Overview on processed synteny regions for HOXC9_ENSG00000180806_3e5.protein.info
Rank | AlnOverview | AlnScore | RatioSum | logRatioSum | focalRatioSum | TargetGenome | chr | startPos | endPos | hitsCount | queryCov | meanIdentity | ori | score | compara |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | 13892 | 751.1 | 50 | 225.79 | Homo_sapiens | 12 | 52680240 | 52682722 | 2 | 100% | 96% | 1 | 556 | within_species_paralog: HOXC9 | |
2 | 13295 | 419.02 | 36.52 | 165.31 | Mus_musculus | 15 | 102809687 | 102812170 | 2 | 100% | 99.2% | 1 | 553 | ortholog_one2one: Hoxc9 | |
3 | 12914 | 331.23 | 33.3 | 119.67 | Macaca_mulatta | 11 | 51098616 | 51101089 | 2 | 100% | 95.6% | 1 | 555 | ortholog_one2one: HOXC9 | |
4 | 12209 | 257.8 | 30.56 | 66.01 | Canis_familiaris | 27 | |||||||||
5 | 11686 | 362.79 | 31.94 | 126.19 | Bos_taurus | 5 | 16811866 | 16814511 | 2 | 100% | 99.2% | -1 | 553 | ortholog_one2one: HOXC9 | |
6 | 7720 | 23.67 | 2.83 | 8.26 | Oryzias_latipes | 7 | 12875582 | 12877182 | 2 | 99.2% | 73.1% | 1 | 409 | ortholog_one2one: HXC9_ORYLA | |
7 | 7467 | 26.33 | 3.06 | 9.1 | Takifugu_rubripes | scaffold_66 | 154982 | 156667 | 2 | 99.6% | 69.4% | -1 | 399 | ortholog_one2one: HXC9_FUGRU | |
8 | 7243 | 20.34 | 0.98 | 7.47 | Gasterosteus_aculeatus | groupXII | 11616265 | 11618047 | 2 | 99.6% | 73.9% | 1 | 409 | ortholog_one2one: ENSGACG00000009396 | |
9 | 7224 | 22.58 | 1.67 | 8.05 | Tetraodon_nigroviridis | 9 | 4222544 | 4224265 | 2 | 99.6% | 68.1% | 1 | 390 | ortholog_one2many: HOXC9
; GSTENG00028039001 |
|
10 | 7062 | 39.3 | 10.24 | 14.42 | Xenopus_tropicalis | scaffold_226 | 388156 | 390498 | 2 | 100% | 83.6% | 1 | 464 | noComparaHits: hoxc9 | |
11 | 7050 | 24.94 | 4.13 | 9.36 | Danio_rerio | 23 | 35676857 | 35678692 | 2 | 99.6% | 72.3% | 1 | 403 | ortholog_one2one: hoxc9a | |
12 | 4651 | 9.15 | -4.41 | 3.2 | Xenopus_tropicalis | scaffold_56 | 1415310 | 1416635 | 2 | 99.2% | 52.3% | 1 | 266 | noComparaHits: ENSXETG00000000724 | |
13 | 4551 | 8.91 | -4.63 | 3.1 | Homo_sapiens | 7 | 27169750 | 27171601 | 2 | 99.2% | 49.8% | -1 | 244.3 | within_species_paralog: HOXA9 | |
14 | 4446 | 8.94 | -4.9 | 3.12 | Mus_musculus | 6 | 52153830 | 52155687 | 2 | 99.2% | 50.4% | -1 | 248 | between_species_paralog: Hoxa9 | |
15 | 4423 | 8.82 | -4.75 | 3.06 | Canis_familiaris | 14 | 43293507 | 43295428 | 2 | 99.2% | 47.7% | -1 | 248.4 | between_species_paralog: 482372 | |
16 | 4189 | 8.72 | -4.86 | 3.14 | Gallus_gallus | 2 | 32579719 | 32581455 | 2 | 99.2% | 51.1% | -1 | 248 | between_species_paralog: HXA9_CHICK | |
17 | 4155 | 7.65 | -3.63 | 2.96 | Homo_sapiens | 2 | 176695773 | 176697140 | 2 | 76.2% | 59.3% | 1 | 264 | within_species_paralog: HOXD9 | |
18 | 4080 | 7.97 | -4.58 | 2.9 | Macaca_mulatta | 3 | 99059984 | 99061847 | 2 | 99.2% | 50.2% | 1 | 247 | between_species_paralog: HOXA9 | |
19 | 3996 | 8.23 | -5.48 | 2.75 | Monodelphis_domestica | 8 | 293276346 | 293276801 | 1 | 56.2% | 46.8% | 1 | 119 | between_species_paralog: HOXA9 | |
20 | 3966 | 7.57 | -4 | 2.91 | Mus_musculus | 2 | 74498895 | 74500251 | 2 | 76.2% | 58.3% | 1 | 257 | between_species_paralog: Hoxd9 | |
21 | 3765 | 6.78 | -3.3 | 2.79 | Xenopus_tropicalis | scaffold_163 | 619622 | 620793 | 2 | 96.9% | 58.8% | -1 | 286 | ortholog_one2many: HOXD9 | |
22 | 3569 | 7.85 | -0.16 | 2.63 | Canis_familiaris | 9 | 28212650 | 28216111 | 2 | 95% | 52% | -1 | 239.8 | ortholog_one2many: 608958 | |
23 | 3547 | 7.57 | -0.49 | 2.89 | Danio_rerio | 3 | 23019703 | 23022949 | 2 | 67.7% | 66.8% | -1 | 244 | between_species_paralog: hoxb9a | |
24 | 3540 | 6.82 | -4.61 | 2.52 | Canis_familiaris | 36 | 22958879 | 22959109 | 1 | 29.6% | 93.5% | 1 | 154 | noComparaHits: ENSCAFG00000023404 | |
25 | 3529 | 7.74 | -0.26 | 2.62 | Homo_sapiens | 17 | 44055273 | 44058630 | 2 | 94.6% | 52.2% | -1 | 239.6 | within_species_paralog: HOXB9 | |
26 | 3405 | 6.31 | -4.04 | 1.81 | Macaca_mulatta | 12 | |||||||||
27 | 3319 | 9.94 | 2.91 | 4.95 | Gasterosteus_aculeatus | contig_2643 | 45173 | 46955 | 2 | 99.6% | 73.9% | -1 | 409 | noComparaHits: ENSGACG00000009396 | |
28 | 3289 | 7.32 | -0.75 | 2.52 | Mus_musculus | 11 | 96087632 | 96090937 | 2 | 66.2% | 65% | 1 | 233.8 | between_species_paralog: Hoxb9 | |
29 | 3258 | 6.77 | -0.26 | 2.87 | Monodelphis_domestica | 4 | 187464529 | 187465943 | 2 | 76.2% | 60.8% | 1 | 270 | ortholog_one2many: HOXD9 | |
30 | 3177 | 7.81 | -1.34 | 2.66 | Gasterosteus_aculeatus | groupX | 9901359 | 9902621 | 2 | 67.3% | 59.4% | -1 | 212 | between_species_paralog: ENSGACG00000007123 | |
31 | 3166 | 7.11 | -1.06 | 2.49 | Macaca_mulatta | 16 | 32852664 | 32856017 | 2 | 94.6% | 52.2% | -1 | 238.8 | between_species_paralog: HOXB9 | |
32 | 3163 | 5.88 | -3.67 | 2.5 | Danio_rerio | 9 | 1580192 | 1581290 | 2 | 99.2% | 53% | -1 | 280 | between_species_paralog: hoxd9a | |
33 | 3124 | 6.37 | -5.19 | 2.3 | Gallus_gallus | 7 | 17409077 | 17409745 | 1 | 69.2% | 38.5% | -1 | 126 | noComparaHits: NP_997060.1 | |
34 | 3113 | 5.88 | -3.65 | 2.29 | Gasterosteus_aculeatus | contig_5303 | 254144 | 255336 | 2 | 86.5% | 53.4% | 1 | 236 | noComparaHits: Q4VQD4_GASAC | |
35 | 3113 | 5.88 | -3.65 | 2.29 | Gasterosteus_aculeatus | groupXVI | 9814144 | 9815336 | 2 | 86.5% | 53.4% | -1 | 236 | between_species_paralog: Q4VQD4_GASAC | |
36 | 3054 | 6.66 | -0.36 | 2.31 | Xenopus_tropicalis | scaffold_334 | 584781 | 589462 | 2 | 90.8% | 48% | -1 | 209.2 | between_species_paralog: HOXB9 | |
37 | 3015 | 5.84 | -3.7 | 2.36 | Oryzias_latipes | 21 | 24614922 | 24616108 | 2 | 99.6% | 55.4% | 1 | 273 | between_species_paralog: HXD9_ORYLA | |
38 | 3004 | 5.92 | -4 | 2.37 | Takifugu_rubripes | scaffold_100 | 358383 | 359535 | 2 | 99.2% | 54% | -1 | 267 | between_species_paralog: NEWSINFRUG00000124776 | |
39 | 2979 | 8.15 | -1.02 | 2.66 | Oryzias_latipes | 11 | 10539576 | 10540702 | 2 | 99.6% | 48.4% | -1 | 239.8 | noComparaHits: Q9PTV6_ORYLA | |
40 | 2951 | 7.12 | -0.98 | 2.47 | Takifugu_rubripes | scaffold_12 | 2360018 | 2361166 | 2 | 99.2% | 49.3% | -1 | 242.4 | between_species_paralog: HXA9_FUGRU | |
41 | 2919 | 7.13 | -1.01 | 2.5 | Tetraodon_nigroviridis | 21 | 3012226 | 3013375 | 2 | 99.2% | 47% | 1 | 245 | between_species_paralog: HOXA9
; GSTENG00017478001 |
|
42 | 2844 | 5.84 | -0.15 | 2.58 | Bos_taurus | 2 | 16998550 | 16999927 | 2 | 76.5% | 57.3% | -1 | 257 | between_species_paralog: HOXD9 | |
43 | 2825 | 5.73 | -4.2 | 2.24 | Tetraodon_nigroviridis | 2 | 11097817 | 11098947 | 2 | 76.5% | 57% | -1 | 234.3 | between_species_paralog: GSTENG00031462001 | |
44 | 2816 | 6.74 | -1.58 | 2.23 | Monodelphis_domestica | 2 | 201204831 | 201208661 | 2 | 71.2% | 61.6% | -1 | 233.8 | between_species_paralog: HOXB9 | |
45 | 2699 | 6.46 | -1.87 | 2.04 | Takifugu_rubripes | scaffold_41 | 540952 | 541188 | 1 | 30% | 84.8% | 1 | 141 | noComparaHits: NEWSINFRUG00000160069 | |
46 | 2686 | 7.27 | -0.8 | 2.08 | Danio_rerio | 19 | 13916949 | 13917991 | 2 | 72.7% | 54.1% | 1 | 198.5 | between_species_paralog: hoxa9a | |
47 | 2582 | 6.41 | -1.96 | 2.01 | Gasterosteus_aculeatus | groupXI | 1626140 | 1626433 | 1 | 37.7% | 72.4% | 1 | 151 | noComparaHits: | |
48 | 2552 | 6.29 | -2.05 | 2 | Oryzias_latipes | 8 | 24318541 | 24318765 | 1 | 28.8% | 85.3% | 1 | 140 | between_species_paralog: Q3V615_ORYLA | |
49 | 2190 | 5.24 | -2.42 | 0.76 | Xenopus_tropicalis | scaffold_161 | |||||||||
50 | 2184 | 5.4 | -2.02 | 1.72 | Tetraodon_nigroviridis | Un_random | 38140064 | 38140297 | 1 | 30% | 83.3% | -1 | 140 | noComparaHits: GSTENG00020456001 | |
51 | 2098 | 4.85 | -0.17 | 2.3 | Danio_rerio | 2 | 12067416 | 12068514 | 2 | 99.2% | 53% | -1 | 280 | between_species_paralog: hoxd9a | |
52 | 1914 | 5.53 | 1.83 | 1.4 | Danio_rerio | 11 | |||||||||
53 | 1728 | 3.64 | -0.38 | 1.81 | Gallus_gallus | 27 | 3563906 | 3568210 | 2 | 88.5% | 52.1% | 1 | 241.3 | between_species_paralog: HOXB9 | |
54 | 1631 | 4.55 | -1.78 | 1.64 | Bos_taurus | 19 | 31239444 | 31239746 | 1 | 42.7% | 69.4% | -1 | 149 | between_species_paralog: HOXB9 | |
55 | 1564 | 4.14 | -0.99 | 0.85 | Oryzias_latipes | 19 | |||||||||
56 | 1533 | 3.68 | -0.34 | 1.79 | Danio_rerio | 16 | 21188212 | 21189729 | 2 | 97.7% | 46.8% | 1 | 205.5 | between_species_paralog: hoxa9b | |
57 | 1423 | 4.62 | 1.1 | 0.95 | Gasterosteus_aculeatus | contig_2646 | |||||||||
58 | 1399 | 4.48 | -0.59 | 1.99 | Bos_taurus | 4 | 40177480 | 40179376 | 2 | 99.2% | 47.8% | 1 | 247.6 | between_species_paralog: HOXA9 | |
59 | 1389 | 3.53 | -0.5 | 0.73 | Takifugu_rubripes | scaffold_130 | |||||||||
60 | 1371 | 3.51 | -0.56 | 1.63 | Oryzias_latipes | 16 | 13131568 | 13131795 | 1 | 29.2% | 80.3% | 1 | 134 | between_species_paralog: Q3V626_ORYLA | |
61 | 1358 | 3.05 | -1.1 | 0.99 | Danio_rerio | 12 | |||||||||
62 | 1344 | 3.09 | -1.2 | 0.93 | Bos_taurus | 4 | |||||||||
63 | 1312 | 3.47 | -0.62 | 1.6 | Gasterosteus_aculeatus | groupXX | 9727578 | 9727799 | 1 | 28.5% | 81.1% | 1 | 131 | between_species_paralog: ENSGACG00000008310 | |
64 | 1312 | 3.47 | -0.62 | 1.6 | Gasterosteus_aculeatus | contig_1095 | 43338 | 43559 | 1 | 28.5% | 81.1% | 1 | 131 | noComparaHits: ENSGACG00000008310 | |
65 | 1305 | 1.78 | -4.18 | 0.22 | Gasterosteus_aculeatus | contig_2642 | |||||||||
66 | 1296 | 3.41 | -0.67 | 1.6 | Takifugu_rubripes | scaffold_48 | 1063108 | 1063341 | 1 | 30% | 80.8% | -1 | 137 | between_species_paralog: NEWSINFRUG00000138062 | |
67 | 1258 | 3.22 | -0.88 | 1.35 | Gasterosteus_aculeatus | contig_2344 | 65911 | 66165 | 1 | 32.7% | 80% | -1 | 145 | noComparaHits: | |
68 | 1238 | 3.29 | -0.8 | 1.6 | Tetraodon_nigroviridis | 8 | 6620995 | 6621216 | 1 | 28.5% | 83.8% | 1 | 135 | between_species_paralog: HOXAb9 | |
69 | 1188 | 2.89 | -0.11 | 0.97 | Gasterosteus_aculeatus | contig_2345 | |||||||||
70 | 1004 | 2.59 | -0.44 | 0.42 | Gasterosteus_aculeatus | groupV | |||||||||
71 | 991 | 3.01 | -1.23 | 0.63 | Tetraodon_nigroviridis | 2 | |||||||||
72 | 977 | 28 | 3.33 | 9.33 | Monodelphis_domestica | Un | |||||||||
73 | 943 | 1.79 | -0.23 | 0.76 | Danio_rerio | 3 | |||||||||
74 | 829 | 3.06 | 1.12 | 3.06 | Gallus_gallus | Un_random | 20045123 | 20048409 | 2 | 99.6% | 83.5% | -1 | 461 | ortholog_one2one: HXD9_CHICK | |
75 | 740 | 2.24 | 0.81 | 0.75 | Gallus_gallus | Un_random | |||||||||
76 | 696 | 2.7 | -0.33 | 0.54 | Takifugu_rubripes | scaffold_346 | |||||||||
77 | 655 | 1.65 | 0.5 | 0.55 | Gasterosteus_aculeatus | contig_2645 | |||||||||
78 | 618 | 1.5 | 0.41 | 0.3 | Danio_rerio | 6 | |||||||||
79 | 595 | 1.49 | -0.59 | 0.84 | Oryzias_latipes | 15 | 4374398 | 4374607 | 1 | 26.9% | 87.1% | -1 | 132 | noComparaHits: Q9PVR1_ORYLA | |
80 | 591 | 1.49 | -0.59 | 0.84 | Gasterosteus_aculeatus | groupVI | 16162361 | 16162570 | 1 | 26.9% | 87.1% | 1 | 132 | noComparaHits: ENSGACG00000011902 | |
81 | 579 | 1.36 | 0.31 | 0.27 | Gallus_gallus | Un_random | |||||||||
82 | 571 | 1.46 | -0.62 | 0.84 | Takifugu_rubripes | scaffold_39 | 584702 | 584911 | 1 | 26.9% | 85.7% | 1 | 130 | noComparaHits: Q4VN43_FUGRU | |
83 | 567 | 0.02 | -3.9 | 0 | Danio_rerio | 14 | |||||||||
84 | 556 | 0.02 | -3.9 | 0 | Oryzias_latipes | 10 | |||||||||
85 | 543 | 1.44 | -0.65 | 0.82 | Tetraodon_nigroviridis | 17 | 9576378 | 9576557 | 1 | 23.1% | 85% | 1 | 112 | noComparaHits: GSTENG00018723001
; HOXDb9 |
|
86 | 531 | 1.55 | -0.5 | 0.45 | Gasterosteus_aculeatus | contig_9874 | |||||||||
87 | 520 | 1.52 | -0.55 | 1.1 | Tetraodon_nigroviridis | 3 | 679905 | 680132 | 1 | 29.2% | 73.7% | -1 | 127 | noComparaHits: GSTENG00031864001 | |
88 | 519 | 1.48 | -0.59 | 0.97 | Gasterosteus_aculeatus | contig_9877 | 17464 | 17757 | 1 | 37.7% | 72.4% | -1 | 151 | noComparaHits: | |
89 | 507 | 0.02 | -3.9 | 0 | Tetraodon_nigroviridis | 1 | |||||||||
90 | 498 | 0.02 | -3.9 | 0 | Takifugu_rubripes | scaffold_5 | |||||||||
91 | 468 | 1.27 | -0.98 | 0.64 | Gallus_gallus | Un_random | |||||||||
92 | 446 | 0.02 | -3.9 | 0 | Mus_musculus | 6 | |||||||||
93 | 438 | 0.93 | -0.06 | 0.93 | Danio_rerio | 24 | 25215421 | 25218674 | 2 | 67.7% | 66.8% | 1 | 244 | between_species_paralog: hoxb9a | |
94 | 417 | 0.98 | -0.01 | 0.2 | Takifugu_rubripes | scaffold_3110 | |||||||||
95 | 375 | 0.9 | -0.1 | 0.3 | Takifugu_rubripes | scaffold_3809 | |||||||||
96 | 295 | 0.73 | -0.3 | 0.15 | Gallus_gallus | Un_random | |||||||||
97 | 276 | 0.72 | -0.32 | 0.72 | Macaca_mulatta | 1099214175475 | 342 | 572 | 1 | 29.6% | 93.5% | 1 | 154 | noComparaHits: | |
98 | 269 | 0.78 | -0.24 | 0.2 | Gasterosteus_aculeatus | contig_6417 | |||||||||
99 | 263 | 0.01 | -4.6 | 0 | Homo_sapiens | 13 | |||||||||
100 | 253 | 0.7 | -0.35 | 0.7 | Takifugu_rubripes | scaffold_4108 | 5951 | 6187 | 1 | 30% | 84.8% | 1 | 141 | noComparaHits: NEWSINFRUG00000159744 | |
101 | 243 | 0.01 | -4.6 | 0 | Macaca_mulatta | 17 | |||||||||
102 | 237 | 0.68 | -0.38 | 0.68 | Gasterosteus_aculeatus | contig_4905 | 15877 | 16086 | 1 | 26.9% | 87.1% | -1 | 132 | noComparaHits: ENSGACG00000011902 | |
103 | 226 | 0.44 | -0.81 | 0.22 | Tetraodon_nigroviridis | Un_random | |||||||||
104 | 221 | 0.68 | -0.38 | 0.68 | Gasterosteus_aculeatus | contig_2644 | 2436 | 2690 | 1 | 32.7% | 64.7% | -1 | 123 | noComparaHits: | |
105 | 209 | 0.01 | -4.6 | 0 | Danio_rerio | 14 | |||||||||
106 | 207 | 0.71 | -0.33 | 0.24 | Gallus_gallus | Un_random | |||||||||
107 | 195 | 0.01 | -4.6 | 0 | Mus_musculus | 2 | |||||||||
108 | 180 | 0.63 | -0.45 | 0.13 | Tetraodon_nigroviridis | 6 | |||||||||
109 | 176 | 0.62 | -0.47 | 0.12 | Takifugu_rubripes | scaffold_95 |
Data table for reference protein loci
QueryProtein(s)=ENSP00000302836 (contained in p6)QueryGenome=Homo_sapiens
ref-loci | geneName | protID | transID | geneID | protName | chr | startPos | endPos | meanPos | ori | numExons | protLength | selfscore |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | CALCOCO1 | ENSP00000262059 | ENST00000262059 | ENSG00000012822 | NP_065949.1 | 12 | 52391995 | 52405293 | 52396060 | -1 | 14 | 691 | 1428 |
p2 | HOXC13 | ENSP00000243056 | ENST00000243056 | ENSG00000123364 | HXC13_HUMAN | 12 | 52618958 | 52625307 | 52619450 | 1 | 2 | 330 | 645 |
p3 | HOXC12 | ENSP00000243103 | ENST00000243103 | ENSG00000123407 | HXC12_HUMAN | 12 | 52634981 | 52636617 | 52635401 | 1 | 2 | 282 | 406 |
p4 | HOXC11 | ENSP00000243082 | ENST00000243082 | ENSG00000123388 | HXC11_HUMAN | 12 | 52653293 | 52655464 | 52653746 | 1 | 2 | 304 | 632 |
p5 | HOXC10 | ENSP00000307321 | ENST00000303460 | ENSG00000180818 | HXC10_HUMAN | 12 | 52665311 | 52669497 | 52665821 | 1 | 2 | 342 | 708 |
p6 | HOXC9 | ENSP00000302836 | ENST00000303450 | ENSG00000180806 | HXC9_HUMAN | 12 | 52680240 | 52682725 | 52680627 | 1 | 2 | 260 | 556 |
p7 | HOXC8 | ENSP00000040584 | ENST00000040584 | ENSG00000037965 | HXC8_HUMAN | 12 | 52689336 | 52691432 | 52689696 | 1 | 2 | 242 | 469 |
p8 | HOXC6 | ENSP00000243108 | ENST00000243108 | ENSG00000197757 | HXC6_HUMAN | 12 | 52708573 | 52710013 | 52708921 | 1 | 2 | 235 | 491 |
p9 | HOXC5 | ENSP00000309336 | ENST00000312492 | ENSG00000172789 | HXC5_HUMAN | 12 | 52713174 | 52714543 | 52713504 | 1 | 2 | 222 | 467 |
p10 | HOXC4 | ENSP00000305973 | ENST00000303406 | ENSG00000198353 | HXC4_HUMAN | 12 | 52733974 | 52735256 | 52734367 | 1 | 2 | 264 | 566 |
p11 | SMUG1 | ENSP00000338606 | ENST00000337581 | ENSG00000123415 | SMUG1_HUMAN | 12 | 52862147 | 52863991 | 52862549 | -1 | 2 | 270 | 568 |
p12 | CBX5 | ENSP00000209875 | ENST00000209875 | ENSG00000094916 | CBX5_HUMAN | 12 | 52921806 | 52937701 | 52932122 | -1 | 4 | 191 | 401.7 |
p13 | HNRPA1 | ENSP00000341826 | ENST00000340913 | ENSG00000135486 | ROA1_HUMAN | 12 | 52960859 | 52964364 | 52962510 | 1 | 10 | 372 | 562 |
p14 | NFE2 | ENSP00000312436 | ENST00000312156 | ENSG00000123405 | NFE2_HUMAN | 12 | 52972425 | 52975299 | 52972980 | -1 | 2 | 373 | 762.7 |
Parameter used for the loci-alignments
qLoci-Score_CutOff: 100 bitsqLoci-MaxProtOverlap: 40 aa
loci size factor: 2 (additional loci size constraint: 0 nt)
loci-grouping type: loci intervalls
max distance between non-highlighted (orange) target columns: 500000 nt
RelativeScore color index:
<= 33 | <= 66 | <= 100 | <= 133 | <= 166 | <= 200 | <= 233 | <= 266 | <= 300 | <= 333 | <= 366 | <= 400 | <= 433 | <= 466 | <= 500 | <= 533 | <= 566 | <= 600 | <= 633 | <= 666 | <= 700 | <= 733 | <= 766 | <= 800 | <= 833 | <= 866 | <= 900 | <= 933 | <= 966 | <= 1000 | relSc>1000 |
<= 33 | <= 66 | <= 100 | <= 133 | <= 166 | <= 200 | <= 233 | <= 266 | <= 300 | <= 333 | <= 366 | <= 400 | <= 433 | <= 466 | <= 500 | <= 533 | <= 566 | <= 600 | <= 633 | <= 666 | <= 700 | <= 733 | <= 766 | <= 800 | <= 833 | <= 866 | <= 900 | <= 933 | <= 966 | <= 1000 | relSc>1000 |
region 1 (region 1 for Hsap)
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 12 -i 52391998:52975299 -f 44e4 some_geneID_to_be_selected
scoreRatio_sum=751.1 log_scoreRatio_sum=50 focal_scoreRatio_sum=225.79
AlnScore=13892 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Homo_sapiens
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000262059 | CALCOCO1 | q1 | q1 | 1428 | 12 | 52391998 | 52405293 | -1 | 14 | 100% | 92.4% | 2289 | 0.94 / 0.01 = 94 | within_species_paralog: CALCOCO1 | 1 |
p2 | q2 | +/+ | ENSP00000243056 | HOXC13 | q2 | q2 | 645 | 12 | 52618958 | 52625304 | 1 | 2 | 100% | 90.5% | 1038 | 0.57 / 0.01 = 57 | within_species_paralog: HOXC13 | 1 |
p3 | q3 | +/+ | ENSP00000243103 | HOXC12 | q3 | q3 | 406 | 12 | 52634981 | 52635592 | 1 | 1 | 72.3% | 93.6% | 612 | 0.51 / 0.01 = 51 | noComparaHits: HOXC12 | 1 |
p4 | q4 | +/+ | ENSP00000243082 | HOXC11 | q4 | q4 | 632 | 12 | 52653293 | 52655461 | 1 | 2 | 99.3% | 99.7% | 906 | 0.56 / 0.01 = 56 | within_species_paralog: HOXC11 | 1 |
p5 | q5 | +/+ | ENSP00000307321 | HOXC10 | q5 | q5 | 708 | 12 | 52665311 | 52669494 | 1 | 2 | 100% | 100% | 1026 | 0.59 / 0.01 = 59 | noComparaHits: HOXC10 | 1 |
p6 | q6 | +/+ | ENSP00000302836 | HOXC9 | q6 | q6 | 556 | 12 | 52680240 | 52682722 | 1 | 2 | 100% | 96% | 825 | 0.52 / 0.01 = 52 | within_species_paralog: HOXC9 | 1 |
p7 | q7 | +/+ | ENSP00000040584 | HOXC8 | q7 | q7 | 469 | 12 | 52689336 | 52691360 | 1 | 2 | 90.5% | 91.1% | 687 | 0.34 / 0.01 = 34 | within_species_paralog: HOXC8 | 1 |
p8 | q8 | +/+ | ENSP00000243108 | HOXC6 | q8 | q8 | 491 | 12 | 52708573 | 52710010 | 1 | 2 | 100% | 97.9% | 726 | 0.56 / 0.01 = 56 | within_species_paralog: HOXC6 | 1 |
p9 | q9 | +/+ | ENSP00000309336 | HOXC5 | q9 | q9 | 467 | 12 | 52713174 | 52714540 | 1 | 2 | 100% | 100% | 666 | 0.57 / 0.01 = 57 | within_species_paralog: HOXC5 | 1 |
p10 | q10 | +/+ | ENSP00000305973 | HOXC4 | q10 | q10 | 566 | 12 | 52733974 | 52735253 | 1 | 2 | 100% | 100% | 792 | 0.51 / 0.01 = 51 | within_species_paralog: HOXC4 | 1 |
p11 | q11 | +/+ | ENSP00000338606 | SMUG1 | q11 | q11 | 568 | 12 | 52862150 | 52863991 | -1 | 2 | 100% | 95.5% | 873 | 0.73 / 0.01 = 73 | noComparaHits: SMUG1 | 1 |
p12 | q12 | +/+ | ENSP00000209875 | CBX5 | q12 | q12 | 401.7 | 12 | 52921809 | 52937701 | -1 | 4 | 100% | 95.5% | 600 | 0.37 / 0.01 = 37 | within_species_paralog: CBX5 | 1 |
p13 | q13 | +/+ | ENSP00000341826 | HNRPA1 | q13 | q13 | 501.7 | 12 | 52961437 | 52964020 | 1 | 4 | 65.3% | 88.1% | 831 | 0.01 / 0.1 = 0.1 | within_species_paralog: HNRPA1 | noData |
p14 | q14 | +/+ | ENSP00000312436 | NFE2 | q14 | q14 | 762.7 | 12 | 52972428 | 52975299 | -1 | 2 | 100% | 96.7% | 1173 | 0.74 / 0.01 = 74 | noComparaHits: NFE2 | 1 |
region 2 (region 1 for Mmus)
retrieve target region: getEnsemblProteins.pl -h Mus_musculus -l 15 -i 102535406:103079076 -f 41e4 some_geneID_to_be_selected
scoreRatio_sum=419.02 log_scoreRatio_sum=36.52 focal_scoreRatio_sum=165.31
AlnScore=13295 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Mus_musculus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000262059 | CALCOCO1 | q1 | q1 | 1162.7 | 15 | 102535406 | 102547731 | -1 | 12 | 95.5% | 78.9% | 2244 | 0.94 / 0.18 = 5.22 | ortholog_one2one: Calcoco1 | 1 |
p2 | q2 | +/+ | ENSP00000243056 | HOXC13 | q2 | q2 | 635 | 15 | 102749222 | 102755456 | 1 | 2 | 100% | 92.4% | 984 | 0.57 / 0.01 = 57 | ortholog_one2one: Hoxc13 | 1 |
p3 | q3 | +/+ | ENSP00000243103 | HOXC12 | q3 | q3 | 516 | 15 | 102764887 | 102766548 | 1 | 2 | 100% | 81.3% | 942 | 0.51 / 0.01 = 51 | ortholog_one2one: Hoxc12 | 1 |
p4 | q4 | +/+ | ENSP00000243082 | HOXC11 | q4 | q4 | 621 | 15 | 102782560 | 102784732 | 1 | 2 | 100% | 94% | 951 | 0.56 / 0.01 = 56 | ortholog_one2one: HXC11_MOUSE | 1 |
p5 | q5 | +/+ | ENSP00000307321 | HOXC10 | q5 | q5 | 695 | 15 | 102794892 | 102799106 | 1 | 2 | 100% | 97.4% | 1026 | 0.59 / 0.01 = 59 | ortholog_one2one: Hoxc10 | 1 |
p6 | q6 | +/+ | ENSP00000302836 | HOXC9 | q6 | q6 | 553 | 15 | 102809687 | 102812170 | 1 | 2 | 100% | 99.2% | 786 | 0.52 / 0.01 = 52 | ortholog_one2one: Hoxc9 | 1 |
p7 | q7 | +/+ | ENSP00000040584 | HOXC8 | q7 | q7 | 462 | 15 | 102818814 | 102820808 | 1 | 2 | 89.3% | 87.5% | 714 | 0.34 / 0.01 = 34 | ortholog_one2one: Hoxc8 | 1 |
p8 | q8 | +/+ | ENSP00000243108 | HOXC6 | q8 | q8 | 458 | 15 | 102837640 | 102839021 | 1 | 2 | 92.8% | 97.8% | 675 | 0.56 / 0.06 = 9.33 | ortholog_one2one: Hoxc6 | 1 |
p9 | q9 | +/+ | ENSP00000309336 | HOXC5 | q9 | q9 | 465 | 15 | 102842116 | 102843473 | 1 | 2 | 100% | 95.7% | 699 | 0.57 / 0.01 = 57 | ortholog_one2one: Hoxc5 | 1 |
p10 | q10 | +/+ | ENSP00000305973 | HOXC4 | q10 | q10 | 507 | 15 | 102862757 | 102864023 | 1 | 2 | 100% | 90.2% | 798 | 0.51 / 0.1 = 5.1 | ortholog_one2one: Hoxc4 | 1 |
p11 | q11 | +/+ | ENSP00000338606 | SMUG1 | q11 | q11 | 512 | 15 | 102983717 | 102985929 | -1 | 2 | 98.5% | 86.6% | 825 | 0.73 / 0.09 = 8.11 | ortholog_one2one: Smug1 | 1 |
p12 | q12 | +/+ | ENSP00000209875 | CBX5 | q12 | q12 | 393.5 | 15 | 103027678 | 103041242 | -1 | 4 | 100% | 95.4% | 585 | 0.37 / 0.02 = 18.5 | ortholog_one2one: Cbx5 | 1 |
p13 | q13 | +/+ | ENSP00000341826 | HNRPA1 | q13 | q13 | 392 | 15 | 103069937 | 103071816 | 1 | 3 | 50.8% | 83.5% | 672 | 0.01 / 0.3 = 0.03 | between_species_paralog: Hnrpa1 | 9 |
p14 | q14 | +/+ | ENSP00000312436 | NFE2 | q14 | q14 | 675.8 | 15 | 103076478 | 103079076 | -1 | 2 | 100% | 88.8% | 1125 | 0.74 / 0.11 = 6.73 | ortholog_one2one: Nfe2 | 1 |
region 3 (region 1 for Mmul)
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 11 -i 50799467:51402814 -f 45e4 some_geneID_to_be_selected
scoreRatio_sum=331.23 log_scoreRatio_sum=33.3 focal_scoreRatio_sum=119.67
AlnScore=12914 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Macaca_mulatta
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000262059 | CALCOCO1 | q1 | q1 | 1157.9 | 11 | 50799467 | 50813539 | -1 | 11 | 82.2% | 85.1% | 2037 | 0.94 / 0.18 = 5.22 | ortholog_one2one: CALCOCO1 | 1 |
p2 | q2 | +/+ | ENSP00000243056 | HOXC13 | q2 | q2 | 606 | 11 | 51036974 | 51043365 | 1 | 2 | 100% | 86.7% | 1035 | 0.57 / 0.06 = 9.5 | ortholog_one2one: HOXC13 | 1 |
p3 | q3 | +/+ | ENSP00000243103 | HOXC12 | q3 | q3 | 425 | 11 | 51052937 | 51053542 | 1 | 1 | 72.3% | 98% | 606 | 0.51 / 0.01 = 51 | ortholog_one2one: HOXC12 | 1 |
p4 | q4 | +/+ | ENSP00000243082 | HOXC11 | q4 | q4 | 610 | 11 | 51071312 | 51073479 | 1 | 2 | 99% | 96.3% | 903 | 0.56 / 0.03 = 18.67 | ortholog_one2one: HOXC11 | 1 |
p5 | q5 | +/+ | ENSP00000307321 | HOXC10 | q5 | q5 | 568 | 11 | 51083777 | 51087885 | 1 | 2 | 81% | 98.6% | 831 | 0.59 / 0.19 = 3.11 | ortholog_one2one: HOXC10 | 1 |
p6 | q6 | +/+ | ENSP00000302836 | HOXC9 | q6 | q6 | 555 | 11 | 51098616 | 51101089 | 1 | 2 | 100% | 95.6% | 825 | 0.52 / 0.01 = 52 | ortholog_one2one: HOXC9 | 1 |
