0.81 = 0.72	NOMATCH:ENSGALG00000011640(ENSGALP00000018998 [HXD9_CHICK]);	6
91	304	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p7	q2	ENSP00000249499	ENSP00000249499	HOXD9	q1	108	Un_random	20047888	20048409	-1	1	53.2%	41.8%	522	0.6 / 0.84 = 0.71	ortholog_one2many:ENSGALG00000011640_(ENSGALP00000018998 [HXD9_CHICK])	7
91	304	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
91	304	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
91	304	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p10	---	ENSP00000302548	ENSP00000302548	HOXD4	noMatch
91	304	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
91	304	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
91	304	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
91	304	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
92	248	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	1099214175475	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
92	248	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	1099214175475	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
92	248	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	1099214175475	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
92	248	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	1099214175475	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
92	248	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	1099214175475	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
92	248	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	1099214175475	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	q1
92	248	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	1099214175475	p7	q1	ENSP00000249499	ENSP00000249499	HOXD9	q1	169	1099214175475	321	578	1	1	25.1%	94.2%	258	0.6 / 0.75 = 0.8	NOMATCH:	4
92	248	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	1099214175475	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
92	248	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	1099214175475	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
92	248	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	1099214175475	p10	---	ENSP00000302548	ENSP00000302548	HOXD4	noMatch
92	248	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	1099214175475	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
92	248	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	1099214175475	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
92	248	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	1099214175475	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
92	248	HOXD9_ENSG00000128709_5e5.protein.info	Macaca_mulatta	1099214175475	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
93	221	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_3809	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
93	221	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_3809	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
93	221	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_3809	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
93	221	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_3809	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
93	221	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_3809	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
93	221	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_3809	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	noMatch
93	221	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_3809	p7	---	ENSP00000249499	ENSP00000249499	HOXD9	noMatch
93	221	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_3809	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
93	221	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_3809	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	q1
93	221	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_3809	p10	q1	ENSP00000302548	ENSP00000302548	HOXD4	q1	122	scaffold_3809	5472	5702	1	1	30.2%	75.3%	231	0.51 / 0.77 = 0.66	NOMATCH:NEWSINFRUG00000159821(NEWSINFRUP00000178647);	7
93	221	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_3809	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
93	221	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_3809	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
93	221	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_3809	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
93	221	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_3809	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
94	211	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	24	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
94	211	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	24	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
94	211	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	24	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
94	211	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	24	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
94	211	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	24	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	q1
94	211	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	24	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	q1
94	211	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	24	p7	q1	ENSP00000249499	ENSP00000249499	HOXD9	q1	144	24	25218450	25218674	1	1	21.9%	86.7%	225	0.6 / 0.78 = 0.77	between_species_paralog:ENSDARG00000001753_(ENSDARP00000035919 [hoxb9a])	3
94	211	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	24	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
94	211	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	24	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
94	211	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	24	p10	---	ENSP00000302548	ENSP00000302548	HOXD4	noMatch
94	211	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	24	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
94	211	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	24	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
94	211	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	24	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
94	211	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	24	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
95	208	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_4108	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
95	208	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_4108	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
95	208	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_4108	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
95	208	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_4108	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
95	208	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_4108	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
95	208	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_4108	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	q1
95	208	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_4108	p7	q1	ENSP00000249499	ENSP00000249499	HOXD9	q1	142	scaffold_4108	5963	6187	1	1	21.9%	86.7%	225	0.6 / 0.79 = 0.76	NOMATCH:NEWSINFRUG00000159744(NEWSINFRUP00000181196);	4
95	208	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_4108	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
95	208	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_4108	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
95	208	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_4108	p10	---	ENSP00000302548	ENSP00000302548	HOXD4	noMatch
95	208	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_4108	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
95	208	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_4108	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
95	208	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_4108	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
95	208	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_4108	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
96	204	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2644	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
96	204	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2644	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
96	204	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2644	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
96	204	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2644	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
96	204	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2644	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	q1
96	204	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2644	p6	q1	ENSP00000249501	ENSP00000249501	HOXD10	q1	142	contig_2644	2418	2693	-1	1	27.1%	72.8%	276	0.58 / 0.79 = 0.73	NOMATCH:	5