p7 | q7 | +/+ | ENSP00000040584 | HOXC8 | q7 | q7 | 455 | 11 | 51107689 | 51109686 | 1 | 2 | 88% | 90.5% | 669 | 0.34 / 0.02 = 17 | ortholog_one2one: HOXC8 | 1 |
p8 | q8 | +/+ | ENSP00000243108 | HOXC6 | q8 | q8 | 491 | 11 | 51127353 | 51128787 | 1 | 2 | 100% | 97.9% | 726 | 0.56 / 0.01 = 56 | ortholog_one2one: HOXC6 | 1 |
p9 | q9 | +/+ | ENSP00000309336 | HOXC5 | q9 | q9 | 314 | 11 | 51131926 | 51132378 | 1 | 1 | 68% | 99.3% | 453 | 0.57 / 0.32 = 1.78 | ortholog_one2one: HOXC5 | 1 |
p10 | q10 | +/+ | ENSP00000305973 | HOXC4 | q10 | q10 | 518 | 11 | 51153294 | 51154580 | 1 | 2 | 100% | 92.8% | 792 | 0.51 / 0.08 = 6.38 | ortholog_one2one: HOXC4 | 1 |
p11 | q11 | +/+ | ENSP00000338606 | SMUG1 | q11 | q11 | 553 | 11 | 51281980 | 51283824 | -1 | 2 | 100% | 97.4% | 813 | 0.73 / 0.02 = 36.5 | ortholog_one2one: SMUG1 | 1 |
p12 | q12 | +/+ | ENSP00000209875 | CBX5 | q12 | q12 | 399.7 | 11 | 51344412 | 51363039 | -1 | 4 | 100% | 94.5% | 603 | 0.37 / 0.01 = 37 | ortholog_one2one: CBX5 | 1 |
p13 | q13 | +/+ | ENSP00000341826 | HNRPA1 | q13 | q13 | 478 | 11 | 51388168 | 51390759 | 1 | 4 | 65.6% | 76% | 960 | 0.01 / 0.14 = 0.07 | ortholog_one2many: ENSMMUG00000012989 | noData |
p14 | q14 | +/+ | ENSP00000312436 | NFE2 | q14 | q14 | 746.7 | 11 | 51399610 | 51402814 | -1 | 2 | 100% | 94.6% | 1173 | 0.74 / 0.02 = 37 | ortholog_one2one: NFE2 | 1 |
region 4 (region 1 for Cfam)
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 27 -i 4008479:5021721 -f 76e4 some_geneID_to_be_selected
scoreRatio_sum=257.8 log_scoreRatio_sum=30.56 focal_scoreRatio_sum=66.01
AlnScore=12209 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Canis_familiaris
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
--- | q1 | gaps | - | - | - | q1 | - | - | - | - | - | - | - | - | - | - | - | - |
p1 | q2 | +/+ | ENSP00000262059 | CALCOCO1 | q2 | q2 | 1116 | 27 | 4529145 | 4542635 | 1 | 11 | 87.1% | 85.8% | 1926 | 0.94 / 0.21 = 4.48 | ortholog_one2one: 486505 | 1 |
p2 | q3 | +/+ | ENSP00000243056 | HOXC13 | q3 | q3 | 534 | 27 | 4318373 | 4324857 | -1 | 2 | 100% | 75.6% | 1065 | 0.57 / 0.17 = 3.35 | ortholog_one2one: HOXC13 | 1 |
p3 | q4 | +/+ | ENSP00000243103 | HOXC12 | q4 | q4 | 486 | 27 | 4307268 | 4308845 | -1 | 2 | 100% | 82.8% | 867 | 0.51 / 0.01 = 51 | ortholog_one2one: HOXC12 | 1 |
p4 | q5 | +/+ | ENSP00000243082 | HOXC11 | q5 | q5 | 549 | 27 | 4288983 | 4291010 | -1 | 2 | 99% | 88.1% | 906 | 0.56 / 0.13 = 4.31 | ortholog_one2one: HOXC11 | 1 |
p5 | q6 | +/+ | ENSP00000307321 | HOXC10 | q6 | q6 | 657 | 27 | 4274733 | 4278914 | -1 | 2 | 100% | 92.4% | 1026 | 0.59 / 0.07 = 8.43 | ortholog_one2one: HOXC10 | 1 |
p6 | --- | gapq | ENSP00000302836 | HOXC9 | q6 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q7 | +/+ | ENSP00000040584 | HOXC8 | q7 | q7 | 454 | 27 | 4254360 | 4256431 | -1 | 2 | 90.1% | 89% | 681 | 0.34 / 0.03 = 11.33 | ortholog_one2one: 607052 | 1 |
p8 | q8 | +/+ | ENSP00000243108 | HOXC6 | q8 | q8 | 489 | 27 | 4235998 | 4237443 | -1 | 2 | 100% | 97.5% | 726 | 0.56 / 0.01 = 56 | ortholog_one2one: 486499 | 1 |
p9 | q9 | +/+ | ENSP00000309336 | HOXC5 | q9 | q9 | 450 | 27 | 4231281 | 4232665 | -1 | 2 | 100% | 93.1% | 693 | 0.57 / 0.03 = 19 | ortholog_one2one: 607625 | 1 |
p10 | q10 | +/+ | ENSP00000305973 | HOXC4 | q10 | q10 | 562 | 27 | 4211935 | 4213230 | -1 | 2 | 100% | 99.2% | 792 | 0.51 / 0.01 = 51 | ortholog_one2one: 486498 | 1 |
p11 | q11 | +/+ | ENSP00000338606 | SMUG1 | q11 | q11 | 485 | 27 | 4090464 | 4092280 | 1 | 2 | 100% | 85.2% | 813 | 0.73 / 0.14 = 5.21 | ortholog_one2one: 486497 | 1 |
p12 | q12 | +/+ | ENSP00000209875 | CBX5 | q12 | q12 | 399.7 | 27 | 4040285 | 4050441 | 1 | 4 | 100% | 95% | 600 | 0.37 / 0.01 = 37 | ortholog_one2one: 477593 | 1 |
p13 | q13 | +/+ | ENSP00000341826 | HNRPA1 | q13 | q13 | 551.4 | 27 | 4017226 | 4019929 | -1 | 4 | 75% | 78% | 1062 | 0.01 / 0.01 = 1 | between_species_paralog: 476099 | 3 |
p14 | q14 | +/+ | ENSP00000312436 | NFE2 | q14 | q14 | 659.4 | 27 | 4008479 | 4010923 | 1 | 2 | 100% | 88.5% | 1125 | 0.74 / 0.13 = 5.69 | ortholog_one2one: 486495 | 1 |
region 5 (region 1 for Btau)
retrieve target region: getEnsemblProteins.pl -h Bos_taurus -l 5 -i 16526128:16874969 -f 26e4 some_geneID_to_be_selected
scoreRatio_sum=362.79 log_scoreRatio_sum=31.94 focal_scoreRatio_sum=126.19
AlnScore=11686 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Bos_taurus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 626 | 5 | 16868572 | 16874969 | -1 | 2 | 100% | 90.3% | 993 | 0.57 / 0.02 = 28.5 | ortholog_one2one: HOXC13 | 1 |
p3 | q2 | +/+ | ENSP00000243103 | HOXC12 | q2 | q2 | 539 | 5 | 16857536 | 16859124 | -1 | 2 | 100% | 90.1% | 870 | 0.51 / 0.01 = 51 | ortholog_one2one: HOXC12 | 1 |
p4 | q3 | +/+ | ENSP00000243082 | HOXC11 | q3 | q3 | 606 | 5 | 16838893 | 16841078 | -1 | 2 | 98.4% | 96.7% | 897 | 0.56 / 0.04 = 14 | ortholog_one2one: HOXC11 | 1 |
p5 | --- | gapq | ENSP00000307321 | HOXC10 | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | q4 | +/+ | ENSP00000302836 | HOXC9 | q4 | q4 | 553 | 5 | 16811866 | 16814511 | -1 | 2 | 100% | 99.2% | 786 | 0.52 / 0.01 = 52 | ortholog_one2one: HOXC9 | 1 |
p7 | q5 | +/+ | ENSP00000040584 | HOXC8 | q5 | q5 | 342 | 5 | 16772489 | 16774359 | -1 | 2 | 65.7% | 88.7% | 504 | 0.34 / 0.27 = 1.26 | ortholog_one2one: HOXC8 | 1 |
p8 | q6 | +/+ | ENSP00000243108 | HOXC6 | q6 | q6 | 489 | 5 | 16754275 | 16755703 | -1 | 2 | 100% | 97.5% | 726 | 0.56 / 0.01 = 56 | ortholog_one2one: Q28015_BOVIN | 1 |
p9 | q7 | +/+ | ENSP00000309336 | HOXC5 | q7 | q7 | 460 | 5 | 16749677 | 16751039 | -1 | 2 | 100% | 94.9% | 702 | 0.57 / 0.01 = 57 | ortholog_one2one: HOXC5 | 1 |
p10 | q8 | +/+ | ENSP00000305973 | HOXC4 | q8 | q8 | 569 | 5 | 16729786 | 16731061 | -1 | 2 | 100% | 90% | 900 | 0.51 / 0.01 = 51 | ortholog_one2one: HOXC4 | 1 |
p11 | q9 | +/+ | ENSP00000338606 | SMUG1 | q9 | q9 | 504 | 5 | 16609804 | 16611606 | 1 | 2 | 99.3% | 89.2% | 807 | 0.73 / 0.11 = 6.64 | ortholog_one2one: SMUG1_BOVIN | 1 |
p12 | q10 | +/+ | ENSP00000209875 | CBX5 | q10 | q10 | 401.7 | 5 | 16554116 | 16563425 | 1 | 4 | 100% | 95.5% | 600 | 0.37 / 0.01 = 37 | apparent_ortholog_one2one: Q52T68_BOVIN | 1 |
p13 | q11 | +/+ | ENSP00000341826 | HNRPA1 | q11 | q11 | 523.6 | 5 | 16533665 | 16536290 | -1 | 5 | 65.3% | 99.2% | 741 | 0.01 / 0.06 = 0.17 | ortholog_one2many: ROA1_BOVIN | 4 |
p14 | q12 | +/+ | ENSP00000312436 | NFE2 | q12 | q12 | 691.9 | 5 | 16526128 | 16528480 | 1 | 2 | 100% | 91% | 1128 | 0.74 / 0.09 = 8.22 | ortholog_one2one: NP_001014923.1 | 1 |
region 6 (region 1 for Olat)
retrieve target region: getEnsemblProteins.pl -h Oryzias_latipes -l 7 -i 12781664:12979066 -f 15e4 some_geneID_to_be_selected
scoreRatio_sum=23.67 log_scoreRatio_sum=2.83 focal_scoreRatio_sum=8.26
AlnScore=7720 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Oryzias_latipes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000262059 | CALCOCO1 | q1 | q1 | 234.9 | 7 | 12781664 | 12786178 | -1 | 4 | 55.4% | 33.3% | 1245 | 0.94 / 0.83 = 1.13 | ortholog_one2one: ENSORLG00000007883 | 1 |
p2 | q2 | +/+ | ENSP00000243056 | HOXC13 | q2 | q2 | 480 | 7 | 12836622 | 12839106 | 1 | 2 | 100% | 70.2% | 918 | 0.57 / 0.25 = 2.28 | ortholog_one2one: Q3V600_ORYLA | 1 |
p3 | q3 | +/+ | ENSP00000243103 | HOXC12 | q3 | q3 | 368 | 7 | 12845783 | 12847609 | 1 | 2 | 99.6% | 65.8% | 828 | 0.51 / 0.09 = 5.67 | ortholog_one2one: Q3V601_ORYLA | 1 |
p4 | q4 | +/+ | ENSP00000243082 | HOXC11 | q4 | q4 | 415 | 7 | 12857047 | 12859665 | 1 | 2 | 98.7% | 66.6% | 930 | 0.56 / 0.34 = 1.65 | ortholog_one2many: Q90ZG3_ORYLA | 1 |
p5 | q5 | +/+ | ENSP00000307321 | HOXC10 | q5 | q5 | 216.6 | 7 | 12866025 | 12868489 | 1 | 2 | 100% | 39% | 984 | 0.59 / 0.69 = 0.86 | noComparaHits: Q3V603_ORYLA | 3 |
p6 | q6 | +/+ | ENSP00000302836 | HOXC9 | q6 | q6 | 409 | 7 | 12875582 | 12877182 | 1 | 2 | 99.2% | 73.1% | 780 | 0.52 / 0.26 = 2 | ortholog_one2one: HXC9_ORYLA | 1 |
p7 | q7 | +/+ | ENSP00000040584 | HOXC8 | q7 | q7 | 421 | 7 | 12880841 | 12882567 | 1 | 2 | 89.7% | 87.6% | 651 | 0.34 / 0.1 = 3.4 | noComparaHits: HXC9_ORYLA
; Q3V609_ORYLA |
1 |
p8 | q8 | +/+ | ENSP00000243108 | HOXC6 | q8 | q8 | 364 | 7 | 12891828 | 12892930 | 1 | 2 | 99.1% | 72.5% | 717 | 0.56 / 0.25 = 2.24 | noComparaHits: HXC9_ORYLA
; Q3V609_ORYLA |
1 |
p9 | q9 | +/+ | ENSP00000309336 | HOXC5 | q9 | q9 | 135 | 7 | 12895763 | 12895993 | 1 | 1 | 34.7% | 81.8% | 231 | 0.57 / 0.71 = 0.8 | ortholog_one2one: Q3V607_ORYLA | 1 |
p10 | q10 | +/+ | ENSP00000305973 | HOXC4 | q10 | q10 | 355 | 7 | 12904751 | 12906049 | 1 | 2 | 100% | 66.9% | 783 | 0.51 / 0.37 = 1.38 | ortholog_one2one: HXC4_ORYLA | 1 |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q11 | +/+ | ENSP00000209875 | CBX5 | q11 | q11 | 278 | 7 | 12970430 | 12973774 | -1 | 4 | 100% | 61.3% | 636 | 0.37 / 0.3 = 1.23 | ortholog_one2one: ENSORLG00000007971 | 1 |
p13 | q12 | +/+ | ENSP00000341826 | HNRPA1 | q12 | q12 | 403.5 | 7 | 12975670 | 12977062 | 1 | 4 | 94.4% | 52.4% | 1182 | 0.01 / 0.28 = 0.04 | between_species_paralog: ENSORLG00000008001 | 1 |
p14 | q13 | +/+ | ENSP00000312436 | NFE2 | q13 | q13 | 190 | 7 | 12978623 | 12979066 | -1 | 1 | 40.2% | 64.7% | 444 | 0.74 / 0.75 = 0.99 | noComparaHits: | 2 |
region 7 (region 1 for Trub)
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_66 -i 66101:225073 -f 12e4 some_geneID_to_be_selected
scoreRatio_sum=26.33 log_scoreRatio_sum=3.06 focal_scoreRatio_sum=9.1
AlnScore=7467 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Takifugu_rubripes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 499 | scaffold_66 | 191837 | 194602 | -1 | 2 | 100% | 71.6% | 924 | 0.57 / 0.22 = 2.59 | ortholog_one2one: NEWSINFRUG00000149366 | 1 |
p3 | q2 | +/+ | ENSP00000243103 | HOXC12 | q2 | q2 | 378 | scaffold_66 | 183469 | 185171 | -1 | 2 | 100% | 66.1% | 837 | 0.51 / 0.06 = 8.5 | ortholog_one2one: NEWSINFRUG00000164408 | 1 |
p4 | q3 | +/+ | ENSP00000243082 | HOXC11 | q3 | q3 | 402 | scaffold_66 | 171697 | 173892 | -1 | 2 | 100% | 64% | 972 | 0.56 / 0.36 = 1.56 | ortholog_one2many: NEWSINFRUG00000149367 | 1 |
p5 | q4 | +/+ | ENSP00000307321 | HOXC10 | q4 | q4 | 206.5 | scaffold_66 | 162817 | 165131 | -1 | 2 | 64% | 51.1% | 669 | 0.59 / 0.7 = 0.84 | noComparaHits: NEWSINFRUG00000146333 | 3 |
p6 | q5 | +/+ | ENSP00000302836 | HOXC9 | q5 | q5 | 399 | scaffold_66 | 154982 | 156667 | -1 | 2 | 99.6% | 69.4% | 810 | 0.52 / 0.28 = 1.86 | ortholog_one2one: HXC9_FUGRU | 1 |
p7 | q6 | +/+ | ENSP00000040584 | HOXC8 | q6 | q6 | 427 | scaffold_66 | 149217 | 151058 | -1 | 2 | 90.5% | 88.1% | 657 | 0.34 / 0.08 = 4.25 | ortholog_one2one: O42503_FUGRU | 1 |
p8 | q7 | +/+ | ENSP00000243108 | HOXC6 | q7 | q7 | 368 | scaffold_66 | 139091 | 140214 | -1 | 2 | 100% | 73.7% | 708 | 0.56 / 0.25 = 2.24 | ortholog_one2one: O42504_FUGRU | 1 |
p9 | q8 | +/+ | ENSP00000309336 | HOXC5 | q8 | q8 | 135 | scaffold_66 | 135771 | 135977 | -1 | 1 | 31.1% | 91.3% | 207 | 0.57 / 0.71 = 0.8 | ortholog_one2one: NEWSINFRUG00000146325 | 1 |
p10 | q9 | +/+ | ENSP00000305973 | HOXC4 | q9 | q9 | 368 | scaffold_66 | 126560 | 127863 | -1 | 2 | 100% | 68.8% | 792 | 0.51 / 0.34 = 1.5 | ortholog_one2one: NEWSINFRUG00000146324 | 1 |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q10 | +/+ | ENSP00000209875 | CBX5 | q10 | q10 | 273 | scaffold_66 | 71311 | 73952 | 1 | 4 | 97.9% | 64.2% | 594 | 0.37 / 0.32 = 1.16 | ortholog_one2one: NEWSINFRUG00000146323 | 1 |
p13 | q11 | +/+ | ENSP00000341826 | HNRPA1 | q11 | q11 | 333.5 | scaffold_66 | 68705 | 69532 | -1 | 3 | 54.8% | 70.1% | 672 | 0.01 / 0.4 = 0.03 | between_species_paralog: NEWSINFRUG00000146321 | 1 |
p14 | q12 | +/+ | ENSP00000312436 | NFE2 | q12 | q12 | 192 | scaffold_66 | 66101 | 66628 | 1 | 1 | 47.7% | 57.5% | 528 | 0.74 / 0.74 = 1 | ortholog_one2one: NEWSINFRUG00000146319 | 1 |
region 8 (region 1 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l groupXII -i 11539588:11716245 -f 13e4 some_geneID_to_be_selected
scoreRatio_sum=20.34 log_scoreRatio_sum=0.98 focal_scoreRatio_sum=7.47
AlnScore=7243 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000262059 | CALCOCO1 | q1 | q1 | 148.7 | groupXII | 11539588 | 11542115 | -1 | 3 | 19.1% | 46.8% | 417 | 0.94 / 0.89 = 1.06 | ortholog_one2one: ENSGACG00000009377 | 1 |
p2 | q2 | +/+ | ENSP00000243056 | HOXC13 | q2 | q2 | 489 | groupXII | 11575429 | 11578165 | 1 | 2 | 99.7% | 71% | 915 | 0.57 / 0.24 = 2.37 | ortholog_one2one: ENSGACG00000009389 | 1 |
p3 | q3 | +/+ | ENSP00000243103 | HOXC12 | q3 | q3 | 326.2 | groupXII | 11585448 | 11587454 | 1 | 2 | 89.4% | 65.5% | 747 | 0.51 / 0.19 = 2.68 | ortholog_one2one: ENSGACG00000009391 | 1 |
p4 | q4 | +/+ | ENSP00000243082 | HOXC11 | q4 | q4 | 414 | groupXII | 11597219 | 11599472 | 1 | 2 | 100% | 65.2% | 954 | 0.56 / 0.34 = 1.65 | ortholog_one2many: ENSGACG00000009392 | 1 |
p5 | q5 | +/+ | ENSP00000307321 | HOXC10 | q5 | q5 | 213.8 | groupXII | 11606255 | 11609065 | 1 | 2 | 67.5% | 48.1% | 717 | 0.59 / 0.69 = 0.86 | noComparaHits: ENSGACG00000009394 | 3 |
p6 | q6 | +/+ | ENSP00000302836 | HOXC9 | q6 | q6 | 409 | groupXII | 11616265 | 11618047 | 1 | 2 | 99.6% | 73.9% | 783 | 0.52 / 0.26 = 2 | ortholog_one2one: ENSGACG00000009396 | 1 |
p7 | q7 | +/+ | ENSP00000040584 | HOXC8 | q7 | q7 | 419 | groupXII | 11622080 | 11624016 | 1 | 2 | 88.8% | 86.3% | 657 | 0.34 / 0.1 = 3.4 | ortholog_one2one: ENSGACG00000009401 | 1 |
p8 | q8 | +/+ | ENSP00000243108 | HOXC6 | q8 | q8 | 365 | groupXII | 11633747 | 11634898 | 1 | 2 | 96.6% | 74.9% | 702 | 0.56 / 0.25 = 2.24 | ortholog_one2one: Q4VQD3_GASAC | 1 |
p9 | q9 | +/+ | ENSP00000309336 | HOXC5 | q9 | q9 | 135 | groupXII | 11638292 | 11638522 | 1 | 1 | 34.7% | 80.5% | 231 | 0.57 / 0.71 = 0.8 | ortholog_one2one: ENSGACG00000009416 | 1 |
p10 | q10 | +/+ | ENSP00000305973 | HOXC4 | q10 | q10 | 373 | groupXII | 11647407 | 11648707 | 1 | 2 | 100% | 69.5% | 792 | 0.51 / 0.34 = 1.5 | ortholog_one2one: ENSGACG00000009421 | 1 |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q11 | +/+ | ENSP00000209875 | CBX5 | q11 | q11 | 204.5 | groupXII | 11708653 | 11710250 | -1 | 3 | 74.3% | 63.3% | 468 | 0.37 / 0.49 = 0.76 | ortholog_one2one: ENSGACG00000009433 | 3 |
p13 | q12 | +/+ | ENSP00000341826 | HNRPA1 | q12 | q12 | 304.8 | groupXII | 11711994 | 11713700 | 1 | 2 | 80.4% | 48% | 1152 | 0.01 / 0.45 = 0.02 | between_species_paralog: ENSGACG00000009435 | 3 |
p14 | q13 | +/+ | ENSP00000312436 | NFE2 | q13 | q13 | 194 | groupXII | 11715415 | 11716245 | -1 | 1 | 64.3% | 44.3% | 831 | 0.74 / 0.74 = 1 | ortholog_one2one: ENSGACG00000009442 | 1 |
region 9 (region 1 for Tnig)
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l 9 -i 4148559:4311213 -f 12e4 some_geneID_to_be_selected
scoreRatio_sum=22.58 log_scoreRatio_sum=1.67 focal_scoreRatio_sum=8.05
AlnScore=7224 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Tetraodon_nigroviridis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 500 | 9 | 4183940 | 4186707 | 1 | 2 | 100% | 71.6% | 927 | 0.57 / 0.22 = 2.59 | ortholog_one2many: HOXC13
; GSTENG00028043001 |
1 |
p3 | q2 | +/+ | ENSP00000243103 | HOXC12 | q2 | q2 | 367 | 9 | 4193048 | 4194863 | 1 | 2 | 100% | 65.6% | 843 | 0.51 / 0.09 = 5.67 | ortholog_one2many: GSTENG00028042001
; HOXC12 |
1 |
p4 | q3 | +/+ | ENSP00000243082 | HOXC11 | q3 | q3 | 403 | 9 | 4205409 | 4207568 | 1 | 2 | 100% | 65% | 957 | 0.56 / 0.36 = 1.56 | between_species_paralog: GSTENG00028041001 | 1 |
p5 | q4 | +/+ | ENSP00000307321 | HOXC10 | q4 | q4 | 207.1 | 9 | 4213950 | 4216234 | 1 | 2 | 59.9% | 53.7% | 639 | 0.59 / 0.7 = 0.84 | noComparaHits: HOXC10
; GSTENG00028041001 |
4 |
p6 | q5 | +/+ | ENSP00000302836 | HOXC9 | q5 | q5 | 390 | 9 | 4222544 | 4224265 | 1 | 2 | 99.6% | 68.1% | 819 | 0.52 / 0.29 = 1.79 | ortholog_one2many: HOXC9
; GSTENG00028039001 |
1 |
p7 | q6 | +/+ | ENSP00000040584 | HOXC8 | q6 | q6 | 424 | 9 | 4228016 | 4229943 | 1 | 2 | 88.8% | 88.8% | 645 | 0.34 / 0.09 = 3.78 | ortholog_one2one: HOXC8 | 1 |
p8 | q7 | +/+ | ENSP00000243108 | HOXC6 | q7 | q7 | 370.6 | 9 | 4239684 | 4240805 | 1 | 3 | 99.6% | 74.6% | 711 | 0.56 / 0.24 = 2.33 | ortholog_one2one: HOXC6 | 1 |
p9 | q8 | +/+ | ENSP00000309336 | HOXC5 | q8 | q8 | 137 | 9 | 4243970 | 4244176 | 1 | 1 | 31.1% | 92.8% | 207 | 0.57 / 0.7 = 0.81 | between_species_paralog: HOXC5
; GSTENG00028038001 |
1 |
p10 | q9 | +/+ | ENSP00000305973 | HOXC4 | q9 | q9 | 366 | 9 | 4251930 | 4253228 | 1 | 2 | 100% | 68.4% | 795 | 0.51 / 0.35 = 1.46 | ortholog_one2many: GSTENG00028038001
; HOXC4 |
1 |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q10 | +/+ | ENSP00000209875 | CBX5 | q10 | q10 | 202.9 | 9 | 4304902 | 4305941 | -1 | 3 | 73.8% | 62% | 465 | 0.37 / 0.49 = 0.76 | ortholog_one2one: GSTENG00028035001 | 1 |
p13 | q11 | +/+ | ENSP00000341826 | HNRPA1 | q11 | q11 | 324.9 | 9 | 4307821 | 4308642 | 1 | 3 | 51.6% | 68.4% | 693 | 0.01 / 0.42 = 0.02 | between_species_paralog: GSTENG00028034001 | 1 |
p14 | q12 | +/+ | ENSP00000312436 | NFE2 | q12 | q12 | 182 | 9 | 4310779 | 4311213 | -1 | 1 | 38.9% | 60.7% | 435 | 0.74 / 0.76 = 0.97 | ortholog_one2one: GSTENG00028033001 | 1 |
region 10 (region 1 for Xtro)
retrieve target region: getEnsemblProteins.pl -h Xenopus_tropicalis -l scaffold_226 -i 280901:557959 -f 21e4 some_geneID_to_be_selected
scoreRatio_sum=39.3 log_scoreRatio_sum=10.24 focal_scoreRatio_sum=14.42
AlnScore=7062 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Xenopus_tropicalis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 483 | scaffold_226 | 280901 | 284157 | 1 | 2 | 100% | 69.3% | 918 | 0.57 / 0.25 = 2.28 | between_species_paralog: ENSXETG00000025184 | 1 |
p3 | q2 | +/+ | ENSP00000243103 | HOXC12 | q2 | q2 | 393 | scaffold_226 | 343006 | 344320 | 1 | 2 | 100% | 70.6% | 792 | 0.51 / 0.03 = 17 | noComparaHits: ENSXETG00000023470 | 1 |
p4 | q3 | +/+ | ENSP00000243082 | HOXC11 | q3 | q3 | 422 | scaffold_226 | 362368 | 364628 | 1 | 2 | 100% | 69.7% | 936 | 0.56 / 0.33 = 1.7 | apparent_ortholog_one2one: HOXC11 | 1 |
p5 | q4 | +/+ | ENSP00000307321 | HOXC10 | q4 | q4 | 478 | scaffold_226 | 374651 | 378201 | 1 | 2 | 100% | 67.3% | 1053 | 0.59 / 0.32 = 1.84 | ortholog_one2one: HOXC10 | 1 |
p6 | q5 | +/+ | ENSP00000302836 | HOXC9 | q5 | q5 | 464 | scaffold_226 | 388156 | 390498 | 1 | 2 | 100% | 83.6% | 783 | 0.52 / 0.16 = 3.25 | noComparaHits: hoxc9 | 1 |
p7 | q6 | +/+ | ENSP00000040584 | HOXC8 | q6 | q6 | 440 | scaffold_226 | 396316 | 398530 | 1 | 2 | 89.7% | 92.2% | 657 | 0.34 / 0.06 = 5.67 | ortholog_one2one: hoxc8 | 1 |
p8 | q7 | +/+ | ENSP00000243108 | HOXC6 | q7 | q7 | 422 | scaffold_226 | 418988 | 420489 | 1 | 2 | 97.4% | 86.5% | 690 | 0.56 / 0.14 = 4 | ortholog_one2one: HOXC6 | 1 |
p9 | q8 | +/+ | ENSP00000309336 | HOXC5 | q8 | q8 | 330 | scaffold_226 | 422390 | 423774 | 1 | 2 | 100% | 70.6% | 678 | 0.57 / 0.29 = 1.97 | ortholog_one2one: HOXC5 | 1 |
p10 | q9 | +/+ | ENSP00000305973 | HOXC4 | q9 | q9 | 383 | scaffold_226 | 463073 | 464312 | 1 | 2 | 100% | 71.9% | 795 | 0.51 / 0.32 = 1.59 | ortholog_one2one: HOXC4 | 1 |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gapq | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gapq | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gapq | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
--- | q10 | gape | - | - | - | q10 | - | - | - | - | - | - | - | - | - | - | - | - |
region 11 (region 1 for Drer)
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 23 -i 35580664:35921769 -f 26e4 some_geneID_to_be_selected
scoreRatio_sum=24.94 log_scoreRatio_sum=4.13 focal_scoreRatio_sum=9.36
AlnScore=7050 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000262059 | CALCOCO1 | q1 | q1 | 137.9 | 23 | 35580664 | 35582160 | -1 | 2 | 19.7% | 41.1% | 504 | 0.94 / 0.9 = 1.04 | noComparaHits: calcoco1 | 1 |
p2 | q2 | +/+ | ENSP00000243056 | HOXC13 | q2 | q2 | 488 | 23 | 35634466 | 35637164 | 1 | 2 | 99.7% | 71.3% | 924 | 0.57 / 0.24 = 2.37 | ortholog_one2many: hoxc13a | 1 |
p3 | q3 | +/+ | ENSP00000243103 | HOXC12 | q3 | q3 | 370 | 23 | 35645087 | 35646667 | 1 | 2 | 100% | 65.9% | 843 | 0.51 / 0.08 = 6.38 | noComparaHits: Q4PR84_BRARE | 1 |
p4 | q4 | +/+ | ENSP00000243082 | HOXC11 | q4 | q4 | 410 | 23 | 35656397 | 35658682 | 1 | 2 | 100% | 64.6% | 942 | 0.56 / 0.35 = 1.6 | ortholog_one2many: hoxc11a | 1 |
p5 | q5 | +/+ | ENSP00000307321 | HOXC10 | q5 | q5 | 257.4 | 23 | 35665105 | 35667851 | 1 | 2 | 94.4% | 45.2% | 1005 | 0.59 / 0.63 = 0.94 | noComparaHits: Q4PR86_BRARE | 2 |
p6 | q6 | +/+ | ENSP00000302836 | HOXC9 | q6 | q6 | 403 | 23 | 35676857 | 35678692 | 1 | 2 | 99.6% | 72.3% | 777 | 0.52 / 0.27 = 1.93 | ortholog_one2one: hoxc9a | 1 |
p7 | q7 | +/+ | ENSP00000040584 | HOXC8 | q7 | q7 | 438 | 23 | 35682935 | 35684949 | 1 | 2 | 100% | 82% | 750 | 0.34 / 0.06 = 5.67 | ortholog_one2one: hoxc8a | 1 |
p8 | q8 | +/+ | ENSP00000243108 | HOXC6 | q8 | q8 | 367 | 23 | 35696960 | 35698247 | 1 | 2 | 98.3% | 73.1% | 696 | 0.56 / 0.25 = 2.24 | ortholog_one2many: hoxc6a | 1 |
p9 | q9 | +/+ | ENSP00000309336 | HOXC5 | q9 | q9 | 226.4 | 23 | 35700226 | 35701742 | 1 | 2 | 100% | 53.6% | 699 | 0.57 / 0.51 = 1.12 | ortholog_one2one: hoxc5a | 1 |
p10 | q10 | +/+ | ENSP00000305973 | HOXC4 | q10 | q10 | 381 | 23 | 35712551 | 35713874 | 1 | 2 | 100% | 69% | 804 | 0.51 / 0.32 = 1.59 | ortholog_one2one: hoxc4a | 1 |
--- | q11 | gapp | - | - | - | q11 | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gapq | ENSP00000209875 | CBX5 | q13 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | q12 | /+ | ENSP00000341826 | HNRPA1 | q12 | q12 | 456.9 | 23 | 35912140 | 35913858 | -1 | 4 | 75.3% | 65% | 1050 | 0.01 / 0.18 = 0.06 | between_species_paralog: hnrpa1 | 1 |
p14 | --- | gapq | ENSP00000312436 | NFE2 | q11 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
--- | q13 | gape | - | - | - | q13 | - | - | - | - | - | - | - | - | - | - | - | - |
region 12 (region 2 for Xtro)
retrieve target region: getEnsemblProteins.pl -h Xenopus_tropicalis -l scaffold_56 -i 1080173:1965575 -f 66e4 some_geneID_to_be_selected
scoreRatio_sum=9.15 log_scoreRatio_sum=-4.41 focal_scoreRatio_sum=3.2
AlnScore=4651 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Xenopus_tropicalis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 300 | scaffold_56 | 1384790 | 1386293 | 1 | 2 | 98.2% | 48.8% | 924 | 0.57 / 0.53 = 1.08 | between_species_paralog: HOXA13 | 2 |
p3 | --- | gapq | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q2 | +/+ | ENSP00000243082 | HOXC11 | q2 | q2 | 284 | scaffold_56 | 1397307 | 1399145 | 1 | 2 | 72% | 62.8% | 684 | 0.56 / 0.55 = 1.02 | between_species_paralog: HOXA11 | 2 |
p5 | q3 | +/+ | ENSP00000307321 | HOXC10 | q3 | q3 | 241 | scaffold_56 | 1407357 | 1409254 | 1 | 2 | 100% | 42.2% | 1035 | 0.59 / 0.65 = 0.91 | noComparaHits: HOXA10 | 3 |
p6 | q4 | +/+ | ENSP00000302836 | HOXC9 | q4 | q4 | 266 | scaffold_56 | 1415310 | 1416635 | 1 | 2 | 99.2% | 52.3% | 840 | 0.52 / 0.52 = 1 | noComparaHits: ENSXETG00000000724 | 3 |
p7 | q5 | +/+ | ENSP00000040584 | HOXC8 | q5 | q5 | 115 | scaffold_56 | 1423126 | 1423392 | 1 | 1 | 36% | 61.8% | 267 | 0.34 / 0.75 = 0.45 | noComparaHits: HOXA7 | 5 |
p8 | q6 | +/+ | ENSP00000243108 | HOXC6 | q6 | q6 | 203.1 | scaffold_56 | 1430023 | 1431432 | 1 | 2 | 97% | 45.3% | 714 | 0.56 / 0.58 = 0.97 | noComparaHits: ENSXETG00000027535 | 2 |
p9 | q7 | +/+ | ENSP00000309336 | HOXC5 | q7 | q7 | 191.2 | scaffold_56 | 1433019 | 1434394 | 1 | 2 | 97.3% | 45.2% | 768 | 0.57 / 0.59 = 0.97 | noComparaHits: hoxa5 | 3 |
p10 | q8 | +/+ | ENSP00000305973 | HOXC4 | q8 | q8 | 164 | scaffold_56 | 1444464 | 1444892 | 1 | 1 | 48.1% | 62.1% | 429 | 0.51 / 0.71 = 0.72 | between_species_paralog: HOXA4 | 4 |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q9 | +/+ | ENSP00000209875 | CBX5 | q9 | q9 | 253.4 | scaffold_56 | 1926749 | 1932470 | -1 | 4 | 92.7% | 65.4% | 528 | 0.37 / 0.36 = 1.03 | between_species_paralog: ENSXETG00000012175 | 3 |
p13 | q10 | +/+ | ENSP00000341826 | HNRPA1 | q10 | q10 | 403.3 | scaffold_56 | 1952434 | 1956331 | 1 | 5 | 62.1% | 75.9% | 711 | 0.01 / 0.28 = 0.04 | between_species_paralog: hnrpa2b1 | 2 |
p14 | q11 | +/+ | ENSP00000312436 | NFE2 | q11 | q11 | 168 | scaffold_56 | 1964769 | 1965575 | -1 | 1 | 60.6% | 38.8% | 807 | 0.74 / 0.77 = 0.96 | noComparaHits: TGas039m22.1 | 3 |
region 13 (region 2 for Hsap)
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 7 -i 26191449:27335677 -f 86e4 some_geneID_to_be_selected
scoreRatio_sum=8.91 log_scoreRatio_sum=-4.63 focal_scoreRatio_sum=3.1
AlnScore=4551 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Homo_sapiens
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
--- | q1 | gaps | - | - | - | q1 | - | - | - | - | - | - | - | - | - | - | - | - |
p1 | --- | gapq | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q2 | +/+ | ENSP00000243056 | HOXC13 | q2 | q2 | 261 | 7 | 27204354 | 27205807 | -1 | 2 | 73.3% | 57.9% | 741 | 0.57 / 0.59 = 0.97 | within_species_paralog: HOXA13 | 3 |
p3 | --- | gapq | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q3 | +/+ | ENSP00000243082 | HOXC11 | q3 | q3 | 275 | 7 | 27188943 | 27191285 | -1 | 2 | 76.3% | 58.8% | 702 | 0.56 / 0.56 = 1 | within_species_paralog: HOXA11 | 2 |
p5 | q4 | +/+ | ENSP00000307321 | HOXC10 | q4 | q4 | 221.4 | 7 | 27178046 | 27180282 | -1 | 2 | 64.3% | 51.2% | 756 | 0.59 / 0.68 = 0.87 | noComparaHits: HOXA10 | 3 |
p6 | q5 | +/+ | ENSP00000302836 | HOXC9 | q5 | q5 | 244.3 | 7 | 27169750 | 27171601 | -1 | 2 | 99.2% | 49.8% | 816 | 0.52 / 0.56 = 0.93 | within_species_paralog: HOXA9 | 3 |
p7 | q6 | +/+ | ENSP00000040584 | HOXC8 | q6 | q6 | 121 | 7 | 27161056 | 27161364 | -1 | 1 | 37.2% | 60.6% | 309 | 0.34 / 0.74 = 0.46 | noComparaHits: HOXA7 | 4 |
p8 | q7 | +/+ | ENSP00000243108 | HOXC6 | q7 | q7 | 214 | 7 | 27151817 | 27153893 | -1 | 2 | 91.5% | 47.3% | 735 | 0.56 / 0.56 = 1 | within_species_paralog: HOXA6 | 2 |
p9 | q8 | +/+ | ENSP00000309336 | HOXC5 | q8 | q8 | 196.2 | 7 | 27148018 | 27149751 | -1 | 2 | 97.3% | 45.9% | 756 | 0.57 / 0.57 = 1 | noComparaHits: HOXA5 | 2 |
p10 | q9 | +/+ | ENSP00000305973 | HOXC4 | q9 | q9 | 166 | 7 | 27135414 | 27135719 | -1 | 1 | 40.5% | 74.8% | 306 | 0.51 / 0.7 = 0.73 | within_species_paralog: HOXA4 | 4 |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q10 | +/+ | ENSP00000209875 | CBX5 | q10 | q10 | 245.8 | 7 | 26212564 | 26218341 | 1 | 4 | 86.4% | 61.4% | 540 | 0.37 / 0.38 = 0.97 | within_species_paralog: CBX3 | 3 |
p13 | q11 | +/+ | ENSP00000341826 | HNRPA1 | q11 | q11 | 418.2 | 7 | 26199394 | 26203877 | -1 | 5 | 76.1% | 67.7% | 879 | 0.01 / 0.25 = 0.04 | within_species_paralog: HNRPA2B1 | noData |
p14 | q12 | +/+ | ENSP00000312436 | NFE2 | q12 | q12 | 158 | 7 | 26191449 | 26191874 | 1 | 1 | 38.1% | 52.8% | 426 | 0.74 / 0.79 = 0.94 | noComparaHits: NFE2L3 | 4 |
region 14 (region 2 for Mmus)
retrieve target region: getEnsemblProteins.pl -h Mus_musculus -l 6 -i 51387539:52189921 -f 60e4 some_geneID_to_be_selected
scoreRatio_sum=8.94 log_scoreRatio_sum=-4.9 focal_scoreRatio_sum=3.12
AlnScore=4446 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Mus_musculus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 258 | 6 | 52188499 | 52189921 | -1 | 2 | 67.9% | 59.7% | 708 | 0.57 / 0.6 = 0.95 | between_species_paralog: Hoxa13 | 3 |
p3 | --- | gapq | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q2 | +/+ | ENSP00000243082 | HOXC11 | q2 | q2 | 282 | 6 | 52172946 | 52175296 | -1 | 2 | 70.1% | 62.8% | 663 | 0.56 / 0.55 = 1.02 | between_species_paralog: Hoxa11 | 2 |
p5 | q3 | +/+ | ENSP00000307321 | HOXC10 | q3 | q3 | 228.3 | 6 | 52162092 | 52164376 | -1 | 2 | 93.6% | 42.3% | 1068 | 0.59 / 0.67 = 0.88 | noComparaHits: Hoxa10 | 3 |
p6 | q4 | +/+ | ENSP00000302836 | HOXC9 | q4 | q4 | 248 | 6 | 52153830 | 52155687 | -1 | 2 | 99.2% | 50.4% | 831 | 0.52 / 0.55 = 0.95 | between_species_paralog: Hoxa9 | 3 |
p7 | q5 | +/+ | ENSP00000040584 | HOXC8 | q5 | q5 | 112 | 6 | 52145381 | 52145611 | -1 | 1 | 31.4% | 70.1% | 231 | 0.34 / 0.76 = 0.45 | noComparaHits: Hoxa7 | 4 |
p8 | q6 | +/+ | ENSP00000243108 | HOXC6 | q6 | q6 | 213.6 | 6 | 52135963 | 52138207 | -1 | 2 | 91.5% | 48.9% | 699 | 0.56 / 0.56 = 1 | between_species_paralog: Hoxa6 | 2 |
p9 | q7 | +/+ | ENSP00000309336 | HOXC5 | q7 | q7 | 197 | 6 | 52132203 | 52133933 | -1 | 2 | 98.2% | 45.7% | 771 | 0.57 / 0.57 = 1 | noComparaHits: Hoxa5
; Hoxa3 |
2 |
p10 | q8 | +/+ | ENSP00000305973 | HOXC4 | q8 | q8 | 164 | 6 | 52119970 | 52120275 | -1 | 1 | 40.5% | 73.8% | 306 | 0.51 / 0.71 = 0.72 | between_species_paralog: Hoxa4 | 4 |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q9 | +/+ | ENSP00000209875 | CBX5 | q9 | q9 | 249.2 | 6 | 51404820 | 51412177 | 1 | 4 | 91.6% | 66.3% | 498 | 0.37 / 0.37 = 1 | between_species_paralog: Cbx3 | 3 |
p13 | q10 | +/+ | ENSP00000341826 | HNRPA1 | q10 | q10 | 353.2 | 6 | 51393670 | 51396878 | -1 | 3 | 61.6% | 58.2% | 918 | 0.01 / 0.37 = 0.03 | between_species_paralog: Hnrpa2b1 | noData |
p14 | q11 | +/+ | ENSP00000312436 | NFE2 | q11 | q11 | 157 | 6 | 51387539 | 51387997 | 1 | 1 | 39.7% | 50.3% | 459 | 0.74 / 0.79 = 0.94 | noComparaHits: Nfe2l3 | 4 |
region 15 (region 2 for Cfam)
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 14 -i 42451676:43376476 -f 69e4 some_geneID_to_be_selected
scoreRatio_sum=8.82 log_scoreRatio_sum=-4.75 focal_scoreRatio_sum=3.06
AlnScore=4423 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Canis_familiaris
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 256 | 14 | 43328795 | 43330229 | -1 | 2 | 67% | 58.8% | 711 | 0.57 / 0.6 = 0.95 | between_species_paralog: 482375 | 2 |
p3 | --- | gapq | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q2 | +/+ | ENSP00000243082 | HOXC11 | q2 | q2 | 278 | 14 | 43312984 | 43315437 | -1 | 2 | 75.7% | 59.3% | 702 | 0.56 / 0.56 = 1 | between_species_paralog: HOXA11 | 2 |
p5 | q3 | +/+ | ENSP00000307321 | HOXC10 | q3 | q3 | 164 | 14 | 43301964 | 43302227 | -1 | 1 | 26% | 88.8% | 264 | 0.59 / 0.76 = 0.78 | noComparaHits: 482373 | 3 |
p6 | q4 | +/+ | ENSP00000302836 | HOXC9 | q4 | q4 | 248.4 | 14 | 43293507 | 43295428 | -1 | 2 | 99.2% | 47.7% | 909 | 0.52 / 0.55 = 0.95 | between_species_paralog: 482372 | 1 |
p7 | q5 | +/+ | ENSP00000040584 | HOXC8 | q5 | q5 | 111 | 14 | 43284774 | 43284974 | -1 | 1 | 28.1% | 77.9% | 201 | 0.34 / 0.76 = 0.45 | noComparaHits: 482371 | 7 |
p8 | q6 | +/+ | ENSP00000243108 | HOXC6 | q6 | q6 | 211.5 | 14 | 43275231 | 43277309 | -1 | 2 | 91.5% | 47.9% | 702 | 0.56 / 0.56 = 1 | between_species_paralog: 611383 | 2 |
p9 | q7 | +/+ | ENSP00000309336 | HOXC5 | q7 | q7 | 188.5 | 14 | 43271411 | 43273168 | -1 | 2 | 97.3% | 46.5% | 756 | 0.57 / 0.59 = 0.97 | noComparaHits: HOXA5 | 2 |
p10 | q8 | +/+ | ENSP00000305973 | HOXC4 | q8 | q8 | 167 | 14 | 43258553 | 43258876 | -1 | 1 | 42.8% | 72.6% | 324 | 0.51 / 0.7 = 0.73 | between_species_paralog: Q9XT68_CANFA | 4 |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q9 | +/+ | ENSP00000209875 | CBX5 | q9 | q9 | 249.2 | 14 | 42471594 | 42476948 | 1 | 4 | 91.6% | 66.3% | 498 | 0.37 / 0.37 = 1 | between_species_paralog: 612447 | 3 |
p13 | q10 | +/+ | ENSP00000341826 | HNRPA1 | q10 | q10 | 404.4 | 14 | 42459342 | 42463189 | -1 | 5 | 62.6% | 74.7% | 723 | 0.01 / 0.28 = 0.04 | between_species_paralog: 475260 | noData |
p14 | q11 | +/+ | ENSP00000312436 | NFE2 | q11 | q11 | 162 | 14 | 42451676 | 42452467 | 1 | 1 | 60.6% | 37.9% | 792 | 0.74 / 0.78 = 0.95 | noComparaHits: 482364 | 4 |
region 16 (region 1 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 2 -i 32118713:32895346 -f 58e4 some_geneID_to_be_selected
scoreRatio_sum=8.72 log_scoreRatio_sum=-4.86 focal_scoreRatio_sum=3.14
AlnScore=4189 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000262059 | CALCOCO1 | q1 | q1 | 118.6 | 2 | 32881535 | 32895346 | 1 | 2 | 17.1% | 47.1% | 354 | 0.94 / 0.91 = 1.03 | ortholog_one2many: Q9I8F3_CHICK | 1 |
p2 | q2 | +/+ | ENSP00000243056 | HOXC13 | q2 | q2 | 190 | 2 | 32621235 | 32621918 | -1 | 1 | 75.5% | 43.8% | 684 | 0.57 / 0.7 = 0.81 | noComparaHits: HXA13_CHICK | 3 |
p3 | --- | gapq | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q3 | +/+ | ENSP00000243082 | HOXC11 | q3 | q3 | 285 | 2 | 32600650 | 32603867 | -1 | 2 | 93.4% | 48.2% | 1020 | 0.56 / 0.54 = 1.04 | between_species_paralog: HXA11_CHICK | 2 |
p5 | q4 | +/+ | ENSP00000307321 | HOXC10 | q4 | q4 | 262.3 | 2 | 32588549 | 32590814 | -1 | 2 | 91.8% | 46% | 969 | 0.59 / 0.62 = 0.95 | noComparaHits: ENSGALG00000011072
; HOXA10 ; ENSGALG00000021833 |
2 |
p6 | q5 | +/+ | ENSP00000302836 | HOXC9 | q5 | q5 | 248 | 2 | 32579719 | 32581455 | -1 | 2 | 99.2% | 51.1% | 780 | 0.52 / 0.55 = 0.95 | between_species_paralog: HXA9_CHICK | 2 |
p7 | q6 | +/+ | ENSP00000040584 | HOXC8 | q6 | q6 | 122 | 2 | 32570326 | 32570613 | -1 | 1 | 39.7% | 59.4% | 288 | 0.34 / 0.73 = 0.47 | noComparaHits: HXA7_CHICK | 4 |
p8 | q7 | +/+ | ENSP00000243108 | HOXC6 | q7 | q7 | 192.4 | 2 | 32562124 | 32563595 | -1 | 2 | 86% | 47.7% | 642 | 0.56 / 0.6 = 0.93 | ortholog_one2many: HOXA6 | 1 |
p9 | q8 | +/+ | ENSP00000309336 | HOXC5 | q8 | q8 | 125 | 2 | 32558371 | 32558565 | -1 | 1 | 29.3% | 87.7% | 195 | 0.57 / 0.73 = 0.78 | noComparaHits: HOXA6 | 2 |
p10 | q9 | +/+ | ENSP00000305973 | HOXC4 | q9 | q9 | 163 | 2 | 32544822 | 32545148 | -1 | 1 | 41.3% | 70.6% | 327 | 0.51 / 0.71 = 0.72 | between_species_paralog: HXA4_CHICK | 3 |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q10 | +/+ | ENSP00000209875 | CBX5 | q10 | q10 | 251.4 | 2 | 32133175 | 32138521 | 1 | 4 | 91.6% | 67.4% | 501 | 0.37 / 0.37 = 1 | between_species_paralog: NP_989974.1 | 2 |
p13 | q11 | +/+ | ENSP00000341826 | HNRPA1 | q11 | q11 | 404.7 | 2 | 32118713 | 32123644 | -1 | 5 | 85.2% | 54.9% | 1113 | 0.01 / 0.27 = 0.04 | between_species_paralog: Q5ZME1_CHICK | 2 |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 17 (region 3 for Hsap)
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 2 -i 176666159:177804673 -f 85e4 some_geneID_to_be_selected
scoreRatio_sum=7.65 log_scoreRatio_sum=-3.63 focal_scoreRatio_sum=2.96
AlnScore=4155 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Homo_sapiens
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 272 | 2 | 176666159 | 176667689 | 1 | 2 | 71.5% | 54.8% | 720 | 0.57 / 0.57 = 1 | within_species_paralog: HOXD13 | 2 |
p3 | q2 | +/+ | ENSP00000243103 | HOXC12 | q2 | q2 | 196.8 | 2 | 176672776 | 176673731 | 1 | 2 | 98.2% | 43.7% | 840 | 0.51 / 0.51 = 1 | noComparaHits: HOXD12 | 2 |
p4 | q3 | +/+ | ENSP00000243082 | HOXC11 | q3 | q3 | 221.1 | 2 | 176680312 | 176682110 | 1 | 2 | 95.1% | 40.3% | 1128 | 0.56 / 0.65 = 0.86 | within_species_paralog: HOXD11 | 3 |
p5 | q4 | +/+ | ENSP00000307321 | HOXC10 | q4 | q4 | 288 | 2 | 176689889 | 176692202 | 1 | 2 | 93% | 50.5% | 939 | 0.59 / 0.59 = 1 | noComparaHits: HOXD10 | 2 |
p6 | q5 | +/+ | ENSP00000302836 | HOXC9 | q5 | q5 | 264 | 2 | 176695773 | 176697140 | 1 | 2 | 76.2% | 59.3% | 690 | 0.52 / 0.52 = 1 | within_species_paralog: HOXD9 | 2 |
p7 | q6 | +/+ | ENSP00000040584 | HOXC8 | q6 | q6 | 276 | 2 | 176703341 | 176704571 | 1 | 2 | 97.9% | 52.8% | 852 | 0.34 / 0.41 = 0.83 | within_species_paralog: HOXD8 | 3 |
p8 | --- | gapq | ENSP00000243108 | HOXC6 | q7 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000309336 | HOXC5 | q7 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q7 | +/+ | ENSP00000305973 | HOXC4 | q7 | q7 | 265 | 2 | 176724608 | 176725913 | 1 | 2 | 100% | 54.4% | 765 | 0.51 / 0.53 = 0.96 | within_species_paralog: HOXD4 | 3 |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gapq | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | q8 | +/+ | ENSP00000341826 | HNRPA1 | q8 | q8 | 420.7 | 2 | 177788507 | 177792270 | 1 | 4 | 70.4% | 64.1% | 1023 | 0.01 / 0.25 = 0.04 | within_species_paralog: HNRPA3 | noData |
p14 | q9 | +/+ | ENSP00000312436 | NFE2 | q9 | q9 | 172 | 2 | 177803780 | 177804673 | -1 | 1 | 69.7% | 39.3% | 894 | 0.74 / 0.77 = 0.96 | noComparaHits: NFE2L2 | 3 |
region 18 (region 2 for Mmul)
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 3 -i 99025864:100086194 -f 80e4 some_geneID_to_be_selected
scoreRatio_sum=7.97 log_scoreRatio_sum=-4.58 focal_scoreRatio_sum=2.9
AlnScore=4080 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Macaca_mulatta
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 196.1 | 3 | 99025864 | 99026965 | 1 | 2 | 37.9% | 73.8% | 378 | 0.57 / 0.69 = 0.83 | between_species_paralog: HOXA13 | 4 |
p3 | --- | gapq | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q2 | +/+ | ENSP00000243082 | HOXC11 | q2 | q2 | 276 | 3 | 99039953 | 99042320 | 1 | 2 | 79.6% | 55.7% | 777 | 0.56 / 0.56 = 1 | between_species_paralog: HOXA11 | 2 |
p5 | q3 | +/+ | ENSP00000307321 | HOXC10 | q3 | q3 | 164 | 3 | 99053133 | 99053396 | 1 | 1 | 26% | 88.8% | 264 | 0.59 / 0.76 = 0.78 | noComparaHits: HOXA10 | 3 |
p6 | q4 | +/+ | ENSP00000302836 | HOXC9 | q4 | q4 | 247 | 3 | 99059984 | 99061847 | 1 | 2 | 99.2% | 50.2% | 816 | 0.52 / 0.55 = 0.95 | between_species_paralog: HOXA9 | 2 |
p7 | q5 | +/+ | ENSP00000040584 | HOXC8 | q5 | q5 | 112 | 3 | 99070150 | 99070356 | 1 | 1 | 28.9% | 77.1% | 207 | 0.34 / 0.76 = 0.45 | noComparaHits: HOXA7 | 5 |
p8 | q6 | +/+ | ENSP00000243108 | HOXC6 | q6 | q6 | 215.9 | 3 | 99078244 | 99080281 | 1 | 2 | 91.5% | 48.7% | 702 | 0.56 / 0.56 = 1 | between_species_paralog: HOXA6 | 2 |
p9 | q7 | +/+ | ENSP00000309336 | HOXC5 | q7 | q7 | 196.2 | 3 | 99082328 | 99084069 | 1 | 2 | 97.3% | 45.9% | 756 | 0.57 / 0.57 = 1 | noComparaHits: HOXA5 | 2 |
p10 | --- | gapq | ENSP00000305973 | HOXC4 | q7 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q8 | +/+ | ENSP00000209875 | CBX5 | q8 | q8 | 248.8 | 3 | 100058972 | 100064698 | -1 | 4 | 86.4% | 62.4% | 540 | 0.37 / 0.38 = 0.97 | noComparaHits: | 2 |
p13 | q9 | +/+ | ENSP00000341826 | HNRPA1 | q9 | q9 | 418.6 | 3 | 100073805 | 100078312 | 1 | 5 | 76.1% | 66.6% | 888 | 0.01 / 0.25 = 0.04 | between_species_paralog: HNRPA2B1 | noData |
p14 | q10 | +/+ | ENSP00000312436 | NFE2 | q10 | q10 | 161 | 3 | 100085769 | 100086194 | -1 | 1 | 38.1% | 53.5% | 426 | 0.74 / 0.78 = 0.95 | noComparaHits: NFE2L3 | 4 |
region 19 (region 1 for Mdom)
retrieve target region: getEnsemblProteins.pl -h Monodelphis_domestica -l 8 -i 293235090:294158686 -f 69e4 some_geneID_to_be_selected
scoreRatio_sum=8.23 log_scoreRatio_sum=-5.48 focal_scoreRatio_sum=2.75
AlnScore=3996 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Monodelphis_domestica
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 256 | 8 | 293235090 | 293236741 | 1 | 2 | 69.7% | 55.5% | 759 | 0.57 / 0.6 = 0.95 | between_species_paralog: Q9TUC8_MONDO | 3 |
p3 | --- | gapq | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q2 | +/+ | ENSP00000243082 | HOXC11 | q2 | q2 | 281 | 8 | 293253079 | 293255750 | 1 | 2 | 70.1% | 64% | 663 | 0.56 / 0.55 = 1.02 | between_species_paralog: HOXA11 | 1 |
p5 | q3 | +/+ | ENSP00000307321 | HOXC10 | q3 | q3 | 164 | 8 | 293268681 | 293268944 | 1 | 1 | 26% | 88.8% | 264 | 0.59 / 0.76 = 0.78 | noComparaHits: HOXA10 | 2 |
p6 | q4 | +/+ | ENSP00000302836 | HOXC9 | q3 | q4 | 119 | 8 | 293276346 | 293276801 | 1 | 1 | 56.2% | 46.8% | 456 | 0.52 / 0.78 = 0.67 | between_species_paralog: HOXA9 | 5 |
p7 | q5 | +/+ | ENSP00000040584 | HOXC8 | q5 | q5 | 112 | 8 | 293289522 | 293289782 | 1 | 1 | 31% | 62.1% | 261 | 0.34 / 0.76 = 0.45 | noComparaHits: HOXA9 | 4 |
p8 | q6 | +/+ | ENSP00000243108 | HOXC6 | q6 | q6 | 221.6 | 8 | 293298050 | 293300159 | 1 | 2 | 99.6% | 49.6% | 720 | 0.56 / 0.54 = 1.04 | between_species_paralog: HOXA6 | 2 |
p9 | q7 | +/+ | ENSP00000309336 | HOXC5 | q7 | q7 | 189.3 | 8 | 293302329 | 293304216 | 1 | 2 | 97.3% | 45.4% | 753 | 0.57 / 0.59 = 0.97 | noComparaHits: HOXA5 | 1 |
p10 | q8 | +/+ | ENSP00000305973 | HOXC4 | q8 | q8 | 151 | 8 | 293316292 | 293317790 | 1 | 2 | 95.8% | 35.7% | 951 | 0.51 / 0.73 = 0.7 | between_species_paralog: HOXA4 | 3 |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q9 | +/+ | ENSP00000209875 | CBX5 | q9 | q9 | 197.2 | 8 | 294140698 | 294142657 | -1 | 3 | 93.2% | 56% | 522 | 0.37 / 0.5 = 0.74 | between_species_paralog: ENSMODG00000000572 | 2 |
p13 | q10 | +/+ | ENSP00000341826 | HNRPA1 | q10 | q10 | 402.8 | 8 | 294149509 | 294153072 | 1 | 5 | 61.6% | 75.9% | 711 | 0.01 / 0.28 = 0.04 | between_species_paralog: HNRPA2B1 | 1 |
p14 | q11 | +/+ | ENSP00000312436 | NFE2 | q11 | q11 | 114 | 8 | 294158279 | 294158686 | -1 | 1 | 36.5% | 42.6% | 408 | 0.74 / 0.85 = 0.87 | noComparaHits: | 3 |
region 20 (region 3 for Mmus)
retrieve target region: getEnsemblProteins.pl -h Mus_musculus -l 2 -i 74469431:75477744 -f 76e4 some_geneID_to_be_selected
scoreRatio_sum=7.57 log_scoreRatio_sum=-4 focal_scoreRatio_sum=2.91
AlnScore=3966 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Mus_musculus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 282 | 2 | 74469431 | 74470960 | 1 | 2 | 71.5% | 53.5% | 777 | 0.57 / 0.56 = 1.02 | between_species_paralog: Hoxd13 | 2 |
p3 | q2 | +/+ | ENSP00000243103 | HOXC12 | q2 | q2 | 172 | 2 | 74475926 | 74476888 | 1 | 1 | 100% | 37.9% | 963 | 0.51 / 0.57 = 0.89 | noComparaHits: Hoxd12 | 2 |
p4 | q3 | +/+ | ENSP00000243082 | HOXC11 | q3 | q3 | 221.6 | 2 | 74483208 | 74484971 | 1 | 2 | 82.6% | 45.7% | 894 | 0.56 / 0.64 = 0.88 | between_species_paralog: Hoxd11 | 3 |
p5 | q4 | +/+ | ENSP00000307321 | HOXC10 | q4 | q4 | 289 | 2 | 74492900 | 74495204 | 1 | 2 | 93% | 51.1% | 939 | 0.59 / 0.59 = 1 | noComparaHits: Hoxd10 | 2 |
p6 | q5 | +/+ | ENSP00000302836 | HOXC9 | q5 | q5 | 257 | 2 | 74498895 | 74500251 | 1 | 2 | 76.2% | 58.3% | 687 | 0.52 / 0.53 = 0.98 | between_species_paralog: Hoxd9 | 2 |
p7 | q6 | +/+ | ENSP00000040584 | HOXC8 | q6 | q6 | 263 | 2 | 74506387 | 74507633 | 1 | 2 | 97.9% | 51.8% | 846 | 0.34 / 0.43 = 0.79 | between_species_paralog: Hoxd8 | 3 |
p8 | --- | gapq | ENSP00000243108 | HOXC6 | q7 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000309336 | HOXC5 | q7 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q7 | +/+ | ENSP00000305973 | HOXC4 | q7 | q7 | 269 | 2 | 74528118 | 74529423 | 1 | 2 | 100% | 52.3% | 777 | 0.51 / 0.52 = 0.98 | noComparaHits: Hoxd3 | 3 |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gapq | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | q8 | +/+ | ENSP00000341826 | HNRPA1 | q8 | q8 | 340.5 | 2 | 75462302 | 75463417 | 1 | 3 | 51.9% | 75.3% | 666 | 0.01 / 0.39 = 0.03 | between_species_paralog: Hnrpa3 | noData |
p14 | q9 | +/+ | ENSP00000312436 | NFE2 | q9 | q9 | 194 | 2 | 75476821 | 75477744 | -1 | 1 | 73.2% | 40.1% | 924 | 0.74 / 0.74 = 1 | noComparaHits: Nfe2l2 | 2 |
region 21 (region 3 for Xtro)
retrieve target region: getEnsemblProteins.pl -h Xenopus_tropicalis -l scaffold_163 -i 19498:652653 -f 47e4 some_geneID_to_be_selected
scoreRatio_sum=6.78 log_scoreRatio_sum=-3.3 focal_scoreRatio_sum=2.79
AlnScore=3765 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Xenopus_tropicalis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 274 | scaffold_163 | 649613 | 652653 | -1 | 2 | 85.2% | 50.7% | 891 | 0.57 / 0.57 = 1 | between_species_paralog: HOXD13 | 3 |
p3 | --- | gapq | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q2 | +/+ | ENSP00000243082 | HOXC11 | q2 | q2 | 241 | scaffold_163 | 633884 | 635447 | -1 | 2 | 89.8% | 48.8% | 792 | 0.56 / 0.61 = 0.92 | noComparaHits: | 3 |
p5 | q3 | +/+ | ENSP00000307321 | HOXC10 | q3 | q3 | 298 | scaffold_163 | 624911 | 627823 | -1 | 2 | 93% | 50.2% | 933 | 0.59 / 0.57 = 1.04 | noComparaHits: HOXD10 | 2 |
p6 | q4 | +/+ | ENSP00000302836 | HOXC9 | q4 | q4 | 286 | scaffold_163 | 619622 | 620793 | -1 | 2 | 96.9% | 58.8% | 774 | 0.52 / 0.48 = 1.08 | ortholog_one2many: HOXD9 | 2 |
p7 | q5 | +/+ | ENSP00000040584 | HOXC8 | q5 | q5 | 256 | scaffold_163 | 608271 | 609787 | -1 | 2 | 93.8% | 56.9% | 654 | 0.34 / 0.45 = 0.76 | between_species_paralog: HOXD8 | 3 |
p8 | --- | gapq | ENSP00000243108 | HOXC6 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000309336 | HOXC5 | q6 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q6 | +/+ | ENSP00000305973 | HOXC4 | q6 | q6 | 258.4 | scaffold_163 | 582352 | 583439 | -1 | 2 | 95.1% | 50.4% | 768 | 0.51 / 0.54 = 0.94 | between_species_paralog: HOXD4 | 2 |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gapq | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | q7 | +/+ | ENSP00000341826 | HNRPA1 | q7 | q7 | 444.3 | scaffold_163 | 39999 | 43352 | -1 | 5 | 72.3% | 70.8% | 942 | 0.01 / 0.2 = 0.05 | between_species_paralog: ENSXETG00000001806 | 1 |
p14 | q8 | +/+ | ENSP00000312436 | NFE2 | q8 | q8 | 187 | scaffold_163 | 19498 | 20370 | 1 | 1 | 68.4% | 39.7% | 873 | 0.74 / 0.75 = 0.99 | noComparaHits: TEgg072h09.1 | 2 |
region 22 (region 3 for Cfam)
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 9 -i 27682151:28287891 -f 45e4 some_geneID_to_be_selected
scoreRatio_sum=7.85 log_scoreRatio_sum=-0.16 focal_scoreRatio_sum=2.63
AlnScore=3569 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Canis_familiaris
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 242 | 9 | 28285974 | 28287891 | -1 | 2 | 75.2% | 49.6% | 744 | 0.57 / 0.62 = 0.92 | between_species_paralog: 491060 | 3 |
p3 | --- | gapq | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gapq | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gapq | ENSP00000307321 | HOXC10 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | q2 | +/+ | ENSP00000302836 | HOXC9 | q2 | q2 | 239.8 | 9 | 28212650 | 28216111 | -1 | 2 | 95% | 52% | 651 | 0.52 / 0.56 = 0.93 | ortholog_one2many: 608958 | 2 |
p7 | q3 | +/+ | ENSP00000040584 | HOXC8 | q3 | q3 | 303 | 9 | 28202535 | 28204191 | -1 | 2 | 99.2% | 62.2% | 711 | 0.34 / 0.35 = 0.97 | between_species_paralog: 491059 | 2 |
--- | q4 | gapp | - | - | - | q4 | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q5 | +/+ | ENSP00000243108 | HOXC6 | q5 | q5 | 190.2 | 9 | 28185777 | 28187509 | -1 | 2 | 99.1% | 47.5% | 684 | 0.56 / 0.61 = 0.92 | between_species_paralog: 491056 | 3 |
p9 | q6 | +/+ | ENSP00000309336 | HOXC5 | q6 | q6 | 187.2 | 9 | 28181580 | 28183107 | -1 | 2 | 98.2% | 43.7% | 777 | 0.57 / 0.59 = 0.97 | noComparaHits: 491056 | 3 |
p10 | q7 | +/+ | ENSP00000305973 | HOXC4 | q7 | q7 | 294.4 | 9 | 28165652 | 28167383 | -1 | 3 | 73.9% | 64.5% | 651 | 0.51 / 0.47 = 1.09 | between_species_paralog: HOXB4 | 2 |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q8 | /+ | ENSP00000209875 | CBX5 | q8 | q8 | 260.3 | 9 | 27692222 | 27696299 | -1 | 4 | 95.3% | 65.1% | 546 | 0.37 / 0.35 = 1.06 | between_species_paralog: 491051 | 2 |
p13 | --- | gapq | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q9 | +/+ | ENSP00000312436 | NFE2 | q9 | q9 | 189 | 9 | 27682151 | 27682855 | 1 | 1 | 59.5% | 46% | 705 | 0.74 / 0.75 = 0.99 | noComparaHits: Q9XSV2_CANFA | 3 |
region 23 (region 2 for Drer)
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 3 -i 21911303:23046123 -f 85e4 some_geneID_to_be_selected