96	204	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2644	p7	---	ENSP00000249499	ENSP00000249499	HOXD9	q1
96	204	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2644	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
96	204	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2644	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
96	204	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2644	p10	---	ENSP00000302548	ENSP00000302548	HOXD4	noMatch
96	204	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2644	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
96	204	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2644	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
96	204	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2644	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
96	204	HOXD9_ENSG00000128709_5e5.protein.info	Gasterosteus_aculeatus	contig_2644	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
97	201	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
97	201	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
97	201	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
97	201	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
97	201	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
97	201	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	noMatch
97	201	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p7	---	ENSP00000249499	ENSP00000249499	HOXD9	noMatch
97	201	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
97	201	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p9	q1	ENSP00000315949	ENSP00000315949	HOXD8	q1	110	Un_random	110113334	110113540	1	1	23.8%	79.7%	207	0.49 / 0.79 = 0.62	NOMATCH:GSTENG00008821001(GSTENP00008821001 [GSTENT00008821001]);	4
97	201	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p10	---	ENSP00000302548	ENSP00000302548	HOXD4	noMatch
97	201	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
97	201	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
97	201	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
97	201	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	Un_random	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
98	200	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	Un	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
98	200	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	Un	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
98	200	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	Un	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
98	200	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	Un	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
98	200	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	Un	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
98	200	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	Un	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	noMatch
98	200	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	Un	p7	---	ENSP00000249499	ENSP00000249499	HOXD9	noMatch
98	200	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	Un	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
98	200	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	Un	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	q1
98	200	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	Un	p10	q1	ENSP00000302548	ENSP00000302548	HOXD4	q1	110	Un	106219328	106219567	1	1	31.4%	63.8%	240	0.51 / 0.8 = 0.64	NOMATCH:ENSMODG00000021342(ENSMODP00000026672);	9
98	200	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	Un	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
98	200	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	Un	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
98	200	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	Un	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
98	200	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	Un	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
99	181	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
99	181	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
99	181	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
99	181	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
99	181	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
99	181	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	noMatch
99	181	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p7	---	ENSP00000249499	ENSP00000249499	HOXD9	noMatch
99	181	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
99	181	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
99	181	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p10	q1	ENSP00000302548	ENSP00000302548	HOXD4	q1	100	Un_random	13865410	13865601	1	1	25.1%	71.9%	192	0.51 / 0.81 = 0.63	NOMATCH:	noData
99	181	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
99	181	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
99	181	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
99	181	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	Un_random	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
100	181	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_95	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
100	181	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_95	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
100	181	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_95	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
100	181	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_95	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
100	181	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_95	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
100	181	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_95	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	noMatch
100	181	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_95	p7	---	ENSP00000249499	ENSP00000249499	HOXD9	noMatch
100	181	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_95	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
100	181	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_95	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
100	181	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_95	p10	q1	ENSP00000302548	ENSP00000302548	HOXD4	q1	100	scaffold_95	213384	213611	1	1	29.8%	63.2%	228	0.51 / 0.81 = 0.63	NOMATCH:NEWSINFRUG00000149044(NEWSINFRUP00000158438);	noData
100	181	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_95	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
100	181	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_95	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
100	181	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_95	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
100	181	HOXD9_ENSG00000128709_5e5.protein.info	Takifugu_rubripes	scaffold_95	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
101	117	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	12	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
101	117	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	12	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
101	117	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	12	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
101	117	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	12	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
101	117	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	12	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
101	117	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	12	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	noMatch
101	117	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	12	p7	---	ENSP00000249499	ENSP00000249499	HOXD9	noMatch
101	117	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	12	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
101	117	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	12	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
101	117	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	12	p10	---	ENSP00000302548	ENSP00000302548	HOXD4	noMatch
101	117	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	12	p11	q1	ENSP00000249440	ENSP00000249440	HOXD3	q1	108	12	17151894	17152307	1	1	31.3%	47.5%	414	0.56 / 0.88 = 0.64	NOMATCH:ENSBTAG00000010690(ENSBTAP00000014141);	5
101	117	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	12	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
101	117	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	12	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
101	117	HOXD9_ENSG00000128709_5e5.protein.info	Bos_taurus	12	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
102	114	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	4	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