scoreRatio_sum=7.57 log_scoreRatio_sum=-0.49 focal_scoreRatio_sum=2.89
AlnScore=3547 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 291 | 3 | 23044795 | 23046123 | -1 | 2 | 97.3% | 48.3% | 891 | 0.57 / 0.54 = 1.06 | between_species_paralog: ENSDARG00000056016
; hoxb13a |
3 |
p3 | --- | gapq | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gapq | ENSP00000243082 | HOXC11 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q2 | +/+ | ENSP00000307321 | HOXC10 | q2 | q2 | 142 | 3 | 23029318 | 23029581 | -1 | 1 | 25.7% | 75% | 264 | 0.59 / 0.79 = 0.75 | noComparaHits: hoxb10a | 4 |
p6 | q3 | +/+ | ENSP00000302836 | HOXC9 | q3 | q3 | 244 | 3 | 23019703 | 23022949 | -1 | 2 | 67.7% | 66.8% | 552 | 0.52 / 0.56 = 0.93 | between_species_paralog: hoxb9a | 3 |
p7 | q4 | +/+ | ENSP00000040584 | HOXC8 | q4 | q4 | 309 | 3 | 23010723 | 23012162 | -1 | 2 | 98.8% | 62.5% | 687 | 0.34 / 0.34 = 1 | between_species_paralog: hoxb8a | 2 |
--- | q5 | gapp | - | - | - | q5 | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q6 | +/+ | ENSP00000243108 | HOXC6 | q6 | q6 | 201.4 | 3 | 22995009 | 22996746 | -1 | 2 | 96.6% | 48.1% | 681 | 0.56 / 0.58 = 0.97 | between_species_paralog: hoxb6a | 3 |
p9 | q7 | +/+ | ENSP00000309336 | HOXC5 | q7 | q7 | 128 | 3 | 22991260 | 22991502 | -1 | 1 | 35.6% | 76.5% | 243 | 0.57 / 0.72 = 0.79 | noComparaHits: hoxb5a
; hoxb3a |
3 |
p10 | q8 | +/+ | ENSP00000305973 | HOXC4 | q8 | q8 | 285 | 3 | 22976974 | 22978642 | -1 | 2 | 95.8% | 58% | 735 | 0.51 / 0.49 = 1.04 | between_species_paralog: hoxb4a | 2 |
--- | q9 | gapp | - | - | - | q9 | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q10 | +/+ | ENSP00000209875 | CBX5 | q10 | q10 | 256.9 | 3 | 21911303 | 21916008 | 1 | 4 | 95.8% | 61.7% | 531 | 0.37 / 0.36 = 1.03 | between_species_paralog: cbx1 | 2 |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | q9 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 24 (region 4 for Cfam)
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 36 -i 22929090:24017640 -f 82e4 some_geneID_to_be_selected
scoreRatio_sum=6.82 log_scoreRatio_sum=-4.61 focal_scoreRatio_sum=2.52
AlnScore=3540 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Canis_familiaris
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 124 | 36 | 22929090 | 22929323 | 1 | 1 | 23.6% | 78.2% | 234 | 0.57 / 0.8 = 0.71 | noComparaHits: | 4 |
p3 | q2 | +/+ | ENSP00000243103 | HOXC12 | q2 | q2 | 184.9 | 36 | 22934436 | 22935399 | 1 | 2 | 79.8% | 46.3% | 693 | 0.51 / 0.54 = 0.94 | noComparaHits: HOXD12 | 2 |
p4 | q3 | +/+ | ENSP00000243082 | HOXC11 | q3 | q3 | 207 | 36 | 22941988 | 22943754 | 1 | 2 | 78.9% | 43.1% | 909 | 0.56 / 0.67 = 0.84 | between_species_paralog: HOXD11 | 3 |
p5 | q4 | +/+ | ENSP00000307321 | HOXC10 | q4 | q4 | 288 | 36 | 22951692 | 22954001 | 1 | 2 | 93% | 50.5% | 939 | 0.59 / 0.59 = 1 | noComparaHits: 488415 | 2 |
p6 | q5 | +/+ | ENSP00000302836 | HOXC9 | q5 | q5 | 154 | 36 | 22958879 | 22959109 | 1 | 1 | 29.6% | 93.5% | 231 | 0.52 / 0.72 = 0.72 | noComparaHits: ENSCAFG00000023404 | 3 |
p7 | q6 | +/+ | ENSP00000040584 | HOXC8 | q6 | q6 | 245.4 | 36 | 22965937 | 22966935 | 1 | 2 | 74.4% | 63.6% | 579 | 0.34 / 0.47 = 0.72 | between_species_paralog: HOXD8 | 3 |
p8 | --- | gapq | ENSP00000243108 | HOXC6 | q6 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000309336 | HOXC5 | q7 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q7 | +/+ | ENSP00000305973 | HOXC4 | q7 | q7 | 216.2 | 36 | 22987182 | 22988275 | 1 | 2 | 53.8% | 71.3% | 411 | 0.51 / 0.61 = 0.84 | between_species_paralog: HOXD4 | 3 |
--- | q8 | gapp | - | - | - | q8 | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gapq | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | q9 | +/+ | ENSP00000341826 | HNRPA1 | q9 | q9 | 414.9 | 36 | 24003741 | 24006895 | 1 | 4 | 70.4% | 66.6% | 963 | 0.01 / 0.26 = 0.04 | between_species_paralog: 608074 | noData |
p14 | q10 | +/+ | ENSP00000312436 | NFE2 | q10 | q10 | 199 | 36 | 24016753 | 24017640 | -1 | 1 | 69.2% | 42.9% | 888 | 0.74 / 0.73 = 1.01 | noComparaHits: 478813 | 2 |
region 25 (region 4 for Hsap)
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 17 -i 43490986:44160948 -f 50e4 some_geneID_to_be_selected
scoreRatio_sum=7.74 log_scoreRatio_sum=-0.26 focal_scoreRatio_sum=2.62
AlnScore=3529 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Homo_sapiens
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 248 | 17 | 44159169 | 44160948 | -1 | 2 | 82.7% | 48.1% | 843 | 0.57 / 0.61 = 0.93 | within_species_paralog: HOXB13 | 4 |
p3 | --- | gapq | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gapq | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gapq | ENSP00000307321 | HOXC10 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | q2 | +/+ | ENSP00000302836 | HOXC9 | q2 | q2 | 239.6 | 17 | 44055273 | 44058630 | -1 | 2 | 94.6% | 52.2% | 648 | 0.52 / 0.56 = 0.93 | within_species_paralog: HOXB9 | 4 |
p7 | q3 | +/+ | ENSP00000040584 | HOXC8 | q3 | q3 | 305 | 17 | 44045578 | 44047065 | -1 | 2 | 99.6% | 62.1% | 717 | 0.34 / 0.34 = 1 | within_species_paralog: HOXB8 | 2 |
--- | q4 | gapp | - | - | - | q4 | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q5 | +/+ | ENSP00000243108 | HOXC6 | q5 | q5 | 194.6 | 17 | 44028777 | 44030511 | -1 | 2 | 97% | 48.9% | 669 | 0.56 / 0.6 = 0.93 | within_species_paralog: HOXB6 | 3 |
p9 | q6 | +/+ | ENSP00000309336 | HOXC5 | q6 | q6 | 184.9 | 17 | 44024609 | 44026043 | -1 | 2 | 97.3% | 42.6% | 756 | 0.57 / 0.6 = 0.95 | noComparaHits: HOXB5 | 3 |
p10 | q7 | +/+ | ENSP00000305973 | HOXC4 | q7 | q7 | 275 | 17 | 44009128 | 44010680 | -1 | 2 | 87.5% | 56.5% | 726 | 0.51 / 0.51 = 1 | within_species_paralog: HOXB4 | 2 |
--- | q8 | gapp | - | - | - | q8 | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q9 | /+ | ENSP00000209875 | CBX5 | q9 | q9 | 253 | 17 | 43503805 | 43509365 | -1 | 4 | 86.9% | 68.4% | 492 | 0.37 / 0.37 = 1 | within_species_paralog: CBX1 | 2 |
p13 | --- | gapq | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q10 | +/+ | ENSP00000312436 | NFE2 | q10 | q10 | 193 | 17 | 43490986 | 43491942 | 1 | 1 | 68.9% | 38.6% | 957 | 0.74 / 0.74 = 1 | noComparaHits: NFE2L1 | 2 |
region 26 (region 3 for Mmul)
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 12 -i 39734020:40850337 -f 84e4 some_geneID_to_be_selected
scoreRatio_sum=6.31 log_scoreRatio_sum=-4.04 focal_scoreRatio_sum=1.81
AlnScore=3405 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Macaca_mulatta
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 272 | 12 | 39734020 | 39735550 | 1 | 2 | 71.5% | 52.4% | 783 | 0.57 / 0.57 = 1 | between_species_paralog: HOXD13 | 2 |
p3 | q2 | +/+ | ENSP00000243103 | HOXC12 | q2 | q2 | 200.2 | 12 | 39740821 | 39741776 | 1 | 2 | 100% | 41.5% | 945 | 0.51 / 0.5 = 1.02 | noComparaHits: HOXD12 | 2 |
p4 | q3 | +/+ | ENSP00000243082 | HOXC11 | q3 | q3 | 141 | 12 | 39750165 | 39750374 | 1 | 1 | 23% | 94.3% | 210 | 0.56 / 0.77 = 0.73 | noComparaHits: | 3 |
p5 | q4 | +/+ | ENSP00000307321 | HOXC10 | q4 | q4 | 242.6 | 12 | 39758176 | 39760422 | 1 | 2 | 53.8% | 64.7% | 555 | 0.59 / 0.65 = 0.91 | noComparaHits: HOXD10 | 2 |
p6 | --- | gapq | ENSP00000302836 | HOXC9 | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q5 | +/+ | ENSP00000040584 | HOXC8 | q5 | q5 | 244.6 | 12 | 39772043 | 39772931 | 1 | 2 | 66.9% | 71.8% | 486 | 0.34 / 0.47 = 0.72 | between_species_paralog: HOXD8 | 3 |
p8 | --- | gapq | ENSP00000243108 | HOXC6 | q6 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000309336 | HOXC5 | q6 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q6 | +/+ | ENSP00000305973 | HOXC4 | q6 | q6 | 254.5 | 12 | 39793366 | 39794671 | 1 | 2 | 100% | 52.2% | 765 | 0.51 / 0.55 = 0.93 | between_species_paralog: HOXD4 | 2 |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gapq | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | q7 | +/+ | ENSP00000341826 | HNRPA1 | q7 | q7 | 416.4 | 12 | 40834822 | 40838252 | 1 | 4 | 70.4% | 67.3% | 951 | 0.01 / 0.25 = 0.04 | between_species_paralog: Q5T6S7_HUMAN | noData |
p14 | q8 | +/+ | ENSP00000312436 | NFE2 | q8 | q8 | 173 | 12 | 40849441 | 40850337 | -1 | 1 | 69.7% | 39.8% | 897 | 0.74 / 0.77 = 0.96 | noComparaHits: NFE2L2 | 3 |
region 27 (region 2 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_2643 -i 4976:46955 -f 31e3 some_geneID_to_be_selected
scoreRatio_sum=9.94 log_scoreRatio_sum=2.91 focal_scoreRatio_sum=4.95
AlnScore=3319 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | q1 | +/+ | ENSP00000302836 | HOXC9 | q1 | q1 | 409 | contig_2643 | 45173 | 46955 | -1 | 2 | 99.6% | 73.9% | 783 | 0.52 / 0.26 = 2 | noComparaHits: ENSGACG00000009396 | 1 |
p7 | q2 | +/+ | ENSP00000040584 | HOXC8 | q2 | q2 | 419 | contig_2643 | 39204 | 41140 | -1 | 2 | 88.8% | 86.3% | 657 | 0.34 / 0.1 = 3.4 | noComparaHits: ENSGACG00000009401 | 1 |
p8 | q3 | +/+ | ENSP00000243108 | HOXC6 | q3 | q3 | 365 | contig_2643 | 28322 | 29473 | -1 | 2 | 96.6% | 74.9% | 702 | 0.56 / 0.25 = 2.24 | noComparaHits: Q4VQD3_GASAC | 1 |
p9 | q4 | +/+ | ENSP00000309336 | HOXC5 | q4 | q4 | 135 | contig_2643 | 24698 | 24928 | -1 | 1 | 34.7% | 80.5% | 231 | 0.57 / 0.71 = 0.8 | noComparaHits: ENSGACG00000009416 | 1 |
p10 | q5 | +/+ | ENSP00000305973 | HOXC4 | q5 | q5 | 373 | contig_2643 | 14513 | 15813 | -1 | 2 | 100% | 69.5% | 792 | 0.51 / 0.34 = 1.5 | noComparaHits: ENSGACG00000009421 | 1 |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 28 (region 4 for Mmus)
retrieve target region: getEnsemblProteins.pl -h Mus_musculus -l 11 -i 96010539:96636276 -f 47e4 some_geneID_to_be_selected
scoreRatio_sum=7.32 log_scoreRatio_sum=-0.75 focal_scoreRatio_sum=2.52
AlnScore=3289 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Mus_musculus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 252 | 11 | 96010539 | 96012301 | 1 | 2 | 82.7% | 49.3% | 831 | 0.57 / 0.6 = 0.95 | between_species_paralog: Hoxb13 | 4 |
p3 | --- | gapq | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gapq | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gapq | ENSP00000307321 | HOXC10 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | q2 | +/+ | ENSP00000302836 | HOXC9 | q2 | q2 | 233.8 | 11 | 96087632 | 96090937 | 1 | 2 | 66.2% | 65% | 522 | 0.52 / 0.57 = 0.91 | between_species_paralog: Hoxb9 | 4 |
p7 | q3 | +/+ | ENSP00000040584 | HOXC8 | q3 | q3 | 306 | 11 | 96099053 | 96100545 | 1 | 2 | 99.6% | 62.6% | 717 | 0.34 / 0.34 = 1 | between_species_paralog: Hoxb8 | 2 |
--- | q4 | gapp | - | - | - | q4 | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q5 | +/+ | ENSP00000243108 | HOXC6 | q5 | q5 | 192.5 | 11 | 96115267 | 96117015 | 1 | 2 | 97% | 48.9% | 669 | 0.56 / 0.6 = 0.93 | between_species_paralog: Hoxb6 | 3 |
p9 | q6 | +/+ | ENSP00000309336 | HOXC5 | q6 | q6 | 128 | 11 | 96120850 | 96121188 | 1 | 1 | 49.1% | 62.6% | 339 | 0.57 / 0.72 = 0.79 | noComparaHits: Hoxb5 | 3 |
p10 | q7 | +/+ | ENSP00000305973 | HOXC4 | q7 | q7 | 274 | 11 | 96134860 | 96136373 | 1 | 2 | 87.5% | 58.6% | 717 | 0.51 / 0.51 = 1 | between_species_paralog: Hoxb4 | 2 |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q8 | /+ | ENSP00000209875 | CBX5 | q8 | q8 | 199.5 | 11 | 96616898 | 96622841 | 1 | 3 | 85.9% | 59.2% | 468 | 0.37 / 0.5 = 0.74 | between_species_paralog: Cbx1 | 5 |
p13 | --- | gapq | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q9 | +/+ | ENSP00000312436 | NFE2 | q9 | q9 | 192 | 11 | 96635326 | 96636276 | -1 | 1 | 68.9% | 38.8% | 951 | 0.74 / 0.74 = 1 | noComparaHits: Nfe2l1 | 3 |
region 29 (region 2 for Mdom)
retrieve target region: getEnsemblProteins.pl -h Monodelphis_domestica -l 4 -i 187431208:187538599 -f 81e3 some_geneID_to_be_selected
scoreRatio_sum=6.77 log_scoreRatio_sum=-0.26 focal_scoreRatio_sum=2.87
AlnScore=3258 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Monodelphis_domestica
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 273 | 4 | 187431208 | 187433161 | 1 | 2 | 86.7% | 44.8% | 999 | 0.57 / 0.57 = 1 | between_species_paralog: HOXD13 | 1 |
p3 | q2 | +/+ | ENSP00000243103 | HOXC12 | q2 | q2 | 209.6 | 4 | 187439427 | 187440514 | 1 | 2 | 100% | 43.2% | 843 | 0.51 / 0.48 = 1.06 | noComparaHits: ENSMODG00000024741
; HOXD12 |
1 |
p4 | q3 | +/+ | ENSP00000243082 | HOXC11 | q3 | q3 | 258 | 4 | 187447929 | 187449656 | 1 | 2 | 89.5% | 49.8% | 867 | 0.56 / 0.59 = 0.95 | ortholog_one2many: HOXD11 | 2 |
p5 | q4 | +/+ | ENSP00000307321 | HOXC10 | q4 | q4 | 283 | 4 | 187458276 | 187460683 | 1 | 2 | 93% | 49.5% | 939 | 0.59 / 0.6 = 0.98 | noComparaHits: HOXD10 | 1 |
p6 | q5 | +/+ | ENSP00000302836 | HOXC9 | q5 | q5 | 270 | 4 | 187464529 | 187465943 | 1 | 2 | 76.2% | 60.8% | 672 | 0.52 / 0.51 = 1.02 | ortholog_one2many: HOXD9 | 1 |
p7 | q6 | +/+ | ENSP00000040584 | HOXC8 | q6 | q6 | 257 | 4 | 187472546 | 187473901 | 1 | 2 | 97.9% | 48.3% | 903 | 0.34 / 0.45 = 0.76 | ortholog_one2many: HOXD8 | 1 |
p8 | --- | gapq | ENSP00000243108 | HOXC6 | q6,q7 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000309336 | HOXC5 | q7 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q7 | +/+ | ENSP00000305973 | HOXC4 | q7 | q7 | 274 | 4 | 187497377 | 187498595 | 1 | 2 | 85.2% | 59.7% | 648 | 0.51 / 0.51 = 1 | between_species_paralog: HOXD4 | 1 |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 30 (region 3 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l groupX -i 9794354:9976077 -f 14e4 some_geneID_to_be_selected
scoreRatio_sum=7.81 log_scoreRatio_sum=-1.34 focal_scoreRatio_sum=2.66
AlnScore=3177 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 295 | groupX | 9924933 | 9926349 | -1 | 2 | 94.8% | 52.3% | 858 | 0.57 / 0.54 = 1.06 | between_species_paralog: Q9PWC4_GASAC | 2 |
p3 | --- | gapq | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q2 | +/+ | ENSP00000243082 | HOXC11 | q2 | q2 | 259 | groupX | 9914072 | 9915684 | -1 | 2 | 88.2% | 49.3% | 849 | 0.56 / 0.59 = 0.95 | between_species_paralog: ENSGACG00000007132 | 4 |
p5 | q3 | +/+ | ENSP00000307321 | HOXC10 | q3 | q3 | 230 | groupX | 9906816 | 9908599 | -1 | 2 | 100% | 40% | 1080 | 0.59 / 0.67 = 0.88 | noComparaHits: ENSGACG00000007128 | 2 |
p6 | q4 | +/+ | ENSP00000302836 | HOXC9 | q4 | q4 | 212 | groupX | 9901359 | 9902621 | -1 | 2 | 67.3% | 59.4% | 537 | 0.52 / 0.61 = 0.85 | between_species_paralog: ENSGACG00000007123 | 3 |
p7 | --- | gapq | ENSP00000040584 | HOXC8 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q5 | +/+ | ENSP00000243108 | HOXC6 | q5 | q5 | 130 | groupX | 9896109 | 9896375 | -1 | 1 | 39.1% | 70.7% | 267 | 0.56 / 0.73 = 0.77 | noComparaHits: ENSGACG00000007112 | 2 |
p9 | q6 | +/+ | ENSP00000309336 | HOXC5 | q6 | q6 | 125 | groupX | 9889875 | 9890069 | -1 | 1 | 29.3% | 87.7% | 195 | 0.57 / 0.73 = 0.78 | noComparaHits: ENSGACG00000007108 | 3 |
p10 | q7 | +/+ | ENSP00000305973 | HOXC4 | q7 | q7 | 266 | groupX | 9880503 | 9881722 | -1 | 2 | 88.3% | 55.8% | 684 | 0.51 / 0.53 = 0.96 | between_species_paralog: ENSGACG00000007100 | 4 |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q8 | +/+ | ENSP00000209875 | CBX5 | q8 | q8 | 175.6 | groupX | 9797471 | 9798413 | 1 | 2 | 93.2% | 41.3% | 753 | 0.37 / 0.56 = 0.66 | between_species_paralog: ENSGACG00000007069 | 4 |
p13 | --- | gapq | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q9 | +/+ | ENSP00000312436 | NFE2 | q9 | q9 | 135 | groupX | 9794354 | 9794776 | 1 | 1 | 37.8% | 48.9% | 423 | 0.74 / 0.82 = 0.9 | noComparaHits: ENSGACG00000007066 | 5 |
region 31 (region 4 for Mmul)
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 16 -i 32274193:32953353 -f 51e4 some_geneID_to_be_selected
scoreRatio_sum=7.11 log_scoreRatio_sum=-1.06 focal_scoreRatio_sum=2.49
AlnScore=3166 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Macaca_mulatta
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 247 | 16 | 32951584 | 32953353 | -1 | 2 | 80.6% | 48.7% | 807 | 0.57 / 0.61 = 0.93 | between_species_paralog: HOXB13 | 3 |
p3 | --- | gapq | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gapq | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gapq | ENSP00000307321 | HOXC10 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | q2 | +/+ | ENSP00000302836 | HOXC9 | q2 | q2 | 238.8 | 16 | 32852664 | 32856017 | -1 | 2 | 94.6% | 52.2% | 648 | 0.52 / 0.57 = 0.91 | between_species_paralog: HOXB9 | 3 |
p7 | q3 | +/+ | ENSP00000040584 | HOXC8 | q3 | q3 | 303 | 16 | 32842620 | 32844111 | -1 | 2 | 99.2% | 62.2% | 711 | 0.34 / 0.35 = 0.97 | between_species_paralog: HOXB8 | 2 |
--- | q4 | gapp | - | - | - | q4 | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q5 | +/+ | ENSP00000243108 | HOXC6 | q5 | q5 | 193.6 | 16 | 32826127 | 32827850 | -1 | 2 | 97% | 48.9% | 669 | 0.56 / 0.6 = 0.93 | between_species_paralog: HOXB6 | 3 |
p9 | q6 | +/+ | ENSP00000309336 | HOXC5 | q6 | q6 | 187.5 | 16 | 32821997 | 32823429 | -1 | 2 | 98.2% | 42.5% | 810 | 0.57 / 0.59 = 0.97 | noComparaHits: HOXB5
; HOXB6 |
3 |
p10 | q7 | +/+ | ENSP00000305973 | HOXC4 | q7 | q7 | 227.1 | 16 | 32806511 | 32807977 | -1 | 2 | 77.3% | 53.8% | 642 | 0.51 / 0.59 = 0.86 | between_species_paralog: HOXB4 | 3 |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q8 | /+ | ENSP00000209875 | CBX5 | q8 | q8 | 125.2 | 16 | 32291938 | 32292898 | -1 | 2 | 51.8% | 62.5% | 288 | 0.37 / 0.68 = 0.54 | between_species_paralog: ENSMMUG00000019882 | noData |
p13 | --- | gapq | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q9 | +/+ | ENSP00000312436 | NFE2 | q9 | q9 | 193 | 16 | 32274193 | 32275149 | 1 | 1 | 68.9% | 38.6% | 957 | 0.74 / 0.74 = 1 | noComparaHits: NFE2L1 | 2 |
region 32 (region 3 for Drer)
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 9 -i 651975:1605720 -f 72e4 some_geneID_to_be_selected
scoreRatio_sum=5.88 log_scoreRatio_sum=-3.67 focal_scoreRatio_sum=2.5
AlnScore=3163 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 178.3 | 9 | 1603330 | 1605720 | -1 | 2 | 57% | 50% | 579 | 0.57 / 0.72 = 0.79 | noComparaHits: hoxd13a | 6 |
p3 | q2 | +/+ | ENSP00000243103 | HOXC12 | q2 | q2 | 201.3 | 9 | 1597990 | 1600234 | -1 | 2 | 70.9% | 48.8% | 603 | 0.51 / 0.5 = 1.02 | noComparaHits: hoxd12a | 3 |
p4 | q3 | +/+ | ENSP00000243082 | HOXC11 | q3 | q3 | 274 | 9 | 1591960 | 1593695 | -1 | 2 | 93.1% | 51.2% | 879 | 0.56 / 0.56 = 1 | ortholog_one2many: hoxd11a | 3 |
p5 | q4 | +/+ | ENSP00000307321 | HOXC10 | q4 | q4 | 277 | 9 | 1583877 | 1585503 | -1 | 2 | 91.8% | 47.2% | 912 | 0.59 / 0.6 = 0.98 | noComparaHits: hoxd10a | 1 |
p6 | q5 | +/+ | ENSP00000302836 | HOXC9 | q5 | q5 | 280 | 9 | 1580192 | 1581290 | -1 | 2 | 99.2% | 53% | 783 | 0.52 / 0.49 = 1.06 | between_species_paralog: hoxd9a | 2 |
p7 | --- | gapq | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000243108 | HOXC6 | q6 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000309336 | HOXC5 | q6 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q6 | +/+ | ENSP00000305973 | HOXC4 | q6 | q6 | 272 | 9 | 1565334 | 1566370 | -1 | 2 | 85.2% | 60.3% | 648 | 0.51 / 0.51 = 1 | between_species_paralog: hoxd4a | 3 |
--- | q7 | gapp | - | - | - | q7 | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gapq | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | q8 | /+ | ENSP00000341826 | HNRPA1 | q8 | q8 | 377.9 | 9 | 651975 | 660373 | 1 | 4 | 58.9% | 78.3% | 648 | 0.01 / 0.32 = 0.03 | ortholog_one2many: ENSDARG00000059351 | 2 |
p14 | --- | gape | ENSP00000312436 | NFE2 | q7 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 33 (region 2 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 7 -i 16921183:17445827 -f 39e4 some_geneID_to_be_selected
scoreRatio_sum=6.37 log_scoreRatio_sum=-5.19 focal_scoreRatio_sum=2.3
AlnScore=3124 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 125 | 7 | 17438767 | 17439000 | -1 | 1 | 23.6% | 79.5% | 234 | 0.57 / 0.8 = 0.71 | between_species_paralog: HXD13_CHICK | 4 |
p3 | q2 | +/+ | ENSP00000243103 | HOXC12 | q2 | q2 | 201.4 | 7 | 17431970 | 17433038 | -1 | 2 | 68.4% | 52% | 570 | 0.51 / 0.5 = 1.02 | noComparaHits: ENSGALG00000011075
; HXD12_CHICK |
2 |
p4 | q3 | +/+ | ENSP00000243082 | HOXC11 | q3 | q3 | 145 | 7 | 17425091 | 17425309 | -1 | 1 | 24% | 93.2% | 219 | 0.56 / 0.77 = 0.73 | between_species_paralog: NP_989951.1 | 3 |
p5 | q4 | +/+ | ENSP00000307321 | HOXC10 | q4 | q4 | 119 | 7 | 17416029 | 17416688 | -1 | 1 | 66.1% | 33.3% | 660 | 0.59 / 0.83 = 0.71 | noComparaHits: NP_997060.1 | 7 |
p6 | q5 | +/+ | ENSP00000302836 | HOXC9 | q5 | q5 | 126 | 7 | 17409077 | 17409745 | -1 | 1 | 69.2% | 38.5% | 669 | 0.52 / 0.77 = 0.68 | noComparaHits: NP_997060.1 | 5 |
p7 | q6 | +/+ | ENSP00000040584 | HOXC8 | q6 | q6 | 245.6 | 7 | 17402523 | 17404435 | -1 | 2 | 68.2% | 69% | 501 | 0.34 / 0.47 = 0.72 | noComparaHits: NP_997060.1 | 3 |
p8 | --- | gapq | ENSP00000243108 | HOXC6 | q7 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000309336 | HOXC5 | q7 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q7 | +/+ | ENSP00000305973 | HOXC4 | q7 | q7 | 169 | 7 | 17386807 | 17387169 | -1 | 1 | 49.2% | 65.4% | 363 | 0.51 / 0.7 = 0.73 | between_species_paralog: HXD4_CHICK | 1 |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gapq | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | q8 | +/+ | ENSP00000341826 | HNRPA1 | q8 | q8 | 410.2 | 7 | 16932257 | 16936305 | -1 | 4 | 69.4% | 67.7% | 918 | 0.01 / 0.27 = 0.04 | ortholog_one2many: ENSGALG00000009250 | 1 |
p14 | q9 | +/+ | ENSP00000312436 | NFE2 | q9 | q9 | 206 | 7 | 16921183 | 16922067 | 1 | 1 | 69.7% | 42.5% | 885 | 0.74 / 0.72 = 1.03 | noComparaHits: ENSGALG00000023431
; NP_990448.1 |
1 |
region 34 (region 4 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_5303 -i 239842:370364 -f 98e3 some_geneID_to_be_selected
scoreRatio_sum=5.88 log_scoreRatio_sum=-3.65 focal_scoreRatio_sum=2.29
AlnScore=3113 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000243103 | HOXC12 | q1 | q1 | 189.4 | contig_5303 | 239842 | 241010 | 1 | 2 | 56% | 53.2% | 510 | 0.51 / 0.53 = 0.96 | noComparaHits: ENSGACG00000004574 | 3 |
p4 | q2 | +/+ | ENSP00000243082 | HOXC11 | q2 | q2 | 285 | contig_5303 | 245532 | 246909 | 1 | 2 | 78% | 61.4% | 708 | 0.56 / 0.54 = 1.04 | noComparaHits: ENSGACG00000004569 | 2 |
p5 | q3 | +/+ | ENSP00000307321 | HOXC10 | q3 | q3 | 273 | contig_5303 | 250389 | 252028 | 1 | 2 | 89.8% | 47.8% | 912 | 0.59 / 0.61 = 0.97 | noComparaHits: ENSGACG00000004564 | 1 |
p6 | q4 | +/+ | ENSP00000302836 | HOXC9 | q4 | q4 | 236 | contig_5303 | 254144 | 255336 | 1 | 2 | 86.5% | 53.4% | 702 | 0.52 / 0.57 = 0.91 | noComparaHits: Q4VQD4_GASAC | 2 |
p7 | --- | gapq | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000243108 | HOXC6 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000309336 | HOXC5 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q5 | +/+ | ENSP00000305973 | HOXC4 | q5 | q5 | 268 | contig_5303 | 266163 | 267202 | 1 | 2 | 85.6% | 56.3% | 705 | 0.51 / 0.52 = 0.98 | noComparaHits: ENSGACG00000004551 | 2 |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gapq | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | q6 | +/+ | ENSP00000341826 | HNRPA1 | q6 | q6 | 381.3 | contig_5303 | 363107 | 365446 | 1 | 4 | 61% | 68.1% | 825 | 0.01 / 0.32 = 0.03 | noComparaHits: ENSGACG00000004477 | 1 |
p14 | q7 | +/+ | ENSP00000312436 | NFE2 | q7 | q7 | 189 | contig_5303 | 369582 | 370364 | -1 | 1 | 61.4% | 42.3% | 783 | 0.74 / 0.75 = 0.99 | noComparaHits: ENSGACG00000004470 | 2 |
region 35 (region 5 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l groupXVI -i 9699116:9829638 -f 98e3 some_geneID_to_be_selected
scoreRatio_sum=5.88 log_scoreRatio_sum=-3.65 focal_scoreRatio_sum=2.29
AlnScore=3113 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000243103 | HOXC12 | q1 | q1 | 189.4 | groupXVI | 9828470 | 9829638 | -1 | 2 | 56% | 53.2% | 510 | 0.51 / 0.53 = 0.96 | noComparaHits: ENSGACG00000004574 | 3 |
p4 | q2 | +/+ | ENSP00000243082 | HOXC11 | q2 | q2 | 285 | groupXVI | 9822571 | 9823948 | -1 | 2 | 78% | 61.4% | 708 | 0.56 / 0.54 = 1.04 | ortholog_one2one: ENSGACG00000004569 | 2 |
p5 | q3 | +/+ | ENSP00000307321 | HOXC10 | q3 | q3 | 273 | groupXVI | 9817452 | 9819091 | -1 | 2 | 89.8% | 47.8% | 912 | 0.59 / 0.61 = 0.97 | noComparaHits: ENSGACG00000004564 | 1 |
p6 | q4 | +/+ | ENSP00000302836 | HOXC9 | q4 | q4 | 236 | groupXVI | 9814144 | 9815336 | -1 | 2 | 86.5% | 53.4% | 702 | 0.52 / 0.57 = 0.91 | between_species_paralog: Q4VQD4_GASAC | 2 |
p7 | --- | gapq | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000243108 | HOXC6 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000309336 | HOXC5 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q5 | +/+ | ENSP00000305973 | HOXC4 | q5 | q5 | 268 | groupXVI | 9802278 | 9803317 | -1 | 2 | 85.6% | 56.3% | 705 | 0.51 / 0.52 = 0.98 | between_species_paralog: ENSGACG00000004551 | 2 |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gapq | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | q6 | +/+ | ENSP00000341826 | HNRPA1 | q6 | q6 | 381.3 | groupXVI | 9704034 | 9706373 | -1 | 4 | 61% | 68.1% | 825 | 0.01 / 0.32 = 0.03 | ortholog_one2many: ENSGACG00000004477 | 2 |
p14 | q7 | +/+ | ENSP00000312436 | NFE2 | q7 | q7 | 189 | groupXVI | 9699116 | 9699898 | 1 | 1 | 61.4% | 42.3% | 783 | 0.74 / 0.75 = 0.99 | noComparaHits: ENSGACG00000004470 | 2 |
region 36 (region 4 for Xtro)
retrieve target region: getEnsemblProteins.pl -h Xenopus_tropicalis -l scaffold_334 -i 198979:589462 -f 29e4 some_geneID_to_be_selected
scoreRatio_sum=6.66 log_scoreRatio_sum=-0.36 focal_scoreRatio_sum=2.31
AlnScore=3054 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Xenopus_tropicalis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | q1 | +/+ | ENSP00000302836 | HOXC9 | q1 | q1 | 209.2 | scaffold_334 | 584781 | 589462 | -1 | 2 | 90.8% | 48% | 621 | 0.52 / 0.62 = 0.84 | between_species_paralog: HOXB9 | 4 |
--- | q2 | gapp | - | - | - | q2 | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q3 | +/+ | ENSP00000040584 | HOXC8 | q3 | q3 | 294 | scaffold_334 | 572885 | 573865 | -1 | 2 | 99.6% | 58.8% | 762 | 0.34 / 0.37 = 0.92 | noComparaHits: ENSXETG00000021993 | 2 |
--- | q4 | gapp | - | - | - | q4 | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q5 | +/+ | ENSP00000243108 | HOXC6 | q5 | q5 | 198.8 | scaffold_334 | 550361 | 552753 | -1 | 2 | 96.6% | 48.7% | 669 | 0.56 / 0.59 = 0.95 | noComparaHits: ENSXETG00000021987 | 3 |
p9 | q6 | +/+ | ENSP00000309336 | HOXC5 | q6 | q6 | 191.5 | scaffold_334 | 546814 | 548144 | -1 | 2 | 98.2% | 45.3% | 729 | 0.57 / 0.58 = 0.98 | noComparaHits: HOXB5 | 2 |
p10 | q7 | +/+ | ENSP00000305973 | HOXC4 | q7 | q7 | 247 | scaffold_334 | 533036 | 534165 | -1 | 2 | 86.4% | 56.4% | 660 | 0.51 / 0.56 = 0.91 | between_species_paralog: hoxb4 | 3 |
--- | q8 | gapp | - | - | - | q8 | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q9 | /+ | ENSP00000209875 | CBX5 | q9 | q9 | 258.1 | scaffold_334 | 206553 | 209823 | -1 | 4 | 97.9% | 62.8% | 555 | 0.37 / 0.35 = 1.06 | between_species_paralog: cbx1 | 2 |
p13 | --- | gapq | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q10 | +/+ | ENSP00000312436 | NFE2 | q10 | q10 | 197 | scaffold_334 | 198979 | 199926 | 1 | 1 | 71.3% | 38.3% | 948 | 0.74 / 0.74 = 1 | noComparaHits: NFE2L1 | 1 |
region 37 (region 2 for Olat)
retrieve target region: getEnsemblProteins.pl -h Oryzias_latipes -l 21 -i 24601819:24760609 -f 12e4 some_geneID_to_be_selected
scoreRatio_sum=5.84 log_scoreRatio_sum=-3.7 focal_scoreRatio_sum=2.36
AlnScore=3015 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Oryzias_latipes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000243103 | HOXC12 | q1 | q1 | 192.4 | 21 | 24601819 | 24602905 | 1 | 2 | 69.5% | 53% | 588 | 0.51 / 0.52 = 0.98 | noComparaHits: Q3V5Z4_ORYLA | 2 |
p4 | q2 | +/+ | ENSP00000243082 | HOXC11 | q2 | q2 | 221.2 | 21 | 24606881 | 24608287 | 1 | 2 | 86.2% | 47.5% | 816 | 0.56 / 0.65 = 0.86 | ortholog_one2one: Q3V5Z5_ORYLA | 4 |
p5 | q3 | +/+ | ENSP00000307321 | HOXC10 | q3 | q3 | 264 | 21 | 24611697 | 24613192 | 1 | 2 | 93.6% | 46% | 972 | 0.59 / 0.62 = 0.95 | noComparaHits: Q9PVQ4_ORYLA | 1 |
p6 | q4 | +/+ | ENSP00000302836 | HOXC9 | q4 | q4 | 273 | 21 | 24614922 | 24616108 | 1 | 2 | 99.6% | 55.4% | 789 | 0.52 / 0.5 = 1.04 | between_species_paralog: HXD9_ORYLA | 2 |
p7 | --- | gapq | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000243108 | HOXC6 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000309336 | HOXC5 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q5 | +/+ | ENSP00000305973 | HOXC4 | q5 | q5 | 270 | 21 | 24626722 | 24627754 | 1 | 2 | 87.1% | 58.4% | 660 | 0.51 / 0.52 = 0.98 | between_species_paralog: Q3V5Z8_ORYLA | 4 |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gapq | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | q6 | +/+ | ENSP00000341826 | HNRPA1 | q6 | q6 | 341 | 21 | 24751175 | 24752863 | 1 | 3 | 55.1% | 67.8% | 735 | 0.01 / 0.39 = 0.03 | ortholog_one2many: ENSORLG00000017561 | 2 |
p14 | q7 | +/+ | ENSP00000312436 | NFE2 | q7 | q7 | 196 | 21 | 24759587 | 24760609 | -1 | 1 | 87.7% | 39% | 1023 | 0.74 / 0.74 = 1 | noComparaHits: ENSORLG00000017568 | 1 |
region 38 (region 2 for Trub)
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_100 -i 260907:372790 -f 84e3 some_geneID_to_be_selected
scoreRatio_sum=5.92 log_scoreRatio_sum=-4 focal_scoreRatio_sum=2.37
AlnScore=3004 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Takifugu_rubripes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000243103 | HOXC12 | q1 | q1 | 186.8 | scaffold_100 | 371715 | 372790 | -1 | 2 | 73% | 50.5% | 612 | 0.51 / 0.53 = 0.96 | noComparaHits: NEWSINFRUG00000120943 | 2 |
p4 | q2 | +/+ | ENSP00000243082 | HOXC11 | q2 | q2 | 267 | scaffold_100 | 366034 | 367360 | -1 | 2 | 66.8% | 64.3% | 615 | 0.56 / 0.57 = 0.98 | ortholog_one2one: NEWSINFRUG00000162044 | 3 |
p5 | q3 | +/+ | ENSP00000307321 | HOXC10 | q3 | q3 | 263 | scaffold_100 | 361352 | 362807 | -1 | 2 | 92.7% | 44.7% | 927 | 0.59 / 0.62 = 0.95 | noComparaHits: NEWSINFRUG00000124778 | 1 |
p6 | q4 | +/+ | ENSP00000302836 | HOXC9 | q4 | q4 | 267 | scaffold_100 | 358383 | 359535 | -1 | 2 | 99.2% | 54% | 804 | 0.52 / 0.51 = 1.02 | between_species_paralog: NEWSINFRUG00000124776 | 2 |
p7 | --- | gapq | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000243108 | HOXC6 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000309336 | HOXC5 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q5 | +/+ | ENSP00000305973 | HOXC4 | q5 | q5 | 276 | scaffold_100 | 348417 | 349464 | -1 | 2 | 92% | 55.8% | 696 | 0.51 / 0.51 = 1 | between_species_paralog: NEWSINFRUG00000124775 | 2 |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gapq | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | q6 | +/+ | ENSP00000341826 | HNRPA1 | q6 | q6 | 308.8 | scaffold_100 | 266715 | 267563 | -1 | 3 | 51.3% | 67.7% | 675 | 0.01 / 0.45 = 0.02 | ortholog_one2many: NEWSINFRUG00000160665 | 2 |
p14 | q7 | +/+ | ENSP00000312436 | NFE2 | q7 | q7 | 187 | scaffold_100 | 260907 | 261788 | 1 | 1 | 72.9% | 39.6% | 882 | 0.74 / 0.75 = 0.99 | noComparaHits: NEWSINFRUG00000124769 | 2 |
region 39 (region 3 for Olat)
retrieve target region: getEnsemblProteins.pl -h Oryzias_latipes -l 11 -i 10386271:10632363 -f 18e4 some_geneID_to_be_selected
scoreRatio_sum=8.15 log_scoreRatio_sum=-1.02 focal_scoreRatio_sum=2.66
AlnScore=2979 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Oryzias_latipes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000262059 | CALCOCO1 | q1 | q1 | 119 | 11 | 10627464 | 10632363 | 1 | 2 | 20.3% | 42.1% | 420 | 0.94 / 0.91 = 1.03 | between_species_paralog: ENSORLG00000005098 | 3 |
p2 | q2 | +/+ | ENSP00000243056 | HOXC13 | q2 | q2 | 298 | 11 | 10561902 | 10563229 | -1 | 2 | 93.9% | 52.7% | 846 | 0.57 / 0.53 = 1.08 | between_species_paralog: Q3V628_ORYLA | 2 |
p3 | --- | gapq | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q3 | +/+ | ENSP00000243082 | HOXC11 | q3 | q3 | 266 | 11 | 10551755 | 10553419 | -1 | 2 | 89.1% | 48.6% | 873 | 0.56 / 0.57 = 0.98 | between_species_paralog: Q3V629_ORYLA | 2 |
p5 | q4 | +/+ | ENSP00000307321 | HOXC10 | q4 | q4 | 228.6 | 11 | 10545005 | 10546852 | -1 | 2 | 98.5% | 40.4% | 1017 | 0.59 / 0.67 = 0.88 | noComparaHits: Q3V630_ORYLA | 2 |
p6 | q5 | +/+ | ENSP00000302836 | HOXC9 | q5 | q5 | 239.8 | 11 | 10539576 | 10540702 | -1 | 2 | 99.6% | 48.4% | 807 | 0.52 / 0.56 = 0.93 | noComparaHits: Q9PTV6_ORYLA | 3 |
p7 | --- | gapq | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000243108 | HOXC6 | q6 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | q6 | +/+ | ENSP00000309336 | HOXC5 | q6 | q6 | 125 | 11 | 10525392 | 10525586 | -1 | 1 | 29.3% | 87.7% | 195 | 0.57 / 0.73 = 0.78 | noComparaHits: Q9PTV6_ORYLA | 3 |
p10 | q7 | +/+ | ENSP00000305973 | HOXC4 | q7 | q7 | 274 | 11 | 10516217 | 10517399 | -1 | 2 | 88.3% | 51.9% | 756 | 0.51 / 0.51 = 1 | noComparaHits: Q9PTV6_ORYLA | 2 |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q8 | +/+ | ENSP00000209875 | CBX5 | q8 | q8 | 137.8 | 11 | 10390163 | 10391324 | 1 | 2 | 73.3% | 47.4% | 492 | 0.37 / 0.65 = 0.57 | between_species_paralog: ENSORLG00000004972 | 4 |
p13 | --- | gapq | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q9 | +/+ | ENSP00000312436 | NFE2 | q9 | q9 | 135 | 11 | 10386271 | 10386681 | 1 | 1 | 36.7% | 50.4% | 411 | 0.74 / 0.82 = 0.9 | noComparaHits: ENSORLG00000004962 | 4 |
region 40 (region 3 for Trub)
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_12 -i 2262517:2382351 -f 90e3 some_geneID_to_be_selected
scoreRatio_sum=7.12 log_scoreRatio_sum=-0.98 focal_scoreRatio_sum=2.47
AlnScore=2951 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Takifugu_rubripes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 299 | scaffold_12 | 2381071 | 2382351 | -1 | 2 | 93.9% | 53% | 855 | 0.57 / 0.53 = 1.08 | between_species_paralog: NEWSINFRUG00000149643 | 2 |
p3 | --- | gapq | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q2 | +/+ | ENSP00000243082 | HOXC11 | q2 | q2 | 250 | scaffold_12 | 2371829 | 2373453 | -1 | 2 | 87.8% | 47.2% | 840 | 0.56 / 0.6 = 0.93 | between_species_paralog: NEWSINFRUG00000157392 | 4 |
p5 | q3 | +/+ | ENSP00000307321 | HOXC10 | q3 | q3 | 224.8 | scaffold_12 | 2365048 | 2366679 | -1 | 2 | 94.2% | 40.2% | 1002 | 0.59 / 0.68 = 0.87 | noComparaHits: NEWSINFRUG00000149640 | 2 |
p6 | q4 | +/+ | ENSP00000302836 | HOXC9 | q4 | q4 | 242.4 | scaffold_12 | 2360018 | 2361166 | -1 | 2 | 99.2% | 49.3% | 801 | 0.52 / 0.56 = 0.93 | between_species_paralog: HXA9_FUGRU | 3 |
p7 | --- | gapq | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000243108 | HOXC6 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | q5 | +/+ | ENSP00000309336 | HOXC5 | q5 | q5 | 125 | scaffold_12 | 2350063 | 2350257 | -1 | 1 | 29.3% | 87.7% | 195 | 0.57 / 0.73 = 0.78 | noComparaHits: | 3 |
p10 | q6 | +/+ | ENSP00000305973 | HOXC4 | q6 | q6 | 257 | scaffold_12 | 2341353 | 2342542 | -1 | 2 | 87.9% | 54% | 675 | 0.51 / 0.54 = 0.94 | between_species_paralog: NEWSINFRUG00000149629 | 4 |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q7 | +/+ | ENSP00000209875 | CBX5 | q7 | q7 | 182.2 | scaffold_12 | 2266887 | 2268097 | 1 | 2 | 94.2% | 43.1% | 717 | 0.37 / 0.54 = 0.69 | between_species_paralog: NEWSINFRUG00000149621 | 4 |
p13 | --- | gapq | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q8 | +/+ | ENSP00000312436 | NFE2 | q8 | q8 | 135 | scaffold_12 | 2262517 | 2263137 | 1 | 1 | 56.8% | 39.1% | 621 | 0.74 / 0.82 = 0.9 | noComparaHits: NEWSINFRUG00000149618 | 5 |
region 41 (region 2 for Tnig)
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l 21 -i 1946347:3104249 -f 87e4 some_geneID_to_be_selected
scoreRatio_sum=7.13 log_scoreRatio_sum=-1.01 focal_scoreRatio_sum=2.5
AlnScore=2919 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Tetraodon_nigroviridis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 304 | 21 | 2986877 | 2988118 | 1 | 2 | 97.9% | 49.2% | 996 | 0.57 / 0.52 = 1.1 | between_species_paralog: HOXA13
; GSTENG00017476001 |
2 |
p3 | --- | gapq | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q2 | +/+ | ENSP00000243082 | HOXC11 | q2 | q2 | 260 | 21 | 2999958 | 3001420 | 1 | 2 | 93.4% | 43.6% | 981 | 0.56 / 0.58 = 0.97 | between_species_paralog: HOXA11 | 3 |
p5 | q3 | +/+ | ENSP00000307321 | HOXC10 | q3 | q3 | 229.2 | 21 | 3006928 | 3008450 | 1 | 2 | 93.3% | 40.7% | 984 | 0.59 / 0.67 = 0.88 | noComparaHits: GSTENG00017477001
; HOXA10 |
3 |
p6 | q4 | +/+ | ENSP00000302836 | HOXC9 | q4 | q4 | 245 | 21 | 3012226 | 3013375 | 1 | 2 | 99.2% | 47% | 840 | 0.52 / 0.55 = 0.95 | between_species_paralog: HOXA9
; GSTENG00017478001 |
2 |
p7 | --- | gapq | ENSP00000040584 | HOXC8 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000243108 | HOXC6 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | q5 | +/+ | ENSP00000309336 | HOXC5 | q5 | q5 | 125 | 21 | 3022383 | 3022577 | 1 | 1 | 29.3% | 87.7% | 195 | 0.57 / 0.73 = 0.78 | noComparaHits: GSTENG00017481001
; HOXA5 |
3 |
p10 | q6 | +/+ | ENSP00000305973 | HOXC4 | q6 | q6 | 258 | 21 | 3029847 | 3031009 | 1 | 2 | 84.8% | 52% | 714 | 0.51 / 0.54 = 0.94 | between_species_paralog: HOXA4 | 4 |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q7 | +/+ | ENSP00000209875 | CBX5 | q7 | q7 | 154.8 | 21 | 3100643 | 3101312 | -1 | 3 | 62.3% | 56.9% | 369 | 0.37 / 0.61 = 0.61 | noComparaHits: | 2 |
p13 | --- | gapq | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q8 | +/+ | ENSP00000312436 | NFE2 | q8 | q8 | 135 | 21 | 3103827 | 3104249 | -1 | 1 | 37.8% | 48.2% | 423 | 0.74 / 0.82 = 0.9 | noComparaHits: GSTENG00017488001 | 5 |
region 42 (region 2 for Btau)
retrieve target region: getEnsemblProteins.pl -h Bos_taurus -l 2 -i 16934945:17074109 -f 10e4 some_geneID_to_be_selected
scoreRatio_sum=5.84 log_scoreRatio_sum=-0.15 focal_scoreRatio_sum=2.58
AlnScore=2844 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Bos_taurus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 271 | 2 | 17072594 | 17074109 | -1 | 2 | 74.8% | 54.8% | 726 | 0.57 / 0.57 = 1 | between_species_paralog: HOXD13 | 2 |
p3 | q2 | +/+ | ENSP00000243103 | HOXC12 | q2 | q2 | 191.2 | 2 | 17066540 | 17067497 | -1 | 2 | 100% | 41.6% | 903 | 0.51 / 0.52 = 0.98 | noComparaHits: HOXD12 | 2 |
p4 | --- | gapq | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q3 | +/+ | ENSP00000307321 | HOXC10 | q3 | q3 | 290 | 2 | 17003673 | 17005967 | -1 | 2 | 93% | 47.8% | 1011 | 0.59 / 0.59 = 1 | noComparaHits: HOXD10 | 2 |
p6 | q4 | +/+ | ENSP00000302836 | HOXC9 | q4 | q4 | 257 | 2 | 16998550 | 16999927 | -1 | 2 | 76.5% | 57.3% | 699 | 0.52 / 0.53 = 0.98 | between_species_paralog: HOXD9 | 2 |
p7 | q5 | +/+ | ENSP00000040584 | HOXC8 | q5 | q5 | 295 | 2 | 16991120 | 16992329 | -1 | 2 | 97.9% | 58.2% | 813 | 0.34 / 0.37 = 0.92 | between_species_paralog: HOXD8 | 2 |
p8 | --- | gapq | ENSP00000243108 | HOXC6 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000309336 | HOXC5 | q6 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q6 | +/+ | ENSP00000305973 | HOXC4 | q6 | q6 | 261 | 2 | 16969554 | 16970762 | -1 | 2 | 83.7% | 60.4% | 669 | 0.51 / 0.53 = 0.96 | between_species_paralog: HOXD4 | 2 |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 43 (region 3 for Tnig)
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l 2 -i 10999363:11117989 -f 89e3 some_geneID_to_be_selected
scoreRatio_sum=5.73 log_scoreRatio_sum=-4.2 focal_scoreRatio_sum=2.24
AlnScore=2825 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Tetraodon_nigroviridis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000243103 | HOXC12 | q1 | q1 | 183.5 | 2 | 11110368 | 11111376 | -1 | 2 | 55% | 56.8% | 504 | 0.51 / 0.54 = 0.94 | noComparaHits: GSTENG00031459001
; HOXD12 ; GSTENG00031460001 |
2 |
p4 | q2 | +/+ | ENSP00000243082 | HOXC11 | q2 | q2 | 265 | 2 | 11104976 | 11106382 | -1 | 2 | 87.8% | 54.5% | 804 | 0.56 / 0.58 = 0.97 | ortholog_one2one: HOXD11 | 2 |
p5 | q3 | +/+ | ENSP00000307321 | HOXC10 | q3 | q3 | 251.6 | 2 | 11100577 | 11101981 | -1 | 2 | 92.1% | 44.3% | 912 | 0.59 / 0.64 = 0.92 | noComparaHits: GSTENG00031461001
; HOXD10 |
1 |
p6 | q4 | +/+ | ENSP00000302836 | HOXC9 | q4 | q4 | 234.3 | 2 | 11097817 | 11098947 | -1 | 2 | 76.5% | 57% | 609 | 0.52 / 0.57 = 0.91 | between_species_paralog: GSTENG00031462001 | 3 |
p7 | --- | gapq | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000243108 | HOXC6 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000309336 | HOXC5 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q5 | +/+ | ENSP00000305973 | HOXC4 | q5 | q5 | 274.7 | 2 | 11087920 | 11088977 | -1 | 3 | 92% | 57.1% | 702 | 0.51 / 0.51 = 1 | between_species_paralog: GSTENG00031463001
; HOXD4 |
2 |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gapq | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | q6 | +/+ | ENSP00000341826 | HNRPA1 | q6 | q6 | 262.9 | 2 | 11004173 | 11004881 | -1 | 3 | 47.6% | 62.5% | 609 | 0.01 / 0.53 = 0.02 | ortholog_one2many: GSTENG00031467001 | 3 |
p14 | q7 | +/+ | ENSP00000312436 | NFE2 | q7 | q7 | 181 | 2 | 10999363 | 11000139 | 1 | 1 | 61.4% | 42.3% | 777 | 0.74 / 0.76 = 0.97 | noComparaHits: GSTENG00031468001 | 2 |
region 44 (region 3 for Mdom)
retrieve target region: getEnsemblProteins.pl -h Monodelphis_domestica -l 2 -i 200454569:201365664 -f 68e4 some_geneID_to_be_selected
scoreRatio_sum=6.74 log_scoreRatio_sum=-1.58 focal_scoreRatio_sum=2.23
AlnScore=2816 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Monodelphis_domestica
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 261 | 2 | 201363772 | 201365664 | -1 | 2 | 78.2% | 52.5% | 777 | 0.57 / 0.59 = 0.97 | between_species_paralog: HOXB13 | 2 |
p3 | --- | gapq | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gapq | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gapq | ENSP00000307321 | HOXC10 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | q2 | +/+ | ENSP00000302836 | HOXC9 | q2 | q2 | 233.8 | 2 | 201204831 | 201208661 | -1 | 2 | 71.2% | 61.6% | 561 | 0.52 / 0.57 = 0.91 | between_species_paralog: HOXB9 | 2 |
p7 | q3 | +/+ | ENSP00000040584 | HOXC8 | q3,q4 | q3 | 114 | 2 | 201188155 | 201188382 | -1 | 1 | 31.8% | 70.1% | 228 | 0.34 / 0.75 = 0.45 | noComparaHits: HOXB7 | 3 |
p8 | q4 | +/+ | ENSP00000243108 | HOXC6 | q4 | q4 | 187.2 | 2 | 201175607 | 201177388 | -1 | 2 | 87.2% | 45.2% | 684 | 0.56 / 0.61 = 0.92 | between_species_paralog: HOXB6 | 3 |
p9 | q5 | +/+ | ENSP00000309336 | HOXC5 | q5 | q5 | 126 | 2 | 201170761 | 201170955 | -1 | 1 | 29.3% | 89.2% | 195 | 0.57 / 0.73 = 0.78 | noComparaHits: HOXB5 | 2 |
p10 | q6 | +/+ | ENSP00000305973 | HOXC4 | q6 | q6 | 171 | 2 | 201153436 | 201154083 | -1 | 1 | 72.3% | 48.4% | 648 | 0.51 / 0.69 = 0.74 | ortholog_one2many: HOXB4 | 2 |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q7 | /+ | ENSP00000209875 | CBX5 | q7 | q7 | 246.5 | 2 | 200463844 | 200466752 | -1 | 4 | 88% | 62.8% | 513 | 0.37 / 0.38 = 0.97 | between_species_paralog: ENSMODG00000012368 | 1 |
p13 | --- | gapq | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q8 | +/+ | ENSP00000312436 | NFE2 | q8 | q8 | 195 | 2 | 200454569 | 200455504 | 1 | 1 | 68.9% | 40.3% | 936 | 0.74 / 0.74 = 1 | noComparaHits: NFE2L1 | 2 |
region 45 (region 4 for Trub)
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_41 -i 501809:744758 -f 18e4 some_geneID_to_be_selected
scoreRatio_sum=6.46 log_scoreRatio_sum=-1.87 focal_scoreRatio_sum=2.04
AlnScore=2699 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Takifugu_rubripes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 268 | scaffold_41 | 501809 | 503541 | 1 | 2 | 97.3% | 46.2% | 942 | 0.57 / 0.58 = 0.98 | between_species_paralog: NEWSINFRUG00000163355 | 4 |
p3 | --- | gapq | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gapq | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gapq | ENSP00000307321 | HOXC10 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | q2 | +/+ | ENSP00000302836 | HOXC9 | q2 | q2 | 141 | scaffold_41 | 540952 | 541188 | 1 | 1 | 30% | 84.8% | 237 | 0.52 / 0.74 = 0.7 | noComparaHits: NEWSINFRUG00000160069 | 4 |
p7 | q3 | +/+ | ENSP00000040584 | HOXC8 | q3 | q3 | 154 | scaffold_41 | 550793 | 551221 | 1 | 1 | 59.5% | 52.7% | 429 | 0.34 / 0.67 = 0.51 | between_species_paralog: NEWSINFRUG00000136620 | 2 |
--- | q4 | gapp | - | - | - | q4 | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q5 | +/+ | ENSP00000243108 | HOXC6 | q5 | q5 | 184.6 | scaffold_41 | 578118 | 580641 | 1 | 2 | 97.4% | 41% | 834 | 0.56 / 0.62 = 0.9 | between_species_paralog: NEWSINFRUG00000165134 | 3 |
p9 | q6 | +/+ | ENSP00000309336 | HOXC5 | q6 | q6 | 126 | scaffold_41 | 586387 | 586581 | 1 | 1 | 29.3% | 89.2% | 195 | 0.57 / 0.73 = 0.78 | noComparaHits: NEWSINFRUG00000136624 | 2 |
p10 | q7 | +/+ | ENSP00000305973 | HOXC4 | q7 | q7 | 268 | scaffold_41 | 601559 | 603707 | 1 | 2 | 84.8% | 60.6% | 684 | 0.51 / 0.52 = 0.98 | between_species_paralog: HXB4_FUGRU | 3 |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q8 | /+ | ENSP00000209875 | CBX5 | q8 | q8 | 187.2 | scaffold_41 | 739987 | 740827 | 1 | 3 | 57.1% | 60.8% | 429 | 0.37 / 0.53 = 0.7 | between_species_paralog: NEWSINFRUG00000132944 | 3 |
p13 | --- | gapq | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q9 | +/+ | ENSP00000312436 | NFE2 | q9 | q9 | 143 | scaffold_41 | 744327 | 744758 | -1 | 1 | 38.6% | 47.9% | 432 | 0.74 / 0.81 = 0.91 | noComparaHits: NEWSINFRUG00000132945 | 4 |
region 46 (region 4 for Drer)
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 19 -i 13745903:14343697 -f 45e4 some_geneID_to_be_selected
scoreRatio_sum=7.27 log_scoreRatio_sum=-0.8 focal_scoreRatio_sum=2.08
AlnScore=2686 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000262059 | CALCOCO1 | q1 | q1 | 115.9 | 19 | 13745903 | 13758918 | -1 | 2 | 22% | 38.2% | 441 | 0.94 / 0.91 = 1.03 | between_species_paralog: ENSDARG00000034062 | 2 |
p2 | q2 | +/+ | ENSP00000243056 | HOXC13 | q2 | q2 | 275 | 19 | 13896379 | 13897419 | 1 | 1 | 98.2% | 44.8% | 1041 | 0.57 / 0.57 = 1 | between_species_paralog: hoxa13a | 5 |
p3 | --- | gapq | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q3 | +/+ | ENSP00000243082 | HOXC11 | q3 | q3 | 144 | 19 | 13904077 | 13904907 | 1 | 1 | 93.1% | 34.6% | 831 | 0.56 / 0.77 = 0.73 | between_species_paralog: hoxa11a | 5 |
p5 | --- | gapq | ENSP00000307321 | HOXC10 | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | q4 | +/+ | ENSP00000302836 | HOXC9 | q4 | q4 | 198.5 | 19 | 13916949 | 13917991 | 1 | 2 | 72.7% | 54.1% | 555 | 0.52 / 0.64 = 0.81 | between_species_paralog: hoxa9a | 5 |
p7 | --- | gapq | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000243108 | HOXC6 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | q5 | +/+ | ENSP00000309336 | HOXC5 | q5 | q5 | 178.1 | 19 | 13926353 | 13927618 | 1 | 2 | 98.2% | 44.5% | 798 | 0.57 / 0.61 = 0.93 | noComparaHits: hoxa5a | 2 |