102	114	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	4	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
102	114	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	4	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
102	114	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	4	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
102	114	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	4	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
102	114	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	4	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	noMatch
102	114	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	4	p7	---	ENSP00000249499	ENSP00000249499	HOXD9	noMatch
102	114	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	4	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
102	114	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	4	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
102	114	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	4	p10	---	ENSP00000302548	ENSP00000302548	HOXD4	noMatch
102	114	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	4	p11	q1	ENSP00000249440	ENSP00000249440	HOXD3	q1	105	4	288439997	288440407	1	1	30.8%	46.4%	411	0.56 / 0.88 = 0.64	NOMATCH:ENSMODG00000009015(ENSMODP00000011240);	6
102	114	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	4	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
102	114	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	4	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
102	114	HOXD9_ENSG00000128709_5e5.protein.info	Monodelphis_domestica	4	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
103	113	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	1	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
103	113	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	1	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
103	113	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	1	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
103	113	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	1	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
103	113	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	1	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
103	113	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	1	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	noMatch
103	113	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	1	p7	---	ENSP00000249499	ENSP00000249499	HOXD9	noMatch
103	113	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	1	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
103	113	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	1	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
103	113	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	1	p10	---	ENSP00000302548	ENSP00000302548	HOXD4	noMatch
103	113	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	1	p11	q1	ENSP00000249440	ENSP00000249440	HOXD3	q1	104	1	180367578	180368063	-1	1	37%	43.3%	486	0.56 / 0.88 = 0.64	NOMATCH:ENSGALG00000022726(ENSGALP00000035668);	6
103	113	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	1	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
103	113	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	1	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
103	113	HOXD9_ENSG00000128709_5e5.protein.info	Gallus_gallus	1	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
104	112	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	25	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
104	112	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	25	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
104	112	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	25	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
104	112	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	25	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
104	112	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	25	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
104	112	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	25	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	noMatch
104	112	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	25	p7	---	ENSP00000249499	ENSP00000249499	HOXD9	noMatch
104	112	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	25	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
104	112	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	25	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
104	112	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	25	p10	---	ENSP00000302548	ENSP00000302548	HOXD4	noMatch
104	112	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	25	p11	q1	ENSP00000249440	ENSP00000249440	HOXD3	q1	103	25	14730016	14730396	-1	1	26.6%	48%	381	0.56 / 0.88 = 0.64	NOMATCH:ENSCAFG00000006746(ENSCAFP00000010069 [493994]);	5
104	112	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	25	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
104	112	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	25	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
104	112	HOXD9_ENSG00000128709_5e5.protein.info	Canis_familiaris	25	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
105	110	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	5	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
105	110	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	5	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
105	110	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	5	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
105	110	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	5	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
105	110	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	5	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
105	110	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	5	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	noMatch
105	110	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	5	p7	---	ENSP00000249499	ENSP00000249499	HOXD9	noMatch
105	110	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	5	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
105	110	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	5	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
105	110	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	5	p10	---	ENSP00000302548	ENSP00000302548	HOXD4	noMatch
105	110	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	5	p11	q1	ENSP00000249440	ENSP00000249440	HOXD3	q1	101	5	147584758	147585171	1	1	31.3%	44.3%	414	0.56 / 0.88 = 0.64	NOMATCH:ENSMUSG00000029644(ENSMUSP00000082729 [Ipf1]);	6
105	110	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	5	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
105	110	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	5	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
105	110	HOXD9_ENSG00000128709_5e5.protein.info	Mus_musculus	5	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
106	109	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	6	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
106	109	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	6	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
106	109	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	6	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
106	109	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	6	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
106	109	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	6	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
106	109	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	6	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	noMatch
106	109	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	6	p7	---	ENSP00000249499	ENSP00000249499	HOXD9	noMatch
106	109	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	6	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
106	109	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	6	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
106	109	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	6	p10	---	ENSP00000302548	ENSP00000302548	HOXD4	noMatch
106	109	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	6	p11	q1	ENSP00000249440	ENSP00000249440	HOXD3	q1	100	6	2710849	2711220	-1	1	26.4%	48.4%	372	0.56 / 0.89 = 0.63	NOMATCH:GSTENG00023870001(GSTENP00023870001 [GSTENT00023870001]);	10
106	109	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	6	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
106	109	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	6	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
106	109	HOXD9_ENSG00000128709_5e5.protein.info	Tetraodon_nigroviridis	6	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#