p10 | q6 | +/+ | ENSP00000305973 | HOXC4 | q6 | q6 | 267 | 19 | 13934404 | 13935585 | 1 | 2 | 95.5% | 52.5% | 735 | 0.51 / 0.52 = 0.98 | noComparaHits: ENSDARG00000057724
; hoxa3a |
4 |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q7 | +/+ | ENSP00000209875 | CBX5 | q7 | q7 | 230 | 19 | 14330201 | 14332102 | -1 | 4 | 94.2% | 58.3% | 534 | 0.37 / 0.42 = 0.88 | between_species_paralog: 562559 | 3 |
p13 | --- | gapq | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q8 | +/+ | ENSP00000312436 | NFE2 | q8 | q8 | 140 | 19 | 14342714 | 14343697 | -1 | 1 | 75.9% | 31.6% | 984 | 0.74 / 0.81 = 0.91 | noComparaHits: zgc:77291 | 6 |
region 47 (region 6 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l groupXI -i 1524174:1924958 -f 30e4 some_geneID_to_be_selected
scoreRatio_sum=6.41 log_scoreRatio_sum=-1.96 focal_scoreRatio_sum=2.01
AlnScore=2582 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 265 | groupXI | 1524174 | 1526021 | 1 | 2 | 97% | 47.7% | 939 | 0.57 / 0.58 = 0.98 | between_species_paralog: ENSGACG00000005617 | 4 |
p3 | --- | gapq | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gapq | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gapq | ENSP00000307321 | HOXC10 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | q2 | +/+ | ENSP00000302836 | HOXC9 | q2 | q2 | 151 | groupXI | 1626140 | 1626433 | 1 | 1 | 37.7% | 72.4% | 294 | 0.52 / 0.72 = 0.72 | noComparaHits: | 4 |
p7 | q3 | +/+ | ENSP00000040584 | HOXC8 | q4 | q3 | 109 | groupXI | 1639398 | 1639658 | 1 | 1 | 36.8% | 61.8% | 261 | 0.34 / 0.76 = 0.45 | noComparaHits: | 5 |
p8 | q4 | +/+ | ENSP00000243108 | HOXC6 | q4 | q4 | 130 | groupXI | 1655556 | 1655828 | 1 | 1 | 38.7% | 68.1% | 273 | 0.56 / 0.73 = 0.77 | noComparaHits: ENSGACG00000005623 | 2 |
p9 | q5 | +/+ | ENSP00000309336 | HOXC5 | q5 | q5 | 125 | groupXI | 1661252 | 1661446 | 1 | 1 | 29.3% | 87.7% | 195 | 0.57 / 0.73 = 0.78 | noComparaHits: ENSGACG00000005626 | 3 |
p10 | q6 | +/+ | ENSP00000305973 | HOXC4 | q6 | q6 | 267 | groupXI | 1677315 | 1679544 | 1 | 2 | 84.1% | 55.9% | 723 | 0.51 / 0.52 = 0.98 | between_species_paralog: ENSGACG00000005628 | 3 |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q7 | /+ | ENSP00000209875 | CBX5 | q7 | q7 | 211.1 | groupXI | 1916376 | 1919816 | 1 | 3 | 89% | 52.7% | 609 | 0.37 / 0.47 = 0.79 | between_species_paralog: ENSGACG00000005637 | 2 |
p13 | --- | gapq | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q8 | +/+ | ENSP00000312436 | NFE2 | q8 | q8 | 157 | groupXI | 1924197 | 1924958 | -1 | 1 | 59.8% | 41.3% | 762 | 0.74 / 0.79 = 0.94 | noComparaHits: ENSGACG00000005644 | 4 |
region 48 (region 4 for Olat)
retrieve target region: getEnsemblProteins.pl -h Oryzias_latipes -l 8 -i 24280190:24595464 -f 24e4 some_geneID_to_be_selected
scoreRatio_sum=6.29 log_scoreRatio_sum=-2.05 focal_scoreRatio_sum=2
AlnScore=2552 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Oryzias_latipes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 248 | 8 | 24280190 | 24281752 | 1 | 2 | 96.1% | 47% | 939 | 0.57 / 0.61 = 0.93 | between_species_paralog: Q3V614_ORYLA | 4 |
p3 | --- | gapq | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gapq | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gapq | ENSP00000307321 | HOXC10 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | q2 | +/+ | ENSP00000302836 | HOXC9 | q2 | q2 | 140 | 8 | 24318541 | 24318765 | 1 | 1 | 28.8% | 85.3% | 225 | 0.52 / 0.74 = 0.7 | between_species_paralog: Q3V615_ORYLA | 4 |
p7 | q3 | +/+ | ENSP00000040584 | HOXC8 | q3 | q3 | 157 | 8 | 24328909 | 24329337 | 1 | 1 | 59.5% | 53.4% | 429 | 0.34 / 0.66 = 0.52 | noComparaHits: Q3V617_ORYLA | 2 |
p8 | q4 | +/+ | ENSP00000243108 | HOXC6 | q4 | q4 | 130 | 8 | 24362765 | 24363079 | 1 | 1 | 45.1% | 60.6% | 315 | 0.56 / 0.73 = 0.77 | between_species_paralog: Q3V617_ORYLA | 3 |
p9 | q5 | +/+ | ENSP00000309336 | HOXC5 | q5 | q5 | 126 | 8 | 24368213 | 24368491 | 1 | 1 | 41.9% | 67.7% | 279 | 0.57 / 0.73 = 0.78 | noComparaHits: Q9PVS0_ORYLA | 2 |
p10 | q6 | +/+ | ENSP00000305973 | HOXC4 | q6 | q6 | 273 | 8 | 24381089 | 24382996 | 1 | 2 | 89.8% | 55.1% | 732 | 0.51 / 0.51 = 1 | between_species_paralog: Q3V619_ORYLA | 3 |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q7 | /+ | ENSP00000209875 | CBX5 | q7 | q7 | 189.5 | 8 | 24585261 | 24589103 | 1 | 3 | 53.9% | 81.6% | 309 | 0.37 / 0.52 = 0.71 | between_species_paralog: ENSORLG00000017056 | 3 |
p13 | --- | gapq | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q8 | +/+ | ENSP00000312436 | NFE2 | q8 | q8 | 118 | 8 | 24595054 | 24595464 | -1 | 1 | 36.7% | 46.4% | 411 | 0.74 / 0.84 = 0.88 | noComparaHits: ENSORLG00000017060 | 5 |
region 49 (region 5 for Xtro)
retrieve target region: getEnsemblProteins.pl -h Xenopus_tropicalis -l scaffold_161 -i 1967281:2103539 -f 10e4 some_geneID_to_be_selected
scoreRatio_sum=5.24 log_scoreRatio_sum=-2.42 focal_scoreRatio_sum=0.76
AlnScore=2190 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Xenopus_tropicalis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000302836 | HOXC9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000243108 | HOXC6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000309336 | HOXC5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000305973 | HOXC4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q1 | +/+ | ENSP00000338606 | SMUG1 | q1 | q1 | 349 | scaffold_161 | 2101409 | 2103539 | 1 | 2 | 91.1% | 65.6% | 732 | 0.73 / 0.38 = 1.92 | ortholog_one2one: SMUG1 | 1 |
p12 | q2 | +/+ | ENSP00000209875 | CBX5 | q2 | q2 | 335.1 | scaffold_161 | 1998686 | 2001984 | 1 | 4 | 100% | 81.7% | 552 | 0.37 / 0.16 = 2.31 | ortholog_one2one: cbx5 | 1 |
p13 | q3 | +/+ | ENSP00000341826 | HNRPA1 | q3 | q3 | 279.5 | scaffold_161 | 1977151 | 1978635 | -1 | 3 | 40.1% | 86.8% | 453 | 0.01 / 0.5 = 0.02 | ortholog_one2many: hnrpa1 | 4 |
p14 | q4 | +/+ | ENSP00000312436 | NFE2 | q4 | q4 | 187 | scaffold_161 | 1967281 | 1967934 | 1 | 1 | 60.3% | 48.5% | 654 | 0.74 / 0.75 = 0.99 | ortholog_one2one: NFE2 | 2 |
region 50 (region 4 for Tnig)
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l Un_random -i 37976867:38178237 -f 15e4 some_geneID_to_be_selected
scoreRatio_sum=5.4 log_scoreRatio_sum=-2.02 focal_scoreRatio_sum=1.72
AlnScore=2184 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Tetraodon_nigroviridis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 273 | Un_random | 38176507 | 38178237 | -1 | 2 | 98.2% | 44.8% | 996 | 0.57 / 0.57 = 1 | between_species_paralog: GSTENG00020457001
; HOXB13 |
3 |
p3 | --- | gapq | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gapq | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gapq | ENSP00000307321 | HOXC10 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | q2 | +/+ | ENSP00000302836 | HOXC9 | q2 | q2 | 140 | Un_random | 38140064 | 38140297 | -1 | 1 | 30% | 83.3% | 234 | 0.52 / 0.74 = 0.7 | noComparaHits: GSTENG00020456001 | 4 |
p7 | q3 | +/+ | ENSP00000040584 | HOXC8 | q3 | q3 | 154 | Un_random | 38129988 | 38130416 | -1 | 1 | 59.5% | 52.7% | 429 | 0.34 / 0.67 = 0.51 | between_species_paralog: HOXB8 | 2 |
p8 | --- | gapq | ENSP00000243108 | HOXC6 | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | q4 | +/+ | ENSP00000309336 | HOXC5 | q4 | q4 | 126 | Un_random | 38101307 | 38101501 | -1 | 1 | 29.3% | 89.2% | 195 | 0.57 / 0.73 = 0.78 | ortholog_one2many: HOXB6 | 2 |
p10 | q5 | +/+ | ENSP00000305973 | HOXC4 | q5 | q5 | 259 | Un_random | 38083035 | 38085184 | -1 | 2 | 84.8% | 57.1% | 702 | 0.51 / 0.54 = 0.94 | between_species_paralog: HOXB4 | 3 |
--- | q6 | gapp | - | - | - | q6 | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q7 | /+ | ENSP00000209875 | CBX5 | q7 | q7 | 126 | Un_random | 37980902 | 37981705 | -1 | 1 | 79.1% | 33.6% | 804 | 0.37 / 0.68 = 0.54 | between_species_paralog: GSTENG00004640001 | 3 |
p13 | --- | gapq | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q8 | +/+ | ENSP00000312436 | NFE2 | q8 | q8 | 150 | Un_random | 37976867 | 37977349 | 1 | 1 | 41.3% | 49.1% | 483 | 0.74 / 0.8 = 0.93 | noComparaHits: GSTENG00004639001 | 4 |
region 51 (region 5 for Drer)
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 2 -i 12067416:12092957 -f 19e3 some_geneID_to_be_selected
scoreRatio_sum=4.85 log_scoreRatio_sum=-0.17 focal_scoreRatio_sum=2.3
AlnScore=2098 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 178.3 | 2 | 12090569 | 12092957 | -1 | 2 | 57% | 50% | 579 | 0.57 / 0.72 = 0.79 | noComparaHits: hoxd13a | 6 |
p3 | q2 | +/+ | ENSP00000243103 | HOXC12 | q2 | q2 | 201.3 | 2 | 12085228 | 12087473 | -1 | 2 | 70.9% | 48.8% | 603 | 0.51 / 0.5 = 1.02 | noComparaHits: hoxd12a | 3 |
p4 | q3 | +/+ | ENSP00000243082 | HOXC11 | q3 | q3 | 274 | 2 | 12079182 | 12080927 | -1 | 2 | 93.1% | 51.2% | 879 | 0.56 / 0.56 = 1 | ortholog_one2many: hoxd11a | 3 |
p5 | q4 | +/+ | ENSP00000307321 | HOXC10 | q4 | q4 | 277 | 2 | 12071103 | 12072729 | -1 | 2 | 91.8% | 47.2% | 912 | 0.59 / 0.6 = 0.98 | noComparaHits: hoxd10a | 1 |
p6 | q5 | +/+ | ENSP00000302836 | HOXC9 | q5 | q5 | 280 | 2 | 12067416 | 12068514 | -1 | 2 | 99.2% | 53% | 783 | 0.52 / 0.49 = 1.06 | between_species_paralog: hoxd9a | 2 |
p7 | --- | gape | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000243108 | HOXC6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000309336 | HOXC5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000305973 | HOXC4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 52 (region 6 for Drer)
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 11 -i 1362989:1521780 -f 12e4 some_geneID_to_be_selected
scoreRatio_sum=5.53 log_scoreRatio_sum=1.83 focal_scoreRatio_sum=1.4
AlnScore=1914 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
--- | q1 | gaps | - | - | - | q1 | - | - | - | - | - | - | - | - | - | - | - | - |
--- | q2 | gaps | - | - | - | q2 | - | - | - | - | - | - | - | - | - | - | - | - |
p1 | --- | gapq | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gapq | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q3 | /+ | ENSP00000243103 | HOXC12 | q3 | q3 | 281 | 11 | 1397134 | 1398255 | 1 | 2 | 96.5% | 53.7% | 816 | 0.51 / 0.3 = 1.7 | ortholog_one2one: hoxc12b | 2 |
p4 | --- | gapq | ENSP00000243082 | HOXC11 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gapq | ENSP00000307321 | HOXC10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gapq | ENSP00000302836 | HOXC9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000040584 | HOXC8 | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q4 | +/+ | ENSP00000243108 | HOXC6 | q4 | q4 | 349 | 11 | 1379049 | 1380153 | -1 | 2 | 100% | 71.3% | 699 | 0.56 / 0.28 = 2 | ortholog_one2many: hoxc6b | 2 |
p9 | --- | gapq | ENSP00000309336 | HOXC5 | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gapq | ENSP00000305973 | HOXC4 | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q5 | +/+ | ENSP00000338606 | SMUG1 | q5 | q5 | 340.1 | 11 | 1362989 | 1365267 | 1 | 2 | 90% | 63.9% | 732 | 0.73 / 0.4 = 1.83 | ortholog_one2one: ENSDARG00000063611 | 1 |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 53 (region 3 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 27 -i 3518829:3641295 -f 92e3 some_geneID_to_be_selected
scoreRatio_sum=3.64 log_scoreRatio_sum=-0.38 focal_scoreRatio_sum=1.81
AlnScore=1728 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 248 | 27 | 3518829 | 3521207 | 1 | 2 | 74.8% | 50.6% | 771 | 0.57 / 0.61 = 0.93 | between_species_paralog: HOXB13 | 2 |
p3 | --- | gapq | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gapq | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gapq | ENSP00000307321 | HOXC10 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | q2 | +/+ | ENSP00000302836 | HOXC9 | q2 | q2 | 241.3 | 27 | 3563906 | 3568210 | 1 | 2 | 88.5% | 52.1% | 618 | 0.52 / 0.56 = 0.93 | between_species_paralog: HOXB9 | 3 |
p7 | q3 | +/+ | ENSP00000040584 | HOXC8 | q3 | q3 | 305 | 27 | 3578995 | 3580475 | 1 | 2 | 93.8% | 63.1% | 702 | 0.34 / 0.34 = 1 | ortholog_one2many: HXB8_CHICK | 1 |
p8 | --- | gapq | ENSP00000243108 | HOXC6 | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | q4 | +/+ | ENSP00000309336 | HOXC5 | q4 | q4 | 126 | 27 | 3586387 | 3586581 | 1 | 1 | 29.3% | 89.2% | 195 | 0.57 / 0.73 = 0.78 | noComparaHits: HXB5_CHICK
; HXB8_CHICK |
1 |
p10 | --- | gape | ENSP00000305973 | HOXC4 | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 54 (region 3 for Btau)
retrieve target region: getEnsemblProteins.pl -h Bos_taurus -l 19 -i 30587825:31423489 -f 63e4 some_geneID_to_be_selected
scoreRatio_sum=4.55 log_scoreRatio_sum=-1.78 focal_scoreRatio_sum=1.64
AlnScore=1631 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Bos_taurus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | /+ | ENSP00000243056 | HOXC13 | q1 | q1 | 210.7 | 19 | 31422097 | 31423462 | 1 | 2 | 49.1% | 58.7% | 501 | 0.57 / 0.67 = 0.85 | between_species_paralog: HOXB13 | 3 |
p3 | --- | gapq | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gapq | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gapq | ENSP00000307321 | HOXC10 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | q2 | +/+ | ENSP00000302836 | HOXC9 | q2 | q2 | 149 | 19 | 31239444 | 31239746 | -1 | 1 | 42.7% | 69.4% | 303 | 0.52 / 0.73 = 0.71 | between_species_paralog: HOXB9 | 4 |
p7 | q3 | +/+ | ENSP00000040584 | HOXC8 | q3 | q3 | 148 | 19 | 31230142 | 31230438 | -1 | 1 | 40.5% | 72.7% | 297 | 0.34 / 0.68 = 0.5 | noComparaHits: | 3 |
p8 | q4 | +/+ | ENSP00000243108 | HOXC6 | q4 | q4 | 123 | 19 | 31225476 | 31225664 | -1 | 1 | 26.8% | 88.9% | 189 | 0.56 / 0.74 = 0.76 | noComparaHits: HXB7_BOVIN | 4 |
p9 | --- | gapq | ENSP00000309336 | HOXC5 | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q5 | +/+ | ENSP00000305973 | HOXC4 | q5 | q5 | 166 | 19 | 31195664 | 31195927 | -1 | 1 | 33.3% | 87.5% | 264 | 0.51 / 0.7 = 0.73 | noComparaHits: HOXB5 | 4 |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gapq | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gapq | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q6 | /+ | ENSP00000312436 | NFE2 | q6 | q6 | 192 | 19 | 31092565 | 31093524 | -1 | 1 | 68.9% | 38.4% | 960 | 0.74 / 0.74 = 1 | noComparaHits: NFE2L1 | 2 |
region 55 (region 5 for Olat)
retrieve target region: getEnsemblProteins.pl -h Oryzias_latipes -l 19 -i 17517940:17594165 -f 57e3 some_geneID_to_be_selected
scoreRatio_sum=4.14 log_scoreRatio_sum=-0.99 focal_scoreRatio_sum=0.85
AlnScore=1564 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Oryzias_latipes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000302836 | HOXC9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000040584 | HOXC8 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q1 | +/+ | ENSP00000243108 | HOXC6 | q1 | q1 | 188.2 | 19 | 17592729 | 17594165 | -1 | 2 | 86% | 48.6% | 657 | 0.56 / 0.61 = 0.92 | between_species_paralog: Q9PVR5_ORYLA | 2 |
p9 | q2 | +/+ | ENSP00000309336 | HOXC5 | q2 | q2 | 126 | 19 | 17590252 | 17590446 | -1 | 1 | 29.3% | 89.2% | 195 | 0.57 / 0.73 = 0.78 | noComparaHits: Q3V611_ORYLA | 2 |
p10 | q3 | +/+ | ENSP00000305973 | HOXC4 | q2 | q3 | 102 | 19 | 17580695 | 17581018 | -1 | 1 | 39% | 50.9% | 324 | 0.51 / 0.81 = 0.63 | noComparaHits: Q3V612_ORYLA | noData |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q4 | /+ | ENSP00000209875 | CBX5 | q4 | q4 | 220.7 | 19 | 17525501 | 17526816 | -1 | 3 | 86.4% | 56.6% | 552 | 0.37 / 0.45 = 0.82 | between_species_paralog: ENSORLG00000012360 | 2 |
p13 | --- | gapq | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q5 | +/+ | ENSP00000312436 | NFE2 | q5 | q5 | 185 | 19 | 17517940 | 17518959 | 1 | 1 | 78.3% | 34.3% | 1020 | 0.74 / 0.75 = 0.99 | noComparaHits: ENSORLG00000012340 | 3 |
region 56 (region 7 for Drer)
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 16 -i 20974639:21201168 -f 17e4 some_geneID_to_be_selected
scoreRatio_sum=3.68 log_scoreRatio_sum=-0.34 focal_scoreRatio_sum=1.79
AlnScore=1533 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 283 | 16 | 21167725 | 21168969 | 1 | 2 | 94.2% | 49.4% | 825 | 0.57 / 0.56 = 1.02 | between_species_paralog: hoxa13b | 4 |
p3 | --- | gapq | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q2 | +/+ | ENSP00000243082 | HOXC11 | q2 | q2 | 256 | 16 | 21177661 | 21179250 | 1 | 2 | 87.2% | 52% | 798 | 0.56 / 0.59 = 0.95 | between_species_paralog: hoxa11b | 4 |
p5 | q3 | +/+ | ENSP00000307321 | HOXC10 | q3 | q3 | 229.3 | 16 | 21182995 | 21185153 | 1 | 2 | 69.3% | 50.4% | 717 | 0.59 / 0.67 = 0.88 | noComparaHits: hoxa10b | 3 |
p6 | q4 | +/+ | ENSP00000302836 | HOXC9 | q4 | q4 | 205.5 | 16 | 21188212 | 21189729 | 1 | 2 | 97.7% | 46.8% | 747 | 0.52 / 0.63 = 0.83 | between_species_paralog: hoxa9b | 4 |
p7 | --- | gape | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000243108 | HOXC6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000309336 | HOXC5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000305973 | HOXC4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 57 (region 7 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_2646 -i 1107:47554 -f 35e3 some_geneID_to_be_selected
scoreRatio_sum=4.62 log_scoreRatio_sum=1.1 focal_scoreRatio_sum=0.95
AlnScore=1423 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000262059 | CALCOCO1 | q1 | q1 | 148.7 | contig_2646 | 45027 | 47554 | 1 | 3 | 19.1% | 46.8% | 417 | 0.94 / 0.89 = 1.06 | noComparaHits: ENSGACG00000009377 | 1 |
p2 | q2 | +/+ | ENSP00000243056 | HOXC13 | q2 | q2 | 489 | contig_2646 | 8977 | 11713 | -1 | 2 | 99.7% | 71% | 915 | 0.57 / 0.24 = 2.37 | noComparaHits: ENSGACG00000009389 | 1 |
p3 | q3 | +/+ | ENSP00000243103 | HOXC12 | q3 | q3 | 228 | contig_2646 | 1107 | 1694 | -1 | 1 | 70.6% | 59.6% | 588 | 0.51 / 0.43 = 1.19 | noComparaHits: | 2 |
p4 | --- | gape | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000307321 | HOXC10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000302836 | HOXC9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000243108 | HOXC6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000309336 | HOXC5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000305973 | HOXC4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 58 (region 4 for Btau)
retrieve target region: getEnsemblProteins.pl -h Bos_taurus -l 4 -i 39661371:40179376 -f 39e4 some_geneID_to_be_selected
scoreRatio_sum=4.48 log_scoreRatio_sum=-0.59 focal_scoreRatio_sum=1.99
AlnScore=1399 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Bos_taurus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000262059 | CALCOCO1 | q1 | q1 | 119 | 4 | 39661371 | 39677269 | -1 | 2 | 15.9% | 48.2% | 327 | 0.94 / 0.91 = 1.03 | between_species_paralog: TAX1BP1 | 2 |
p2 | q2 | +/+ | ENSP00000243056 | HOXC13 | q2 | q2 | 135 | 4 | 40143543 | 40144070 | 1 | 1 | 51.5% | 48.6% | 528 | 0.57 / 0.79 = 0.72 | between_species_paralog: HOXA13 | 4 |
p3 | --- | gapq | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q3 | +/+ | ENSP00000243082 | HOXC11 | q3 | q3 | 274 | 4 | 40157135 | 40159492 | 1 | 2 | 70.1% | 61.5% | 663 | 0.56 / 0.56 = 1 | between_species_paralog: HOXA11 | 2 |
p5 | q4 | +/+ | ENSP00000307321 | HOXC10 | q4 | q4 | 164 | 4 | 40170821 | 40171084 | 1 | 1 | 26% | 88.8% | 264 | 0.59 / 0.76 = 0.78 | noComparaHits: HOXA10 | 3 |
p6 | q5 | +/+ | ENSP00000302836 | HOXC9 | q5 | q5 | 247.6 | 4 | 40177480 | 40179376 | 1 | 2 | 99.2% | 47.8% | 885 | 0.52 / 0.55 = 0.95 | between_species_paralog: HOXA9 | 3 |
p7 | --- | gape | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000243108 | HOXC6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000309336 | HOXC5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000305973 | HOXC4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 59 (region 5 for Trub)
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_130 -i 627432:684837 -f 43e3 some_geneID_to_be_selected
scoreRatio_sum=3.53 log_scoreRatio_sum=-0.5 focal_scoreRatio_sum=0.73
AlnScore=1389 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Takifugu_rubripes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000302836 | HOXC9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000040584 | HOXC8 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q1 | +/+ | ENSP00000243108 | HOXC6 | q1 | q1 | 186.9 | scaffold_130 | 627432 | 629010 | 1 | 2 | 86% | 48.9% | 651 | 0.56 / 0.61 = 0.92 | between_species_paralog: NEWSINFRUG00000156875 | 2 |
p9 | q2 | +/+ | ENSP00000309336 | HOXC5 | q2 | q2 | 126 | scaffold_130 | 631310 | 631504 | 1 | 1 | 29.3% | 89.2% | 195 | 0.57 / 0.73 = 0.78 | noComparaHits: NEWSINFRUG00000132774 | 2 |
p10 | --- | gapq | ENSP00000305973 | HOXC4 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q3 | /+ | ENSP00000209875 | CBX5 | q3 | q3 | 227.2 | scaffold_130 | 680125 | 680882 | 1 | 4 | 66.5% | 77.2% | 381 | 0.37 / 0.43 = 0.86 | between_species_paralog: NEWSINFRUG00000131654 | 2 |
p13 | --- | gapq | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q4 | +/+ | ENSP00000312436 | NFE2 | q4 | q4 | 181 | scaffold_130 | 683878 | 684837 | -1 | 1 | 68.9% | 36.1% | 960 | 0.74 / 0.76 = 0.97 | noComparaHits: NEWSINFRUG00000131651 | 3 |
region 60 (region 6 for Olat)
retrieve target region: getEnsemblProteins.pl -h Oryzias_latipes -l 16 -i 13089813:13274687 -f 14e4 some_geneID_to_be_selected
scoreRatio_sum=3.51 log_scoreRatio_sum=-0.56 focal_scoreRatio_sum=1.63
AlnScore=1371 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Oryzias_latipes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 287 | 16 | 13115192 | 13116153 | 1 | 2 | 96.4% | 49.5% | 852 | 0.57 / 0.55 = 1.04 | between_species_paralog: Q3V623_ORYLA | 3 |
p3 | --- | gapq | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q2 | +/+ | ENSP00000243082 | HOXC11 | q2 | q2 | 242.4 | 16 | 13120125 | 13121652 | 1 | 2 | 94.7% | 49.2% | 816 | 0.56 / 0.61 = 0.92 | between_species_paralog: Q3V624_ORYLA | 3 |
p5 | q3 | +/+ | ENSP00000307321 | HOXC10 | q3 | q3 | 216.6 | 16 | 13127640 | 13129140 | 1 | 2 | 91.8% | 42.3% | 933 | 0.59 / 0.69 = 0.86 | noComparaHits: Q3V625_ORYLA | 3 |
p6 | q4 | +/+ | ENSP00000302836 | HOXC9 | q4 | q4 | 134 | 16 | 13131568 | 13131795 | 1 | 1 | 29.2% | 80.3% | 228 | 0.52 / 0.75 = 0.69 | between_species_paralog: Q3V626_ORYLA | 5 |
p7 | --- | gape | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000243108 | HOXC6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000309336 | HOXC5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000305973 | HOXC4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 61 (region 8 for Drer)
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 12 -i 34135896:34673873 -f 40e4 some_geneID_to_be_selected
scoreRatio_sum=3.05 log_scoreRatio_sum=-1.1 focal_scoreRatio_sum=0.99
AlnScore=1358 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000302836 | HOXC9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q1 | +/+ | ENSP00000040584 | HOXC8 | q1,q6 | q1 | 247 | 12 | 34135896 | 34138094 | 1 | 2 | 99.6% | 52.2% | 726 | 0.34 / 0.47 = 0.72 | between_species_paralog: hoxb8b | 3 |
p8 | q2 | +/+ | ENSP00000243108 | HOXC6 | q2 | q2 | 183.9 | 12 | 34145297 | 34146365 | 1 | 2 | 86% | 49.3% | 627 | 0.56 / 0.62 = 0.9 | between_species_paralog: ENSDARG00000054123 | 4 |
p9 | q3 | +/+ | ENSP00000309336 | HOXC5 | q3,q4 | q3 | 126 | 12 | 34613378 | 34613572 | 1 | 1 | 29.3% | 89.2% | 195 | 0.57 / 0.73 = 0.78 | noComparaHits: hoxb5b | 4 |
p10 | q4 | /+ | ENSP00000305973 | HOXC4 | q3,q4 | q4 | 124 | 12 | 34660341 | 34660601 | -1 | 1 | 33% | 67.8% | 261 | 0.51 / 0.78 = 0.65 | noComparaHits: hoxb5b | 6 |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gapq | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gapq | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gapq | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
--- | q5 | gape | - | - | - | q5 | - | - | - | - | - | - | - | - | - | - | - | - |
--- | q6 | gape | - | - | - | q6 | - | - | - | - | - | - | - | - | - | - | - | - |
region 62 (region 5 for Btau)
retrieve target region: getEnsemblProteins.pl -h Bos_taurus -l 4 -i 37099437:37159149 -f 45e3 some_geneID_to_be_selected
scoreRatio_sum=3.09 log_scoreRatio_sum=-1.2 focal_scoreRatio_sum=0.93
AlnScore=1344 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Bos_taurus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000302836 | HOXC9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q1 | +/+ | ENSP00000040584 | HOXC8 | q1 | q1 | 112 | 4 | 37099446 | 37099652 | 1 | 1 | 28.9% | 75.7% | 207 | 0.34 / 0.76 = 0.45 | noComparaHits: HOXA7 | 5 |
p8 | q2 | +/+ | ENSP00000243108 | HOXC6 | q2 | q2 | 211.1 | 4 | 37106916 | 37109024 | 1 | 2 | 97% | 46.6% | 741 | 0.56 / 0.57 = 0.98 | between_species_paralog: HOXA6 | 2 |
p9 | q3 | +/+ | ENSP00000309336 | HOXC5 | q3 | q3 | 178.5 | 4 | 37111024 | 37112741 | 1 | 2 | 93.2% | 45.2% | 729 | 0.57 / 0.61 = 0.93 | noComparaHits: HOXA5 | 2 |
p10 | q4 | +/+ | ENSP00000305973 | HOXC4 | q4 | q4 | 167 | 4 | 37124791 | 37125126 | 1 | 1 | 44.3% | 70.1% | 336 | 0.51 / 0.7 = 0.73 | between_species_paralog: HOXA4 | 3 |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 63 (region 8 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l groupXX -i 9710597:9849786 -f 10e4 some_geneID_to_be_selected
scoreRatio_sum=3.47 log_scoreRatio_sum=-0.62 focal_scoreRatio_sum=1.6
AlnScore=1312 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 291 | groupXX | 9710597 | 9711713 | 1 | 2 | 94.5% | 51% | 834 | 0.57 / 0.54 = 1.06 | between_species_paralog: ENSGACG00000008296 | 3 |
p3 | --- | gapq | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q2 | +/+ | ENSP00000243082 | HOXC11 | q2 | q2 | 262 | groupXX | 9716860 | 9718593 | 1 | 2 | 86.8% | 54.3% | 822 | 0.56 / 0.58 = 0.97 | between_species_paralog: ENSGACG00000008297 | 3 |
p5 | q3 | +/+ | ENSP00000307321 | HOXC10 | q3 | q3 | 152 | groupXX | 9724044 | 9724295 | 1 | 1 | 24.6% | 84.5% | 252 | 0.59 / 0.78 = 0.76 | noComparaHits: ENSGACG00000008303 | 4 |
p6 | q4 | +/+ | ENSP00000302836 | HOXC9 | q4 | q4 | 131 | groupXX | 9727578 | 9727799 | 1 | 1 | 28.5% | 81.1% | 222 | 0.52 / 0.76 = 0.68 | between_species_paralog: ENSGACG00000008310 | 7 |
p7 | --- | gape | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000243108 | HOXC6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000309336 | HOXC5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000305973 | HOXC4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 64 (region 9 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_1095 -i 26357:49732 -f 18e3 some_geneID_to_be_selected
scoreRatio_sum=3.47 log_scoreRatio_sum=-0.62 focal_scoreRatio_sum=1.6
AlnScore=1312 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 291 | contig_1095 | 26357 | 27473 | 1 | 2 | 94.5% | 51% | 834 | 0.57 / 0.54 = 1.06 | noComparaHits: ENSGACG00000008296 | 3 |
p3 | --- | gapq | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q2 | +/+ | ENSP00000243082 | HOXC11 | q2 | q2 | 262 | contig_1095 | 32620 | 34353 | 1 | 2 | 86.8% | 54.3% | 822 | 0.56 / 0.58 = 0.97 | noComparaHits: ENSGACG00000008297 | 3 |
p5 | q3 | +/+ | ENSP00000307321 | HOXC10 | q3 | q3 | 152 | contig_1095 | 39804 | 40055 | 1 | 1 | 24.6% | 84.5% | 252 | 0.59 / 0.78 = 0.76 | noComparaHits: ENSGACG00000008303 | 4 |
p6 | q4 | +/+ | ENSP00000302836 | HOXC9 | q4 | q4 | 131 | contig_1095 | 43338 | 43559 | 1 | 1 | 28.5% | 81.1% | 222 | 0.52 / 0.76 = 0.68 | noComparaHits: ENSGACG00000008310 | 7 |
p7 | --- | gape | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000243108 | HOXC6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000309336 | HOXC5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000305973 | HOXC4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 65 (region 10 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_2642 -i 48751:91272 -f 32e3 some_geneID_to_be_selected
scoreRatio_sum=1.78 log_scoreRatio_sum=-4.18 focal_scoreRatio_sum=0.22
AlnScore=1305 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000302836 | HOXC9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000243108 | HOXC6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000309336 | HOXC5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000305973 | HOXC4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q1 | +/+ | ENSP00000209875 | CBX5 | q1 | q1 | 204.5 | contig_2642 | 54746 | 56343 | 1 | 3 | 74.3% | 63.3% | 468 | 0.37 / 0.49 = 0.76 | noComparaHits: ENSGACG00000009433 | 3 |
p13 | q2 | +/+ | ENSP00000341826 | HNRPA1 | q2 | q2 | 304.8 | contig_2642 | 51296 | 53002 | -1 | 2 | 80.4% | 48% | 1152 | 0.01 / 0.45 = 0.02 | noComparaHits: ENSGACG00000009435 | 3 |
p14 | q3 | +/+ | ENSP00000312436 | NFE2 | q3 | q3 | 194 | contig_2642 | 48751 | 49581 | 1 | 1 | 64.3% | 44.3% | 831 | 0.74 / 0.74 = 1 | noComparaHits: ENSGACG00000009442 | 1 |
region 66 (region 6 for Trub)
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_48 -i 960816:1097507 -f 10e4 some_geneID_to_be_selected
scoreRatio_sum=3.41 log_scoreRatio_sum=-0.67 focal_scoreRatio_sum=1.6
AlnScore=1296 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Takifugu_rubripes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 263 | scaffold_48 | 1084989 | 1085990 | -1 | 1 | 98.5% | 43.6% | 1002 | 0.57 / 0.59 = 0.97 | between_species_paralog: NEWSINFRUG00000132089 | 5 |
p3 | --- | gapq | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q2 | +/+ | ENSP00000243082 | HOXC11 | q2 | q2 | 268 | scaffold_48 | 1078632 | 1080381 | -1 | 2 | 94.4% | 53% | 861 | 0.56 / 0.57 = 0.98 | between_species_paralog: NEWSINFRUG00000138060 | 2 |
p5 | q3 | +/+ | ENSP00000307321 | HOXC10 | q3 | q3 | 157 | scaffold_48 | 1066192 | 1066446 | -1 | 1 | 24.9% | 85.9% | 255 | 0.59 / 0.77 = 0.77 | noComparaHits: NEWSINFRUG00000138061 | 4 |
p6 | q4 | +/+ | ENSP00000302836 | HOXC9 | q4 | q4 | 137 | scaffold_48 | 1063108 | 1063341 | -1 | 1 | 30% | 80.8% | 234 | 0.52 / 0.75 = 0.69 | between_species_paralog: NEWSINFRUG00000138062 | 5 |
p7 | --- | gape | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000243108 | HOXC6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000309336 | HOXC5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000305973 | HOXC4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 67 (region 11 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_2344 -i 19832:66195 -f 35e3 some_geneID_to_be_selected
scoreRatio_sum=3.22 log_scoreRatio_sum=-0.88 focal_scoreRatio_sum=1.35
AlnScore=1258 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | q1 | +/+ | ENSP00000302836 | HOXC9 | q1 | q1 | 145 | contig_2344 | 65911 | 66165 | -1 | 1 | 32.7% | 80% | 255 | 0.52 / 0.73 = 0.71 | noComparaHits: | 5 |
p7 | --- | gapq | ENSP00000040584 | HOXC8 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q2 | +/+ | ENSP00000243108 | HOXC6 | q2 | q2 | 130 | contig_2344 | 60661 | 60927 | -1 | 1 | 39.1% | 70.7% | 267 | 0.56 / 0.73 = 0.77 | noComparaHits: ENSGACG00000007112 | 2 |
p9 | q3 | +/+ | ENSP00000309336 | HOXC5 | q3 | q3 | 125 | contig_2344 | 54427 | 54621 | -1 | 1 | 29.3% | 87.7% | 195 | 0.57 / 0.73 = 0.78 | noComparaHits: ENSGACG00000007108 | 3 |
p10 | q4 | +/+ | ENSP00000305973 | HOXC4 | q4 | q4 | 266 | contig_2344 | 45055 | 46274 | -1 | 2 | 88.3% | 55.8% | 684 | 0.51 / 0.53 = 0.96 | noComparaHits: ENSGACG00000007100 | 4 |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 68 (region 5 for Tnig)
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l 8 -i 6606129:6713312 -f 80e3 some_geneID_to_be_selected
scoreRatio_sum=3.29 log_scoreRatio_sum=-0.8 focal_scoreRatio_sum=1.6
AlnScore=1238 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Tetraodon_nigroviridis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 179.4 | 8 | 6606129 | 6607246 | 1 | 2 | 82.7% | 41.1% | 717 | 0.57 / 0.72 = 0.79 | between_species_paralog: HOXAb13
; GSTENG00034119001 |
4 |
p3 | --- | gapq | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q2 | +/+ | ENSP00000243082 | HOXC11 | q2 | q2 | 249 | 8 | 6611310 | 6613075 | 1 | 2 | 94.4% | 48.4% | 921 | 0.56 / 0.6 = 0.93 | between_species_paralog: GSTENG00034118001
; HOXAb11 |
4 |
p5 | q3 | +/+ | ENSP00000307321 | HOXC10 | q3 | q3 | 231.8 | 8 | 6616572 | 6618000 | 1 | 2 | 64.9% | 52.4% | 672 | 0.59 / 0.67 = 0.88 | noComparaHits: HOXAb10
; GSTENG00034117001 |
2 |
p6 | q4 | +/+ | ENSP00000302836 | HOXC9 | q4 | q4 | 135 | 8 | 6620995 | 6621216 | 1 | 1 | 28.5% | 83.8% | 222 | 0.52 / 0.75 = 0.69 | between_species_paralog: HOXAb9 | 5 |
p7 | --- | gape | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000243108 | HOXC6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000309336 | HOXC5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000305973 | HOXC4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 69 (region 12 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_2345 -i 69:24078 -f 18e3 some_geneID_to_be_selected
scoreRatio_sum=2.89 log_scoreRatio_sum=-0.11 focal_scoreRatio_sum=0.97
AlnScore=1188 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 295 | contig_2345 | 22662 | 24078 | -1 | 2 | 94.8% | 52.3% | 858 | 0.57 / 0.54 = 1.06 | noComparaHits: Q9PWC4_GASAC | 2 |
p3 | --- | gapq | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q2 | +/+ | ENSP00000243082 | HOXC11 | q2 | q2 | 259 | contig_2345 | 11801 | 13413 | -1 | 2 | 88.2% | 49.3% | 849 | 0.56 / 0.59 = 0.95 | noComparaHits: ENSGACG00000007132 | 4 |
p5 | q3 | +/+ | ENSP00000307321 | HOXC10 | q3 | q3 | 230 | contig_2345 | 4545 | 6328 | -1 | 2 | 100% | 40% | 1080 | 0.59 / 0.67 = 0.88 | noComparaHits: ENSGACG00000007128 | 2 |
p6 | --- | gape | ENSP00000302836 | HOXC9 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000243108 | HOXC6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000309336 | HOXC5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000305973 | HOXC4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 70 (region 13 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l groupV -i 4547908:4610678 -f 47e3 some_geneID_to_be_selected
scoreRatio_sum=2.59 log_scoreRatio_sum=-0.44 focal_scoreRatio_sum=0.42
AlnScore=1004 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000302836 | HOXC9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000040584 | HOXC8 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000243108 | HOXC6 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | q1 | +/+ | ENSP00000309336 | HOXC5 | q1 | q1 | 126 | groupV | 4610472 | 4610666 | -1 | 1 | 29.3% | 89.2% | 195 | 0.57 / 0.73 = 0.78 | noComparaHits: ENSGACG00000003945 | 2 |
p10 | --- | gapq | ENSP00000305973 | HOXC4 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q2 | /+ | ENSP00000209875 | CBX5 | q2 | q2 | 224.8 | groupV | 4551655 | 4552726 | -1 | 4 | 82.7% | 62.7% | 465 | 0.37 / 0.44 = 0.84 | between_species_paralog: ENSGACG00000003918 | 1 |
p13 | --- | gapq | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q3 | +/+ | ENSP00000312436 | NFE2 | q3 | q3 | 182 | groupV | 4547908 | 4548918 | 1 | 1 | 72.9% | 34.1% | 1011 | 0.74 / 0.76 = 0.97 | noComparaHits: ENSGACG00000003904 | 3 |
region 71 (region 6 for Tnig)
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l 2 -i 1166951:1435728 -f 20e4 some_geneID_to_be_selected
scoreRatio_sum=3.01 log_scoreRatio_sum=-1.23 focal_scoreRatio_sum=0.63
AlnScore=991 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Tetraodon_nigroviridis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000302836 | HOXC9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000040584 | HOXC8 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q1 | +/+ | ENSP00000243108 | HOXC6 | q1 | q1 | 121 | 2 | 1435438 | 1435635 | -1 | 1 | 28.1% | 84.8% | 198 | 0.56 / 0.75 = 0.75 | between_species_paralog: GSTENG00019143001
; HOXBb6 |
2 |
p9 | q2 | +/+ | ENSP00000309336 | HOXC5 | q2 | q2 | 126 | 2 | 1432928 | 1433122 | -1 | 1 | 29.3% | 89.2% | 195 | 0.57 / 0.73 = 0.78 | noComparaHits: HOXBb5
; GSTENG00019143001 |
2 |
p10 | --- | gapq | ENSP00000305973 | HOXC4 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q3 | /+ | ENSP00000209875 | CBX5 | q3 | q3 | 110 | 2 | 1383183 | 1383641 | -1 | 1 | 59.7% | 42.9% | 459 | 0.37 / 0.72 = 0.51 | between_species_paralog: GSTENG00019151001 | 4 |
p13 | --- | gapq | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q4 | +/+ | ENSP00000312436 | NFE2 | q4 | q4 | 180 | 2 | 1379476 | 1380423 | 1 | 1 | 67.8% | 37% | 948 | 0.74 / 0.76 = 0.97 | noComparaHits: GSTENG00019152001 | 3 |
region 72 (region 4 for Mdom)
retrieve target region: getEnsemblProteins.pl -h Monodelphis_domestica -l Un -i 106218114:106223253 -f 39e2 some_geneID_to_be_selected
scoreRatio_sum=28 log_scoreRatio_sum=3.33 focal_scoreRatio_sum=9.33
AlnScore=977 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Monodelphis_domestica
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000302836 | HOXC9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000040584 | HOXC8 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q1 | +/+ | ENSP00000243108 | HOXC6 | q1 | q1 | 480 | Un | 106218114 | 106219621 | 1 | 2 | 100% | 95.9% | 723 | 0.56 / 0.02 = 28 | ortholog_one2one: HOXC6 | 1 |
p9 | --- | gape | ENSP00000309336 | HOXC5 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000305973 | HOXC4 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 73 (region 9 for Drer)
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 3 -i 24709898:24717334 -f 56e2 some_geneID_to_be_selected
scoreRatio_sum=1.79 log_scoreRatio_sum=-0.23 focal_scoreRatio_sum=0.76
AlnScore=943 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000302836 | HOXC9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q1 | +/+ | ENSP00000040584 | HOXC8 | q1 | q1 | 309 | 3 | 24715895 | 24717334 | -1 | 2 | 98.8% | 62.5% | 687 | 0.34 / 0.34 = 1 | between_species_paralog: hoxb8a | 2 |
p8 | q2 | +/+ | ENSP00000243108 | HOXC6 | q2 | q2 | 140 | 3 | 24709898 | 24710191 | -1 | 1 | 43.8% | 68% | 294 | 0.56 / 0.71 = 0.79 | noComparaHits: hoxb7a | 6 |
p9 | --- | gape | ENSP00000309336 | HOXC5 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000305973 | HOXC4 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 74 (region 4 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l Un_random -i 20045123:20048409 -f 25e2 some_geneID_to_be_selected
scoreRatio_sum=3.06 log_scoreRatio_sum=1.12 focal_scoreRatio_sum=3.06
AlnScore=829 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | q1 | +/+ | ENSP00000302836 | HOXC9 | q1 | q1 | 461 | Un_random | 20045123 | 20048409 | -1 | 2 | 99.6% | 83.5% | 783 | 0.52 / 0.17 = 3.06 | ortholog_one2one: HXD9_CHICK | 1 |
p7 | --- | gape | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000243108 | HOXC6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000309336 | HOXC5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000305973 | HOXC4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 75 (region 5 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l Un_random -i 11038119:11040351 -f 17e2 some_geneID_to_be_selected
scoreRatio_sum=2.24 log_scoreRatio_sum=0.81 focal_scoreRatio_sum=0.75
AlnScore=740 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q1 | +/+ | ENSP00000243082 | HOXC11 | q1 | q1 | 468 | Un_random | 11038119 | 11040351 | -1 | 2 | 100% | 74.1% | 918 | 0.56 / 0.25 = 2.24 | apparent_ortholog_one2one: HOXC11 | 1 |
p5 | --- | gape | ENSP00000307321 | HOXC10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000302836 | HOXC9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000243108 | HOXC6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000309336 | HOXC5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000305973 | HOXC4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 76 (region 7 for Trub)
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_346 -i 149638:226432 -f 58e3 some_geneID_to_be_selected
scoreRatio_sum=2.7 log_scoreRatio_sum=-0.33 focal_scoreRatio_sum=0.54
AlnScore=696 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Takifugu_rubripes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000262059 | CALCOCO1 | q1 | q1 | 118.2 | scaffold_346 | 149638 | 153382 | -1 | 2 | 35.2% | 31.4% | 774 | 0.94 / 0.91 = 1.03 | between_species_paralog: NEWSINFRUG00000149655 | 2 |
p2 | q2 | +/+ | ENSP00000243056 | HOXC13 | q2 | q2 | 232 | scaffold_346 | 195288 | 196163 | 1 | 2 | 44.8% | 74.7% | 450 | 0.57 / 0.64 = 0.89 | between_species_paralog: NEWSINFRUG00000162059 | 6 |
p3 | --- | gapq | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gapq | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gapq | ENSP00000307321 | HOXC10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gapq | ENSP00000302836 | HOXC9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000243108 | HOXC6 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | q3 | +/+ | ENSP00000309336 | HOXC5 | q3 | q3 | 125 | scaffold_346 | 226211 | 226405 | 1 | 1 | 29.3% | 87.7% | 195 | 0.57 / 0.73 = 0.78 | noComparaHits: NEWSINFRUG00000149630 | 3 |
p10 | --- | gape | ENSP00000305973 | HOXC4 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 77 (region 14 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_2645 -i 278:19677 -f 15e3 some_geneID_to_be_selected
scoreRatio_sum=1.65 log_scoreRatio_sum=0.5 focal_scoreRatio_sum=0.55
AlnScore=655 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q1 | +/+ | ENSP00000243082 | HOXC11 | q1 | q1 | 414 | contig_2645 | 7501 | 9754 | -1 | 2 | 100% | 65.2% | 954 | 0.56 / 0.34 = 1.65 | noComparaHits: ENSGACG00000009392 | 1 |
p5 | --- | gape | ENSP00000307321 | HOXC10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000302836 | HOXC9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000243108 | HOXC6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000309336 | HOXC5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000305973 | HOXC4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 78 (region 10 for Drer)
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 6 -i 37029814:37032288 -f 19e2 some_geneID_to_be_selected
scoreRatio_sum=1.5 log_scoreRatio_sum=0.41 focal_scoreRatio_sum=0.3
AlnScore=618 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 399 | 6 | 37029814 | 37032288 | -1 | 2 | 83% | 69.5% | 822 | 0.57 / 0.38 = 1.5 | ortholog_one2many: hoxc13b | 2 |
p3 | --- | gape | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000307321 | HOXC10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000302836 | HOXC9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000243108 | HOXC6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000309336 | HOXC5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000305973 | HOXC4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 79 (region 7 for Olat)
retrieve target region: getEnsemblProteins.pl -h Oryzias_latipes -l 15 -i 4350772:4374628 -f 18e3 some_geneID_to_be_selected
scoreRatio_sum=1.49 log_scoreRatio_sum=-0.59 focal_scoreRatio_sum=0.84
AlnScore=595 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Oryzias_latipes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | q1 | +/+ | ENSP00000302836 | HOXC9 | q1 | q1 | 132 | 15 | 4374398 | 4374607 | -1 | 1 | 26.9% | 87.1% | 210 | 0.52 / 0.76 = 0.68 | noComparaHits: Q9PVR1_ORYLA | 6 |
p7 | --- | gapq | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000243108 | HOXC6 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000309336 | HOXC5 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q2 | +/+ | ENSP00000305973 | HOXC4 | q2 | q2 | 206.4 | 15 | 4350829 | 4351949 | -1 | 2 | 84.5% | 49.3% | 666 | 0.51 / 0.63 = 0.81 | noComparaHits: Q3V5Z3_ORYLA | 5 |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 80 (region 15 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l groupVI -i 16155941:16182581 -f 20e3 some_geneID_to_be_selected
scoreRatio_sum=1.49 log_scoreRatio_sum=-0.59 focal_scoreRatio_sum=0.84
AlnScore=591 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | q1 | +/+ | ENSP00000302836 | HOXC9 | q1 | q1 | 132 | groupVI | 16162361 | 16162570 | 1 | 1 | 26.9% | 87.1% | 210 | 0.52 / 0.76 = 0.68 | noComparaHits: ENSGACG00000011902 | 6 |
p7 | --- | gapq | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000243108 | HOXC6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000309336 | HOXC5 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q2 | +/+ | ENSP00000305973 | HOXC4 | q2 | q2 | 203.9 | groupVI | 16181214 | 16182578 | 1 | 2 | 84.5% | 46.8% | 705 | 0.51 / 0.63 = 0.81 | noComparaHits: ENSGACG00000011907 | 5 |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 81 (region 6 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l Un_random -i 4242275:4245456 -f 24e2 some_geneID_to_be_selected
scoreRatio_sum=1.36 log_scoreRatio_sum=0.31 focal_scoreRatio_sum=0.27
AlnScore=579 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 374 | Un_random | 4242275 | 4245456 | 1 | 2 | 58.2% | 87.9% | 594 | 0.57 / 0.42 = 1.36 | ortholog_one2one: HOXC13 | 1 |
p3 | --- | gape | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000307321 | HOXC10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000302836 | HOXC9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000243108 | HOXC6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000309336 | HOXC5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000305973 | HOXC4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 82 (region 8 for Trub)
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_39 -i 578900:598598 -f 15e3 some_geneID_to_be_selected
scoreRatio_sum=1.46 log_scoreRatio_sum=-0.62 focal_scoreRatio_sum=0.84
AlnScore=571 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Takifugu_rubripes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | q1 | +/+ | ENSP00000302836 | HOXC9 | q1 | q1 | 130 | scaffold_39 | 584702 | 584911 | 1 | 1 | 26.9% | 85.7% | 210 | 0.52 / 0.76 = 0.68 | noComparaHits: Q4VN43_FUGRU | 6 |
p7 | --- | gapq | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000243108 | HOXC6 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000309336 | HOXC5 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q2 | +/+ | ENSP00000305973 | HOXC4 | q2 | q2 | 195 | scaffold_39 | 597373 | 598598 | 1 | 2 | 82.2% | 48% | 657 | 0.51 / 0.65 = 0.78 | noComparaHits: NEWSINFRUG00000162165 | 5 |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 83 (region 11 for Drer)
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 14 -i 27097806:27436735 -f 25e4 some_geneID_to_be_selected
scoreRatio_sum=0.02 log_scoreRatio_sum=-3.9 focal_scoreRatio_sum=0
AlnScore=567 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000302836 | HOXC9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000243108 | HOXC6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000309336 | HOXC5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000305973 | HOXC4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gaps | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | q1 | +/+ | ENSP00000341826 | HNRPA1 | q1 | q1 | 319 | 14 | 27435845 | 27436735 | 1 | 1 | 93.8% | 51.4% | 891 | 0.01 / 0.43 = 0.02 | between_species_paralog: zgc:77366 | 5 |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 84 (region 8 for Olat)
retrieve target region: getEnsemblProteins.pl -h Oryzias_latipes -l 10 -i 929283:2048891 -f 84e4 some_geneID_to_be_selected
scoreRatio_sum=0.02 log_scoreRatio_sum=-3.9 focal_scoreRatio_sum=0
AlnScore=556 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Oryzias_latipes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
--- | q1 | gaps | - | - | - | q1 | - | - | - | - | - | - | - | - | - | - | - | - |
--- | q2 | gaps | - | - | - | q2 | - | - | - | - | - | - | - | - | - | - | - | - |
--- | q3 | gaps | - | - | - | q3 | - | - | - | - | - | - | - | - | - | - | - | - |
p1 | --- | gapq | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gapq | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gapq | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gapq | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gapq | ENSP00000307321 | HOXC10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gapq | ENSP00000302836 | HOXC9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000243108 | HOXC6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000309336 | HOXC5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gapq | ENSP00000305973 | HOXC4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gapq | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | q4 | +/+ | ENSP00000341826 | HNRPA1 | q4 | q4 | 326 | 10 | 933360 | 934301 | -1 | 1 | 84.9% | 53.4% | 942 | 0.01 / 0.41 = 0.02 | between_species_paralog: ENSORLG00000000221 | 3 |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 85 (region 7 for Tnig)
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l 17 -i 9571355:9594639 -f 17e3 some_geneID_to_be_selected
scoreRatio_sum=1.44 log_scoreRatio_sum=-0.65 focal_scoreRatio_sum=0.82
AlnScore=543 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Tetraodon_nigroviridis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | q1 | +/+ | ENSP00000302836 | HOXC9 | q1 | q1 | 112 | 17 | 9576378 | 9576557 | 1 | 1 | 23.1% | 85% | 180 | 0.52 / 0.79 = 0.66 | noComparaHits: GSTENG00018723001
; HOXDb9 |
9 |
p7 | --- | gapq | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000243108 | HOXC6 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000309336 | HOXC5 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q2 | +/+ | ENSP00000305973 | HOXC4 | q2 | q2 | 197.5 | 17 | 9593474 | 9594639 | 1 | 2 | 84.1% | 46.7% | 675 | 0.51 / 0.65 = 0.78 | noComparaHits: HOXDb4
; GSTENG00018723001 |
5 |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 86 (region 16 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_9874 -i 2484:8404 -f 44e2 some_geneID_to_be_selected
scoreRatio_sum=1.55 log_scoreRatio_sum=-0.5 focal_scoreRatio_sum=0.45
AlnScore=531 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000302836 | HOXC9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000040584 | HOXC8 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q1 | +/+ | ENSP00000243108 | HOXC6 | q1 | q1 | 130 | contig_9874 | 8132 | 8404 | -1 | 1 | 38.7% | 68.1% | 273 | 0.56 / 0.73 = 0.77 | noComparaHits: ENSGACG00000005623 | 2 |
p9 | q2 | +/+ | ENSP00000309336 | HOXC5 | q2 | q2 | 125 | contig_9874 | 2514 | 2708 | -1 | 1 | 29.3% | 87.7% | 195 | 0.57 / 0.73 = 0.78 | noComparaHits: ENSGACG00000005626 | 3 |
p10 | --- | gape | ENSP00000305973 | HOXC4 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 87 (region 8 for Tnig)
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l 3 -i 679890:697538 -f 13e3 some_geneID_to_be_selected
scoreRatio_sum=1.52 log_scoreRatio_sum=-0.55 focal_scoreRatio_sum=1.1
AlnScore=520 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Tetraodon_nigroviridis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q1 | +/+ | ENSP00000307321 | HOXC10 | q1 | q1 | 207.1 | 3 | 695232 | 697538 | -1 | 2 | 59.9% | 53.7% | 639 | 0.59 / 0.7 = 0.84 | noComparaHits: GSTENG00031862001
; GSTENG00031863001 |
4 |
p6 | q2 | +/+ | ENSP00000302836 | HOXC9 | q1 | q2 | 127 | 3 | 679905 | 680132 | -1 | 1 | 29.2% | 73.7% | 228 | 0.52 / 0.77 = 0.68 | noComparaHits: GSTENG00031864001 | 7 |
p7 | --- | gape | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000243108 | HOXC6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000309336 | HOXC5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000305973 | HOXC4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 88 (region 17 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_9877 -i 4239:26330 -f 17e3 some_geneID_to_be_selected
scoreRatio_sum=1.48 log_scoreRatio_sum=-0.59 focal_scoreRatio_sum=0.97
AlnScore=519 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | q1 | +/+ | ENSP00000302836 | HOXC9 | q1 | q1 | 151 | contig_9877 | 17464 | 17757 | -1 | 1 | 37.7% | 72.4% | 294 | 0.52 / 0.72 = 0.72 | noComparaHits: | 4 |
p7 | --- | gapq | ENSP00000040584 | HOXC8 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q2 | +/+ | ENSP00000243108 | HOXC6 | q2 | q2 | 123 | contig_9877 | 4239 | 4508 | -1 | 1 | 40% | 66% | 270 | 0.56 / 0.74 = 0.76 | noComparaHits: | 3 |
p9 | --- | gape | ENSP00000309336 | HOXC5 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000305973 | HOXC4 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 89 (region 9 for Tnig)
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l 1 -i 5770251:6790581 -f 77e4 some_geneID_to_be_selected
scoreRatio_sum=0.02 log_scoreRatio_sum=-3.9 focal_scoreRatio_sum=0
AlnScore=507 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Tetraodon_nigroviridis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000302836 | HOXC9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000243108 | HOXC6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000309336 | HOXC5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000305973 | HOXC4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gaps | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | q1 | +/+ | ENSP00000341826 | HNRPA1 | q1 | q1 | 285 | 1 | 5770251 | 5771048 | 1 | 1 | 73.9% | 54.8% | 798 | 0.01 / 0.49 = 0.02 | between_species_paralog: GSTENG00014209001 | 2 |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 90 (region 9 for Trub)
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_5 -i 1978077:2416137 -f 33e4 some_geneID_to_be_selected
scoreRatio_sum=0.02 log_scoreRatio_sum=-3.9 focal_scoreRatio_sum=0
AlnScore=498 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Takifugu_rubripes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000302836 | HOXC9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000243108 | HOXC6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000309336 | HOXC5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000305973 | HOXC4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gaps | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | q1 | +/+ | ENSP00000341826 | HNRPA1 | q1 | q1 | 280 | scaffold_5 | 2411187 | 2412089 | 1 | 1 | 93.8% | 46.8% | 903 | 0.01 / 0.5 = 0.02 | between_species_paralog: NEWSINFRUG00000132772 | 3 |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 91 (region 7 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l Un_random -i 27778788:27807228 -f 21e3 some_geneID_to_be_selected
scoreRatio_sum=1.27 log_scoreRatio_sum=-0.98 focal_scoreRatio_sum=0.64
AlnScore=468 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q1 | /+ | ENSP00000307321 | HOXC10 | q1 | q1 | 191 | Un_random | 27778788 | 27779183 | -1 | 1 | 38% | 74.2% | 396 | 0.59 / 0.73 = 0.81 | noComparaHits: 430550 | 3 |
p6 | --- | gapq | ENSP00000302836 | HOXC9 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q2 | /+ | ENSP00000040584 | HOXC8 | q2 | q2 | 119 | Un_random | 27806953 | 27807210 | -1 | 1 | 36% | 66.7% | 258 | 0.34 / 0.74 = 0.46 | noComparaHits: HOXB7 | 5 |
p8 | --- | gape | ENSP00000243108 | HOXC6 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000309336 | HOXC5 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000305973 | HOXC4 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 92 (region 5 for Mmus)
retrieve target region: getEnsemblProteins.pl -h Mus_musculus -l 6 -i 83034711:83998116 -f 72e4 some_geneID_to_be_selected
scoreRatio_sum=0.02 log_scoreRatio_sum=-3.9 focal_scoreRatio_sum=0
AlnScore=446 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Mus_musculus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000302836 | HOXC9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000243108 | HOXC6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000309336 | HOXC5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000305973 | HOXC4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gaps | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | q1 | +/+ | ENSP00000341826 | HNRPA1 | q1 | q1 | 251 | 6 | 83997415 | 83998116 | 1 | 1 | 56.2% | 57.9% | 702 | 0.01 / 0.55 = 0.02 | noComparaHits: Dysf | noData |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 93 (region 12 for Drer)
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 24 -i 25215421:25218683 -f 24e2 some_geneID_to_be_selected
scoreRatio_sum=0.93 log_scoreRatio_sum=-0.06 focal_scoreRatio_sum=0.93
AlnScore=438 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | q1 | +/+ | ENSP00000302836 | HOXC9 | q1 | q1 | 244 | 24 | 25215421 | 25218674 | 1 | 2 | 67.7% | 66.8% | 552 | 0.52 / 0.56 = 0.93 | between_species_paralog: hoxb9a | 3 |
p7 | --- | gape | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000243108 | HOXC6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000309336 | HOXC5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000305973 | HOXC4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 94 (region 10 for Trub)
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_3110 -i 2081:3808 -f 13e2 some_geneID_to_be_selected
scoreRatio_sum=0.98 log_scoreRatio_sum=-0.01 focal_scoreRatio_sum=0.2
AlnScore=417 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Takifugu_rubripes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000243056 | HOXC13 | q1 | q1 | 269 | scaffold_3110 | 2081 | 3808 | 1 | 2 | 97.3% | 46.5% | 942 | 0.57 / 0.58 = 0.98 | between_species_paralog: NEWSINFRUG00000160125 | 3 |
p3 | --- | gape | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000307321 | HOXC10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000302836 | HOXC9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000243108 | HOXC6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000309336 | HOXC5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000305973 | HOXC4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 95 (region 11 for Trub)
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_3809 -i 3209:5756 -f 19e2 some_geneID_to_be_selected
scoreRatio_sum=0.9 log_scoreRatio_sum=-0.1 focal_scoreRatio_sum=0.3
AlnScore=375 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Takifugu_rubripes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000302836 | HOXC9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000040584 | HOXC8 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q1 | +/+ | ENSP00000243108 | HOXC6 | q1 | q1 | 184.6 | scaffold_3809 | 3209 | 5738 | 1 | 2 | 97.4% | 41% | 834 | 0.56 / 0.62 = 0.9 | between_species_paralog: NEWSINFRUG00000159821 | 3 |
p9 | --- | gape | ENSP00000309336 | HOXC5 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000305973 | HOXC4 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 96 (region 8 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l Un_random -i 376759:377022 -f 20e1 some_geneID_to_be_selected
scoreRatio_sum=0.73 log_scoreRatio_sum=-0.3 focal_scoreRatio_sum=0.15
AlnScore=295 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000302836 | HOXC9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000243108 | HOXC6 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000309336 | HOXC5 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q1 | +/+ | ENSP00000305973 | HOXC4 | q1 | q1 | 167 | Un_random | 376765 | 377022 | -1 | 1 | 32.6% | 88.4% | 258 | 0.51 / 0.7 = 0.73 | ortholog_one2many: HOXB4 | 2 |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 97 (region 5 for Mmul)
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 1099214175475 -i 270:614 -f 26e1 some_geneID_to_be_selected
scoreRatio_sum=0.72 log_scoreRatio_sum=-0.32 focal_scoreRatio_sum=0.72
AlnScore=276 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Macaca_mulatta
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | q1 | +/+ | ENSP00000302836 | HOXC9 | q1 | q1 | 154 | 1099214175475 | 342 | 572 | 1 | 1 | 29.6% | 93.5% | 231 | 0.52 / 0.72 = 0.72 | noComparaHits: | 4 |
p7 | --- | gape | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000243108 | HOXC6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000309336 | HOXC5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000305973 | HOXC4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 98 (region 18 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_6417 -i 33858:46196 -f 93e2 some_geneID_to_be_selected
scoreRatio_sum=0.78 log_scoreRatio_sum=-0.24 focal_scoreRatio_sum=0.2
AlnScore=269 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000302836 | HOXC9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000040584 | HOXC8 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000243108 | HOXC6 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | q1 | +/+ | ENSP00000309336 | HOXC5 | q1 | q1 | 126 | contig_6417 | 45990 | 46184 | -1 | 1 | 29.3% | 89.2% | 195 | 0.57 / 0.73 = 0.78 | noComparaHits: | 2 |
p10 | --- | gape | ENSP00000305973 | HOXC4 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 99 (region 5 for Hsap)
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 13 -i 27265687:27437126 -f 13e4 some_geneID_to_be_selected
scoreRatio_sum=0.01 log_scoreRatio_sum=-4.6 focal_scoreRatio_sum=0
AlnScore=263 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Homo_sapiens
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000302836 | HOXC9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000243108 | HOXC6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000309336 | HOXC5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000305973 | HOXC4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gaps | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | q1 | +/+ | ENSP00000341826 | HNRPA1 | q1 | q1 | 148 | 13 | 27301008 | 27301220 | 1 | 1 | 19.1% | 95.8% | 213 | 0.01 / 0.73 = 0.01 | noComparaHits: | noData |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 100 (region 12 for Trub)
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_4108 -i 5942:6196 -f 19e1 some_geneID_to_be_selected
scoreRatio_sum=0.7 log_scoreRatio_sum=-0.35 focal_scoreRatio_sum=0.7
AlnScore=253 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Takifugu_rubripes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | q1 | +/+ | ENSP00000302836 | HOXC9 | q1 | q1 | 141 | scaffold_4108 | 5951 | 6187 | 1 | 1 | 30% | 84.8% | 237 | 0.52 / 0.74 = 0.7 | noComparaHits: NEWSINFRUG00000159744 | 4 |
p7 | --- | gape | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000243108 | HOXC6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000309336 | HOXC5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000305973 | HOXC4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 101 (region 6 for Mmul)
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 17 -i 7468451:7621326 -f 11e4 some_geneID_to_be_selected
scoreRatio_sum=0.01 log_scoreRatio_sum=-4.6 focal_scoreRatio_sum=0
AlnScore=243 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Macaca_mulatta
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000302836 | HOXC9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000243108 | HOXC6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000309336 | HOXC5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000305973 | HOXC4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gaps | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | q1 | +/+ | ENSP00000341826 | HNRPA1 | q1 | q1 | 137 | 17 | 7504374 | 7504586 | 1 | 1 | 19.1% | 87.3% | 213 | 0.01 / 0.75 = 0.01 | noComparaHits: | noData |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 102 (region 19 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_4905 -i 15859:22506 -f 50e2 some_geneID_to_be_selected
scoreRatio_sum=0.68 log_scoreRatio_sum=-0.38 focal_scoreRatio_sum=0.68
AlnScore=237 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | q1 | +/+ | ENSP00000302836 | HOXC9 | q1 | q1 | 132 | contig_4905 | 15877 | 16086 | -1 | 1 | 26.9% | 87.1% | 210 | 0.52 / 0.76 = 0.68 | noComparaHits: ENSGACG00000011902 | 6 |
p7 | --- | gape | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000243108 | HOXC6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000309336 | HOXC5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000305973 | HOXC4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 103 (region 10 for Tnig)
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l Un_random -i 110113334:110113492 -f 12e1 some_geneID_to_be_selected
scoreRatio_sum=0.44 log_scoreRatio_sum=-0.81 focal_scoreRatio_sum=0.22
AlnScore=226 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Tetraodon_nigroviridis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000302836 | HOXC9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q1 | +/+ | ENSP00000040584 | HOXC8 | q1 | q1 | 106 | Un_random | 110113334 | 110113492 | 1 | 1 | 21.9% | 96.2% | 159 | 0.34 / 0.77 = 0.44 | noComparaHits: GSTENG00008821001 | 5 |
p8 | --- | gape | ENSP00000243108 | HOXC6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000309336 | HOXC5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000305973 | HOXC4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 104 (region 20 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_2644 -i 2418:2693 -f 21e1 some_geneID_to_be_selected
scoreRatio_sum=0.68 log_scoreRatio_sum=-0.38 focal_scoreRatio_sum=0.68
AlnScore=221 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | q1 | +/+ | ENSP00000302836 | HOXC9 | q1 | q1 | 123 | contig_2644 | 2436 | 2690 | -1 | 1 | 32.7% | 64.7% | 255 | 0.52 / 0.77 = 0.68 | noComparaHits: | 8 |
p7 | --- | gape | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000243108 | HOXC6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000309336 | HOXC5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000305973 | HOXC4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 105 (region 13 for Drer)
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 14 -i 3480590:4504140 -f 77e4 some_geneID_to_be_selected
scoreRatio_sum=0.01 log_scoreRatio_sum=-4.6 focal_scoreRatio_sum=0
AlnScore=209 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000302836 | HOXC9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000243108 | HOXC6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000309336 | HOXC5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000305973 | HOXC4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gaps | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | q1 | +/+ | ENSP00000341826 | HNRPA1 | q1 | q1 | 117.9 | 14 | 4503725 | 4504140 | 1 | 2 | 30.6% | 43% | 321 | 0.01 / 0.79 = 0.01 | between_species_paralog: hnrpab | 9 |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 106 (region 9 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l Un_random -i 13865410:13865634 -f 17e1 some_geneID_to_be_selected
scoreRatio_sum=0.71 log_scoreRatio_sum=-0.33 focal_scoreRatio_sum=0.24
AlnScore=207 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000302836 | HOXC9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q1 | +/+ | ENSP00000243108 | HOXC6 | q1 | q1 | 102 | Un_random | 13865410 | 13865619 | 1 | 1 | 34.5% | 65.4% | 210 | 0.56 / 0.79 = 0.71 | noComparaHits: | 8 |
p9 | --- | gape | ENSP00000309336 | HOXC5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000305973 | HOXC4 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 107 (region 6 for Mmus)
retrieve target region: getEnsemblProteins.pl -h Mus_musculus -l 2 -i 146775617:146876002 -f 75e3 some_geneID_to_be_selected
scoreRatio_sum=0.01 log_scoreRatio_sum=-4.6 focal_scoreRatio_sum=0
AlnScore=195 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Mus_musculus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000302836 | HOXC9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000243108 | HOXC6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000309336 | HOXC5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000305973 | HOXC4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gaps | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | q1 | +/+ | ENSP00000341826 | HNRPA1 | q1 | q1 | 110 | 2 | 146838084 | 146838653 | -1 | 1 | 58.3% | 36.2% | 570 | 0.01 / 0.8 = 0.01 | noComparaHits: | noData |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 108 (region 11 for Tnig)
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l 6 -i 2710876:2711259 -f 29e1 some_geneID_to_be_selected
scoreRatio_sum=0.63 log_scoreRatio_sum=-0.45 focal_scoreRatio_sum=0.13
AlnScore=180 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Tetraodon_nigroviridis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000302836 | HOXC9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000243108 | HOXC6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000309336 | HOXC5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q1 | +/+ | ENSP00000305973 | HOXC4 | q1 | q1 | 102 | 6 | 2710876 | 2711223 | -1 | 1 | 38.6% | 49.1% | 348 | 0.51 / 0.81 = 0.63 | noComparaHits: GSTENG00023870001 | noData |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 109 (region 13 for Trub)
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_95 -i 213357:213686 -f 25e1 some_geneID_to_be_selected
scoreRatio_sum=0.62 log_scoreRatio_sum=-0.47 focal_scoreRatio_sum=0.12
AlnScore=176 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000302836 (contained in p6)
TargetGenome=Takifugu_rubripes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000262059 | CALCOCO1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000243056 | HOXC13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000243103 | HOXC12 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000243082 | HOXC11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000307321 | HOXC10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000302836 | HOXC9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000040584 | HOXC8 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000243108 | HOXC6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000309336 | HOXC5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q1 | +/+ | ENSP00000305973 | HOXC4 | q1 | q1 | 100 | scaffold_95 | 213384 | 213686 | 1 | 1 | 37.5% | 53.4% | 303 | 0.51 / 0.82 = 0.62 | noComparaHits: NEWSINFRUG00000149044 | noData |
p11 | --- | gape | ENSP00000338606 | SMUG1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000209875 | CBX5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000341826 | HNRPA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000312436 | NFE2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |