Overview on processed synteny regions for HOXA9_ENSG00000078399_5e5.protein.info
Rank | AlnOverview | AlnScore | RatioSum | logRatioSum | focalRatioSum | TargetGenome | chr | startPos | endPos | hitsCount | queryCov | meanIdentity | ori | score | compara |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | 17000 | 1053 | 69.29 | 277.17 | Homo_sapiens | 7 | 27169750 | 27171601 | 2 | 100% | 99.3% | -1 | 576 | within_species_paralog: HOXA9 | |
2 | 12923 | 459.68 | 39.03 | 129.09 | Macaca_mulatta | 3 | 99059984 | 99061847 | 2 | 100% | 98.5% | 1 | 572 | ortholog_one2one: HOXA9 | |
3 | 12736 | 310.21 | 36.2 | 90.11 | Mus_musculus | 6 | 52153830 | 52155687 | 2 | 100% | 97.4% | -1 | 561 | ortholog_one2one: Hoxa9 | |
4 | 11893 | 176.84 | 26.62 | 61.03 | Canis_familiaris | 14 | 43293507 | 43295428 | 2 | 100% | 97.4% | -1 | 564 | ortholog_one2one: 482372 | |
5 | 10929 | 70.49 | 18.72 | 16.51 | Monodelphis_domestica | 8 | 293276346 | 293276969 | 1 | 77.9% | 63.8% | 1 | 251 | ortholog_one2one: HOXA9 | |
6 | 9118 | 29.81 | 9.35 | 8.22 | Xenopus_tropicalis | scaffold_56 | 1415310 | 1416635 | 2 | 100% | 68.2% | 1 | 382 | noComparaHits: ENSXETG00000000724 | |
7 | 7735 | 28.74 | 7.02 | 8.26 | Gallus_gallus | 2 | 32579719 | 32581455 | 2 | 100% | 71.2% | -1 | 398 | ortholog_one2one: HXA9_CHICK | |
8 | 6577 | 17.3 | 3.84 | 4.79 | Oryzias_latipes | 11 | 10539576 | 10540702 | 2 | 100% | 54.9% | -1 | 274 | noComparaHits: Q9PTV6_ORYLA | |
9 | 6508 | 16.94 | 3.65 | 4.72 | Gasterosteus_aculeatus | groupX | 9901359 | 9902621 | 2 | 70.6% | 62.5% | -1 | 236.1 | ortholog_one2many: ENSGACG00000007123 | |
10 | 5933 | 115.35 | 15.23 | 22.77 | Bos_taurus | 4 | |||||||||
11 | 5915 | 14.65 | 2.95 | 4 | Tetraodon_nigroviridis | 21 | 3012226 | 3013378 | 2 | 100% | 55.2% | 1 | 280 | ortholog_one2many: HOXA9
; GSTENG00017478001 |
|
12 | 5201 | 162.1 | 14.53 | 84.14 | Bos_taurus | 4 | 40177480 | 40179376 | 2 | 100% | 95% | 1 | 565 | ortholog_one2one: HOXA9 | |
13 | 4687 | 13.1 | 1.55 | 3.02 | Danio_rerio | 19 | 13917752 | 13917991 | 1 | 29.4% | 85% | 1 | 148 | ortholog_one2many: hoxa9a | |
14 | 4511 | 10.9 | 1.44 | 3.24 | Takifugu_rubripes | scaffold_12 | 2360015 | 2361166 | 2 | 100% | 52.7% | -1 | 273 | ortholog_one2many: HXA9_FUGRU | |
15 | 4373 | 10.8 | -0.3 | 3.46 | Danio_rerio | 3 | 23019694 | 23022949 | 2 | 97.8% | 48% | -1 | 226.6 | between_species_paralog: hoxb9a | |
16 | 3874 | 11.92 | 3.15 | 3.26 | Danio_rerio | 16 | 21188212 | 21189738 | 2 | 99.6% | 48.9% | 1 | 240.1 | ortholog_one2many: hoxa9b | |
17 | 3848 | 9.28 | 0.17 | 3.05 | Mus_musculus | 11 | 96087632 | 96090946 | 2 | 69.5% | 57.1% | 1 | 222.1 | between_species_paralog: Hoxb9 | |
18 | 3790 | 9.22 | 0.07 | 2.91 | Monodelphis_domestica | 2 | 201204822 | 201205052 | 1 | 28.3% | 87% | -1 | 147 | between_species_paralog: HOXB9 | |
19 | 3728 | 8.91 | -0.08 | 2.84 | Homo_sapiens | 17 | 44055264 | 44058630 | 2 | 91.9% | 48.4% | -1 | 228.6 | within_species_paralog: HOXB9 | |
20 | 3605 | 9.01 | -1.14 | 2.69 | Takifugu_rubripes | scaffold_41 | 540964 | 541197 | 1 | 28.7% | 85.9% | 1 | 144 | noComparaHits: NEWSINFRUG00000160069 | |
21 | 3470 | 8.77 | -0.24 | 3.17 | Xenopus_tropicalis | scaffold_163 | 619622 | 620793 | 2 | 98.5% | 50% | -1 | 242 | between_species_paralog: HOXD9 | |
22 | 3430 | 8.85 | -1.35 | 2.68 | Gasterosteus_aculeatus | groupXI | 1626146 | 1626442 | 1 | 34.6% | 73.7% | 1 | 150 | noComparaHits: | |
23 | 3414 | 8.66 | 1.23 | 2.48 | Gasterosteus_aculeatus | contig_2344 | 65911 | 66165 | 1 | 31.3% | 83.5% | -1 | 151 | noComparaHits: | |
24 | 3356 | 11.61 | 2.25 | 3 | Gasterosteus_aculeatus | contig_1095 | 42380 | 43568 | 2 | 92.6% | 44.5% | 1 | 208 | noComparaHits: ENSGACG00000008310 | |
25 | 3356 | 11.61 | 2.25 | 3 | Gasterosteus_aculeatus | groupXX | 9726620 | 9727808 | 2 | 92.6% | 44.5% | 1 | 208 | ortholog_one2many: ENSGACG00000008310 | |
26 | 3342 | 8.05 | -1.07 | 3.27 | Xenopus_tropicalis | scaffold_226 | 388156 | 390492 | 2 | 100% | 50.2% | 1 | 249 | noComparaHits: hoxc9 | |
27 | 3338 | 8.33 | -0.73 | 2.77 | Macaca_mulatta | 16 | 32852655 | 32856017 | 2 | 91.9% | 48.8% | -1 | 231.7 | between_species_paralog: HOXB9 | |
28 | 3304 | 8.49 | -0.54 | 3.08 | Monodelphis_domestica | 4 | 187464529 | 187465934 | 2 | 70.2% | 61.3% | 1 | 228 | between_species_paralog: HOXD9 | |
29 | 3297 | 8.33 | -0.79 | 2.73 | Canis_familiaris | 9 | 28212641 | 28216111 | 2 | 91.9% | 48.8% | -1 | 231 | between_species_paralog: 608958 | |
30 | 3251 | 8.45 | -0.6 | 3.09 | Mus_musculus | 2 | 74498895 | 74500242 | 2 | 78.7% | 55.6% | 1 | 237.6 | between_species_paralog: Hoxd9 | |
31 | 3220 | 10.04 | 1.78 | 2.63 | Takifugu_rubripes | scaffold_48 | 1063099 | 1063347 | 1 | 30.5% | 83.1% | -1 | 150 | ortholog_one2many: NEWSINFRUG00000138062 | |
32 | 3211 | 8.37 | -0.73 | 2.78 | Xenopus_tropicalis | scaffold_334 | 579373 | 579603 | 1 | 28.3% | 89.6% | -1 | 150 | between_species_paralog: HOXB9 | |
33 | 3198 | 10.53 | 1.76 | 2.76 | Tetraodon_nigroviridis | 8 | 6620992 | 6621225 | 1 | 28.7% | 84.6% | 1 | 144 | ortholog_one2many: HOXAb9 | |
34 | 3197 | 8.59 | -1.67 | 3.32 | Danio_rerio | 23 | 35676857 | 35678677 | 2 | 98.5% | 49.6% | 1 | 255 | between_species_paralog: hoxc9a | |
35 | 3189 | 8.36 | -0.74 | 3.02 | Homo_sapiens | 2 | 176695773 | 176697131 | 2 | 78.7% | 53.9% | 1 | 232.9 | within_species_paralog: HOXD9 | |
36 | 3184 | 10.27 | 1.7 | 2.86 | Oryzias_latipes | 16 | 13130864 | 13131804 | 2 | 96.7% | 47.5% | 1 | 221.6 | ortholog_one2one: Q3V626_ORYLA | |
37 | 3129 | 7.84 | -1.38 | 2.15 | Tetraodon_nigroviridis | Un_random | 38140058 | 38140288 | 1 | 28.3% | 85.7% | -1 | 142 | noComparaHits: GSTENG00020456001 | |
38 | 3120 | 7.72 | -1.46 | 2.16 | Oryzias_latipes | 8 | 24318538 | 24318771 | 1 | 28.7% | 84.6% | 1 | 143 | between_species_paralog: Q3V615_ORYLA | |
39 | 3087 | 8.3 | -1.05 | 2.68 | Bos_taurus | 19 | 31239435 | 31239665 | 1 | 28.3% | 87% | -1 | 147 | between_species_paralog: HOXB9 | |
40 | 2878 | 7.83 | -1.38 | 3.16 | Gasterosteus_aculeatus | groupXII | 11616265 | 11618032 | 2 | 98.5% | 50.9% | 1 | 257 | between_species_paralog: ENSGACG00000009396 | |
41 | 2841 | 6.89 | -0.13 | 2.9 | Danio_rerio | 9 | 1580192 | 1581290 | 2 | 100% | 48.7% | -1 | 251 | between_species_paralog: hoxd9a | |
42 | 2809 | 7.39 | -0.66 | 2.06 | Macaca_mulatta | 12 | |||||||||
43 | 2771 | 7.47 | -0.57 | 2.76 | Bos_taurus | 2 | 16998559 | 16999927 | 2 | 70.6% | 61.7% | -1 | 236 | between_species_paralog: HOXD9 | |
44 | 2746 | 6.99 | -1.15 | 3.08 | Mus_musculus | 15 | 102809687 | 102812164 | 2 | 100% | 48.8% | 1 | 250.6 | between_species_paralog: Hoxc9 | |
45 | 2743 | 6.99 | -1.15 | 3.08 | Homo_sapiens | 12 | 52680240 | 52682716 | 2 | 100% | 48.6% | 1 | 250 | within_species_paralog: HOXC9 | |
46 | 2738 | 7.06 | -1.12 | 3.06 | Tetraodon_nigroviridis | 9 | 4222544 | 4224247 | 2 | 98.5% | 48.8% | 1 | 248 | between_species_paralog: HOXC9
; GSTENG00028039001 |
|
47 | 2725 | 7.05 | -1.14 | 3.1 | Oryzias_latipes | 7 | 12875582 | 12877188 | 2 | 100% | 51.1% | 1 | 262 | between_species_paralog: HXC9_ORYLA | |
48 | 2687 | 6.99 | -1.2 | 3.08 | Takifugu_rubripes | scaffold_66 | 154997 | 156667 | 2 | 98.5% | 50.2% | -1 | 260 | between_species_paralog: HXC9_FUGRU | |
49 | 2613 | 7.57 | -1.63 | 2.71 | Canis_familiaris | 36 | 22958837 | 22959100 | 1 | 29.4% | 80.7% | 1 | 151 | noComparaHits: ENSCAFG00000023404 | |
50 | 2477 | 5.85 | -0.15 | 2.57 | Gasterosteus_aculeatus | contig_5303 | 254138 | 255336 | 2 | 89% | 50% | 1 | 223.6 | noComparaHits: Q4VQD4_GASAC | |
51 | 2477 | 5.85 | -0.15 | 2.57 | Gasterosteus_aculeatus | groupXVI | 9814144 | 9815342 | 2 | 89% | 50% | -1 | 223.6 | between_species_paralog: Q4VQD4_GASAC | |
52 | 2461 | 5.84 | -0.15 | 2.62 | Takifugu_rubripes | scaffold_100 | 358383 | 359535 | 2 | 100% | 45.8% | -1 | 238.4 | between_species_paralog: NEWSINFRUG00000124776 | |
53 | 2405 | 6.02 | -1.12 | 2.6 | Bos_taurus | 5 | 16811872 | 16814511 | 2 | 100% | 49.1% | -1 | 249.6 | between_species_paralog: HOXC9 | |
54 | 2379 | 6.91 | 1.81 | 1.32 | Takifugu_rubripes | scaffold_346 | |||||||||
55 | 2361 | 5.66 | -0.35 | 2.56 | Oryzias_latipes | 21 | 24614922 | 24616108 | 2 | 100% | 47.2% | 1 | 245 | between_species_paralog: HXD9_ORYLA | |
56 | 2296 | 5.58 | -0.44 | 2.55 | Tetraodon_nigroviridis | 2 | 11097817 | 11098947 | 2 | 82.4% | 53.1% | -1 | 232.2 | between_species_paralog: GSTENG00031462001 | |
57 | 2290 | 6.13 | -0.97 | 2.01 | Gallus_gallus | 27 | 3567989 | 3568219 | 1 | 28.3% | 87% | 1 | 146 | between_species_paralog: HOXB9 | |
58 | 2268 | 6.17 | -0.91 | 2.85 | Macaca_mulatta | 11 | 51098616 | 51101083 | 2 | 100% | 49% | 1 | 251 | between_species_paralog: HOXC9 | |
59 | 2232 | 5.85 | -1.3 | 2.04 | Canis_familiaris | 27 | |||||||||
60 | 2133 | 4.95 | -0.07 | 2.28 | Danio_rerio | 2 | 12067416 | 12068514 | 2 | 100% | 48.7% | -1 | 251 | between_species_paralog: hoxd9a | |
61 | 1868 | 5.17 | 0.11 | 1.26 | Danio_rerio | 12 | |||||||||
62 | 1803 | 5.57 | -1.67 | 1.4 | Gallus_gallus | 7 | |||||||||
63 | 1800 | 4.81 | -0.36 | 0.86 | Takifugu_rubripes | scaffold_130 | |||||||||
64 | 1725 | 4.67 | -0.47 | 0.84 | Oryzias_latipes | 19 | |||||||||
65 | 1646 | 3.84 | 0.73 | 1.35 | Gasterosteus_aculeatus | contig_2345 | |||||||||
66 | 1601 | 4.51 | -0.62 | 0.83 | Tetraodon_nigroviridis | 2 | |||||||||
67 | 1566 | 4.22 | -0.94 | 2.09 | Gasterosteus_aculeatus | contig_2643 | 45188 | 46955 | 2 | 98.5% | 50.9% | -1 | 257 | noComparaHits: ENSGACG00000009396 | |
68 | 1139 | 3.56 | -0.62 | 0.49 | Gasterosteus_aculeatus | contig_6417 | |||||||||
69 | 1139 | 3.56 | -0.62 | 0.49 | Gasterosteus_aculeatus | groupV | |||||||||
70 | 986 | 2.65 | -0.37 | 0.33 | Gasterosteus_aculeatus | contig_9872 | |||||||||
71 | 855 | 1.76 | -0.25 | 0.59 | Danio_rerio | 11 | |||||||||
72 | 795 | 1.55 | -0.51 | 0.44 | Gasterosteus_aculeatus | contig_9874 | |||||||||
73 | 631 | 2.21 | 0.14 | 1.11 | Gallus_gallus | Un_random | |||||||||
74 | 627 | 1.17 | -1.06 | 0.14 | Mus_musculus | 5 | |||||||||
75 | 526 | 1.76 | -0.26 | 1.27 | Gasterosteus_aculeatus | contig_9877 | 17455 | 17751 | 1 | 34.6% | 73.7% | -1 | 150 | noComparaHits: | |
76 | 520 | 0.98 | -0.01 | 0.33 | Gallus_gallus | Un_random | |||||||||
77 | 509 | 1.18 | 0.17 | 0.3 | Takifugu_rubripes | scaffold_3110 | |||||||||
78 | 508 | 1.04 | -1.32 | 0.13 | Gallus_gallus | 1 | |||||||||
79 | 480 | 1.08 | -1.28 | 0.12 | Xenopus_tropicalis | scaffold_80 | |||||||||
80 | 475 | 0.48 | -0.72 | 0.05 | Mus_musculus | 6 | |||||||||
81 | 467 | 1.69 | -0.34 | 1.21 | Takifugu_rubripes | scaffold_39 | 584690 | 584911 | 1 | 27.2% | 83.8% | 1 | 135 | noComparaHits: Q4VN43_FUGRU | |
82 | 466 | 1.69 | -0.34 | 1.22 | Gasterosteus_aculeatus | groupVI | 16162334 | 16162570 | 1 | 28.3% | 82.3% | 1 | 139 | noComparaHits: ENSGACG00000011902 | |
83 | 465 | 1.69 | -0.34 | 1.21 | Oryzias_latipes | 15 | 4374398 | 4374607 | 1 | 25.7% | 88.6% | -1 | 135 | noComparaHits: Q9PVR1_ORYLA | |
84 | 439 | 1 | 0 | 1 | Gallus_gallus | Un_random | 20045126 | 20048409 | 2 | 100% | 49.8% | -1 | 253 | between_species_paralog: HXD9_CHICK | |
85 | 432 | 0.87 | -0.13 | 0.29 | Takifugu_rubripes | scaffold_3809 | |||||||||
86 | 428 | 0.86 | -0.14 | 0.29 | Monodelphis_domestica | Un | |||||||||
87 | 428 | 0.44 | -0.81 | 0.04 | Mus_musculus | 7 | |||||||||
88 | 426 | 1.64 | -0.41 | 1.17 | Tetraodon_nigroviridis | 17 | 9576378 | 9576557 | 1 | 22.1% | 86.7% | 1 | 115 | noComparaHits: GSTENG00018723001
; HOXDb9 |
|
89 | 415 | 1.53 | -0.53 | 1.13 | Tetraodon_nigroviridis | 3 | 679911 | 680132 | 1 | 27.2% | 74.3% | -1 | 124 | noComparaHits: GSTENG00031864001 | |
90 | 393 | 0.93 | -0.06 | 0.93 | Danio_rerio | 24 | 25215421 | 25218683 | 2 | 97.8% | 48% | 1 | 226.6 | between_species_paralog: hoxb9a | |
91 | 385 | 0.95 | -0.04 | 0.24 | Danio_rerio | 6 | |||||||||
92 | 375 | 0.94 | -0.05 | 0.24 | Gallus_gallus | Un_random | |||||||||
93 | 363 | 0.4 | -0.91 | 0.04 | Mus_musculus | 19 | |||||||||
94 | 360 | 0.4 | -0.91 | 0.04 | Mus_musculus | 11 | |||||||||
95 | 338 | 0.38 | -0.96 | 0.04 | Mus_musculus | 1 | |||||||||
96 | 330 | 0.95 | -0.04 | 0.19 | Gasterosteus_aculeatus | contig_9873 | |||||||||
97 | 314 | 0.37 | -0.98 | 0.04 | Monodelphis_domestica | 8 | |||||||||
98 | 258 | 0.76 | -0.26 | 0.76 | Macaca_mulatta | 1099214175475 | 327 | 563 | 1 | 29% | 86.1% | 1 | 149 | noComparaHits: | |
99 | 250 | 0.75 | -0.28 | 0.75 | Takifugu_rubripes | scaffold_4108 | 5963 | 6196 | 1 | 28.7% | 85.9% | 1 | 144 | noComparaHits: NEWSINFRUG00000159744 | |
100 | 242 | 0.84 | -0.16 | 0.17 | Gallus_gallus | Un_random | |||||||||
101 | 241 | 0.75 | -0.28 | 0.75 | Gasterosteus_aculeatus | contig_4905 | 15877 | 16113 | 1 | 28.3% | 82.3% | -1 | 139 | noComparaHits: ENSGACG00000011902 | |
102 | 233 | 0.67 | -0.39 | 0.1 | Tetraodon_nigroviridis | Un_random | |||||||||
103 | 230 | 0.64 | -0.44 | 0.21 | Gallus_gallus | Un_random | |||||||||
104 | 225 | 0.94 | -0.05 | 0.47 | Gasterosteus_aculeatus | contig_4903 | |||||||||
105 | 210 | 0.72 | -0.32 | 0.72 | Gasterosteus_aculeatus | contig_2644 | 2457 | 2663 | 1 | 25.4% | 76.8% | -1 | 121 | noComparaHits: | |
106 | 131 | 0.59 | -0.52 | 0.08 | Bos_taurus | 12 | |||||||||
107 | 126 | 0.59 | -0.52 | 0.08 | Canis_familiaris | 25 | |||||||||
108 | 126 | 0.59 | -0.52 | 0.08 | Monodelphis_domestica | 4 | |||||||||
109 | 123 | 0.59 | -0.52 | 0.08 | Homo_sapiens | 13 | |||||||||
110 | 120 | 0.59 | -0.52 | 0.08 | Macaca_mulatta | 17 | |||||||||
111 | 118 | 0.58 | -0.53 | 0.08 | Oryzias_latipes | 20 |
Data table for reference protein loci
QueryProtein(s)=ENSP00000343619 (contained in p11)QueryGenome=Homo_sapiens
ref-loci | geneName | protID | transID | geneID | protName | chr | startPos | endPos | meanPos | ori | numExons | protLength | selfscore |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | SKAP2 | ENSP00000005587 | ENST00000345317 | ENSG00000005020 | NP_003921.2 | 7 | 26676244 | 26870573 | 26733074 | -1 | 12 | 359 | 681.9 |
p2 | - | ENSP00000328286 | ENST00000333401 | ENSG00000184579 | - | 7 | 26988911 | 26989532 | 26989233 | -1 | 2 | 198 | 366.1 |
p3 | HOXA1 | ENSP00000343246 | ENST00000343060 | ENSG00000105991 | HXA1_HUMAN | 7 | 27100584 | 27102056 | 27101547 | -1 | 2 | 335 | 671 |
p4 | HOXA2 | ENSP00000222718 | ENST00000222718 | ENSG00000105996 | HXA2_HUMAN | 7 | 27106870 | 27108644 | 27107431 | -1 | 2 | 376 | 736 |
p5 | HOXA3 | ENSP00000324884 | ENST00000317201 | ENSG00000105997 | HXA3_HUMAN | 7 | 27114059 | 27116784 | 27114719 | -1 | 2 | 443 | 844 |
p6 | Q96MZ3_HUMAN | ENSP00000297027 | ENST00000297027 | ENSG00000164519 | Q96MZ3_HUMAN | 7 | 27122158 | 27128119 | 27122347 | 1 | 2 | 128 | 226 |
p7 | HOXA4 | ENSP00000353151 | ENST00000360046 | ENSG00000197576 | HXA4_HUMAN | 7 | 27135369 | 27136877 | 27136392 | -1 | 2 | 320 | 684 |
p8 | HOXA5 | ENSP00000222726 | ENST00000222726 | ENSG00000106004 | HXA5_HUMAN | 7 | 27147979 | 27149751 | 27149341 | -1 | 2 | 270 | 563 |
p9 | HOXA6 | ENSP00000222728 | ENST00000222728 | ENSG00000106006 | HXA6_HUMAN | 7 | 27151802 | 27153893 | 27153537 | -1 | 2 | 233 | 500 |
p10 | HOXA7 | ENSP00000242159 | ENST00000242159 | ENSG00000122592 | HXA7_HUMAN | 7 | 27161053 | 27162689 | 27162339 | -1 | 2 | 230 | 484 |
p11 | HOXA9 | ENSP00000343619 | ENST00000343483 | ENSG00000078399 | HXA9_HUMAN | 7 | 27169747 | 27171601 | 27171188 | -1 | 2 | 272 | 576 |
p12 | HOXA10 | ENSP00000283921 | ENST00000283921 | ENSG00000153807 | HXA10_HUMAN | 7 | 27178043 | 27180399 | 27179803 | -1 | 2 | 393 | 727 |
p13 | HOXA11 | ENSP00000006015 | ENST00000006015 | ENSG00000005073 | HXA11_HUMAN | 7 | 27188940 | 27191288 | 27190812 | -1 | 2 | 313 | 553 |
p14 | HOXA13 | ENSP00000222753 | ENST00000222753 | ENSG00000106031 | HXA13_HUMAN | 7 | 27204342 | 27206221 | 27205634 | -1 | 2 | 388 | 640 |
p15 | EVX1 | ENSP00000222761 | ENST00000222761 | ENSG00000106038 | EVX1_HUMAN | 7 | 27249175 | 27252569 | 27251371 | 1 | 3 | 407 | 638 |
p16 | - | ENSP00000322111 | ENST00000313812 | ENSG00000177093 | - | 7 | 27464307 | 27464999 | 27464649 | -1 | 1 | 230 | 473 |
p17 | HIBADH | ENSP00000265395 | ENST00000265395 | ENSG00000106049 | 3HIDH_HUMAN | 7 | 27532358 | 27668932 | 27549219 | -1 | 8 | 336 | 707.1 |
Parameter used for the loci-alignments
qLoci-Score_CutOff: 100 bitsqLoci-MaxProtOverlap: 40 aa
loci size factor: 2 (additional loci size constraint: 0 nt)
loci-grouping type: loci intervalls
max distance between non-highlighted (orange) target columns: 500000 nt
RelativeScore color index:
<= 33 | <= 66 | <= 100 | <= 133 | <= 166 | <= 200 | <= 233 | <= 266 | <= 300 | <= 333 | <= 366 | <= 400 | <= 433 | <= 466 | <= 500 | <= 533 | <= 566 | <= 600 | <= 633 | <= 666 | <= 700 | <= 733 | <= 766 | <= 800 | <= 833 | <= 866 | <= 900 | <= 933 | <= 966 | <= 1000 | relSc>1000 |
<= 33 | <= 66 | <= 100 | <= 133 | <= 166 | <= 200 | <= 233 | <= 266 | <= 300 | <= 333 | <= 366 | <= 400 | <= 433 | <= 466 | <= 500 | <= 533 | <= 566 | <= 600 | <= 633 | <= 666 | <= 700 | <= 733 | <= 766 | <= 800 | <= 833 | <= 866 | <= 900 | <= 933 | <= 966 | <= 1000 | relSc>1000 |
region 1 (region 1 for Hsap)
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 7 -i 26676247:27668932 -f 74e4 some_geneID_to_be_selected
scoreRatio_sum=1053 log_scoreRatio_sum=69.29 focal_scoreRatio_sum=277.17
AlnScore=17000 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Homo_sapiens
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000005587 | SKAP2 | q1 | q1 | 681.9 | 7 | 26676247 | 26861035 | -1 | 9 | 85.8% | 98.7% | 942 | 0.91 / 0.01 = 91 | within_species_paralog: SKAP2 | 1 |
p2 | q2 | +/+ | ENSP00000328286 | - | q2 | q2 | 366.1 | 7 | 26988974 | 26989532 | -1 | 2 | 89.4% | 99.4% | 531 | 0.25 / 0.01 = 25 | within_species_paralog: ENSG00000184579 | 1 |
p3 | q3 | +/+ | ENSP00000343246 | HOXA1 | q3 | q3 | 671 | 7 | 27100587 | 27102056 | -1 | 2 | 100% | 96.1% | 1011 | 0.67 / 0.01 = 67 | within_species_paralog: HOXA1 | 1 |
p4 | q4 | +/+ | ENSP00000222718 | HOXA2 | q4 | q4 | 736 | 7 | 27106873 | 27108644 | -1 | 2 | 100% | 94.8% | 1155 | 0.58 / 0.01 = 58 | within_species_paralog: HOXA2 | 1 |
p5 | q5 | +/+ | ENSP00000324884 | HOXA3 | q5 | q5 | 844 | 7 | 27114062 | 27116784 | -1 | 2 | 100% | 87.9% | 1389 | 0.51 / 0.01 = 51 | within_species_paralog: HOXA3 | 1 |
p6 | q6 | +/+ | ENSP00000297027 | Q96MZ3_HUMAN | q6 | q6 | 226 | 7 | 27122158 | 27122541 | 1 | 1 | 97.7% | 89.1% | 384 | 1 / 0.01 = 100 | noComparaHits: HOXA3
; Q96MZ3_HUMAN |
1 |
p7 | q7 | +/+ | ENSP00000353151 | HOXA4 | q7 | q7 | 684 | 7 | 27135372 | 27136877 | -1 | 2 | 100% | 99.7% | 963 | 0.63 / 0.01 = 63 | within_species_paralog: HOXA4 | 1 |
p8 | q8 | +/+ | ENSP00000222726 | HOXA5 | q8 | q8 | 563 | 7 | 27147982 | 27149751 | -1 | 2 | 100% | 100% | 810 | 0.42 / 0.01 = 42 | within_species_paralog: HOXA5 | 1 |
p9 | q9 | +/+ | ENSP00000222728 | HOXA6 | q9 | q9 | 500 | 7 | 27151805 | 27153893 | -1 | 2 | 100% | 94.8% | 756 | 0.49 / 0.01 = 49 | within_species_paralog: HOXA6 | 1 |
p10 | q10 | +/+ | ENSP00000242159 | HOXA7 | q10 | q10 | 484 | 7 | 27161056 | 27162689 | -1 | 2 | 100% | 100% | 696 | 0.72 / 0.01 = 72 | within_species_paralog: HOXA7 | 1 |
p11 | q11 | +/+ | ENSP00000343619 | HOXA9 | q11 | q11 | 576 | 7 | 27169750 | 27171601 | -1 | 2 | 100% | 99.3% | 819 | 0.56 / 0.01 = 56 | within_species_paralog: HOXA9 | 1 |
p12 | q12 | +/+ | ENSP00000283921 | HOXA10 | q12 | q12 | 727 | 7 | 27178046 | 27180399 | -1 | 2 | 100% | 90.4% | 1182 | 0.64 / 0.01 = 64 | within_species_paralog: HOXA10 | 1 |
p13 | q13 | +/+ | ENSP00000006015 | HOXA11 | q13 | q13 | 553 | 7 | 27188943 | 27191288 | -1 | 2 | 100% | 83.4% | 987 | 0.46 / 0.01 = 46 | within_species_paralog: HOXA11 | 1 |
p14 | q14 | +/+ | ENSP00000222753 | HOXA13 | q14 | q14 | 640 | 7 | 27204345 | 27206221 | -1 | 2 | 100% | 81% | 1170 | 0.58 / 0.01 = 58 | within_species_paralog: HOXA13 | 1 |
p15 | q15 | +/+ | ENSP00000222761 | EVX1 | q15 | q15 | 638 | 7 | 27249175 | 27252566 | 1 | 2 | 81.6% | 93.1% | 996 | 0.51 / 0.01 = 51 | within_species_paralog: EVX1 | 1 |
p16 | q16 | +/+ | ENSP00000322111 | - | q16 | q16 | 473 | 7 | 27464310 | 27464999 | -1 | 1 | 100% | 100% | 690 | 0.6 / 0.01 = 60 | within_species_paralog: ENSG00000177093 | 1 |
p17 | q17 | +/+ | ENSP00000265395 | HIBADH | q17 | q17 | 707.1 | 7 | 27532361 | 27668932 | -1 | 8 | 100% | 97.7% | 1053 | 1 / 0.01 = 100 | noComparaHits: ENSG00000203508
; HIBADH |
1 |
region 2 (region 1 for Mmul)
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 3 -i 98565502:99558122 -f 74e4 some_geneID_to_be_selected
scoreRatio_sum=459.68 log_scoreRatio_sum=39.03 focal_scoreRatio_sum=129.09
AlnScore=12923 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Macaca_mulatta
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000005587 | SKAP2 | q1 | q1 | 674.7 | 3 | 99370099 | 99558122 | 1 | 9 | 85.8% | 96.8% | 945 | 0.91 / 0.01 = 91 | ortholog_one2one: SKAP2 | 1 |
p2 | q2 | +/+ | ENSP00000328286 | - | q2 | q2 | 186 | 3 | 99238479 | 99239027 | 1 | 1 | 87.9% | 57.1% | 549 | 0.25 / 0.49 = 0.51 | noComparaHits: | noData |
p3 | q3 | +/+ | ENSP00000343246 | HOXA1 | q3 | q3 | 666 | 3 | 99130112 | 99131580 | 1 | 2 | 100% | 95.5% | 1011 | 0.67 / 0.01 = 67 | ortholog_one2one: HOXA1 | 1 |
p4 | q4 | +/+ | ENSP00000222718 | HOXA2 | q4 | q4 | 693 | 3 | 99123521 | 99125286 | 1 | 2 | 100% | 89.9% | 1149 | 0.58 / 0.05 = 11.6 | ortholog_one2one: HOXA2 | 1 |
p5 | q5 | +/+ | ENSP00000324884 | HOXA3 | q5 | q5 | 844 | 3 | 99115329 | 99118052 | 1 | 2 | 100% | 88.4% | 1374 | 0.51 / 0.01 = 51 | ortholog_one2one: HOXA3 | 1 |
p6 | q6 | +/+ | ENSP00000297027 | Q96MZ3_HUMAN | q6 | q6 | 173.8 | 3 | 99109613 | 99109995 | -1 | 2 | 80.5% | 79.2% | 318 | 1 / 0.23 = 4.35 | noComparaHits: HOXA3 | 1 |
p7 | --- | gapq | ENSP00000353151 | HOXA4 | q7 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q7 | +/+ | ENSP00000222726 | HOXA5 | q7 | q7 | 559 | 3 | 99082328 | 99084105 | 1 | 2 | 100% | 99.3% | 810 | 0.42 / 0.01 = 42 | ortholog_one2one: HOXA5 | 1 |
p9 | q8 | +/+ | ENSP00000222728 | HOXA6 | q8 | q8 | 496 | 3 | 99078244 | 99080293 | 1 | 2 | 100% | 94% | 756 | 0.49 / 0.01 = 49 | ortholog_one2one: HOXA6 | 1 |
p10 | q9 | +/+ | ENSP00000242159 | HOXA7 | q9 | q9 | 439 | 3 | 99068833 | 99070407 | 1 | 2 | 92.6% | 97.7% | 645 | 0.72 / 0.09 = 8 | ortholog_one2one: HOXA7 | 1 |
p11 | q10 | +/+ | ENSP00000343619 | HOXA9 | q10 | q10 | 572 | 3 | 99059984 | 99061847 | 1 | 2 | 100% | 98.5% | 819 | 0.56 / 0.01 = 56 | ortholog_one2one: HOXA9 | 1 |
p12 | q11 | +/+ | ENSP00000283921 | HOXA10 | q11 | q11 | 388 | 3 | 99051648 | 99053396 | 1 | 2 | 48.6% | 98.4% | 576 | 0.64 / 0.46 = 1.39 | ortholog_one2one: HOXA10 | 1 |
p13 | q12 | +/+ | ENSP00000006015 | HOXA11 | q12 | q12 | 526 | 3 | 99039977 | 99042320 | 1 | 2 | 100% | 84.1% | 936 | 0.46 / 0.04 = 11.5 | ortholog_one2one: HOXA11 | 1 |
p14 | q13 | +/+ | ENSP00000222753 | HOXA13 | q13 | q13 | 277 | 3 | 99025864 | 99026974 | 1 | 2 | 33.2% | 96.3% | 408 | 0.58 / 0.56 = 1.04 | ortholog_one2one: HOXA13 | 1 |
p15 | q14 | +/+ | ENSP00000222761 | EVX1 | q14 | q14 | 642 | 3 | 98980072 | 98983464 | -1 | 2 | 88.9% | 87.1% | 1119 | 0.51 / 0.01 = 51 | ortholog_one2one: EVX1 | 1 |
p16 | --- | gapq | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | q15 | +/+ | ENSP00000265395 | HIBADH | q15 | q15 | 652.4 | 3 | 98565502 | 98705633 | 1 | 7 | 92.6% | 94% | 1008 | 1 / 0.07 = 14.29 | ortholog_one2one: HIBADH | 1 |
region 3 (region 1 for Mmus)
retrieve target region: getEnsemblProteins.pl -h Mus_musculus -l 6 -i 51789593:52559931 -f 58e4 some_geneID_to_be_selected
scoreRatio_sum=310.21 log_scoreRatio_sum=36.2 focal_scoreRatio_sum=90.11
AlnScore=12736 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Mus_musculus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000005587 | SKAP2 | q1 | q1 | 527.7 | 6 | 51789593 | 51933339 | -1 | 7 | 78.6% | 82.2% | 882 | 0.91 / 0.22 = 4.14 | ortholog_one2one: Skap2 | 1 |
p2 | --- | gapq | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q2 | +/+ | ENSP00000343246 | HOXA1 | q2 | q2 | 632 | 6 | 52086320 | 52087804 | -1 | 2 | 100% | 89.7% | 1023 | 0.67 / 0.05 = 13.4 | ortholog_one2one: Hoxa1 | 1 |
p4 | q3 | +/+ | ENSP00000222718 | HOXA2 | q3 | q3 | 724 | 6 | 52092472 | 52094227 | -1 | 2 | 100% | 92.8% | 1149 | 0.58 / 0.01 = 58 | ortholog_one2one: Hoxa2 | 1 |
p5 | q4 | +/+ | ENSP00000324884 | HOXA3 | q4 | q4 | 795 | 6 | 52099526 | 52102232 | -1 | 2 | 100% | 85.2% | 1338 | 0.51 / 0.05 = 10.2 | ortholog_one2one: Hoxa3 | 1 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q5 | +/+ | ENSP00000353151 | HOXA4 | q5 | q5 | 373 | 6 | 52119928 | 52121271 | -1 | 2 | 100% | 62.9% | 858 | 0.63 / 0.45 = 1.4 | ortholog_one2one: Hoxa4 | 1 |
p8 | q6 | +/+ | ENSP00000222726 | HOXA5 | q6 | q6 | 552 | 6 | 52132167 | 52133933 | -1 | 2 | 100% | 97.8% | 810 | 0.42 / 0.01 = 42 | ortholog_one2one: Hoxa5 | 1 |
p9 | q7 | +/+ | ENSP00000222728 | HOXA6 | q7 | q7 | 474 | 6 | 52135951 | 52138207 | -1 | 2 | 100% | 94.9% | 708 | 0.49 / 0.05 = 9.8 | ortholog_one2one: Hoxa6 | 1 |
p10 | q8 | +/+ | ENSP00000242159 | HOXA7 | q8 | q8 | 410 | 6 | 52145360 | 52146988 | -1 | 2 | 91.7% | 90% | 660 | 0.72 / 0.15 = 4.8 | ortholog_one2one: Hoxa7 | 1 |
p11 | q9 | +/+ | ENSP00000343619 | HOXA9 | q9 | q9 | 561 | 6 | 52153830 | 52155687 | -1 | 2 | 100% | 97.4% | 816 | 0.56 / 0.02 = 28 | ortholog_one2one: Hoxa9 | 1 |
p12 | q10 | +/+ | ENSP00000283921 | HOXA10 | q10 | q10 | 671 | 6 | 52162092 | 52164466 | -1 | 2 | 100% | 81.8% | 1227 | 0.64 / 0.07 = 9.14 | ortholog_one2one: Hoxa10 | 1 |
p13 | q11 | +/+ | ENSP00000006015 | HOXA11 | q11 | q11 | 531 | 6 | 52172946 | 52175299 | -1 | 2 | 100% | 82.6% | 960 | 0.46 / 0.03 = 15.33 | ortholog_one2one: Hoxa11 | 1 |
p14 | q12 | +/+ | ENSP00000222753 | HOXA13 | q12 | q12 | 643.5 | 6 | 52188490 | 52190352 | -1 | 4 | 85.1% | 92.8% | 987 | 0.58 / 0.01 = 58 | ortholog_one2one: Hoxa13 | 1 |
p15 | q13 | +/+ | ENSP00000222761 | EVX1 | q13 | q13 | 720 | 6 | 52243423 | 52246674 | 1 | 3 | 100% | 81.9% | 1317 | 0.51 / 0.01 = 51 | ortholog_one2one: Evx1 | 1 |
p16 | --- | gapq | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | q14 | +/+ | ENSP00000265395 | HIBADH | q14 | q14 | 563.2 | 6 | 52476485 | 52559931 | -1 | 6 | 86% | 87.7% | 927 | 1 / 0.2 = 5 | ortholog_one2many: Hibadh | 1 |
region 4 (region 1 for Cfam)
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 14 -i 42873930:43723829 -f 64e4 some_geneID_to_be_selected
scoreRatio_sum=176.84 log_scoreRatio_sum=26.62 focal_scoreRatio_sum=61.03
AlnScore=11893 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Canis_familiaris
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000005587 | SKAP2 | q1 | q1 | 517.2 | 14 | 42873930 | 43039498 | -1 | 7 | 74.7% | 86.8% | 819 | 0.91 / 0.24 = 3.79 | ortholog_one2one: 482366 | 1 |
p2 | --- | gapq | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q2 | +/+ | ENSP00000343246 | HOXA1 | q2 | q2 | 390 | 14 | 43224741 | 43225391 | -1 | 1 | 65.4% | 86.8% | 651 | 0.67 / 0.41 = 1.63 | ortholog_one2one: 482367 | 1 |
p4 | q3 | +/+ | ENSP00000222718 | HOXA2 | q3 | q3 | 717 | 14 | 43230182 | 43231949 | -1 | 2 | 100% | 91.3% | 1170 | 0.58 / 0.02 = 29 | ortholog_one2one: 609592 | 1 |
p5 | q4 | +/+ | ENSP00000324884 | HOXA3 | q4 | q4 | 782 | 14 | 43237520 | 43240239 | -1 | 2 | 100% | 81.6% | 1401 | 0.51 / 0.07 = 7.29 | ortholog_one2one: HOXA3 | 1 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q5 | +/+ | ENSP00000353151 | HOXA4 | q5 | q5 | 478 | 14 | 43258529 | 43260031 | -1 | 2 | 100% | 73.8% | 954 | 0.63 / 0.3 = 2.1 | ortholog_one2one: Q9XT68_CANFA | 1 |
--- | q6 | gapp | - | - | - | q6 | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q7 | +/+ | ENSP00000222726 | HOXA5 | q7 | q7 | 360 | 14 | 43272608 | 43273168 | -1 | 1 | 69.3% | 92.5% | 561 | 0.42 / 0.36 = 1.17 | ortholog_one2one: HOXA5 | 1 |
p9 | q8 | +/+ | ENSP00000222728 | HOXA6 | q8 | q8 | 487 | 14 | 43275219 | 43277309 | -1 | 2 | 100% | 96.6% | 714 | 0.49 / 0.02 = 24.5 | ortholog_one2one: 611383 | 1 |
p10 | q9 | +/+ | ENSP00000242159 | HOXA7 | q9 | q9 | 410 | 14 | 43284774 | 43286350 | -1 | 2 | 84.3% | 99% | 585 | 0.72 / 0.15 = 4.8 | ortholog_one2one: 482371 | 1 |
p11 | q10 | +/+ | ENSP00000343619 | HOXA9 | q10 | q10 | 564 | 14 | 43293507 | 43295428 | -1 | 2 | 100% | 97.4% | 816 | 0.56 / 0.02 = 28 | ortholog_one2one: 482372 | 1 |
p12 | q11 | +/+ | ENSP00000283921 | HOXA10 | q11 | q11 | 631 | 14 | 43301964 | 43304348 | -1 | 2 | 100% | 80.7% | 1194 | 0.64 / 0.13 = 4.92 | ortholog_one2one: 482373 | 1 |
p13 | q12 | +/+ | ENSP00000006015 | HOXA11 | q12 | q12 | 503 | 14 | 43312984 | 43315440 | -1 | 2 | 78.9% | 96.8% | 741 | 0.46 / 0.09 = 5.11 | ortholog_one2one: HOXA11 | 1 |
p14 | q13 | +/+ | ENSP00000222753 | HOXA13 | q13 | q13 | 483 | 14 | 43328786 | 43330229 | -1 | 2 | 61.3% | 94.6% | 723 | 0.58 / 0.24 = 2.42 | ortholog_one2one: 482375 | 1 |
p15 | q14 | +/+ | ENSP00000222761 | EVX1 | q14 | q14 | 702 | 14 | 43374223 | 43377670 | 1 | 3 | 100% | 81.2% | 1293 | 0.51 / 0.01 = 51 | ortholog_one2one: 482376 | 1 |
p16 | --- | gapq | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | q15 | +/+ | ENSP00000265395 | HIBADH | q15 | q15 | 639.1 | 14 | 43628673 | 43723829 | -1 | 7 | 91.4% | 94% | 993 | 1 / 0.09 = 11.11 | ortholog_one2one: 479610 | 2 |
region 5 (region 1 for Mdom)
retrieve target region: getEnsemblProteins.pl -h Monodelphis_domestica -l 8 -i 292554153:293690078 -f 85e4 some_geneID_to_be_selected
scoreRatio_sum=70.49 log_scoreRatio_sum=18.72 focal_scoreRatio_sum=16.51
AlnScore=10929 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Monodelphis_domestica
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000005587 | SKAP2 | q1 | q1 | 495.6 | 8 | 293547015 | 293690078 | 1 | 7 | 75.2% | 78.5% | 837 | 0.91 / 0.27 = 3.37 | ortholog_one2one: SKAP2 | 1 |
p2 | --- | gapq | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q2 | +/+ | ENSP00000343246 | HOXA1 | q2 | q2 | 590 | 8 | 293352743 | 293354376 | 1 | 2 | 100% | 83% | 1038 | 0.67 / 0.12 = 5.58 | ortholog_one2one: HOXA1 | 1 |
p4 | q3 | +/+ | ENSP00000222718 | HOXA2 | q3 | q3 | 655 | 8 | 293345541 | 293347302 | 1 | 2 | 100% | 87.1% | 1131 | 0.58 / 0.11 = 5.27 | ortholog_one2one: HOXA2 | 1 |
p5 | q4 | +/+ | ENSP00000324884 | HOXA3 | q4 | q4 | 660 | 8 | 293336615 | 293339276 | 1 | 2 | 100% | 70.7% | 1368 | 0.51 / 0.21 = 2.43 | ortholog_one2one: HOXA3 | 1 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q5 | +/+ | ENSP00000353151 | HOXA4 | q5 | q5 | 265 | 8 | 293316292 | 293317805 | 1 | 2 | 100% | 51% | 963 | 0.63 / 0.61 = 1.03 | ortholog_one2one: HOXA4 | 1 |
p8 | q6 | +/+ | ENSP00000222726 | HOXA5 | q6 | q6 | 490 | 8 | 293302329 | 293304252 | 1 | 2 | 100% | 84.8% | 825 | 0.42 / 0.12 = 3.5 | ortholog_one2one: HOXA5 | 1 |
p9 | q7 | +/+ | ENSP00000222728 | HOXA6 | q7 | q7 | 443 | 8 | 293298050 | 293300138 | 1 | 2 | 100% | 89.3% | 699 | 0.49 / 0.11 = 4.45 | ortholog_one2one: HOXA6 | 1 |
p10 | q8 | +/+ | ENSP00000242159 | HOXA7 | q8 | q8 | 367 | 8 | 293287927 | 293289833 | 1 | 2 | 90% | 83.4% | 630 | 0.72 / 0.24 = 3 | noComparaHits: HOXA9 | 1 |
p11 | q9 | +/+ | ENSP00000343619 | HOXA9 | q9 | q9 | 251 | 8 | 293276346 | 293276969 | 1 | 1 | 77.9% | 63.8% | 624 | 0.56 / 0.56 = 1 | ortholog_one2one: HOXA9 | 1 |
p12 | q10 | +/+ | ENSP00000283921 | HOXA10 | q10 | q10 | 485 | 8 | 293266093 | 293268944 | 1 | 2 | 100% | 60.8% | 1338 | 0.64 / 0.33 = 1.94 | ortholog_one2one: HOXA10 | 1 |
p13 | q11 | +/+ | ENSP00000006015 | HOXA11 | q11 | q11 | 498 | 8 | 293253076 | 293255750 | 1 | 2 | 100% | 73.9% | 1023 | 0.46 / 0.09 = 5.11 | ortholog_one2one: HOXA11 | 1 |
p14 | q12 | +/+ | ENSP00000222753 | HOXA13 | q12 | q12 | 599 | 8 | 293234661 | 293236750 | 1 | 2 | 100% | 76.8% | 1197 | 0.58 / 0.06 = 9.67 | ortholog_one2one: Q9TUC8_MONDO | 1 |
p15 | q13 | +/+ | ENSP00000222761 | EVX1 | q13 | q13 | 615 | 8 | 293153229 | 293157272 | -1 | 3 | 100% | 74.8% | 1239 | 0.51 / 0.03 = 17 | ortholog_one2one: EVX1 | 1 |
p16 | --- | gapq | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | q14 | +/+ | ENSP00000265395 | HIBADH | q14 | q14 | 607.4 | 8 | 292712693 | 292857997 | 1 | 7 | 91.1% | 81.7% | 1062 | 1 / 0.14 = 7.14 | ortholog_one2many: ENSMODG00000000340 | 1 |
region 6 (region 1 for Xtro)
retrieve target region: getEnsemblProteins.pl -h Xenopus_tropicalis -l scaffold_56 -i 1151389:1730155 -f 43e4 some_geneID_to_be_selected
scoreRatio_sum=29.81 log_scoreRatio_sum=9.35 focal_scoreRatio_sum=8.22
AlnScore=9118 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Xenopus_tropicalis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000005587 | SKAP2 | q1 | q1 | 271.9 | scaffold_56 | 1602051 | 1730155 | 1 | 4 | 43.2% | 71.7% | 498 | 0.91 / 0.6 = 1.52 | ortholog_one2one: scap2 | 1 |
p2 | --- | gapq | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q2 | +/+ | ENSP00000343246 | HOXA1 | q2 | q2 | 480 | scaffold_56 | 1479966 | 1481226 | 1 | 2 | 99.7% | 70.5% | 978 | 0.67 / 0.28 = 2.39 | ortholog_one2one: hoxa1 | 1 |
p4 | q3 | +/+ | ENSP00000222718 | HOXA2 | q3 | q3 | 600 | scaffold_56 | 1470271 | 1471801 | 1 | 2 | 100% | 80.7% | 1119 | 0.58 / 0.18 = 3.22 | ortholog_one2one: HOXA2 | 1 |
p5 | q4 | +/+ | ENSP00000324884 | HOXA3 | q4 | q4 | 403 | scaffold_56 | 1464659 | 1465438 | 1 | 1 | 60.9% | 74.5% | 780 | 0.51 / 0.52 = 0.98 | ortholog_one2one: HOXA3 | 1 |
--- | q5 | gapp | - | - | - | q5 | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q6 | +/+ | ENSP00000353151 | HOXA4 | q6 | q6 | 254.7 | scaffold_56 | 1443839 | 1444910 | 1 | 2 | 90.6% | 50.6% | 735 | 0.63 / 0.62 = 1.02 | ortholog_one2one: HOXA4 | 1 |
p8 | q7 | +/+ | ENSP00000222726 | HOXA5 | q7 | q7 | 460 | scaffold_56 | 1433019 | 1434430 | 1 | 2 | 100% | 79% | 822 | 0.42 / 0.18 = 2.33 | ortholog_one2one: hoxa5 | 1 |
p9 | q8 | +/+ | ENSP00000222728 | HOXA6 | q8 | q8 | 356 | scaffold_56 | 1430023 | 1431420 | 1 | 2 | 100% | 71.6% | 702 | 0.49 / 0.28 = 1.75 | noComparaHits: ENSXETG00000027535 | 1 |
p10 | q9 | +/+ | ENSP00000242159 | HOXA7 | q9 | q9 | 304 | scaffold_56 | 1421765 | 1423392 | 1 | 2 | 95.2% | 69.5% | 624 | 0.72 / 0.37 = 1.95 | ortholog_one2one: HOXA7 | 1 |
p11 | q10 | +/+ | ENSP00000343619 | HOXA9 | q10 | q10 | 382 | scaffold_56 | 1415310 | 1416635 | 1 | 2 | 100% | 68.2% | 786 | 0.56 / 0.33 = 1.7 | noComparaHits: ENSXETG00000000724 | 1 |
p12 | q11 | +/+ | ENSP00000283921 | HOXA10 | q11 | q11 | 420 | scaffold_56 | 1407357 | 1409254 | 1 | 2 | 100% | 59.7% | 1068 | 0.64 / 0.42 = 1.52 | ortholog_one2one: HOXA10 | 1 |
p13 | q12 | +/+ | ENSP00000006015 | HOXA11 | q12 | q12 | 429 | scaffold_56 | 1397331 | 1399145 | 1 | 2 | 81.5% | 83.1% | 756 | 0.46 / 0.22 = 2.09 | ortholog_one2one: HOXA11 | 1 |
p14 | q13 | +/+ | ENSP00000222753 | HOXA13 | q13 | q13 | 400 | scaffold_56 | 1384790 | 1386299 | 1 | 2 | 100% | 56.2% | 936 | 0.58 / 0.37 = 1.57 | ortholog_one2one: HOXA13 | 1 |
p15 | q14 | +/+ | ENSP00000222761 | EVX1 | q14 | q14 | 567 | scaffold_56 | 1323527 | 1325865 | -1 | 3 | 99% | 71.3% | 1161 | 0.51 / 0.11 = 4.64 | ortholog_one2one: EVX1 | 1 |
p16 | --- | gapq | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | q15 | +/+ | ENSP00000265395 | HIBADH | q15 | q15 | 475.7 | scaffold_56 | 1151389 | 1228229 | 1 | 5 | 89.9% | 74.5% | 921 | 1 / 0.32 = 3.13 | ortholog_one2one: Q5BKJ0_XENTR | 1 |
region 7 (region 1 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 2 -i 32327815:32855815 -f 40e4 some_geneID_to_be_selected
scoreRatio_sum=28.74 log_scoreRatio_sum=7.02 focal_scoreRatio_sum=8.26
AlnScore=7735 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000005587 | SKAP2 | q1 | q1 | 290.4 | 2 | 32327815 | 32369123 | -1 | 4 | 37.9% | 84.2% | 438 | 0.91 / 0.57 = 1.6 | ortholog_one2one: 420629 | 1 |
p2 | --- | gapq | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q2 | +/+ | ENSP00000343246 | HOXA1 | q2 | q2 | 177 | 2 | 32513673 | 32513981 | -1 | 1 | 30.7% | 85.4% | 309 | 0.67 / 0.73 = 0.92 | noComparaHits: Q804C5_CHICK | 1 |
p4 | q3 | +/+ | ENSP00000222718 | HOXA2 | q3 | q3 | 179 | 2 | 32518833 | 32519213 | -1 | 1 | 34.6% | 69.2% | 381 | 0.58 / 0.75 = 0.77 | ortholog_one2one: Q804C5_CHICK | 1 |
p5 | q4 | +/+ | ENSP00000324884 | HOXA3 | q4 | q4 | 677 | 2 | 32524757 | 32527370 | -1 | 2 | 100% | 74.8% | 1278 | 0.51 / 0.19 = 2.68 | ortholog_one2one: HXD3_CHICK | 1 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q5 | +/+ | ENSP00000353151 | HOXA4 | q5 | q5 | 238.4 | 2 | 32544810 | 32546192 | -1 | 2 | 46.6% | 78.5% | 435 | 0.63 / 0.65 = 0.97 | ortholog_one2one: HXA4_CHICK | 1 |
p8 | q6 | +/+ | ENSP00000222726 | HOXA5 | q6 | q6 | 174 | 2 | 32558335 | 32558583 | -1 | 1 | 30.7% | 100% | 249 | 0.42 / 0.69 = 0.61 | noComparaHits: HOXA6 | 2 |
p9 | q7 | +/+ | ENSP00000222728 | HOXA6 | q7 | q7 | 396 | 2 | 32562094 | 32563595 | -1 | 2 | 92.7% | 85.6% | 642 | 0.49 / 0.2 = 2.45 | ortholog_one2one: HOXA6 | 1 |
p10 | q8 | +/+ | ENSP00000242159 | HOXA7 | q8 | q8 | 307 | 2 | 32570326 | 32571985 | -1 | 2 | 84.3% | 75% | 564 | 0.72 / 0.36 = 2 | ortholog_one2one: HXA7_CHICK | 1 |
p11 | q9 | +/+ | ENSP00000343619 | HOXA9 | q9 | q9 | 398 | 2 | 32579719 | 32581455 | -1 | 2 | 100% | 71.2% | 792 | 0.56 / 0.3 = 1.87 | ortholog_one2one: HXA9_CHICK | 1 |
--- | q10 | gapp | - | - | - | q10 | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q11 | +/+ | ENSP00000283921 | HOXA10 | q11 | q11 | 245 | 2 | 32590110 | 32590937 | -1 | 1 | 82.2% | 50% | 828 | 0.64 / 0.66 = 0.97 | between_species_paralog: ENSGALG00000011072 | 1 |
p13 | q12 | +/+ | ENSP00000006015 | HOXA11 | q12 | q12 | 461 | 2 | 32600650 | 32603870 | -1 | 2 | 100% | 74% | 894 | 0.46 / 0.16 = 2.88 | ortholog_one2one: HXA11_CHICK | 1 |
p14 | q13 | +/+ | ENSP00000222753 | HOXA13 | q13 | q13 | 290 | 2 | 32621247 | 32621918 | -1 | 1 | 79.1% | 56.7% | 672 | 0.58 / 0.54 = 1.07 | noComparaHits: HXA13_CHICK | 1 |
p15 | q14 | +/+ | ENSP00000222761 | EVX1 | q14 | q14 | 581 | 2 | 32656482 | 32659744 | 1 | 3 | 96.1% | 71.5% | 1194 | 0.51 / 0.08 = 6.38 | ortholog_one2one: EVX1 | 1 |
p16 | --- | gapq | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | q15 | +/+ | ENSP00000265395 | HIBADH | q15 | q15 | 504 | 2 | 32781698 | 32855815 | -1 | 6 | 89.3% | 79.6% | 909 | 1 / 0.28 = 3.57 | ortholog_one2one: Q5ZLI9_CHICK | 1 |
region 8 (region 1 for Olat)
retrieve target region: getEnsemblProteins.pl -h Oryzias_latipes -l 11 -i 10492542:10619894 -f 96e3 some_geneID_to_be_selected
scoreRatio_sum=17.3 log_scoreRatio_sum=3.84 focal_scoreRatio_sum=4.79
AlnScore=6577 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Oryzias_latipes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000343246 | HOXA1 | q1 | q1 | 375 | 11 | 10492587 | 10493935 | -1 | 2 | 97.3% | 58.4% | 972 | 0.67 / 0.44 = 1.52 | ortholog_one2one: Q3V637_ORYLA | 1 |
p4 | q2 | +/+ | ENSP00000222718 | HOXA2 | q2 | q2 | 481 | 11 | 10497905 | 10499533 | -1 | 2 | 100% | 66.2% | 1125 | 0.58 / 0.34 = 1.71 | ortholog_one2many: Q3V636_ORYLA | 1 |
p5 | q3 | +/+ | ENSP00000324884 | HOXA3 | q3 | q3 | 497 | 11 | 10503391 | 10506703 | -1 | 2 | 100% | 59.2% | 1275 | 0.51 / 0.41 = 1.24 | ortholog_one2one: Q3V635_ORYLA | 1 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q4 | +/+ | ENSP00000353151 | HOXA4 | q4 | q4 | 245.8 | 11 | 10516157 | 10517399 | -1 | 2 | 97.5% | 44.9% | 840 | 0.63 / 0.64 = 0.98 | noComparaHits: Q9PTV6_ORYLA | 1 |
p8 | q5 | +/+ | ENSP00000222726 | HOXA5 | q5 | q5 | 363 | 11 | 10525353 | 10526735 | -1 | 2 | 100% | 66.7% | 846 | 0.42 / 0.35 = 1.2 | noComparaHits: Q9PTV6_ORYLA | 1 |
p9 | --- | gapq | ENSP00000222728 | HOXA6 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q6 | +/+ | ENSP00000242159 | HOXA7 | q6 | q6 | 132.5 | 11 | 10534219 | 10535456 | -1 | 2 | 71.3% | 47.6% | 474 | 0.72 / 0.72 = 1 | noComparaHits: Q9PTV6_ORYLA | 2 |
p11 | q7 | +/+ | ENSP00000343619 | HOXA9 | q7 | q7 | 274 | 11 | 10539576 | 10540702 | -1 | 2 | 100% | 54.9% | 810 | 0.56 / 0.52 = 1.08 | noComparaHits: Q9PTV6_ORYLA | 1 |
p12 | q8 | +/+ | ENSP00000283921 | HOXA10 | q8 | q8 | 309 | 11 | 10545005 | 10546852 | -1 | 2 | 100% | 47.3% | 1104 | 0.64 / 0.57 = 1.12 | ortholog_one2many: Q3V630_ORYLA | 1 |
p13 | q9 | +/+ | ENSP00000006015 | HOXA11 | q9 | q9 | 372 | 11 | 10551755 | 10553422 | -1 | 2 | 100% | 62.3% | 897 | 0.46 / 0.32 = 1.44 | ortholog_one2many: Q3V629_ORYLA | 1 |
p14 | q10 | +/+ | ENSP00000222753 | HOXA13 | q10 | q10 | 382 | 11 | 10561893 | 10563229 | -1 | 2 | 100% | 55.9% | 903 | 0.58 / 0.4 = 1.45 | ortholog_one2many: Q3V628_ORYLA | 1 |
p15 | q11 | +/+ | ENSP00000222761 | EVX1 | q11 | q11 | 442.5 | 11 | 10570435 | 10572561 | 1 | 3 | 98% | 59.4% | 1143 | 0.51 / 0.3 = 1.7 | ortholog_one2one: Q2WFV6_ORYLA | 1 |
p16 | --- | gapq | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | q12 | +/+ | ENSP00000265395 | HIBADH | q12 | q12 | 458.2 | 11 | 10596899 | 10619894 | -1 | 5 | 83.9% | 68.7% | 987 | 1 / 0.35 = 2.86 | ortholog_one2many: ENSORLG00000005067 | 2 |
region 9 (region 1 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l groupX -i 9855280:9969018 -f 85e3 some_geneID_to_be_selected
scoreRatio_sum=16.94 log_scoreRatio_sum=3.65 focal_scoreRatio_sum=4.72
AlnScore=6508 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000343246 | HOXA1 | q1 | q1 | 381 | groupX | 9855280 | 9856578 | -1 | 2 | 99.4% | 58.1% | 987 | 0.67 / 0.43 = 1.56 | ortholog_one2one: ENSGACG00000007085 | 1 |
p4 | q2 | +/+ | ENSP00000222718 | HOXA2 | q2 | q2 | 485 | groupX | 9860317 | 9861991 | -1 | 2 | 97.1% | 70.2% | 1047 | 0.58 / 0.34 = 1.71 | ortholog_one2many: ENSGACG00000007090 | 1 |
p5 | q3 | +/+ | ENSP00000324884 | HOXA3 | q3 | q3 | 493 | groupX | 9866274 | 9869714 | -1 | 2 | 100% | 60.7% | 1251 | 0.51 / 0.41 = 1.24 | ortholog_one2one: ENSGACG00000007094 | 1 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q4 | +/+ | ENSP00000353151 | HOXA4 | q4 | q4 | 164 | groupX | 9880506 | 9880766 | -1 | 1 | 27.2% | 87.4% | 261 | 0.63 / 0.76 = 0.83 | ortholog_one2one: ENSGACG00000007100 | 2 |
p8 | q5 | +/+ | ENSP00000222726 | HOXA5 | q5 | q5 | 356 | groupX | 9889836 | 9891245 | -1 | 2 | 100% | 65.4% | 840 | 0.42 / 0.36 = 1.17 | ortholog_one2one: ENSGACG00000007108 | 1 |
p9 | --- | gapq | ENSP00000222728 | HOXA6 | q6 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q6 | +/+ | ENSP00000242159 | HOXA7 | q6 | q6 | 230.7 | groupX | 9896109 | 9897606 | -1 | 2 | 94.8% | 55.2% | 633 | 0.72 / 0.52 = 1.38 | ortholog_one2one: ENSGACG00000007112 | 1 |
p11 | q7 | +/+ | ENSP00000343619 | HOXA9 | q7 | q7 | 236.1 | groupX | 9901359 | 9902621 | -1 | 2 | 70.6% | 62.5% | 549 | 0.56 / 0.59 = 0.95 | ortholog_one2many: ENSGACG00000007123 | 2 |
p12 | q8 | +/+ | ENSP00000283921 | HOXA10 | q8 | q8 | 306 | groupX | 9906816 | 9908599 | -1 | 2 | 100% | 47.8% | 1086 | 0.64 / 0.57 = 1.12 | ortholog_one2many: ENSGACG00000007128 | 1 |
p13 | q9 | +/+ | ENSP00000006015 | HOXA11 | q9 | q9 | 357 | groupX | 9914072 | 9915687 | -1 | 2 | 98.7% | 60.8% | 882 | 0.46 / 0.35 = 1.31 | ortholog_one2many: ENSGACG00000007132 | 1 |
p14 | q10 | +/+ | ENSP00000222753 | HOXA13 | q10 | q10 | 372 | groupX | 9924924 | 9926349 | -1 | 2 | 99.7% | 56.9% | 897 | 0.58 / 0.41 = 1.41 | ortholog_one2many: Q9PWC4_GASAC | 1 |
p15 | q11 | +/+ | ENSP00000222761 | EVX1 | q11 | q11 | 451.1 | groupX | 9934458 | 9936730 | 1 | 3 | 96.1% | 60.1% | 1116 | 0.51 / 0.29 = 1.76 | ortholog_one2one: ENSGACG00000007148 | 1 |
p16 | --- | gapq | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | q12 | +/+ | ENSP00000265395 | HIBADH | q12 | q12 | 421.6 | groupX | 9953837 | 9969018 | -1 | 4 | 84.2% | 58.6% | 1137 | 1 / 0.4 = 2.5 | ortholog_one2many: ENSGACG00000007155 | 2 |
region 10 (region 1 for Btau)
retrieve target region: getEnsemblProteins.pl -h Bos_taurus -l 4 -i 37098097:37159206 -f 46e3 some_geneID_to_be_selected
scoreRatio_sum=115.35 log_scoreRatio_sum=15.23 focal_scoreRatio_sum=22.77
AlnScore=5933 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Bos_taurus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000343246 | HOXA1 | q1 | q1 | 627 | 4 | 37157707 | 37159206 | 1 | 2 | 100% | 84.5% | 1089 | 0.67 / 0.06 = 11.17 | ortholog_one2one: HOXA1 | 1 |
p4 | q2 | +/+ | ENSP00000222718 | HOXA2 | q2 | q2 | 736 | 4 | 37151131 | 37152881 | 1 | 2 | 100% | 94.3% | 1149 | 0.58 / 0.01 = 58 | ortholog_one2one: HOXA2 | 1 |
p5 | q3 | +/+ | ENSP00000324884 | HOXA3 | q3 | q3 | 758 | 4 | 37142956 | 37145704 | 1 | 2 | 90.1% | 84.6% | 1284 | 0.51 / 0.1 = 5.1 | ortholog_one2one: HOXA3 | 1 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q4 | +/+ | ENSP00000353151 | HOXA4 | q4 | q4 | 222 | 4 | 37124791 | 37125138 | 1 | 1 | 36.3% | 90.5% | 348 | 0.63 / 0.67 = 0.94 | ortholog_one2one: HOXA4 | 3 |
p8 | q5 | +/+ | ENSP00000222726 | HOXA5 | q5 | q5 | 535 | 4 | 37111024 | 37112777 | 1 | 2 | 96.7% | 98.5% | 783 | 0.42 / 0.04 = 10.5 | ortholog_one2one: HOXA5 | 1 |
p9 | q6 | +/+ | ENSP00000222728 | HOXA6 | q6 | q6 | 488 | 4 | 37106916 | 37108988 | 1 | 2 | 100% | 97.1% | 714 | 0.49 / 0.02 = 24.5 | ortholog_one2one: HOXA6 | 1 |
p10 | q7 | +/+ | ENSP00000242159 | HOXA7 | q7 | q7 | 413 | 4 | 37098097 | 37099670 | 1 | 2 | 87.8% | 94.6% | 612 | 0.72 / 0.14 = 5.14 | ortholog_one2one: HOXA7 | 1 |
p11 | --- | gape | ENSP00000343619 | HOXA9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000283921 | HOXA10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 11 (region 1 for Tnig)
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l 21 -i 2953732:3053565 -f 75e3 some_geneID_to_be_selected
scoreRatio_sum=14.65 log_scoreRatio_sum=2.95 focal_scoreRatio_sum=4
AlnScore=5915 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Tetraodon_nigroviridis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000343246 | HOXA1 | q1 | q1 | 372 | 21 | 3052131 | 3053406 | 1 | 2 | 97.3% | 58.8% | 960 | 0.67 / 0.44 = 1.52 | ortholog_one2many: HOXA1
; GSTENG00017483001 |
1 |
p4 | q2 | +/+ | ENSP00000222718 | HOXA2 | q2 | q2 | 472 | 21 | 3047147 | 3048761 | 1 | 2 | 100% | 66.8% | 1080 | 0.58 / 0.35 = 1.66 | ortholog_one2many: HOXA2 | 1 |
p5 | q3 | +/+ | ENSP00000324884 | HOXA3 | q3 | q3 | 509 | 21 | 3040373 | 3043259 | 1 | 2 | 100% | 62% | 1269 | 0.51 / 0.39 = 1.31 | ortholog_one2many: HOXA3
; GSTENG00017482001 |
1 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q4 | +/+ | ENSP00000353151 | HOXA4 | q4 | q4 | 225.9 | 21 | 3029847 | 3031009 | 1 | 2 | 88.4% | 46.1% | 714 | 0.63 / 0.66 = 0.95 | ortholog_one2one: HOXA4 | 1 |
p8 | q5 | +/+ | ENSP00000222726 | HOXA5 | q5 | q5 | 356 | 21 | 3021241 | 3022616 | 1 | 2 | 100% | 65.8% | 828 | 0.42 / 0.36 = 1.17 | ortholog_one2many: GSTENG00017481001
; HOXA5 |
1 |
p9 | --- | gapq | ENSP00000222728 | HOXA6 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gapq | ENSP00000242159 | HOXA7 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q6 | +/+ | ENSP00000343619 | HOXA9 | q6 | q6 | 280 | 21 | 3012226 | 3013378 | 1 | 2 | 100% | 55.2% | 819 | 0.56 / 0.51 = 1.1 | ortholog_one2many: HOXA9
; GSTENG00017478001 |
1 |
p12 | q7 | +/+ | ENSP00000283921 | HOXA10 | q7 | q7 | 292 | 21 | 3006856 | 3008450 | 1 | 2 | 100% | 45% | 1125 | 0.64 / 0.59 = 1.08 | ortholog_one2many: HOXA10 | 2 |
p13 | q8 | +/+ | ENSP00000006015 | HOXA11 | q8 | q8 | 356 | 21 | 2999955 | 3001420 | 1 | 2 | 100% | 61.8% | 876 | 0.46 / 0.35 = 1.31 | ortholog_one2many: HOXA11 | 1 |
p14 | q9 | +/+ | ENSP00000222753 | HOXA13 | q9 | q9 | 386 | 21 | 2986877 | 2988127 | 1 | 2 | 100% | 56.3% | 903 | 0.58 / 0.39 = 1.49 | ortholog_one2many: HOXA13
; GSTENG00017476001 |
1 |
p15 | q10 | +/+ | ENSP00000222761 | EVX1 | q10 | q10 | 365 | 21 | 2978001 | 2979124 | -1 | 2 | 62.4% | 67.9% | 825 | 0.51 / 0.42 = 1.21 | ortholog_one2many: EVX-HOXA
; GSTENG00017475001 |
1 |
p16 | --- | gapq | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | q11 | +/+ | ENSP00000265395 | HIBADH | q11 | q11 | 323.9 | 21 | 2953732 | 2965225 | 1 | 4 | 56.3% | 77.4% | 570 | 1 / 0.54 = 1.85 | ortholog_one2many: GSTENG00017474001 | 2 |
region 12 (region 2 for Btau)
retrieve target region: getEnsemblProteins.pl -h Bos_taurus -l 4 -i 39784917:40179400 -f 30e4 some_geneID_to_be_selected
scoreRatio_sum=162.1 log_scoreRatio_sum=14.53 focal_scoreRatio_sum=84.14
AlnScore=5201 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Bos_taurus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000353151 | HOXA4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000222726 | HOXA5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000222728 | HOXA6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000242159 | HOXA7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q1 | +/+ | ENSP00000343619 | HOXA9 | q1 | q1 | 565 | 4 | 40177480 | 40179376 | 1 | 2 | 100% | 95% | 843 | 0.56 / 0.01 = 56 | ortholog_one2one: HOXA9 | 1 |
p12 | q2 | +/+ | ENSP00000283921 | HOXA10 | q2 | q2 | 587 | 4 | 40168458 | 40171084 | 1 | 3 | 75.6% | 95% | 900 | 0.64 / 0.19 = 3.37 | ortholog_one2one: HOXA10 | 1 |
p13 | q3 | +/+ | ENSP00000006015 | HOXA11 | q3 | q3 | 544 | 4 | 40157132 | 40159492 | 1 | 2 | 100% | 81.5% | 1005 | 0.46 / 0.01 = 46 | ortholog_one2one: HOXA11 | 1 |
p14 | q4 | +/+ | ENSP00000222753 | HOXA13 | q4 | q4 | 253.4 | 4 | 40141768 | 40143117 | 1 | 2 | 28.6% | 98.2% | 333 | 0.58 / 0.6 = 0.97 | ortholog_one2one: HOXA13 | 3 |
p15 | q5 | +/+ | ENSP00000222761 | EVX1 | q5 | q5 | 800 | 4 | 40097176 | 40100392 | -1 | 3 | 100% | 86.9% | 1365 | 0.51 / 0.01 = 51 | ortholog_one2one: EVX1 | 1 |
p16 | --- | gapq | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | q6 | +/+ | ENSP00000265395 | HIBADH | q6 | q6 | 555.6 | 4 | 39784917 | 39882324 | 1 | 6 | 80.7% | 96% | 834 | 1 / 0.21 = 4.76 | ortholog_one2one: HIBADH | 1 |
region 13 (region 1 for Drer)
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 19 -i 13769305:13954144 -f 14e4 some_geneID_to_be_selected
scoreRatio_sum=13.1 log_scoreRatio_sum=1.55 focal_scoreRatio_sum=3.02
AlnScore=4687 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000343246 | HOXA1 | q1 | q1 | 354 | 19 | 13952984 | 13954135 | 1 | 2 | 94.9% | 56.9% | 963 | 0.67 / 0.47 = 1.43 | ortholog_one2one: hoxa1a | 1 |
p4 | q2 | +/+ | ENSP00000222718 | HOXA2 | q2 | q2 | 137.1 | 19 | 13949204 | 13950177 | 1 | 2 | 47.9% | 48.1% | 504 | 0.58 / 0.81 = 0.72 | noComparaHits: | 3 |
p5 | q3 | +/+ | ENSP00000324884 | HOXA3 | q3 | q3 | 446 | 19 | 13944458 | 13946294 | 1 | 2 | 100% | 55.1% | 1257 | 0.51 / 0.47 = 1.09 | ortholog_one2one: hoxa3a | 2 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q4 | +/+ | ENSP00000353151 | HOXA4 | q4 | q4 | 161 | 19 | 13935262 | 13935585 | 1 | 1 | 33.8% | 73.1% | 324 | 0.63 / 0.76 = 0.83 | noComparaHits: ENSDARG00000057724
; hoxa3a |
2 |
p8 | q5 | +/+ | ENSP00000222726 | HOXA5 | q5 | q5 | 352 | 19 | 13926353 | 13927654 | 1 | 2 | 100% | 65.8% | 825 | 0.42 / 0.37 = 1.14 | ortholog_one2one: hoxa5a | 1 |
p9 | --- | gapq | ENSP00000222728 | HOXA6 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gapq | ENSP00000242159 | HOXA7 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q6 | +/+ | ENSP00000343619 | HOXA9 | q6 | q6 | 148 | 19 | 13917752 | 13917991 | 1 | 1 | 29.4% | 85% | 240 | 0.56 / 0.74 = 0.76 | ortholog_one2many: hoxa9a | 5 |
p12 | --- | gapq | ENSP00000283921 | HOXA10 | q6 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | q7 | +/+ | ENSP00000006015 | HOXA11 | q7 | q7 | 233 | 19 | 13904074 | 13904907 | 1 | 1 | 99.7% | 43.7% | 834 | 0.46 / 0.57 = 0.81 | ortholog_one2many: hoxa11a | 5 |
p14 | q8 | +/+ | ENSP00000222753 | HOXA13 | q8 | q8 | 333 | 19 | 13896379 | 13897425 | 1 | 1 | 100% | 48.8% | 1047 | 0.58 / 0.47 = 1.23 | ortholog_one2many: hoxa13a | 2 |
p15 | q9 | +/+ | ENSP00000222761 | EVX1 | q9 | q9 | 449.9 | 19 | 13885840 | 13888155 | -1 | 3 | 98.5% | 58.9% | 1134 | 0.51 / 0.29 = 1.76 | ortholog_one2one: evx1 | 1 |
p16 | --- | gapq | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | q10 | +/+ | ENSP00000265395 | HIBADH | q10 | q10 | 491.2 | 19 | 13769305 | 13823718 | 1 | 6 | 83% | 72% | 981 | 1 / 0.3 = 3.33 | ortholog_one2many: zgc:100804 | 2 |
region 14 (region 1 for Trub)
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_12 -i 2318766:2382351 -f 48e3 some_geneID_to_be_selected
scoreRatio_sum=10.9 log_scoreRatio_sum=1.44 focal_scoreRatio_sum=3.24
AlnScore=4511 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Takifugu_rubripes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000343246 | HOXA1 | q1 | q1 | 387 | scaffold_12 | 2318841 | 2320151 | -1 | 2 | 97.3% | 60% | 960 | 0.67 / 0.42 = 1.6 | ortholog_one2one: NEWSINFRUG00000149627 | 1 |
p4 | q2 | +/+ | ENSP00000222718 | HOXA2 | q2 | q2 | 479 | scaffold_12 | 2323533 | 2325142 | -1 | 2 | 100% | 67.2% | 1092 | 0.58 / 0.34 = 1.71 | ortholog_one2many: NEWSINFRUG00000157594 | 1 |
p5 | q3 | +/+ | ENSP00000324884 | HOXA3 | q3 | q3 | 488 | scaffold_12 | 2329054 | 2331951 | -1 | 2 | 100% | 60.2% | 1272 | 0.51 / 0.42 = 1.21 | ortholog_one2one: NEWSINFRUG00000149628 | 1 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q4 | +/+ | ENSP00000353151 | HOXA4 | q4 | q4 | 160 | scaffold_12 | 2341356 | 2341613 | -1 | 1 | 26.9% | 87.2% | 258 | 0.63 / 0.76 = 0.83 | ortholog_one2one: NEWSINFRUG00000149629 | 2 |
p8 | q5 | +/+ | ENSP00000222726 | HOXA5 | q5 | q5 | 307 | scaffold_12 | 2350024 | 2351369 | -1 | 2 | 69.6% | 76% | 588 | 0.42 / 0.45 = 0.93 | noComparaHits: | 2 |
p9 | --- | gapq | ENSP00000222728 | HOXA6 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gapq | ENSP00000242159 | HOXA7 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q6 | +/+ | ENSP00000343619 | HOXA9 | q6 | q6 | 273 | scaffold_12 | 2360015 | 2361166 | -1 | 2 | 100% | 52.7% | 834 | 0.56 / 0.52 = 1.08 | ortholog_one2many: HXA9_FUGRU | 1 |
p12 | q7 | +/+ | ENSP00000283921 | HOXA10 | q7 | q7 | 176 | scaffold_12 | 2365048 | 2365326 | -1 | 1 | 23.7% | 90.3% | 279 | 0.64 / 0.75 = 0.85 | ortholog_one2many: NEWSINFRUG00000149640 | 2 |
p13 | q8 | +/+ | ENSP00000006015 | HOXA11 | q8 | q8 | 344 | scaffold_12 | 2371829 | 2373456 | -1 | 2 | 100% | 59.3% | 882 | 0.46 / 0.37 = 1.24 | ortholog_one2many: NEWSINFRUG00000157392 | 1 |
p14 | q9 | +/+ | ENSP00000222753 | HOXA13 | q9 | q9 | 383 | scaffold_12 | 2381062 | 2382351 | -1 | 2 | 100% | 56.9% | 906 | 0.58 / 0.4 = 1.45 | ortholog_one2many: NEWSINFRUG00000149643 | 1 |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 15 (region 2 for Drer)
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 3 -i 22929810:24716161 -f 13e5 some_geneID_to_be_selected
scoreRatio_sum=10.8 log_scoreRatio_sum=-0.3 focal_scoreRatio_sum=3.46
AlnScore=4373 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000343246 | HOXA1 | q1 | q1 | 223.7 | 3 | 22929828 | 22931513 | -1 | 2 | 97% | 44.6% | 951 | 0.67 / 0.66 = 1.02 | noComparaHits: hoxb1a | 2 |
p4 | q2 | +/+ | ENSP00000222718 | HOXA2 | q2 | q2 | 319 | 3 | 22946158 | 22948177 | -1 | 2 | 95.7% | 50.8% | 1095 | 0.58 / 0.56 = 1.04 | between_species_paralog: hoxb2a | 2 |
p5 | q3 | +/+ | ENSP00000324884 | HOXA3 | q3 | q3 | 467 | 3 | 22952393 | 22954315 | -1 | 2 | 100% | 55.6% | 1245 | 0.51 / 0.44 = 1.16 | between_species_paralog: hoxb3a | 1 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q4 | +/+ | ENSP00000353151 | HOXA4 | q4 | q4 | 237.6 | 3 | 22976953 | 22978642 | -1 | 2 | 97.5% | 43.8% | 756 | 0.63 / 0.65 = 0.97 | between_species_paralog: hoxb4a | 1 |
p8 | q5 | +/+ | ENSP00000222726 | HOXA5 | q5 | q5 | 307 | 3 | 22991224 | 22992663 | -1 | 2 | 100% | 58.5% | 831 | 0.42 / 0.45 = 0.93 | between_species_paralog: hoxb5a | 2 |
p9 | q6 | +/+ | ENSP00000222728 | HOXA6 | q6 | q6 | 268 | 3 | 22995009 | 22996746 | -1 | 2 | 99.1% | 59.1% | 681 | 0.49 / 0.46 = 1.07 | between_species_paralog: hoxb6a | 1 |
p10 | q7 | +/+ | ENSP00000242159 | HOXA7 | q7,q13 | q7 | 137 | 3 | 23004692 | 23004952 | -1 | 1 | 45.2% | 67.3% | 261 | 0.72 / 0.71 = 1.01 | between_species_paralog: hoxb7a | 1 |
--- | q8 | gapp | - | - | - | q8 | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q9 | +/+ | ENSP00000343619 | HOXA9 | q9 | q9 | 226.6 | 3 | 23019694 | 23022949 | -1 | 2 | 97.8% | 48% | 732 | 0.56 / 0.6 = 0.93 | between_species_paralog: hoxb9a | 4 |
p12 | q10 | +/+ | ENSP00000283921 | HOXA10 | q10 | q10 | 141 | 3 | 23029318 | 23029569 | -1 | 1 | 21.1% | 82.1% | 252 | 0.64 / 0.8 = 0.8 | ortholog_one2many: hoxb10a | 4 |
p13 | --- | gapq | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q11 | +/+ | ENSP00000222753 | HOXA13 | q11 | q11 | 319 | 3 | 23044786 | 23046123 | -1 | 2 | 100% | 50.5% | 909 | 0.58 / 0.5 = 1.16 | between_species_paralog: ENSDARG00000056016
; hoxb13a |
3 |
p15 | q12 | +/+ | ENSP00000222761 | EVX1 | q12 | q12 | 176.8 | 3 | 23057167 | 23058052 | 1 | 2 | 45.7% | 51.1% | 537 | 0.51 / 0.72 = 0.71 | noComparaHits: eve1 | 3 |
p16 | --- | gapq | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gapq | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
--- | q13 | gape | - | - | - | q13 | - | - | - | - | - | - | - | - | - | - | - | - |
--- | q14 | gape | - | - | - | q14 | - | - | - | - | - | - | - | - | - | - | - | - |
region 16 (region 3 for Drer)
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 16 -i 21045634:21242048 -f 15e4 some_geneID_to_be_selected
scoreRatio_sum=11.92 log_scoreRatio_sum=3.15 focal_scoreRatio_sum=3.26
AlnScore=3874 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000005587 | SKAP2 | q8 | q1 | 281.1 | 16 | 21208010 | 21242048 | 1 | 4 | 52.9% | 53.5% | 735 | 0.91 / 0.58 = 1.57 | ortholog_one2one: scap2 | 2 |
p2 | --- | gapq | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gapq | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q2 | +/+ | ENSP00000222718 | HOXA2 | q2 | q2 | 511 | 16 | 21199897 | 21201582 | 1 | 2 | 98.9% | 71% | 1071 | 0.58 / 0.3 = 1.93 | ortholog_one2one: hoxa2b | 1 |
p5 | --- | gapq | ENSP00000324884 | HOXA3 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000353151 | HOXA4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000222726 | HOXA5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000222728 | HOXA6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gapq | ENSP00000242159 | HOXA7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q3 | +/+ | ENSP00000343619 | HOXA9 | q3 | q3 | 240.1 | 16 | 21188212 | 21189738 | 1 | 2 | 99.6% | 48.9% | 774 | 0.56 / 0.58 = 0.97 | ortholog_one2many: hoxa9b | 3 |
p12 | q4 | +/+ | ENSP00000283921 | HOXA10 | q4 | q4 | 306 | 16 | 21182995 | 21185153 | 1 | 2 | 100% | 51% | 981 | 0.64 / 0.57 = 1.12 | ortholog_one2one: hoxa10b | 1 |
p13 | q5 | +/+ | ENSP00000006015 | HOXA11 | q5 | q5 | 390 | 16 | 21177658 | 21179250 | 1 | 2 | 100% | 63.8% | 864 | 0.46 / 0.29 = 1.59 | ortholog_one2many: hoxa11b | 1 |
p14 | q6 | +/+ | ENSP00000222753 | HOXA13 | q6 | q6 | 348 | 16 | 21167725 | 21168978 | 1 | 2 | 99.7% | 52.5% | 867 | 0.58 / 0.45 = 1.29 | ortholog_one2many: hoxa13b | 1 |
p15 | --- | gapq | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gapq | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | q7 | +/+ | ENSP00000265395 | HIBADH | q7 | q7 | 497.9 | 16 | 21145393 | 21160239 | 1 | 6 | 83% | 81.1% | 855 | 1 / 0.29 = 3.45 | ortholog_one2many: hibadh | 1 |
--- | q8 | gape | - | - | - | q8 | - | - | - | - | - | - | - | - | - | - | - | - |
region 17 (region 2 for Mmus)
retrieve target region: getEnsemblProteins.pl -h Mus_musculus -l 11 -i 96010695:96547315 -f 40e4 some_geneID_to_be_selected
scoreRatio_sum=9.28 log_scoreRatio_sum=0.17 focal_scoreRatio_sum=3.05
AlnScore=3848 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Mus_musculus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000343246 | HOXA1 | q1 | q1 | 213.3 | 11 | 96181917 | 96183226 | 1 | 2 | 97.9% | 43.3% | 942 | 0.67 / 0.68 = 0.99 | noComparaHits: Hoxb1 | 2 |
p4 | q2 | +/+ | ENSP00000222718 | HOXA2 | q2 | q2 | 296 | 11 | 96167901 | 96169710 | 1 | 2 | 98.9% | 48.3% | 1068 | 0.58 / 0.59 = 0.98 | between_species_paralog: HXB2_MOUSE | 2 |
p5 | q3 | +/+ | ENSP00000324884 | HOXA3 | q3 | q3 | 423 | 11 | 96160339 | 96162486 | 1 | 2 | 99.5% | 52.7% | 1215 | 0.51 / 0.49 = 1.04 | between_species_paralog: Hoxb3 | 2 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q4 | +/+ | ENSP00000353151 | HOXA4 | q4 | q4 | 173 | 11 | 96136110 | 96136442 | 1 | 1 | 34.7% | 73.9% | 333 | 0.63 / 0.74 = 0.85 | between_species_paralog: Hoxb4 | 3 |
p8 | q5 | +/+ | ENSP00000222726 | HOXA5 | q5 | q5 | 324 | 11 | 96119704 | 96121224 | 1 | 2 | 99.3% | 61.2% | 804 | 0.42 / 0.42 = 1 | between_species_paralog: Hoxb5 | 2 |
p9 | q6 | +/+ | ENSP00000222728 | HOXA6 | q6 | q6 | 251 | 11 | 96115267 | 96117015 | 1 | 2 | 99.6% | 57.3% | 669 | 0.49 / 0.49 = 1 | between_species_paralog: Hoxb6 | 2 |
p10 | q7 | +/+ | ENSP00000242159 | HOXA7 | q7 | q7 | 250 | 11 | 96102818 | 96105669 | 1 | 2 | 84.3% | 64.2% | 606 | 0.72 / 0.48 = 1.5 | between_species_paralog: Hoxb7 | 2 |
--- | q8 | gapp | - | - | - | q8 | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q9 | +/+ | ENSP00000343619 | HOXA9 | q9 | q9 | 222.1 | 11 | 96087632 | 96090946 | 1 | 2 | 69.5% | 57.1% | 528 | 0.56 / 0.61 = 0.92 | between_species_paralog: Hoxb9 | 4 |
p12 | --- | gapq | ENSP00000283921 | HOXA10 | q9 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gapq | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q10 | +/+ | ENSP00000222753 | HOXA13 | q10 | q10 | 265 | 11 | 96010695 | 96012310 | 1 | 2 | 63.1% | 56.2% | 702 | 0.58 / 0.58 = 1 | between_species_paralog: Hoxb13 | 2 |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 18 (region 2 for Mdom)
retrieve target region: getEnsemblProteins.pl -h Monodelphis_domestica -l 2 -i 201105043:201365745 -f 20e4 some_geneID_to_be_selected
scoreRatio_sum=9.22 log_scoreRatio_sum=0.07 focal_scoreRatio_sum=2.91
AlnScore=3790 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Monodelphis_domestica
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000343246 | HOXA1 | q1 | q1 | 209.2 | 2 | 201105043 | 201106545 | -1 | 2 | 98.5% | 42.9% | 921 | 0.67 / 0.68 = 0.99 | noComparaHits: HOXB1 | 2 |
p4 | q2 | +/+ | ENSP00000222718 | HOXA2 | q2 | q2 | 333 | 2 | 201116087 | 201118103 | -1 | 2 | 97.6% | 52% | 1059 | 0.58 / 0.54 = 1.07 | between_species_paralog: HOXB2 | 2 |
p5 | q3 | +/+ | ENSP00000324884 | HOXA3 | q3 | q3 | 422 | 2 | 201123983 | 201126209 | -1 | 2 | 98.6% | 52.3% | 1203 | 0.51 / 0.5 = 1.02 | between_species_paralog: HOXB3 | 2 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q4 | +/+ | ENSP00000353151 | HOXA4 | q4 | q4 | 173 | 2 | 201153484 | 201154089 | -1 | 1 | 59.4% | 49.8% | 606 | 0.63 / 0.74 = 0.85 | between_species_paralog: HOXB4 | 2 |
p8 | q5 | +/+ | ENSP00000222726 | HOXA5 | q5 | q5 | 313 | 2 | 201170725 | 201172260 | -1 | 2 | 100% | 58.9% | 813 | 0.42 / 0.44 = 0.95 | between_species_paralog: HOXB5 | 2 |
p9 | q6 | +/+ | ENSP00000222728 | HOXA6 | q6 | q6 | 263 | 2 | 201175565 | 201177388 | -1 | 2 | 100% | 53.1% | 750 | 0.49 / 0.47 = 1.04 | between_species_paralog: HOXB6 | 2 |
p10 | q7 | +/+ | ENSP00000242159 | HOXA7 | q7 | q7 | 249 | 2 | 201188182 | 201191355 | -1 | 2 | 85.2% | 64.1% | 612 | 0.72 / 0.48 = 1.5 | ortholog_one2many: HOXB7 | 2 |
p11 | q8 | +/+ | ENSP00000343619 | HOXA9 | q8 | q8 | 147 | 2 | 201204822 | 201205052 | -1 | 1 | 28.3% | 87% | 231 | 0.56 / 0.74 = 0.76 | between_species_paralog: HOXB9 | 3 |
p12 | --- | gapq | ENSP00000283921 | HOXA10 | q8 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gapq | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q9 | +/+ | ENSP00000222753 | HOXA13 | q9 | q9 | 276 | 2 | 201363763 | 201365745 | -1 | 2 | 74.5% | 50% | 843 | 0.58 / 0.56 = 1.04 | between_species_paralog: HOXB13 | 2 |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 19 (region 2 for Hsap)
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 17 -i 43594830:44160795 -f 42e4 some_geneID_to_be_selected
scoreRatio_sum=8.91 log_scoreRatio_sum=-0.08 focal_scoreRatio_sum=2.84
AlnScore=3728 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Homo_sapiens
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000343246 | HOXA1 | q1 | q1 | 218.4 | 17 | 43961905 | 43963265 | -1 | 2 | 98.5% | 42.7% | 924 | 0.67 / 0.67 = 1 | noComparaHits: HOXB1 | 2 |
p4 | q2 | +/+ | ENSP00000222718 | HOXA2 | q2 | q2 | 303 | 17 | 43975438 | 43977272 | -1 | 2 | 97.6% | 49.6% | 1062 | 0.58 / 0.58 = 1 | within_species_paralog: HOXB2 | 2 |
p5 | q3 | +/+ | ENSP00000324884 | HOXA3 | q3 | q3 | 411 | 17 | 43982698 | 43984835 | -1 | 2 | 99.1% | 52.3% | 1212 | 0.51 / 0.51 = 1 | within_species_paralog: HOXB3 | 2 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q4 | +/+ | ENSP00000353151 | HOXA4 | q4 | q4 | 246.9 | 17 | 44009110 | 44010680 | -1 | 2 | 92.5% | 47.3% | 741 | 0.63 / 0.63 = 1 | within_species_paralog: HOXB4 | 2 |
p8 | q5 | +/+ | ENSP00000222726 | HOXA5 | q5 | q5 | 326 | 17 | 44024573 | 44026043 | -1 | 2 | 100% | 60% | 825 | 0.42 / 0.42 = 1 | within_species_paralog: HOXB5 | 2 |
p9 | q6 | +/+ | ENSP00000222728 | HOXA6 | q6 | q6 | 251 | 17 | 44028777 | 44030511 | -1 | 2 | 99.6% | 56.8% | 669 | 0.49 / 0.49 = 1 | within_species_paralog: HOXB6 | 2 |
p10 | q7 | +/+ | ENSP00000242159 | HOXA7 | q7 | q7 | 135 | 17 | 44040254 | 44040460 | -1 | 1 | 30% | 89.9% | 207 | 0.72 / 0.72 = 1 | within_species_paralog: HOXB7 | 2 |
--- | q8 | gapp | - | - | - | q8 | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q9 | +/+ | ENSP00000343619 | HOXA9 | q9 | q9 | 228.6 | 17 | 44055264 | 44058630 | -1 | 2 | 91.9% | 48.4% | 699 | 0.56 / 0.6 = 0.93 | within_species_paralog: HOXB9 | 4 |
p12 | --- | gapq | ENSP00000283921 | HOXA10 | q9 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gapq | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q10 | +/+ | ENSP00000222753 | HOXA13 | q10 | q10 | 261 | 17 | 44159160 | 44160795 | -1 | 2 | 63.1% | 55.9% | 711 | 0.58 / 0.59 = 0.98 | within_species_paralog: HOXB13 | 3 |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 20 (region 2 for Trub)
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_41 -i 484922:661535 -f 13e4 some_geneID_to_be_selected
scoreRatio_sum=9.01 log_scoreRatio_sum=-1.14 focal_scoreRatio_sum=2.69
AlnScore=3605 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Takifugu_rubripes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000343246 | HOXA1 | q1 | q1 | 186.5 | scaffold_41 | 659492 | 661535 | 1 | 2 | 79.4% | 41.7% | 858 | 0.67 / 0.72 = 0.93 | noComparaHits: Q6IEI1_FUGRU | 3 |
p4 | q2 | +/+ | ENSP00000222718 | HOXA2 | q2 | q2 | 301 | scaffold_41 | 642967 | 645484 | 1 | 2 | 100% | 45.1% | 1239 | 0.58 / 0.59 = 0.98 | between_species_paralog: Q6IEI0_FUGRU | 3 |
p5 | q3 | +/+ | ENSP00000324884 | HOXA3 | q3 | q3 | 388 | scaffold_41 | 633502 | 637089 | 1 | 2 | 100% | 49.6% | 1419 | 0.51 / 0.54 = 0.94 | between_species_paralog: Q6IEH9_FUGRU | 2 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q4 | +/+ | ENSP00000353151 | HOXA4 | q4 | q4 | 231.5 | scaffold_41 | 601559 | 603764 | 1 | 2 | 94.1% | 44.7% | 738 | 0.63 / 0.66 = 0.95 | between_species_paralog: HXB4_FUGRU | 1 |
p8 | q5 | +/+ | ENSP00000222726 | HOXA5 | q5 | q5 | 248.2 | scaffold_41 | 584309 | 586617 | 1 | 2 | 88.5% | 54.3% | 747 | 0.42 / 0.55 = 0.76 | between_species_paralog: NEWSINFRUG00000136624 | 4 |
p9 | q6 | +/+ | ENSP00000222728 | HOXA6 | q6 | q6 | 216.4 | scaffold_41 | 578118 | 580620 | 1 | 2 | 99.1% | 49.5% | 798 | 0.49 / 0.56 = 0.87 | between_species_paralog: NEWSINFRUG00000165134 | 2 |
p10 | q7 | +/+ | ENSP00000242159 | HOXA7 | q6 | q7 | 113 | scaffold_41 | 555309 | 555512 | 1 | 1 | 29.1% | 77.9% | 204 | 0.72 / 0.76 = 0.95 | noComparaHits: NEWSINFRUG00000136620 | 6 |
p11 | q8 | +/+ | ENSP00000343619 | HOXA9 | q8 | q8 | 144 | scaffold_41 | 540964 | 541197 | 1 | 1 | 28.7% | 85.9% | 234 | 0.56 / 0.75 = 0.75 | noComparaHits: NEWSINFRUG00000160069 | 5 |
p12 | --- | gapq | ENSP00000283921 | HOXA10 | q8 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gapq | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q9 | +/+ | ENSP00000222753 | HOXA13 | q9 | q9 | 324 | scaffold_41 | 501809 | 503547 | 1 | 2 | 99.7% | 49.4% | 954 | 0.58 / 0.49 = 1.18 | between_species_paralog: NEWSINFRUG00000163355 | 3 |
p15 | q10 | +/+ | ENSP00000222761 | EVX1 | q10 | q10 | 171.4 | scaffold_41 | 484922 | 487308 | -1 | 2 | 48.4% | 49.3% | 603 | 0.51 / 0.73 = 0.7 | noComparaHits: | 3 |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 21 (region 2 for Xtro)
retrieve target region: getEnsemblProteins.pl -h Xenopus_tropicalis -l scaffold_163 -i 534718:664035 -f 97e3 some_geneID_to_be_selected
scoreRatio_sum=8.77 log_scoreRatio_sum=-0.24 focal_scoreRatio_sum=3.17
AlnScore=3470 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Xenopus_tropicalis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000343246 | HOXA1 | q1 | q1 | 199.9 | scaffold_163 | 534721 | 536091 | -1 | 2 | 98.2% | 42.4% | 894 | 0.67 / 0.7 = 0.96 | noComparaHits: hoxd1 | 3 |
p4 | --- | gapq | ENSP00000222718 | HOXA2 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q2 | +/+ | ENSP00000324884 | HOXA3 | q2 | q2 | 401 | scaffold_163 | 567719 | 569313 | -1 | 2 | 100% | 48.8% | 1212 | 0.51 / 0.52 = 0.98 | between_species_paralog: HOXD3 | 2 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q3 | +/+ | ENSP00000353151 | HOXA4 | q3 | q3 | 161 | scaffold_163 | 582397 | 582651 | -1 | 1 | 26.6% | 88.2% | 255 | 0.63 / 0.76 = 0.83 | between_species_paralog: HOXD4 | 3 |
p8 | --- | gapq | ENSP00000222726 | HOXA5 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000222728 | HOXA6 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q4 | +/+ | ENSP00000242159 | HOXA7 | q3 | q4 | 114 | scaffold_163 | 608334 | 608555 | -1 | 1 | 31.7% | 73% | 222 | 0.72 / 0.76 = 0.95 | noComparaHits: HOXD8 | 10 |
p11 | q5 | +/+ | ENSP00000343619 | HOXA9 | q5 | q5 | 242 | scaffold_163 | 619622 | 620793 | -1 | 2 | 98.5% | 50% | 768 | 0.56 / 0.57 = 0.98 | between_species_paralog: HOXD9 | 3 |
p12 | q6 | +/+ | ENSP00000283921 | HOXA10 | q6 | q6 | 264 | scaffold_163 | 624911 | 627892 | -1 | 2 | 73% | 53.1% | 720 | 0.64 / 0.63 = 1.02 | noComparaHits: HOXD10 | 2 |
p13 | q7 | +/+ | ENSP00000006015 | HOXA11 | q7 | q7 | 291 | scaffold_163 | 633884 | 635447 | -1 | 2 | 87.5% | 55.4% | 819 | 0.46 / 0.47 = 0.98 | noComparaHits: | 2 |
p14 | q8 | +/+ | ENSP00000222753 | HOXA13 | q8 | q8 | 260 | scaffold_163 | 649607 | 652578 | -1 | 2 | 78.6% | 49.5% | 822 | 0.58 / 0.59 = 0.98 | between_species_paralog: HOXD13 | 2 |
p15 | q9 | +/+ | ENSP00000222761 | EVX1 | q9 | q9 | 333 | scaffold_163 | 661562 | 664035 | 1 | 2 | 61.9% | 63.5% | 828 | 0.51 / 0.47 = 1.09 | between_species_paralog: EVX2 | 2 |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 22 (region 2 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l groupXI -i 1481396:1740602 -f 19e4 some_geneID_to_be_selected
scoreRatio_sum=8.85 log_scoreRatio_sum=-1.35 focal_scoreRatio_sum=2.68
AlnScore=3430 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000343246 | HOXA1 | q1 | q1 | 131 | groupXI | 1740267 | 1740599 | 1 | 1 | 34% | 61.4% | 333 | 0.67 / 0.8 = 0.84 | noComparaHits: ENSGACG00000005635 | 3 |
p4 | q2 | +/+ | ENSP00000222718 | HOXA2 | q2 | q2 | 285 | groupXI | 1720324 | 1722908 | 1 | 2 | 100% | 43.1% | 1299 | 0.58 / 0.61 = 0.95 | between_species_paralog: ENSGACG00000005633 | 3 |
p5 | q3 | +/+ | ENSP00000324884 | HOXA3 | q3 | q3 | 341.5 | groupXI | 1709837 | 1713575 | 1 | 2 | 82.4% | 52.2% | 1140 | 0.51 / 0.59 = 0.86 | between_species_paralog: ENSGACG00000005631 | 3 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q4 | +/+ | ENSP00000353151 | HOXA4 | q4 | q4 | 225.9 | groupXI | 1677309 | 1679553 | 1 | 2 | 89.4% | 44.6% | 738 | 0.63 / 0.66 = 0.95 | between_species_paralog: ENSGACG00000005628 | 1 |
p8 | q5 | +/+ | ENSP00000222726 | HOXA5 | q5 | q5 | 287.1 | groupXI | 1659578 | 1661482 | 1 | 3 | 95.2% | 53% | 888 | 0.42 / 0.49 = 0.86 | between_species_paralog: ENSGACG00000005626 | 2 |
p9 | q6 | +/+ | ENSP00000222728 | HOXA6 | q6 | q6 | 143 | groupXI | 1655556 | 1655801 | 1 | 1 | 35.2% | 82.9% | 246 | 0.49 / 0.71 = 0.69 | noComparaHits: ENSGACG00000005623 | 2 |
p10 | q7 | +/+ | ENSP00000242159 | HOXA7 | q7 | q7 | 129 | groupXI | 1639386 | 1639658 | 1 | 1 | 44.3% | 61.8% | 273 | 0.72 / 0.73 = 0.99 | noComparaHits: | 3 |
p11 | q8 | +/+ | ENSP00000343619 | HOXA9 | q8 | q8 | 150 | groupXI | 1626146 | 1626442 | 1 | 1 | 34.6% | 73.7% | 297 | 0.56 / 0.73 = 0.77 | noComparaHits: | 6 |
p12 | --- | gapq | ENSP00000283921 | HOXA10 | q8 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gapq | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q9 | +/+ | ENSP00000222753 | HOXA13 | q9 | q9 | 334 | groupXI | 1524174 | 1526030 | 1 | 2 | 99.7% | 50.5% | 954 | 0.58 / 0.47 = 1.23 | between_species_paralog: ENSGACG00000005617 | 3 |
p15 | q10 | +/+ | ENSP00000222761 | EVX1 | q10 | q10 | 177.5 | groupXI | 1481396 | 1484328 | -1 | 2 | 44.2% | 48.3% | 612 | 0.51 / 0.72 = 0.71 | noComparaHits: | 3 |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 23 (region 3 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_2344 -i 19832:66183 -f 35e3 some_geneID_to_be_selected
scoreRatio_sum=8.66 log_scoreRatio_sum=1.23 focal_scoreRatio_sum=2.48
AlnScore=3414 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000343246 | HOXA1 | q1 | q1 | 381 | contig_2344 | 19832 | 21130 | -1 | 2 | 99.4% | 58.1% | 987 | 0.67 / 0.43 = 1.56 | noComparaHits: ENSGACG00000007085 | 1 |
p4 | q2 | +/+ | ENSP00000222718 | HOXA2 | q2 | q2 | 485 | contig_2344 | 24869 | 26543 | -1 | 2 | 97.1% | 70.2% | 1047 | 0.58 / 0.34 = 1.71 | noComparaHits: ENSGACG00000007090 | 1 |
p5 | q3 | +/+ | ENSP00000324884 | HOXA3 | q3 | q3 | 493 | contig_2344 | 30826 | 34266 | -1 | 2 | 100% | 60.7% | 1251 | 0.51 / 0.41 = 1.24 | noComparaHits: ENSGACG00000007094 | 1 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q4 | +/+ | ENSP00000353151 | HOXA4 | q4 | q4 | 164 | contig_2344 | 45058 | 45318 | -1 | 1 | 27.2% | 87.4% | 261 | 0.63 / 0.76 = 0.83 | noComparaHits: ENSGACG00000007100 | 2 |
p8 | q5 | +/+ | ENSP00000222726 | HOXA5 | q5 | q5 | 356 | contig_2344 | 54388 | 55797 | -1 | 2 | 100% | 65.4% | 840 | 0.42 / 0.36 = 1.17 | noComparaHits: ENSGACG00000007108 | 1 |
p9 | --- | gapq | ENSP00000222728 | HOXA6 | q6 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q6 | +/+ | ENSP00000242159 | HOXA7 | q6 | q6 | 230.7 | contig_2344 | 60661 | 62158 | -1 | 2 | 94.8% | 55.2% | 633 | 0.72 / 0.52 = 1.38 | noComparaHits: ENSGACG00000007112 | 1 |
p11 | q7 | +/+ | ENSP00000343619 | HOXA9 | q7 | q7 | 151 | contig_2344 | 65911 | 66165 | -1 | 1 | 31.3% | 83.5% | 255 | 0.56 / 0.73 = 0.77 | noComparaHits: | 5 |
p12 | --- | gape | ENSP00000283921 | HOXA10 | q7 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 24 (region 4 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_1095 -i 18240:57714 -f 30e3 some_geneID_to_be_selected
scoreRatio_sum=11.61 log_scoreRatio_sum=2.25 focal_scoreRatio_sum=3
AlnScore=3356 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000005587 | SKAP2 | q1 | q1 | 213 | contig_1095 | 55281 | 57714 | 1 | 3 | 30.9% | 81.1% | 333 | 0.91 / 0.68 = 1.34 | noComparaHits: ENSGACG00000008317 | 1 |
p2 | --- | gapq | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gapq | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q2 | +/+ | ENSP00000222718 | HOXA2 | q2 | q2 | 400 | contig_1095 | 48561 | 50128 | 1 | 2 | 100% | 58.6% | 1041 | 0.58 / 0.45 = 1.29 | noComparaHits: ENSGACG00000008314 | 2 |
p5 | --- | gapq | ENSP00000324884 | HOXA3 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000353151 | HOXA4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000222726 | HOXA5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000222728 | HOXA6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gapq | ENSP00000242159 | HOXA7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q3 | +/+ | ENSP00000343619 | HOXA9 | q3 | q3 | 208 | contig_1095 | 42380 | 43568 | 1 | 2 | 92.6% | 44.5% | 738 | 0.56 / 0.63 = 0.89 | noComparaHits: ENSGACG00000008310 | 4 |
p12 | q4 | +/+ | ENSP00000283921 | HOXA10 | q4 | q4 | 164 | contig_1095 | 39783 | 40055 | 1 | 1 | 23.2% | 86.8% | 273 | 0.64 / 0.77 = 0.83 | noComparaHits: ENSGACG00000008303 | 3 |
p13 | q5 | +/+ | ENSP00000006015 | HOXA11 | q5 | q5 | 343 | contig_1095 | 32617 | 34353 | 1 | 2 | 100% | 58.8% | 861 | 0.46 / 0.37 = 1.24 | noComparaHits: ENSGACG00000008297 | 2 |
p14 | q6 | +/+ | ENSP00000222753 | HOXA13 | q6 | q6 | 343 | contig_1095 | 26357 | 27479 | 1 | 2 | 97.4% | 54% | 846 | 0.58 / 0.46 = 1.26 | noComparaHits: ENSGACG00000008296 | 2 |
p15 | --- | gapq | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gapq | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | q7 | +/+ | ENSP00000265395 | HIBADH | q7 | q7 | 551.9 | contig_1095 | 18240 | 22598 | 1 | 7 | 90.5% | 77.2% | 999 | 1 / 0.21 = 4.76 | noComparaHits: ENSGACG00000008229 | 1 |
region 25 (region 5 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l groupXX -i 9702480:9741954 -f 30e3 some_geneID_to_be_selected
scoreRatio_sum=11.61 log_scoreRatio_sum=2.25 focal_scoreRatio_sum=3
AlnScore=3356 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000005587 | SKAP2 | q1 | q1 | 213 | groupXX | 9739521 | 9741954 | 1 | 3 | 30.9% | 81.1% | 333 | 0.91 / 0.68 = 1.34 | ortholog_one2one: ENSGACG00000008317 | 1 |
p2 | --- | gapq | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gapq | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q2 | +/+ | ENSP00000222718 | HOXA2 | q2 | q2 | 400 | groupXX | 9732801 | 9734368 | 1 | 2 | 100% | 58.6% | 1041 | 0.58 / 0.45 = 1.29 | ortholog_one2many: ENSGACG00000008314 | 2 |
p5 | --- | gapq | ENSP00000324884 | HOXA3 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000353151 | HOXA4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000222726 | HOXA5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000222728 | HOXA6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gapq | ENSP00000242159 | HOXA7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q3 | +/+ | ENSP00000343619 | HOXA9 | q3 | q3 | 208 | groupXX | 9726620 | 9727808 | 1 | 2 | 92.6% | 44.5% | 738 | 0.56 / 0.63 = 0.89 | ortholog_one2many: ENSGACG00000008310 | 4 |
p12 | q4 | +/+ | ENSP00000283921 | HOXA10 | q4 | q4 | 164 | groupXX | 9724023 | 9724295 | 1 | 1 | 23.2% | 86.8% | 273 | 0.64 / 0.77 = 0.83 | apparent_ortholog_one2one: ENSGACG00000008303 | 3 |
p13 | q5 | +/+ | ENSP00000006015 | HOXA11 | q5 | q5 | 343 | groupXX | 9716857 | 9718593 | 1 | 2 | 100% | 58.8% | 861 | 0.46 / 0.37 = 1.24 | ortholog_one2many: ENSGACG00000008297 | 2 |
p14 | q6 | +/+ | ENSP00000222753 | HOXA13 | q6 | q6 | 343 | groupXX | 9710597 | 9711719 | 1 | 2 | 97.4% | 54% | 846 | 0.58 / 0.46 = 1.26 | ortholog_one2many: ENSGACG00000008296 | 2 |
p15 | --- | gapq | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gapq | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | q7 | +/+ | ENSP00000265395 | HIBADH | q7 | q7 | 551.9 | groupXX | 9702480 | 9706838 | 1 | 7 | 90.5% | 77.2% | 999 | 1 / 0.21 = 4.76 | ortholog_one2many: ENSGACG00000008229 | 1 |
region 26 (region 3 for Xtro)
retrieve target region: getEnsemblProteins.pl -h Xenopus_tropicalis -l scaffold_226 -i 280901:558409 -f 21e4 some_geneID_to_be_selected
scoreRatio_sum=8.05 log_scoreRatio_sum=-1.07 focal_scoreRatio_sum=3.27
AlnScore=3342 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Xenopus_tropicalis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q1 | +/+ | ENSP00000324884 | HOXA3 | q1 | q1 | 275.2 | scaffold_226 | 555793 | 558409 | 1 | 2 | 100% | 41.1% | 1215 | 0.51 / 0.67 = 0.76 | noComparaHits: ENSXETG00000025181 | 4 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q2 | +/+ | ENSP00000353151 | HOXA4 | q2 | q2 | 230.9 | scaffold_226 | 463073 | 464228 | 1 | 2 | 90.9% | 46% | 711 | 0.63 / 0.66 = 0.95 | between_species_paralog: HOXC4 | 2 |
p8 | q3 | +/+ | ENSP00000222726 | HOXA5 | q3 | q3 | 191.8 | scaffold_226 | 422390 | 423762 | 1 | 2 | 94.4% | 44.7% | 663 | 0.42 / 0.65 = 0.65 | noComparaHits: HOXC5 | 3 |
p9 | q4 | +/+ | ENSP00000222728 | HOXA6 | q4 | q4 | 219.9 | scaffold_226 | 418988 | 420462 | 1 | 2 | 100% | 49.2% | 672 | 0.49 / 0.56 = 0.87 | ortholog_one2many: HOXC6 | 3 |
p10 | q5 | +/+ | ENSP00000242159 | HOXA7 | q4 | q5 | 112 | scaffold_226 | 398267 | 398527 | 1 | 1 | 37.4% | 65.5% | 261 | 0.72 / 0.76 = 0.95 | noComparaHits: hoxc8 | noData |
p11 | q6 | +/+ | ENSP00000343619 | HOXA9 | q6 | q6 | 249 | scaffold_226 | 388156 | 390492 | 1 | 2 | 100% | 50.2% | 780 | 0.56 / 0.56 = 1 | noComparaHits: hoxc9 | 2 |
p12 | q7 | +/+ | ENSP00000283921 | HOXA10 | q7 | q7 | 249.1 | scaffold_226 | 374651 | 378201 | 1 | 2 | 97.2% | 40.8% | 1053 | 0.64 / 0.65 = 0.98 | noComparaHits: HOXC10 | 3 |
p13 | q8 | +/+ | ENSP00000006015 | HOXA11 | q8 | q8 | 275 | scaffold_226 | 362428 | 364628 | 1 | 2 | 99.7% | 48.1% | 870 | 0.46 / 0.5 = 0.92 | between_species_paralog: HOXC11 | 3 |
p14 | q9 | +/+ | ENSP00000222753 | HOXA13 | q9 | q9 | 256 | scaffold_226 | 280901 | 284139 | 1 | 2 | 99.5% | 42.5% | 900 | 0.58 / 0.6 = 0.97 | between_species_paralog: ENSXETG00000025184 | 3 |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 27 (region 2 for Mmul)
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 16 -i 32385757:32953200 -f 43e4 some_geneID_to_be_selected
scoreRatio_sum=8.33 log_scoreRatio_sum=-0.73 focal_scoreRatio_sum=2.77
AlnScore=3338 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Macaca_mulatta
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000343246 | HOXA1 | q1 | q1 | 213.7 | 16 | 32758424 | 32759792 | -1 | 2 | 98.5% | 41.4% | 933 | 0.67 / 0.68 = 0.99 | noComparaHits: HOXB1 | 2 |
p4 | q2 | +/+ | ENSP00000222718 | HOXA2 | q2 | q2 | 184 | 16 | 32771912 | 32772586 | -1 | 1 | 64.4% | 48% | 675 | 0.58 / 0.75 = 0.77 | noComparaHits: ENSMMUG00000022211 | 2 |
p5 | q3 | +/+ | ENSP00000324884 | HOXA3 | q3 | q3 | 312 | 16 | 32779070 | 32781189 | -1 | 2 | 87.6% | 46.7% | 1059 | 0.51 / 0.63 = 0.81 | noComparaHits: | 3 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q4 | +/+ | ENSP00000353151 | HOXA4 | q4 | q4 | 169 | 16 | 32806478 | 32806789 | -1 | 1 | 32.5% | 75% | 312 | 0.63 / 0.75 = 0.84 | between_species_paralog: HOXB4 | 2 |
p8 | q5 | +/+ | ENSP00000222726 | HOXA5 | q5 | q5 | 326 | 16 | 32821961 | 32823429 | -1 | 2 | 100% | 60% | 825 | 0.42 / 0.42 = 1 | between_species_paralog: HOXB5 | 2 |
p9 | q6 | +/+ | ENSP00000222728 | HOXA6 | q6 | q6 | 250 | 16 | 32826127 | 32827850 | -1 | 2 | 99.6% | 56.8% | 669 | 0.49 / 0.5 = 0.98 | between_species_paralog: HOXB6 | 2 |
p10 | q7 | +/+ | ENSP00000242159 | HOXA7 | q7 | q7 | 137 | 16 | 32837590 | 32837805 | -1 | 1 | 31.3% | 88.9% | 216 | 0.72 / 0.71 = 1.01 | between_species_paralog: HOXB7 | 2 |
--- | q8 | gapp | - | - | - | q8 | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q9 | +/+ | ENSP00000343619 | HOXA9 | q9 | q9 | 231.7 | 16 | 32852655 | 32856017 | -1 | 2 | 91.9% | 48.8% | 699 | 0.56 / 0.59 = 0.95 | between_species_paralog: HOXB9 | 3 |
p12 | --- | gapq | ENSP00000283921 | HOXA10 | q9 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gapq | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q10 | +/+ | ENSP00000222753 | HOXA13 | q10 | q10 | 260 | 16 | 32951575 | 32953200 | -1 | 2 | 63.1% | 55.9% | 690 | 0.58 / 0.59 = 0.98 | between_species_paralog: HOXB13 | 2 |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 28 (region 3 for Mdom)
retrieve target region: getEnsemblProteins.pl -h Monodelphis_domestica -l 4 -i 187418008:187538614 -f 90e3 some_geneID_to_be_selected
scoreRatio_sum=8.49 log_scoreRatio_sum=-0.54 focal_scoreRatio_sum=3.08
AlnScore=3304 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Monodelphis_domestica
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000343246 | HOXA1 | q1 | q1 | 132 | 4 | 187538282 | 187538614 | 1 | 1 | 33.1% | 61.3% | 333 | 0.67 / 0.8 = 0.84 | noComparaHits: HOXD1 | 3 |
p4 | --- | gapq | ENSP00000222718 | HOXA2 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q2 | +/+ | ENSP00000324884 | HOXA3 | q2 | q2 | 404 | 4 | 187515862 | 187518908 | 1 | 2 | 100% | 51.6% | 1263 | 0.51 / 0.52 = 0.98 | between_species_paralog: HOXD3 | 3 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q3 | +/+ | ENSP00000353151 | HOXA4 | q3 | q3 | 163 | 4 | 187498359 | 187498607 | 1 | 1 | 25.9% | 91.6% | 249 | 0.63 / 0.76 = 0.83 | between_species_paralog: HOXD4 | 3 |
p8 | --- | gapq | ENSP00000222726 | HOXA5 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000222728 | HOXA6 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q4 | +/+ | ENSP00000242159 | HOXA7 | q3,q4 | q4 | 116 | 4 | 187473617 | 187473901 | 1 | 1 | 40.4% | 62.1% | 285 | 0.72 / 0.76 = 0.95 | noComparaHits: HOXD8 | 7 |
p11 | q5 | +/+ | ENSP00000343619 | HOXA9 | q5 | q5 | 228 | 4 | 187464529 | 187465934 | 1 | 2 | 70.2% | 61.3% | 540 | 0.56 / 0.6 = 0.93 | between_species_paralog: HOXD9 | 2 |
p12 | q6 | +/+ | ENSP00000283921 | HOXA10 | q6 | q6 | 252.4 | 4 | 187458207 | 187460683 | 1 | 2 | 73% | 50.5% | 723 | 0.64 / 0.65 = 0.98 | noComparaHits: HOXD10 | 2 |
p13 | q7 | +/+ | ENSP00000006015 | HOXA11 | q7 | q7 | 312 | 4 | 187447944 | 187449656 | 1 | 2 | 90.1% | 57.3% | 882 | 0.46 / 0.43 = 1.07 | between_species_paralog: HOXD11 | 2 |
p14 | q8 | +/+ | ENSP00000222753 | HOXA13 | q8 | q8 | 262 | 4 | 187431208 | 187433161 | 1 | 2 | 84.8% | 45.9% | 999 | 0.58 / 0.59 = 0.98 | between_species_paralog: HOXD13 | 3 |
p15 | q9 | +/+ | ENSP00000222761 | EVX1 | q9 | q9 | 285 | 4 | 187418008 | 187420248 | -1 | 2 | 47.2% | 66.8% | 639 | 0.51 / 0.55 = 0.93 | between_species_paralog: EVX2 | 2 |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 29 (region 2 for Cfam)
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 9 -i 27762688:28287891 -f 39e4 some_geneID_to_be_selected
scoreRatio_sum=8.33 log_scoreRatio_sum=-0.79 focal_scoreRatio_sum=2.73
AlnScore=3297 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Canis_familiaris
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000343246 | HOXA1 | q1 | q1 | 207.6 | 9 | 28119786 | 28121196 | -1 | 2 | 97.9% | 43.1% | 927 | 0.67 / 0.69 = 0.97 | noComparaHits: 491052 | 2 |
p4 | q2 | +/+ | ENSP00000222718 | HOXA2 | q2 | q2 | 312.8 | 9 | 28131329 | 28133190 | -1 | 3 | 70.2% | 61.9% | 795 | 0.58 / 0.57 = 1.02 | between_species_paralog: HOXB2 | 2 |
p5 | q3 | +/+ | ENSP00000324884 | HOXA3 | q3 | q3 | 372.3 | 9 | 28138727 | 28140950 | -1 | 2 | 100% | 47.2% | 1257 | 0.51 / 0.55 = 0.93 | noComparaHits: ENSCAFG00000016845 | 3 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q4 | +/+ | ENSP00000353151 | HOXA4 | q4 | q4 | 162 | 9 | 28165646 | 28165915 | -1 | 1 | 28.1% | 82.2% | 270 | 0.63 / 0.76 = 0.83 | between_species_paralog: HOXB4 | 3 |
--- | q5 | gapp | - | - | - | q5 | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q6 | +/+ | ENSP00000222726 | HOXA5 | q6 | q6 | 167 | 9 | 28182541 | 28183107 | -1 | 1 | 70% | 48.2% | 567 | 0.42 / 0.7 = 0.6 | between_species_paralog: 491056 | 3 |
p9 | q7 | +/+ | ENSP00000222728 | HOXA6 | q7 | q7 | 251 | 9 | 28185792 | 28187509 | -1 | 2 | 99.6% | 56.8% | 669 | 0.49 / 0.49 = 1 | between_species_paralog: 491056 | 2 |
p10 | q8 | +/+ | ENSP00000242159 | HOXA7 | q8 | q8 | 139 | 9 | 28197368 | 28197604 | -1 | 1 | 34.3% | 82.3% | 237 | 0.72 / 0.71 = 1.01 | between_species_paralog: 608962 | 2 |
--- | q9 | gapp | - | - | - | q9 | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q10 | +/+ | ENSP00000343619 | HOXA9 | q10 | q10 | 231 | 9 | 28212641 | 28216111 | -1 | 2 | 91.9% | 48.8% | 699 | 0.56 / 0.59 = 0.95 | between_species_paralog: 608958 | 2 |
p12 | --- | gapq | ENSP00000283921 | HOXA10 | q10 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gapq | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q11 | +/+ | ENSP00000222753 | HOXA13 | q11 | q11 | 273 | 9 | 28285965 | 28287891 | -1 | 2 | 70.9% | 54% | 762 | 0.58 / 0.57 = 1.02 | between_species_paralog: 491060 | 2 |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 30 (region 3 for Mmus)
retrieve target region: getEnsemblProteins.pl -h Mus_musculus -l 2 -i 74456458:74565225 -f 82e3 some_geneID_to_be_selected
scoreRatio_sum=8.45 log_scoreRatio_sum=-0.6 focal_scoreRatio_sum=3.09
AlnScore=3251 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Mus_musculus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000343246 | HOXA1 | q1 | q1 | 134 | 2 | 74564893 | 74565225 | 1 | 1 | 33.1% | 62.2% | 333 | 0.67 / 0.8 = 0.84 | noComparaHits: Hoxd1 | 3 |
p4 | --- | gapq | ENSP00000222718 | HOXA2 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q2 | +/+ | ENSP00000324884 | HOXA3 | q2 | q2 | 407 | 2 | 74544899 | 74547915 | 1 | 2 | 100% | 50.9% | 1260 | 0.51 / 0.51 = 1 | between_species_paralog: Hoxd3 | 3 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q3 | +/+ | ENSP00000353151 | HOXA4 | q3 | q3 | 236.6 | 2 | 74528118 | 74529387 | 1 | 2 | 95.6% | 45.6% | 741 | 0.63 / 0.65 = 0.97 | noComparaHits: Hoxd3 | 2 |
p8 | --- | gapq | ENSP00000222726 | HOXA5 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000222728 | HOXA6 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q4 | +/+ | ENSP00000242159 | HOXA7 | q3 | q4 | 115 | 2 | 74507349 | 74507576 | 1 | 1 | 33.5% | 71.8% | 228 | 0.72 / 0.76 = 0.95 | noComparaHits: Hoxd8 | noData |
p11 | q5 | +/+ | ENSP00000343619 | HOXA9 | q5 | q5 | 237.6 | 2 | 74498895 | 74500242 | 1 | 2 | 78.7% | 55.6% | 693 | 0.56 / 0.58 = 0.97 | between_species_paralog: Hoxd9 | 3 |
p12 | q6 | +/+ | ENSP00000283921 | HOXA10 | q6 | q6 | 261 | 2 | 74492831 | 74495204 | 1 | 2 | 73% | 52.6% | 723 | 0.64 / 0.64 = 1 | noComparaHits: Hoxd10 | 2 |
p13 | q7 | +/+ | ENSP00000006015 | HOXA11 | q7 | q7 | 295.8 | 2 | 74483238 | 74484971 | 1 | 3 | 77% | 63.6% | 690 | 0.46 / 0.46 = 1 | between_species_paralog: Hoxd11 | 2 |
p14 | q8 | +/+ | ENSP00000222753 | HOXA13 | q8 | q8 | 140 | 2 | 74469188 | 74470024 | 1 | 1 | 72.9% | 36.5% | 837 | 0.58 / 0.78 = 0.74 | between_species_paralog: Hoxd13 | 3 |
p15 | q9 | +/+ | ENSP00000222761 | EVX1 | q9 | q9 | 302 | 2 | 74456458 | 74458845 | -1 | 2 | 65.6% | 51.4% | 963 | 0.51 / 0.52 = 0.98 | between_species_paralog: Evx2 | 2 |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 31 (region 3 for Trub)
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_48 -i 1047123:1092565 -f 34e3 some_geneID_to_be_selected
scoreRatio_sum=10.04 log_scoreRatio_sum=1.78 focal_scoreRatio_sum=2.63
AlnScore=3220 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Takifugu_rubripes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000005587 | SKAP2 | q1 | q1 | 315 | scaffold_48 | 1047123 | 1053159 | -1 | 5 | 53.5% | 62.9% | 705 | 0.91 / 0.53 = 1.72 | ortholog_one2one: NEWSINFRUG00000138064 | 1 |
p2 | --- | gapq | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gapq | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q2 | +/+ | ENSP00000222718 | HOXA2 | q2 | q2 | 392 | scaffold_48 | 1056655 | 1058129 | -1 | 2 | 93.9% | 62.4% | 978 | 0.58 / 0.46 = 1.26 | ortholog_one2many: NEWSINFRUG00000138063 | 2 |
p5 | --- | gapq | ENSP00000324884 | HOXA3 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000353151 | HOXA4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000222726 | HOXA5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000222728 | HOXA6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gapq | ENSP00000242159 | HOXA7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q3 | +/+ | ENSP00000343619 | HOXA9 | q3 | q3 | 150 | scaffold_48 | 1063099 | 1063347 | -1 | 1 | 30.5% | 83.1% | 249 | 0.56 / 0.73 = 0.77 | ortholog_one2many: NEWSINFRUG00000138062 | 4 |
p12 | q4 | +/+ | ENSP00000283921 | HOXA10 | q4 | q4 | 170 | scaffold_48 | 1066192 | 1066464 | -1 | 1 | 23.2% | 90.1% | 273 | 0.64 / 0.76 = 0.84 | apparent_ortholog_one2one: NEWSINFRUG00000138061 | 3 |
--- | q5 | gapp | - | - | - | q5 | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | q6 | +/+ | ENSP00000006015 | HOXA11 | q6 | q6 | 332 | scaffold_48 | 1078632 | 1080375 | -1 | 2 | 100% | 56.8% | 858 | 0.46 / 0.39 = 1.18 | ortholog_one2many: NEWSINFRUG00000138060 | 2 |
p14 | q7 | +/+ | ENSP00000222753 | HOXA13 | q7 | q7 | 312 | scaffold_48 | 1084986 | 1085990 | -1 | 1 | 100% | 46.9% | 1005 | 0.58 / 0.51 = 1.14 | ortholog_one2many: NEWSINFRUG00000132089 | 4 |
p15 | --- | gapq | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gapq | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | q8 | +/+ | ENSP00000265395 | HIBADH | q8 | q8 | 478.8 | scaffold_48 | 1089147 | 1092565 | -1 | 5 | 91.4% | 61.8% | 1245 | 1 / 0.32 = 3.13 | ortholog_one2many: NEWSINFRUG00000164284 | 1 |
region 32 (region 4 for Xtro)
retrieve target region: getEnsemblProteins.pl -h Xenopus_tropicalis -l scaffold_334 -i 486970:585008 -f 74e3 some_geneID_to_be_selected
scoreRatio_sum=8.37 log_scoreRatio_sum=-0.73 focal_scoreRatio_sum=2.78
AlnScore=3211 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Xenopus_tropicalis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000343246 | HOXA1 | q1 | q1 | 255 | scaffold_334 | 486970 | 489038 | -1 | 2 | 96.4% | 46.1% | 900 | 0.67 / 0.61 = 1.1 | ortholog_one2many: ENSXETG00000021964 | 2 |
p4 | q2 | +/+ | ENSP00000222718 | HOXA2 | q2 | q2 | 311 | scaffold_334 | 505830 | 508165 | -1 | 2 | 95.5% | 50.8% | 999 | 0.58 / 0.57 = 1.02 | noComparaHits: ENSXETG00000027353 | 2 |
p5 | q3 | +/+ | ENSP00000324884 | HOXA3 | q3 | q3 | 399 | scaffold_334 | 512901 | 514755 | -1 | 2 | 100% | 51.3% | 1170 | 0.51 / 0.52 = 0.98 | between_species_paralog: hoxb3 | 3 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q4 | +/+ | ENSP00000353151 | HOXA4 | q4 | q4 | 147 | scaffold_334 | 533000 | 533314 | -1 | 1 | 32.5% | 69.5% | 315 | 0.63 / 0.78 = 0.81 | between_species_paralog: hoxb4 | 4 |
p8 | q5 | +/+ | ENSP00000222726 | HOXA5 | q5 | q5 | 276 | scaffold_334 | 546778 | 548144 | -1 | 2 | 100% | 55.3% | 780 | 0.42 / 0.5 = 0.84 | between_species_paralog: HOXB5 | 2 |
p9 | q6 | +/+ | ENSP00000222728 | HOXA6 | q6 | q6 | 266 | scaffold_334 | 550373 | 552753 | -1 | 2 | 97.4% | 59.4% | 654 | 0.49 / 0.46 = 1.07 | noComparaHits: ENSXETG00000021987 | 2 |
p10 | q7 | +/+ | ENSP00000242159 | HOXA7 | q7 | q7 | 139 | scaffold_334 | 560611 | 560865 | -1 | 1 | 44.8% | 67% | 255 | 0.72 / 0.71 = 1.01 | noComparaHits: ENSXETG00000027351 | 2 |
--- | q8 | gapp | - | - | - | q8 | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q9 | +/+ | ENSP00000343619 | HOXA9 | q9 | q9 | 150 | scaffold_334 | 579373 | 579603 | -1 | 1 | 28.3% | 89.6% | 231 | 0.56 / 0.73 = 0.77 | between_species_paralog: HOXB9 | 4 |
p12 | q10 | +/+ | ENSP00000283921 | HOXA10 | q9,q10 | q10 | 121 | scaffold_334 | 584784 | 585005 | -1 | 1 | 18.8% | 73% | 222 | 0.64 / 0.83 = 0.77 | noComparaHits: HOXB9 | 6 |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 33 (region 2 for Tnig)
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l 8 -i 6599985:6636760 -f 28e3 some_geneID_to_be_selected
scoreRatio_sum=10.53 log_scoreRatio_sum=1.76 focal_scoreRatio_sum=2.76
AlnScore=3198 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Tetraodon_nigroviridis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000005587 | SKAP2 | q1 | q1 | 254.5 | 8 | 6630862 | 6636760 | 1 | 4 | 42.9% | 69.4% | 480 | 0.91 / 0.62 = 1.47 | ortholog_one2one: GSTENG00034115001 | 1 |
p2 | --- | gapq | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gapq | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q2 | +/+ | ENSP00000222718 | HOXA2 | q2 | q2 | 370 | 8 | 6626031 | 6627504 | 1 | 2 | 97.1% | 58.5% | 981 | 0.58 / 0.49 = 1.18 | ortholog_one2many: HOXAb2 | 2 |
p5 | --- | gapq | ENSP00000324884 | HOXA3 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000353151 | HOXA4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000222726 | HOXA5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000222728 | HOXA6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gapq | ENSP00000242159 | HOXA7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q3 | +/+ | ENSP00000343619 | HOXA9 | q3 | q3 | 144 | 8 | 6620992 | 6621225 | 1 | 1 | 28.7% | 84.6% | 234 | 0.56 / 0.75 = 0.75 | ortholog_one2many: HOXAb9 | 4 |
p12 | q4 | +/+ | ENSP00000283921 | HOXA10 | q4 | q4 | 307.3 | 8 | 6616572 | 6618000 | 1 | 3 | 89.6% | 48.9% | 915 | 0.64 / 0.57 = 1.12 | apparent_ortholog_one2one: HOXAb10 | 1 |
p13 | q5 | +/+ | ENSP00000006015 | HOXA11 | q5 | q5 | 319 | 8 | 6611316 | 6613075 | 1 | 2 | 100% | 55.1% | 855 | 0.46 / 0.42 = 1.1 | ortholog_one2many: GSTENG00034118001
; HOXAb11 |
2 |
p14 | q6 | +/+ | ENSP00000222753 | HOXA13 | q6 | q6 | 224.4 | 8 | 6606129 | 6607249 | 1 | 2 | 87.6% | 43.2% | 735 | 0.58 / 0.64 = 0.91 | ortholog_one2many: HOXAb13
; GSTENG00034119001 |
4 |
p15 | --- | gapq | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gapq | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | q7 | +/+ | ENSP00000265395 | HIBADH | q7 | q7 | 527.1 | 8 | 6599985 | 6603136 | 1 | 6 | 91.4% | 65.9% | 1203 | 1 / 0.25 = 4 | ortholog_one2many: GSTENG00034120001 | 1 |
region 34 (region 4 for Drer)
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 23 -i 35634466:35764976 -f 98e3 some_geneID_to_be_selected
scoreRatio_sum=8.59 log_scoreRatio_sum=-1.67 focal_scoreRatio_sum=3.32
AlnScore=3197 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000343246 | HOXA1 | q1 | q1 | 109 | 23 | 35764731 | 35764976 | 1 | 1 | 24.8% | 71.1% | 246 | 0.67 / 0.83 = 0.81 | noComparaHits: hoxc1a | 5 |
p4 | --- | gapq | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q2 | +/+ | ENSP00000324884 | HOXA3 | q2 | q2 | 109 | 23 | 35729230 | 35729442 | 1 | 1 | 16% | 74.6% | 213 | 0.51 / 0.87 = 0.59 | noComparaHits: hoxc3a | 5 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q3 | +/+ | ENSP00000353151 | HOXA4 | q3 | q3 | 158 | 23 | 35713503 | 35713763 | 1 | 1 | 27.2% | 85.1% | 261 | 0.63 / 0.76 = 0.83 | between_species_paralog: hoxc4a | 3 |
p8 | q4 | +/+ | ENSP00000222726 | HOXA5 | q4 | q4 | 179.1 | 23 | 35700226 | 35701727 | 1 | 2 | 95.2% | 42.3% | 705 | 0.42 / 0.68 = 0.62 | noComparaHits: hoxc5a | 3 |
p9 | q5 | +/+ | ENSP00000222728 | HOXA6 | q5 | q5 | 209 | 23 | 35696960 | 35698208 | 1 | 2 | 97.4% | 51.3% | 642 | 0.49 / 0.58 = 0.84 | between_species_paralog: hoxc6a | 4 |
p10 | q6 | +/+ | ENSP00000242159 | HOXA7 | q5 | q6 | 122 | 23 | 35684638 | 35684940 | 1 | 1 | 44.8% | 60.6% | 303 | 0.72 / 0.74 = 0.97 | noComparaHits: hoxc8a | 6 |
p11 | q7 | +/+ | ENSP00000343619 | HOXA9 | q7 | q7 | 255 | 23 | 35676857 | 35678677 | 1 | 2 | 98.5% | 49.6% | 765 | 0.56 / 0.55 = 1.02 | between_species_paralog: hoxc9a | 1 |
p12 | q8 | +/+ | ENSP00000283921 | HOXA10 | q8 | q8 | 216 | 23 | 35665105 | 35667851 | 1 | 2 | 99% | 39.3% | 1017 | 0.64 / 0.7 = 0.91 | noComparaHits: Q4PR86_BRARE | 3 |
p13 | q9 | +/+ | ENSP00000006015 | HOXA11 | q9 | q9 | 304 | 23 | 35656457 | 35658682 | 1 | 2 | 99.7% | 50.9% | 879 | 0.46 / 0.45 = 1.02 | between_species_paralog: hoxc11a | 3 |
p14 | q10 | +/+ | ENSP00000222753 | HOXA13 | q10 | q10 | 259 | 23 | 35634466 | 35637152 | 1 | 2 | 100% | 42.3% | 906 | 0.58 / 0.59 = 0.98 | between_species_paralog: hoxc13a | 4 |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 35 (region 3 for Hsap)
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 2 -i 176653084:176763113 -f 83e3 some_geneID_to_be_selected
scoreRatio_sum=8.36 log_scoreRatio_sum=-0.74 focal_scoreRatio_sum=3.02
AlnScore=3189 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Homo_sapiens
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000343246 | HOXA1 | q1 | q1 | 129 | 2 | 176762781 | 176763113 | 1 | 1 | 28.1% | 61.3% | 333 | 0.67 / 0.8 = 0.84 | noComparaHits: HOXD1 | 3 |
p4 | --- | gapq | ENSP00000222718 | HOXA2 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q2 | +/+ | ENSP00000324884 | HOXA3 | q2 | q2 | 409 | 2 | 176742137 | 176745245 | 1 | 2 | 100% | 50.9% | 1257 | 0.51 / 0.51 = 1 | within_species_paralog: HOXD3 | 3 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q3 | +/+ | ENSP00000353151 | HOXA4 | q3 | q3 | 240.7 | 2 | 176724608 | 176725877 | 1 | 2 | 95.6% | 47.3% | 732 | 0.63 / 0.64 = 0.98 | within_species_paralog: HOXD4 | 3 |
p8 | --- | gapq | ENSP00000222726 | HOXA5 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000222728 | HOXA6 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q4 | +/+ | ENSP00000242159 | HOXA7 | q3,q4 | q4 | 117 | 2 | 176704287 | 176704571 | 1 | 1 | 40.4% | 61.1% | 285 | 0.72 / 0.75 = 0.96 | noComparaHits: HOXD8 | 9 |
p11 | q5 | +/+ | ENSP00000343619 | HOXA9 | q5 | q5 | 232.9 | 2 | 176695773 | 176697131 | 1 | 2 | 78.7% | 53.9% | 696 | 0.56 / 0.59 = 0.95 | within_species_paralog: HOXD9 | 3 |
p12 | q6 | +/+ | ENSP00000283921 | HOXA10 | q6 | q6 | 261 | 2 | 176689820 | 176692202 | 1 | 2 | 73% | 52.6% | 723 | 0.64 / 0.64 = 1 | noComparaHits: HOXD10 | 2 |
p13 | q7 | +/+ | ENSP00000006015 | HOXA11 | q7 | q7 | 148 | 2 | 176681733 | 176682110 | 1 | 1 | 46% | 57.8% | 378 | 0.46 / 0.73 = 0.63 | within_species_paralog: HOXD11 | 3 |
p14 | q8 | +/+ | ENSP00000222753 | HOXA13 | q8 | q8 | 263 | 2 | 176665904 | 176667695 | 1 | 2 | 86.3% | 47.4% | 981 | 0.58 / 0.58 = 1 | within_species_paralog: HOXD13 | 2 |
p15 | q9 | +/+ | ENSP00000222761 | EVX1 | q9 | q9 | 312 | 2 | 176653084 | 176655433 | -1 | 2 | 68.1% | 52.2% | 1017 | 0.51 / 0.51 = 1 | within_species_paralog: EVX2 | 2 |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 36 (region 2 for Olat)
retrieve target region: getEnsemblProteins.pl -h Oryzias_latipes -l 16 -i 13097874:13146257 -f 36e3 some_geneID_to_be_selected
scoreRatio_sum=10.27 log_scoreRatio_sum=1.7 focal_scoreRatio_sum=2.86
AlnScore=3184 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Oryzias_latipes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000005587 | SKAP2 | q1 | q1 | 184.6 | 16 | 13144293 | 13146257 | 1 | 2 | 32% | 58.4% | 447 | 0.91 / 0.72 = 1.26 | ortholog_one2one: ENSORLG00000007660 | 2 |
p2 | --- | gapq | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gapq | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q2 | +/+ | ENSP00000222718 | HOXA2 | q2 | q2 | 280.4 | 16 | 13135966 | 13137443 | 1 | 2 | 96% | 47.5% | 969 | 0.58 / 0.61 = 0.95 | ortholog_one2many: Q3V627_ORYLA | 2 |
p5 | --- | gapq | ENSP00000324884 | HOXA3 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000353151 | HOXA4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000222726 | HOXA5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000222728 | HOXA6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gapq | ENSP00000242159 | HOXA7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q3 | +/+ | ENSP00000343619 | HOXA9 | q3 | q3 | 221.6 | 16 | 13130864 | 13131804 | 1 | 2 | 96.7% | 47.5% | 720 | 0.56 / 0.61 = 0.92 | ortholog_one2one: Q3V626_ORYLA | 4 |
p12 | q4 | +/+ | ENSP00000283921 | HOXA10 | q4 | q4 | 267 | 16 | 13127640 | 13129140 | 1 | 2 | 100% | 44.1% | 1053 | 0.64 / 0.63 = 1.02 | apparent_ortholog_one2one: Q3V625_ORYLA | 2 |
p13 | q5 | +/+ | ENSP00000006015 | HOXA11 | q5 | q5 | 292 | 16 | 13120137 | 13121652 | 1 | 2 | 94.2% | 54.9% | 834 | 0.46 / 0.47 = 0.98 | ortholog_one2many: Q3V624_ORYLA | 3 |
p14 | q6 | +/+ | ENSP00000222753 | HOXA13 | q6 | q6 | 347 | 16 | 13115192 | 13116159 | 1 | 2 | 99.2% | 53.2% | 867 | 0.58 / 0.45 = 1.29 | ortholog_one2many: Q3V623_ORYLA | 2 |
p15 | --- | gapq | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gapq | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | q7 | +/+ | ENSP00000265395 | HIBADH | q7 | q7 | 519 | 16 | 13097874 | 13108832 | 1 | 6 | 90.8% | 72.8% | 1026 | 1 / 0.26 = 3.85 | ortholog_one2many: ENSORLG00000007586 | 1 |
region 37 (region 3 for Tnig)
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l Un_random -i 38028392:38193152 -f 12e4 some_geneID_to_be_selected
scoreRatio_sum=7.84 log_scoreRatio_sum=-1.38 focal_scoreRatio_sum=2.15
AlnScore=3129 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Tetraodon_nigroviridis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000343246 | HOXA1 | q1 | q1 | 175.3 | Un_random | 38028392 | 38030487 | -1 | 2 | 79.7% | 37.8% | 927 | 0.67 / 0.73 = 0.92 | noComparaHits: GSTENG00005035001
; HOXB1 |
3 |
p4 | q2 | +/+ | ENSP00000222718 | HOXA2 | q2 | q2 | 303 | Un_random | 38041354 | 38043918 | -1 | 2 | 100% | 44.2% | 1242 | 0.58 / 0.58 = 1 | between_species_paralog: HOXBa2
; GSTENG00020451001 |
3 |
p5 | q3 | +/+ | ENSP00000324884 | HOXA3 | q3 | q3 | 379.5 | Un_random | 38049854 | 38053272 | -1 | 3 | 100% | 48.4% | 1437 | 0.51 / 0.55 = 0.93 | between_species_paralog: GSTENG00020452001
; HOXB3 |
2 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q4 | +/+ | ENSP00000353151 | HOXA4 | q4 | q4 | 159 | Un_random | 38082978 | 38083274 | -1 | 1 | 30.9% | 75.8% | 297 | 0.63 / 0.76 = 0.83 | between_species_paralog: HOXB4 | 4 |
p8 | q5 | +/+ | ENSP00000222726 | HOXA5 | q5 | q5 | 262 | Un_random | 38101271 | 38103594 | -1 | 2 | 100% | 48.5% | 993 | 0.42 / 0.53 = 0.79 | between_species_paralog: HOXB5
; GSTENG00020455001 |
3 |
p9 | q6 | +/+ | ENSP00000222728 | HOXA6 | q6 | q6 | 147.1 | Un_random | 38107367 | 38109897 | -1 | 2 | 47.2% | 64.8% | 381 | 0.49 / 0.7 = 0.7 | noComparaHits: GSTENG00020456001 | 3 |
p10 | --- | gapq | ENSP00000242159 | HOXA7 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q7 | +/+ | ENSP00000343619 | HOXA9 | q7 | q7 | 142 | Un_random | 38140058 | 38140288 | -1 | 1 | 28.3% | 85.7% | 231 | 0.56 / 0.75 = 0.75 | noComparaHits: GSTENG00020456001 | 5 |
p12 | --- | gapq | ENSP00000283921 | HOXA10 | q7 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gapq | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q8 | +/+ | ENSP00000222753 | HOXA13 | q8 | q8 | 334 | Un_random | 38176501 | 38178237 | -1 | 2 | 100% | 49% | 999 | 0.58 / 0.47 = 1.23 | between_species_paralog: GSTENG00020457001
; HOXB13 |
2 |
p15 | q9 | +/+ | ENSP00000222761 | EVX1 | q9 | q9 | 165.2 | Un_random | 38191031 | 38193152 | 1 | 2 | 45% | 50.3% | 552 | 0.51 / 0.74 = 0.69 | noComparaHits: GSTENG00020458001
; HOXB-EVX |
3 |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 38 (region 3 for Olat)
retrieve target region: getEnsemblProteins.pl -h Oryzias_latipes -l 8 -i 24254371:24441965 -f 14e4 some_geneID_to_be_selected
scoreRatio_sum=7.72 log_scoreRatio_sum=-1.46 focal_scoreRatio_sum=2.16
AlnScore=3120 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Oryzias_latipes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000343246 | HOXA1 | q1 | q1 | 186 | 8 | 24439946 | 24441965 | 1 | 2 | 96.1% | 35.1% | 1176 | 0.67 / 0.72 = 0.93 | noComparaHits: Q2WFU0_ORYLA | 3 |
p4 | q2 | +/+ | ENSP00000222718 | HOXA2 | q2 | q2 | 261 | 8 | 24421469 | 24423645 | 1 | 2 | 99.2% | 41.8% | 1224 | 0.58 / 0.64 = 0.91 | between_species_paralog: Q3V621_ORYLA | 3 |
p5 | q3 | +/+ | ENSP00000324884 | HOXA3 | q3 | q3 | 284 | 8 | 24414376 | 24415236 | 1 | 1 | 61.4% | 56.7% | 861 | 0.51 / 0.66 = 0.77 | between_species_paralog: Q3V620_ORYLA | 3 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q4 | +/+ | ENSP00000353151 | HOXA4 | q4 | q4 | 223.7 | 8 | 24381089 | 24382972 | 1 | 2 | 90% | 46% | 708 | 0.63 / 0.67 = 0.94 | between_species_paralog: Q3V619_ORYLA | 2 |
p8 | q5 | +/+ | ENSP00000222726 | HOXA5 | q5 | q5 | 237.6 | 8 | 24366650 | 24368530 | 1 | 2 | 93.7% | 47.2% | 915 | 0.42 / 0.57 = 0.74 | between_species_paralog: Q9PVS0_ORYLA | 3 |
p9 | q6 | +/+ | ENSP00000222728 | HOXA6 | q6 | q6 | 210.3 | 8 | 24361076 | 24363028 | 1 | 2 | 98.7% | 47.1% | 792 | 0.49 / 0.57 = 0.86 | between_species_paralog: Q3V617_ORYLA | 3 |
p10 | --- | gapq | ENSP00000242159 | HOXA7 | q6 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q7 | +/+ | ENSP00000343619 | HOXA9 | q7 | q7 | 143 | 8 | 24318538 | 24318771 | 1 | 1 | 28.7% | 84.6% | 234 | 0.56 / 0.75 = 0.75 | between_species_paralog: Q3V615_ORYLA | 5 |
p12 | --- | gapq | ENSP00000283921 | HOXA10 | q7 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gapq | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q8 | +/+ | ENSP00000222753 | HOXA13 | q8 | q8 | 305 | 8 | 24280190 | 24281758 | 1 | 2 | 100% | 47.7% | 1014 | 0.58 / 0.52 = 1.12 | between_species_paralog: Q3V614_ORYLA | 3 |
p15 | q9 | +/+ | ENSP00000222761 | EVX1 | q9 | q9 | 171 | 8 | 24254371 | 24257371 | -1 | 2 | 54.8% | 43% | 624 | 0.51 / 0.73 = 0.7 | noComparaHits: Q2WFT1_ORYLA | 3 |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 39 (region 3 for Btau)
retrieve target region: getEnsemblProteins.pl -h Bos_taurus -l 19 -i 30587651:31423504 -f 63e4 some_geneID_to_be_selected
scoreRatio_sum=8.3 log_scoreRatio_sum=-1.05 focal_scoreRatio_sum=2.68
AlnScore=3087 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Bos_taurus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000343246 | HOXA1 | q1 | q1 | 219.3 | 19 | 30587804 | 30589166 | -1 | 2 | 98.5% | 44.4% | 927 | 0.67 / 0.67 = 1 | noComparaHits: HOXB1 | 2 |
p4 | q2 | +/+ | ENSP00000222718 | HOXA2 | q2 | q2 | 290 | 19 | 30598852 | 30600675 | -1 | 2 | 96% | 49.7% | 1035 | 0.58 / 0.6 = 0.97 | between_species_paralog: HOXB2 | 2 |
p5 | q3 | +/+ | ENSP00000324884 | HOXA3 | q3 | q3 | 388 | 19 | 30606318 | 30608457 | -1 | 2 | 80.6% | 57.1% | 1023 | 0.51 / 0.54 = 0.94 | between_species_paralog: HOXB3 | 3 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q4 | +/+ | ENSP00000353151 | HOXA4 | q4 | q4 | 172 | 19 | 31195622 | 31195927 | -1 | 1 | 31.9% | 77.5% | 306 | 0.63 / 0.74 = 0.85 | noComparaHits: HOXB5 | 4 |
p8 | q5 | +/+ | ENSP00000222726 | HOXA5 | q5 | q5 | 167 | 19 | 31211886 | 31212452 | -1 | 1 | 70% | 48.2% | 567 | 0.42 / 0.7 = 0.6 | between_species_paralog: HOXB5 | 3 |
p9 | q6 | +/+ | ENSP00000222728 | HOXA6 | q7 | q6 | 106 | 19 | 31215462 | 31215872 | -1 | 1 | 62.7% | 44.6% | 411 | 0.49 / 0.78 = 0.63 | noComparaHits: HOXB5 | 10 |
p10 | q7 | +/+ | ENSP00000242159 | HOXA7 | q7 | q7 | 254 | 19 | 31225449 | 31227812 | -1 | 2 | 86.1% | 57% | 738 | 0.72 / 0.47 = 1.53 | between_species_paralog: HXB7_BOVIN | 2 |
--- | q8 | gapp | - | - | - | q8 | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q9 | +/+ | ENSP00000343619 | HOXA9 | q9 | q9 | 147 | 19 | 31239435 | 31239665 | -1 | 1 | 28.3% | 87% | 231 | 0.56 / 0.74 = 0.76 | between_species_paralog: HOXB9 | 4 |
p12 | --- | gapq | ENSP00000283921 | HOXA10 | q9 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gapq | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q10 | /+ | ENSP00000222753 | HOXA13 | q10 | q10 | 274.8 | 19 | 31421907 | 31423471 | 1 | 3 | 57.7% | 60.3% | 642 | 0.58 / 0.57 = 1.02 | between_species_paralog: HOXB13 | 1 |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 40 (region 6 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l groupXII -i 11575429:11674083 -f 74e3 some_geneID_to_be_selected
scoreRatio_sum=7.83 log_scoreRatio_sum=-1.38 focal_scoreRatio_sum=3.16
AlnScore=2878 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000343246 | HOXA1 | q1 | q1 | 110 | groupXII | 11673811 | 11674083 | 1 | 1 | 29.9% | 60% | 273 | 0.67 / 0.83 = 0.81 | ortholog_one2many: ENSGACG00000009431 | 4 |
p4 | --- | gapq | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gapq | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q2 | +/+ | ENSP00000353151 | HOXA4 | q2 | q2 | 158 | groupXII | 11648351 | 11648605 | 1 | 1 | 26.6% | 85.9% | 255 | 0.63 / 0.76 = 0.83 | between_species_paralog: ENSGACG00000009421 | 3 |
p8 | q3 | +/+ | ENSP00000222726 | HOXA5 | q3 | q3 | 125 | groupXII | 11638322 | 11638513 | 1 | 1 | 23.7% | 87.5% | 192 | 0.42 / 0.77 = 0.55 | noComparaHits: ENSGACG00000009416 | 5 |
p9 | q4 | +/+ | ENSP00000222728 | HOXA6 | q4 | q4 | 218.6 | groupXII | 11633747 | 11634862 | 1 | 2 | 100% | 53.6% | 666 | 0.49 / 0.56 = 0.87 | ortholog_one2many: Q4VQD3_GASAC | 1 |
p10 | q5 | +/+ | ENSP00000242159 | HOXA7 | q4 | q5 | 112 | groupXII | 11623810 | 11624013 | 1 | 1 | 29.1% | 77.9% | 204 | 0.72 / 0.76 = 0.95 | noComparaHits: ENSGACG00000009401 | noData |
p11 | q6 | +/+ | ENSP00000343619 | HOXA9 | q6 | q6 | 257 | groupXII | 11616265 | 11618032 | 1 | 2 | 98.5% | 50.9% | 771 | 0.56 / 0.55 = 1.02 | between_species_paralog: ENSGACG00000009396 | 1 |
p12 | q7 | +/+ | ENSP00000283921 | HOXA10 | q7 | q7 | 145 | groupXII | 11608799 | 11609065 | 1 | 1 | 22.6% | 77.5% | 267 | 0.64 / 0.8 = 0.8 | noComparaHits: ENSGACG00000009394 | 4 |
p13 | q8 | +/+ | ENSP00000006015 | HOXA11 | q8 | q8 | 303 | groupXII | 11597279 | 11599472 | 1 | 2 | 99.7% | 50.9% | 927 | 0.46 / 0.45 = 1.02 | between_species_paralog: ENSGACG00000009392 | 3 |
p14 | q9 | +/+ | ENSP00000222753 | HOXA13 | q9 | q9 | 262 | groupXII | 11575429 | 11578150 | 1 | 2 | 99.5% | 43% | 900 | 0.58 / 0.59 = 0.98 | between_species_paralog: ENSGACG00000009389 | 5 |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 41 (region 5 for Drer)
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 9 -i 1312491:1621062 -f 23e4 some_geneID_to_be_selected
scoreRatio_sum=6.89 log_scoreRatio_sum=-0.13 focal_scoreRatio_sum=2.9
AlnScore=2841 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q1 | +/+ | ENSP00000324884 | HOXA3 | q1 | q1 | 397.7 | 9 | 1553343 | 1554744 | -1 | 2 | 100% | 49.7% | 1188 | 0.51 / 0.52 = 0.98 | noComparaHits: ENSDARG00000059280
; hoxd3a |
3 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000353151 | HOXA4 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000222726 | HOXA5 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000222728 | HOXA6 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q2 | +/+ | ENSP00000242159 | HOXA7 | q2 | q2 | 119 | 9 | 1565361 | 1565555 | -1 | 1 | 28.3% | 83.1% | 195 | 0.72 / 0.75 = 0.96 | noComparaHits: hoxd4a | 7 |
p11 | q3 | +/+ | ENSP00000343619 | HOXA9 | q3 | q3 | 251 | 9 | 1580192 | 1581290 | -1 | 2 | 100% | 48.7% | 783 | 0.56 / 0.56 = 1 | between_species_paralog: hoxd9a | 2 |
p12 | q4 | +/+ | ENSP00000283921 | HOXA10 | q4 | q4 | 262 | 9 | 1583877 | 1585575 | -1 | 2 | 73% | 52.6% | 717 | 0.64 / 0.63 = 1.02 | noComparaHits: hoxd10a | 2 |
p13 | q5 | +/+ | ENSP00000006015 | HOXA11 | q5 | q5 | 306 | 9 | 1591960 | 1593641 | -1 | 2 | 91.1% | 55.8% | 825 | 0.46 / 0.44 = 1.05 | between_species_paralog: hoxd11a | 2 |
p14 | q6 | +/+ | ENSP00000222753 | HOXA13 | q6 | q6 | 169 | 9 | 1603330 | 1605654 | -1 | 2 | 46.9% | 52.7% | 522 | 0.58 / 0.73 = 0.79 | noComparaHits: hoxd13a | 6 |
p15 | q7 | +/+ | ENSP00000222761 | EVX1 | q7 | q7 | 333 | 9 | 1619667 | 1621062 | 1 | 2 | 62.9% | 62.5% | 843 | 0.51 / 0.47 = 1.09 | between_species_paralog: evx2 | 2 |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 42 (region 3 for Mmul)
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 12 -i 39720761:39831755 -f 83e3 some_geneID_to_be_selected
scoreRatio_sum=7.39 log_scoreRatio_sum=-0.66 focal_scoreRatio_sum=2.06
AlnScore=2809 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Macaca_mulatta
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000343246 | HOXA1 | q1 | q1 | 130 | 12 | 39831423 | 39831755 | 1 | 1 | 28.1% | 61.3% | 333 | 0.67 / 0.8 = 0.84 | noComparaHits: HOXD1 | 3 |
p4 | --- | gapq | ENSP00000222718 | HOXA2 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q2 | +/+ | ENSP00000324884 | HOXA3 | q2 | q2 | 411 | 12 | 39810806 | 39813914 | 1 | 2 | 100% | 51.8% | 1257 | 0.51 / 0.51 = 1 | between_species_paralog: HOXD3 | 2 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q3 | +/+ | ENSP00000353151 | HOXA4 | q3 | q3 | 229.7 | 12 | 39793366 | 39794635 | 1 | 2 | 95.6% | 45% | 732 | 0.63 / 0.66 = 0.95 | ortholog_one2many: HOXD4 | 1 |
p8 | --- | gapq | ENSP00000222726 | HOXA5 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000222728 | HOXA6 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q4 | +/+ | ENSP00000242159 | HOXA7 | q4 | q4 | 117 | 12 | 39772647 | 39772931 | 1 | 1 | 40.4% | 61.1% | 285 | 0.72 / 0.75 = 0.96 | noComparaHits: HOXD8 | 10 |
p11 | --- | gapq | ENSP00000343619 | HOXA9 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q5 | +/+ | ENSP00000283921 | HOXA10 | q5 | q5 | 230.9 | 12 | 39758107 | 39760422 | 1 | 2 | 60.6% | 54.4% | 597 | 0.64 / 0.68 = 0.94 | noComparaHits: HOXD10 | 2 |
p13 | q6 | +/+ | ENSP00000006015 | HOXA11 | q6 | q6 | 202 | 12 | 39748746 | 39750374 | 1 | 2 | 38% | 79.8% | 354 | 0.46 / 0.63 = 0.73 | noComparaHits: | 3 |
p14 | q7 | +/+ | ENSP00000222753 | HOXA13 | q7 | q7 | 249 | 12 | 39733978 | 39735556 | 1 | 2 | 66.2% | 53.9% | 768 | 0.58 / 0.61 = 0.95 | between_species_paralog: HOXD13 | 3 |
p15 | q8 | +/+ | ENSP00000222761 | EVX1 | q8 | q8 | 315 | 12 | 39720761 | 39723107 | -1 | 2 | 68.1% | 53.2% | 1014 | 0.51 / 0.5 = 1.02 | between_species_paralog: EVX2 | 2 |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 43 (region 4 for Btau)
retrieve target region: getEnsemblProteins.pl -h Bos_taurus -l 2 -i 16934870:17086035 -f 11e4 some_geneID_to_be_selected
scoreRatio_sum=7.47 log_scoreRatio_sum=-0.57 focal_scoreRatio_sum=2.76
AlnScore=2771 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Bos_taurus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000343246 | HOXA1 | q1 | q1 | 137 | 2 | 16934921 | 16935271 | -1 | 1 | 34.9% | 62.4% | 351 | 0.67 / 0.79 = 0.85 | noComparaHits: HOXD1 | 3 |
p4 | --- | gapq | ENSP00000222718 | HOXA2 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q2 | +/+ | ENSP00000324884 | HOXA3 | q2 | q2 | 419 | 2 | 16951347 | 16954640 | -1 | 2 | 100% | 51.5% | 1311 | 0.51 / 0.5 = 1.02 | between_species_paralog: HOXD3 | 2 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q3 | +/+ | ENSP00000353151 | HOXA4 | q3 | q3 | 224 | 2 | 16969554 | 16970762 | -1 | 2 | 87.5% | 46.8% | 717 | 0.63 / 0.67 = 0.94 | between_species_paralog: HOXD4 | 2 |
p8 | --- | gapq | ENSP00000222726 | HOXA5 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000222728 | HOXA6 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q4 | +/+ | ENSP00000242159 | HOXA7 | q4 | q4 | 118 | 2 | 16991120 | 16991404 | -1 | 1 | 40.4% | 62.1% | 285 | 0.72 / 0.75 = 0.96 | noComparaHits: HOXD8 | 7 |
p11 | q5 | +/+ | ENSP00000343619 | HOXA9 | q5 | q5 | 236 | 2 | 16998559 | 16999927 | -1 | 2 | 70.6% | 61.7% | 570 | 0.56 / 0.59 = 0.95 | between_species_paralog: HOXD9 | 3 |
p12 | q6 | +/+ | ENSP00000283921 | HOXA10 | q6 | q6 | 261 | 2 | 17003673 | 17006036 | -1 | 2 | 97.5% | 44.8% | 984 | 0.64 / 0.64 = 1 | noComparaHits: HOXD10 | 2 |
p13 | --- | gapq | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q7 | +/+ | ENSP00000222753 | HOXA13 | q7 | q7 | 261 | 2 | 17072588 | 17074316 | -1 | 2 | 81.2% | 46.7% | 939 | 0.58 / 0.59 = 0.98 | between_species_paralog: HOXD13 | 2 |
p15 | q8 | +/+ | ENSP00000222761 | EVX1 | q8 | q8 | 214.4 | 2 | 17084392 | 17086035 | 1 | 2 | 28% | 85.3% | 348 | 0.51 / 0.66 = 0.77 | between_species_paralog: EVX2 | 2 |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 44 (region 4 for Mmus)
retrieve target region: getEnsemblProteins.pl -h Mus_musculus -l 15 -i 102749222:102864071 -f 86e3 some_geneID_to_be_selected
scoreRatio_sum=6.99 log_scoreRatio_sum=-1.15 focal_scoreRatio_sum=3.08
AlnScore=2746 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Mus_musculus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q1 | +/+ | ENSP00000353151 | HOXA4 | q1 | q1 | 167 | 15 | 102863664 | 102863987 | 1 | 1 | 32.2% | 75% | 324 | 0.63 / 0.75 = 0.84 | between_species_paralog: Hoxc4 | 4 |
p8 | q2 | +/+ | ENSP00000222726 | HOXA5 | q2 | q2 | 194.9 | 15 | 102842116 | 102843461 | 1 | 2 | 95.6% | 43.3% | 696 | 0.42 / 0.65 = 0.65 | noComparaHits: Hoxc5
; mmu-mir-615 |
3 |
p9 | q3 | +/+ | ENSP00000222728 | HOXA6 | q3 | q3 | 215.3 | 15 | 102837640 | 102839012 | 1 | 2 | 98.3% | 48.5% | 663 | 0.49 / 0.56 = 0.87 | between_species_paralog: Hoxc6 | 3 |
p10 | q4 | +/+ | ENSP00000242159 | HOXA7 | q3 | q4 | 113 | 15 | 102820593 | 102820808 | 1 | 1 | 30.9% | 76.4% | 216 | 0.72 / 0.76 = 0.95 | noComparaHits: Hoxc8 | noData |
p11 | q5 | +/+ | ENSP00000343619 | HOXA9 | q5 | q5 | 250.6 | 15 | 102809687 | 102812164 | 1 | 2 | 100% | 48.8% | 810 | 0.56 / 0.56 = 1 | between_species_paralog: Hoxc9 | 2 |
p12 | q6 | +/+ | ENSP00000283921 | HOXA10 | q6 | q6 | 232.6 | 15 | 102794940 | 102799106 | 1 | 2 | 92.1% | 42.1% | 1002 | 0.64 / 0.68 = 0.94 | noComparaHits: Hoxc10 | 3 |
p13 | q7 | +/+ | ENSP00000006015 | HOXA11 | q7 | q7 | 294 | 15 | 102782620 | 102784732 | 1 | 2 | 99.7% | 49.8% | 894 | 0.46 / 0.46 = 1 | between_species_paralog: HXC11_MOUSE | 3 |
p14 | q8 | +/+ | ENSP00000222753 | HOXA13 | q9 | q8 | 137 | 15 | 102755145 | 102755435 | 1 | 1 | 24.2% | 74.2% | 291 | 0.58 / 0.78 = 0.74 | between_species_paralog: Hoxc13 | 4 |
p15 | --- | gapq | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gapq | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gapq | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
--- | q9 | gape | - | - | - | q9 | - | - | - | - | - | - | - | - | - | - | - | - |
region 45 (region 4 for Hsap)
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 12 -i 52618958:52735229 -f 87e3 some_geneID_to_be_selected
scoreRatio_sum=6.99 log_scoreRatio_sum=-1.15 focal_scoreRatio_sum=3.08
AlnScore=2743 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Homo_sapiens
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q1 | +/+ | ENSP00000353151 | HOXA4 | q1 | q1 | 166 | 12 | 52734900 | 52735217 | 1 | 1 | 31.6% | 75.5% | 318 | 0.63 / 0.75 = 0.84 | within_species_paralog: HOXC4 | 4 |
p8 | q2 | +/+ | ENSP00000222726 | HOXA5 | q2 | q2 | 196.6 | 12 | 52713174 | 52714528 | 1 | 2 | 94.4% | 45.4% | 657 | 0.42 / 0.65 = 0.65 | noComparaHits: HOXC5
; hsa-mir-615 |
3 |
p9 | q3 | +/+ | ENSP00000222728 | HOXA6 | q3 | q3 | 215.3 | 12 | 52708573 | 52709950 | 1 | 2 | 98.3% | 48.5% | 663 | 0.49 / 0.56 = 0.87 | within_species_paralog: HOXC6 | 3 |
p10 | q4 | +/+ | ENSP00000242159 | HOXA7 | q3 | q4 | 112 | 12 | 52691142 | 52691351 | 1 | 1 | 30% | 77.1% | 210 | 0.72 / 0.76 = 0.95 | noComparaHits: HOXC8 | noData |
p11 | q5 | +/+ | ENSP00000343619 | HOXA9 | q5 | q5 | 250 | 12 | 52680240 | 52682716 | 1 | 2 | 100% | 48.6% | 819 | 0.56 / 0.56 = 1 | within_species_paralog: HOXC9 | 2 |
p12 | q6 | +/+ | ENSP00000283921 | HOXA10 | q6 | q6 | 230.6 | 12 | 52665359 | 52669494 | 1 | 2 | 92.1% | 41.6% | 1002 | 0.64 / 0.68 = 0.94 | noComparaHits: HOXC10 | 3 |
p13 | q7 | +/+ | ENSP00000006015 | HOXA11 | q7 | q7 | 295 | 12 | 52653353 | 52655461 | 1 | 2 | 92.3% | 53.7% | 861 | 0.46 / 0.46 = 1 | within_species_paralog: HOXC11 | 2 |
--- | q8 | gapp | - | - | - | q8 | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q9 | +/+ | ENSP00000222753 | HOXA13 | q9 | q9 | 139 | 12 | 52618958 | 52619692 | 1 | 1 | 79.1% | 35.8% | 735 | 0.58 / 0.78 = 0.74 | within_species_paralog: HOXC13 | 4 |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 46 (region 4 for Tnig)
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l 9 -i 4183940:4253153 -f 52e3 some_geneID_to_be_selected
scoreRatio_sum=7.06 log_scoreRatio_sum=-1.12 focal_scoreRatio_sum=3.06
AlnScore=2738 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Tetraodon_nigroviridis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q1 | +/+ | ENSP00000353151 | HOXA4 | q1 | q1 | 217.8 | 9 | 4251930 | 4253123 | 1 | 2 | 90.3% | 44.5% | 687 | 0.63 / 0.68 = 0.93 | between_species_paralog: GSTENG00028038001
; HOXC4 |
2 |
p8 | q2 | +/+ | ENSP00000222726 | HOXA5 | q2 | q2 | 124 | 9 | 4243976 | 4244167 | 1 | 1 | 23.7% | 87.5% | 192 | 0.42 / 0.77 = 0.55 | noComparaHits: HOXC5
; GSTENG00028038001 |
5 |
p9 | q3 | +/+ | ENSP00000222728 | HOXA6 | q3 | q3 | 198.2 | 9 | 4239775 | 4240757 | 1 | 2 | 83.7% | 51.6% | 609 | 0.49 / 0.6 = 0.82 | between_species_paralog: HOXC6 | 2 |
p10 | q4 | +/+ | ENSP00000242159 | HOXA7 | q3 | q4 | 112 | 9 | 4229737 | 4229940 | 1 | 1 | 29.1% | 77.9% | 204 | 0.72 / 0.76 = 0.95 | noComparaHits: HOXC8
; GSTENG00028039001 |
6 |
p11 | q5 | +/+ | ENSP00000343619 | HOXA9 | q5 | q5 | 248 | 9 | 4222544 | 4224247 | 1 | 2 | 98.5% | 48.8% | 804 | 0.56 / 0.56 = 1 | between_species_paralog: HOXC9
; GSTENG00028039001 |
2 |
p12 | q6 | +/+ | ENSP00000283921 | HOXA10 | q6 | q6 | 146 | 9 | 4215902 | 4216234 | 1 | 1 | 30.5% | 63.3% | 333 | 0.64 / 0.79 = 0.81 | ortholog_one2many: GSTENG00028041001
; HOXC10 |
4 |
p13 | q7 | +/+ | ENSP00000006015 | HOXA11 | q7 | q7 | 299 | 9 | 4205469 | 4207568 | 1 | 2 | 99.7% | 50.9% | 906 | 0.46 / 0.45 = 1.02 | between_species_paralog: GSTENG00028041001
; HOXC11 |
3 |
p14 | q8 | +/+ | ENSP00000222753 | HOXA13 | q8 | q8 | 258 | 9 | 4183940 | 4186692 | 1 | 2 | 99.7% | 41.6% | 903 | 0.58 / 0.59 = 0.98 | between_species_paralog: HOXC13
; GSTENG00028043001 |
3 |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 47 (region 4 for Olat)
retrieve target region: getEnsemblProteins.pl -h Oryzias_latipes -l 7 -i 12836622:12915770 -f 59e3 some_geneID_to_be_selected
scoreRatio_sum=7.05 log_scoreRatio_sum=-1.14 focal_scoreRatio_sum=3.1
AlnScore=2725 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Oryzias_latipes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q1 | +/+ | ENSP00000353151 | HOXA4 | q1 | q1 | 157 | 7 | 12905699 | 12905968 | 1 | 1 | 28.1% | 82.2% | 270 | 0.63 / 0.77 = 0.82 | between_species_paralog: HXC4_ORYLA | 3 |
p8 | q2 | +/+ | ENSP00000222726 | HOXA5 | q2 | q2 | 127 | 7 | 12895793 | 12896014 | 1 | 1 | 27.4% | 81.1% | 222 | 0.42 / 0.77 = 0.55 | noComparaHits: Q3V607_ORYLA
; Q3V609_ORYLA |
4 |
p9 | q3 | +/+ | ENSP00000222728 | HOXA6 | q3 | q3 | 216.9 | 7 | 12891828 | 12892882 | 1 | 2 | 100% | 51.3% | 669 | 0.49 / 0.56 = 0.87 | noComparaHits: HXC9_ORYLA
; Q3V609_ORYLA |
2 |
p10 | q4 | +/+ | ENSP00000242159 | HOXA7 | q3 | q4 | 112 | 7 | 12882355 | 12882558 | 1 | 1 | 29.1% | 77.9% | 204 | 0.72 / 0.76 = 0.95 | noComparaHits: HXC9_ORYLA
; Q3V609_ORYLA |
noData |
p11 | q5 | +/+ | ENSP00000343619 | HOXA9 | q5 | q5 | 262 | 7 | 12875582 | 12877188 | 1 | 2 | 100% | 51.1% | 789 | 0.56 / 0.54 = 1.04 | between_species_paralog: HXC9_ORYLA | 2 |
p12 | q6 | +/+ | ENSP00000283921 | HOXA10 | q6 | q6 | 145 | 7 | 12868244 | 12868489 | 1 | 1 | 20.9% | 84.1% | 246 | 0.64 / 0.8 = 0.8 | noComparaHits: Q3V603_ORYLA | 4 |
p13 | q7 | +/+ | ENSP00000006015 | HOXA11 | q7 | q7 | 308 | 7 | 12857107 | 12859665 | 1 | 2 | 94.9% | 52.6% | 891 | 0.46 / 0.44 = 1.05 | between_species_paralog: Q90ZG3_ORYLA | 2 |
p14 | q8 | +/+ | ENSP00000222753 | HOXA13 | q8 | q8 | 255 | 7 | 12836622 | 12839091 | 1 | 2 | 99.7% | 42.3% | 903 | 0.58 / 0.6 = 0.97 | between_species_paralog: Q3V600_ORYLA | 4 |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 48 (region 4 for Trub)
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_66 -i 126593:194602 -f 51e3 some_geneID_to_be_selected
scoreRatio_sum=6.99 log_scoreRatio_sum=-1.2 focal_scoreRatio_sum=3.08
AlnScore=2687 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Takifugu_rubripes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q1 | +/+ | ENSP00000353151 | HOXA4 | q1 | q1 | 153 | scaffold_66 | 126662 | 126916 | -1 | 1 | 26.6% | 83.5% | 255 | 0.63 / 0.77 = 0.82 | between_species_paralog: NEWSINFRUG00000146324 | 4 |
p8 | q2 | +/+ | ENSP00000222726 | HOXA5 | q2 | q2 | 125 | scaffold_66 | 135780 | 135971 | -1 | 1 | 23.7% | 89.1% | 192 | 0.42 / 0.77 = 0.55 | noComparaHits: NEWSINFRUG00000146325 | 5 |
p9 | q3 | +/+ | ENSP00000222728 | HOXA6 | q3 | q3 | 213.3 | scaffold_66 | 139118 | 140214 | -1 | 2 | 99.6% | 50.8% | 681 | 0.49 / 0.57 = 0.86 | between_species_paralog: O42504_FUGRU | 3 |
p10 | q4 | +/+ | ENSP00000242159 | HOXA7 | q3 | q4 | 112 | scaffold_66 | 149232 | 149435 | -1 | 1 | 29.1% | 77.9% | 204 | 0.72 / 0.76 = 0.95 | noComparaHits: O42503_FUGRU | 7 |
p11 | q5 | +/+ | ENSP00000343619 | HOXA9 | q5 | q5 | 260 | scaffold_66 | 154997 | 156667 | -1 | 2 | 98.5% | 50.2% | 798 | 0.56 / 0.54 = 1.04 | between_species_paralog: HXC9_FUGRU | 2 |
p12 | q6 | +/+ | ENSP00000283921 | HOXA10 | q6 | q6 | 145 | scaffold_66 | 162817 | 163080 | -1 | 1 | 22.4% | 78.4% | 264 | 0.64 / 0.8 = 0.8 | noComparaHits: NEWSINFRUG00000146333 | 4 |
p13 | q7 | +/+ | ENSP00000006015 | HOXA11 | q7 | q7 | 296 | scaffold_66 | 171697 | 173832 | -1 | 2 | 99.7% | 51.4% | 930 | 0.46 / 0.46 = 1 | between_species_paralog: NEWSINFRUG00000149367 | 3 |
p14 | q8 | +/+ | ENSP00000222753 | HOXA13 | q8 | q8 | 256 | scaffold_66 | 191852 | 194602 | -1 | 2 | 99.7% | 41.5% | 903 | 0.58 / 0.6 = 0.97 | between_species_paralog: NEWSINFRUG00000149366 | 6 |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 49 (region 3 for Cfam)
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 36 -i 22914522:23023340 -f 82e3 some_geneID_to_be_selected
scoreRatio_sum=7.57 log_scoreRatio_sum=-1.63 focal_scoreRatio_sum=2.71
AlnScore=2613 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Canis_familiaris
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000343246 | HOXA1 | q1 | q1 | 130 | 36 | 23023008 | 23023340 | 1 | 1 | 33.1% | 59.5% | 333 | 0.67 / 0.8 = 0.84 | noComparaHits: | 3 |
p4 | --- | gapq | ENSP00000222718 | HOXA2 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q2 | +/+ | ENSP00000324884 | HOXA3 | q2 | q2 | 384 | 36 | 23003981 | 23007248 | 1 | 2 | 100% | 49.1% | 1263 | 0.51 / 0.54 = 0.94 | between_species_paralog: HOXD3 | 2 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q3 | +/+ | ENSP00000353151 | HOXA4 | q3 | q3 | 158 | 36 | 22988048 | 22988275 | 1 | 1 | 23.8% | 96.1% | 228 | 0.63 / 0.76 = 0.83 | between_species_paralog: HOXD4 | 4 |
p8 | --- | gapq | ENSP00000222726 | HOXA5 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000222728 | HOXA6 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q4 | +/+ | ENSP00000242159 | HOXA7 | q4 | q4 | 118 | 36 | 22966651 | 22966935 | 1 | 1 | 40.4% | 62.1% | 285 | 0.72 / 0.75 = 0.96 | noComparaHits: HOXD8 | 9 |
p11 | q5 | +/+ | ENSP00000343619 | HOXA9 | q5 | q5 | 151 | 36 | 22958837 | 22959100 | 1 | 1 | 29.4% | 80.7% | 264 | 0.56 / 0.73 = 0.77 | noComparaHits: ENSCAFG00000023404 | 3 |
p12 | q6 | +/+ | ENSP00000283921 | HOXA10 | q6 | q6 | 261 | 36 | 22951623 | 22954001 | 1 | 2 | 73% | 52.6% | 723 | 0.64 / 0.64 = 1 | noComparaHits: 488415 | 2 |
p13 | q7 | +/+ | ENSP00000006015 | HOXA11 | q7 | q7 | 146 | 36 | 22943533 | 22943754 | 1 | 1 | 23.6% | 91.9% | 222 | 0.46 / 0.73 = 0.63 | between_species_paralog: HOXD11 | 3 |
p14 | q8 | +/+ | ENSP00000222753 | HOXA13 | q8 | q8 | 127 | 36 | 22929090 | 22929329 | 1 | 1 | 20.6% | 77.5% | 240 | 0.58 / 0.8 = 0.72 | noComparaHits: | 4 |
p15 | q9 | +/+ | ENSP00000222761 | EVX1 | q9 | q9 | 267 | 36 | 22914522 | 22916748 | -1 | 2 | 56.5% | 51.2% | 879 | 0.51 / 0.58 = 0.88 | between_species_paralog: EVX2 | 2 |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 50 (region 7 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_5303 -i 229470:277218 -f 36e3 some_geneID_to_be_selected
scoreRatio_sum=5.85 log_scoreRatio_sum=-0.15 focal_scoreRatio_sum=2.57
AlnScore=2477 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q1 | +/+ | ENSP00000324884 | HOXA3 | q1 | q1 | 392.9 | contig_5303 | 275876 | 277218 | 1 | 2 | 100% | 48.8% | 1260 | 0.51 / 0.53 = 0.96 | noComparaHits: ENSGACG00000004548 | 2 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000353151 | HOXA4 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000222726 | HOXA5 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000222728 | HOXA6 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q2 | +/+ | ENSP00000242159 | HOXA7 | q2 | q2 | 124 | contig_5303 | 266978 | 267244 | 1 | 1 | 38.7% | 66.3% | 267 | 0.72 / 0.74 = 0.97 | noComparaHits: ENSGACG00000004551 | 8 |
p11 | q3 | +/+ | ENSP00000343619 | HOXA9 | q3 | q3 | 223.6 | contig_5303 | 254138 | 255336 | 1 | 2 | 89% | 50% | 708 | 0.56 / 0.61 = 0.92 | noComparaHits: Q4VQD4_GASAC | 3 |
p12 | q4 | +/+ | ENSP00000283921 | HOXA10 | q4 | q4 | 254.2 | contig_5303 | 250317 | 252028 | 1 | 2 | 73% | 49.8% | 714 | 0.64 / 0.65 = 0.98 | noComparaHits: ENSGACG00000004564 | 2 |
p13 | q5 | +/+ | ENSP00000006015 | HOXA11 | q5 | q5 | 299 | contig_5303 | 245553 | 246909 | 1 | 2 | 93.9% | 53% | 834 | 0.46 / 0.45 = 1.02 | noComparaHits: ENSGACG00000004569 | 4 |
p14 | --- | gapq | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | q6 | +/+ | ENSP00000222761 | EVX1 | q6 | q6 | 312 | contig_5303 | 229470 | 230732 | -1 | 2 | 63.1% | 58.1% | 852 | 0.51 / 0.51 = 1 | noComparaHits: ENSGACG00000004579 | 2 |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 51 (region 8 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l groupXVI -i 9792262:9840010 -f 36e3 some_geneID_to_be_selected
scoreRatio_sum=5.85 log_scoreRatio_sum=-0.15 focal_scoreRatio_sum=2.57
AlnScore=2477 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q1 | +/+ | ENSP00000324884 | HOXA3 | q1 | q1 | 392.9 | groupXVI | 9792262 | 9793604 | -1 | 2 | 100% | 48.8% | 1260 | 0.51 / 0.53 = 0.96 | between_species_paralog: ENSGACG00000004548 | 2 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000353151 | HOXA4 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000222726 | HOXA5 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000222728 | HOXA6 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q2 | +/+ | ENSP00000242159 | HOXA7 | q2 | q2 | 124 | groupXVI | 9802236 | 9802502 | -1 | 1 | 38.7% | 66.3% | 267 | 0.72 / 0.74 = 0.97 | noComparaHits: ENSGACG00000004551 | 8 |
p11 | q3 | +/+ | ENSP00000343619 | HOXA9 | q3 | q3 | 223.6 | groupXVI | 9814144 | 9815342 | -1 | 2 | 89% | 50% | 708 | 0.56 / 0.61 = 0.92 | between_species_paralog: Q4VQD4_GASAC | 3 |
p12 | q4 | +/+ | ENSP00000283921 | HOXA10 | q4 | q4 | 254.2 | groupXVI | 9817452 | 9819163 | -1 | 2 | 73% | 49.8% | 714 | 0.64 / 0.65 = 0.98 | noComparaHits: ENSGACG00000004564 | 2 |
p13 | q5 | +/+ | ENSP00000006015 | HOXA11 | q5 | q5 | 299 | groupXVI | 9822571 | 9823927 | -1 | 2 | 93.9% | 53% | 834 | 0.46 / 0.45 = 1.02 | between_species_paralog: ENSGACG00000004569 | 4 |
p14 | --- | gapq | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | q6 | +/+ | ENSP00000222761 | EVX1 | q6 | q6 | 312 | groupXVI | 9838748 | 9840010 | 1 | 2 | 63.1% | 58.1% | 852 | 0.51 / 0.51 = 1 | between_species_paralog: ENSGACG00000004579 | 2 |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 52 (region 5 for Trub)
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_100 -i 339085:380283 -f 31e3 some_geneID_to_be_selected
scoreRatio_sum=5.84 log_scoreRatio_sum=-0.15 focal_scoreRatio_sum=2.62
AlnScore=2461 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Takifugu_rubripes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q1 | +/+ | ENSP00000324884 | HOXA3 | q1 | q1 | 378.9 | scaffold_100 | 339085 | 340364 | -1 | 2 | 100% | 47.3% | 1224 | 0.51 / 0.55 = 0.93 | between_species_paralog: NEWSINFRUG00000124774 | 3 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000353151 | HOXA4 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000222726 | HOXA5 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000222728 | HOXA6 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q2 | +/+ | ENSP00000242159 | HOXA7 | q2 | q2 | 118 | scaffold_100 | 348468 | 348692 | -1 | 1 | 32.6% | 73.3% | 225 | 0.72 / 0.75 = 0.96 | noComparaHits: NEWSINFRUG00000124775 | 3 |
p11 | q3 | +/+ | ENSP00000343619 | HOXA9 | q3 | q3 | 238.4 | scaffold_100 | 358383 | 359535 | -1 | 2 | 100% | 45.8% | 807 | 0.56 / 0.58 = 0.97 | between_species_paralog: NEWSINFRUG00000124776 | 3 |
p12 | q4 | +/+ | ENSP00000283921 | HOXA10 | q4 | q4 | 268 | scaffold_100 | 361352 | 362867 | -1 | 2 | 99.2% | 43.3% | 1017 | 0.64 / 0.63 = 1.02 | noComparaHits: NEWSINFRUG00000124778 | 1 |
p13 | q5 | +/+ | ENSP00000006015 | HOXA11 | q5 | q5 | 291 | scaffold_100 | 366034 | 367375 | -1 | 2 | 99.4% | 48.6% | 843 | 0.46 / 0.47 = 0.98 | between_species_paralog: NEWSINFRUG00000162044 | 4 |
p14 | --- | gapq | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | q6 | +/+ | ENSP00000222761 | EVX1 | q6 | q6 | 302 | scaffold_100 | 379149 | 380283 | 1 | 2 | 62.4% | 58% | 837 | 0.51 / 0.52 = 0.98 | between_species_paralog: NEWSINFRUG00000158421 | 2 |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 53 (region 5 for Btau)
retrieve target region: getEnsemblProteins.pl -h Bos_taurus -l 5 -i 16729720:16874969 -f 11e4 some_geneID_to_be_selected
scoreRatio_sum=6.02 log_scoreRatio_sum=-1.12 focal_scoreRatio_sum=2.6
AlnScore=2405 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Bos_taurus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q1 | +/+ | ENSP00000353151 | HOXA4 | q1 | q1 | 167 | 5 | 16729822 | 16730193 | -1 | 1 | 36.9% | 67.7% | 372 | 0.63 / 0.75 = 0.84 | between_species_paralog: HOXC4 | 5 |
p8 | q2 | +/+ | ENSP00000222726 | HOXA5 | q2 | q2 | 193.9 | 5 | 16749689 | 16751039 | -1 | 2 | 94.4% | 45.1% | 657 | 0.42 / 0.65 = 0.65 | noComparaHits: HOXC5 | 2 |
p9 | q3 | +/+ | ENSP00000222728 | HOXA6 | q3 | q3 | 215.3 | 5 | 16754335 | 16755703 | -1 | 2 | 98.3% | 48.5% | 663 | 0.49 / 0.56 = 0.87 | between_species_paralog: Q28015_BOVIN | 2 |
p10 | q4 | +/+ | ENSP00000242159 | HOXA7 | q3 | q4 | 112 | 5 | 16772495 | 16772704 | -1 | 1 | 30% | 77.1% | 210 | 0.72 / 0.76 = 0.95 | noComparaHits: HOXC8 | 9 |
p11 | q5 | +/+ | ENSP00000343619 | HOXA9 | q5 | q5 | 249.6 | 5 | 16811872 | 16814511 | -1 | 2 | 100% | 49.1% | 804 | 0.56 / 0.56 = 1 | between_species_paralog: HOXC9 | 2 |
p12 | --- | gapq | ENSP00000283921 | HOXA10 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | q6 | +/+ | ENSP00000006015 | HOXA11 | q6 | q6 | 289 | 5 | 16838893 | 16841018 | -1 | 2 | 93.9% | 52.7% | 858 | 0.46 / 0.47 = 0.98 | between_species_paralog: HOXC11 | 2 |
p14 | q7 | +/+ | ENSP00000222753 | HOXA13 | q7 | q7 | 134 | 5 | 16868590 | 16868829 | -1 | 1 | 20.6% | 82.5% | 240 | 0.58 / 0.79 = 0.73 | between_species_paralog: HOXC13 | 4 |
p15 | --- | gapq | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gapq | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gapq | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
--- | q8 | gape | - | - | - | q8 | - | - | - | - | - | - | - | - | - | - | - | - |
region 54 (region 6 for Trub)
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_346 -i 159537:226531 -f 50e3 some_geneID_to_be_selected
scoreRatio_sum=6.91 log_scoreRatio_sum=1.81 focal_scoreRatio_sum=1.32
AlnScore=2379 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Takifugu_rubripes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000324884 | HOXA3 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000353151 | HOXA4 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q1 | +/+ | ENSP00000222726 | HOXA5 | q1 | q1 | 345 | scaffold_346 | 225068 | 226444 | 1 | 2 | 100% | 62.9% | 828 | 0.42 / 0.38 = 1.11 | ortholog_one2one: NEWSINFRUG00000149630 | 1 |
p9 | --- | gapq | ENSP00000222728 | HOXA6 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gapq | ENSP00000242159 | HOXA7 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000343619 | HOXA9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gapq | ENSP00000283921 | HOXA10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gapq | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q2 | +/+ | ENSP00000222753 | HOXA13 | q2 | q2 | 257 | scaffold_346 | 195267 | 196172 | 1 | 2 | 45.9% | 72.2% | 522 | 0.58 / 0.59 = 0.98 | ortholog_one2many: NEWSINFRUG00000162059 | 5 |
p15 | q3 | +/+ | ENSP00000222761 | EVX1 | q3 | q3 | 465.8 | scaffold_346 | 186282 | 188494 | -1 | 3 | 98.5% | 61% | 1134 | 0.51 / 0.26 = 1.96 | ortholog_one2many: NEWSINFRUG00000165271 | 1 |
p16 | --- | gapq | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | q4 | +/+ | ENSP00000265395 | HIBADH | q4 | q4 | 458.4 | scaffold_346 | 159537 | 172894 | 1 | 5 | 87.5% | 67.2% | 1011 | 1 / 0.35 = 2.86 | ortholog_one2many: NEWSINFRUG00000149653 | 2 |
region 55 (region 5 for Olat)
retrieve target region: getEnsemblProteins.pl -h Oryzias_latipes -l 21 -i 24590626:24637174 -f 35e3 some_geneID_to_be_selected
scoreRatio_sum=5.66 log_scoreRatio_sum=-0.35 focal_scoreRatio_sum=2.56
AlnScore=2361 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Oryzias_latipes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q1 | +/+ | ENSP00000324884 | HOXA3 | q1 | q1 | 390.2 | 21 | 24635889 | 24637174 | 1 | 2 | 99.5% | 49.4% | 1188 | 0.51 / 0.53 = 0.96 | between_species_paralog: Q3V5Z9_ORYLA | 2 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000353151 | HOXA4 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000222726 | HOXA5 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000222728 | HOXA6 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q2 | +/+ | ENSP00000242159 | HOXA7 | q2 | q2 | 118 | 21 | 24627518 | 24627742 | 1 | 1 | 32.6% | 73.3% | 225 | 0.72 / 0.75 = 0.96 | noComparaHits: Q3V5Z9_ORYLA
; Q3V5Z8_ORYLA |
7 |
p11 | q3 | +/+ | ENSP00000343619 | HOXA9 | q3 | q3 | 245 | 21 | 24614922 | 24616108 | 1 | 2 | 100% | 47.2% | 792 | 0.56 / 0.57 = 0.98 | between_species_paralog: HXD9_ORYLA | 3 |
p12 | q4 | +/+ | ENSP00000283921 | HOXA10 | q4 | q4 | 257.4 | 21 | 24611637 | 24613192 | 1 | 2 | 77.1% | 50% | 747 | 0.64 / 0.64 = 1 | noComparaHits: Q9PVQ4_ORYLA | 3 |
p13 | q5 | +/+ | ENSP00000006015 | HOXA11 | q5 | q5 | 241.1 | 21 | 24606920 | 24608287 | 1 | 2 | 79.2% | 50.6% | 717 | 0.46 / 0.56 = 0.82 | between_species_paralog: Q3V5Z5_ORYLA | 4 |
p14 | --- | gapq | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | q6 | +/+ | ENSP00000222761 | EVX1 | q6 | q6 | 289 | 21 | 24590626 | 24591591 | -1 | 2 | 48.6% | 70.7% | 597 | 0.51 / 0.54 = 0.94 | between_species_paralog: Q2WFR6_ORYLA | 2 |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 56 (region 5 for Tnig)
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l 2 -i 11075386:11405199 -f 25e4 some_geneID_to_be_selected
scoreRatio_sum=5.58 log_scoreRatio_sum=-0.44 focal_scoreRatio_sum=2.55
AlnScore=2296 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Tetraodon_nigroviridis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q1 | +/+ | ENSP00000324884 | HOXA3 | q1 | q1 | 296 | 2 | 11075386 | 11076606 | -1 | 1 | 88.3% | 43.7% | 1221 | 0.51 / 0.64 = 0.8 | between_species_paralog: GSTENG00031464001
; HOXD3 |
3 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000353151 | HOXA4 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gapq | ENSP00000222726 | HOXA5 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000222728 | HOXA6 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q2 | +/+ | ENSP00000242159 | HOXA7 | q2 | q2 | 119.3 | 2 | 11087965 | 11088196 | -1 | 2 | 32.2% | 71.4% | 231 | 0.72 / 0.75 = 0.96 | noComparaHits: HOXD4
; GSTENG00031463001 |
3 |
p11 | q3 | +/+ | ENSP00000343619 | HOXA9 | q3 | q3 | 232.2 | 2 | 11097817 | 11098947 | -1 | 2 | 82.4% | 53.1% | 672 | 0.56 / 0.59 = 0.95 | between_species_paralog: GSTENG00031462001 | 3 |
p12 | q4 | +/+ | ENSP00000283921 | HOXA10 | q4 | q4 | 264 | 2 | 11100577 | 11102050 | -1 | 2 | 99.2% | 42.5% | 1080 | 0.64 / 0.63 = 1.02 | noComparaHits: GSTENG00031461001
; HOXD10 |
3 |
p13 | q5 | +/+ | ENSP00000006015 | HOXA11 | q5 | q5 | 280 | 2 | 11104976 | 11106361 | -1 | 2 | 88.8% | 53% | 777 | 0.46 / 0.49 = 0.94 | between_species_paralog: HOXD11 | 4 |
p14 | --- | gapq | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | q6 | +/+ | ENSP00000222761 | EVX1 | q6 | q6 | 280 | 2 | 11117771 | 11118889 | 1 | 2 | 62.4% | 54.9% | 837 | 0.51 / 0.56 = 0.91 | between_species_paralog: HOXD-EVX
; GSTENG00031458001 |
2 |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 57 (region 2 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 27 -i 3253607:3641424 -f 29e4 some_geneID_to_be_selected
scoreRatio_sum=6.13 log_scoreRatio_sum=-0.97 focal_scoreRatio_sum=2.01
AlnScore=2290 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000343246 | HOXA1 | q1 | q1 | 157 | 27 | 3640987 | 3641301 | 1 | 1 | 33.4% | 73.2% | 315 | 0.67 / 0.76 = 0.88 | noComparaHits: HXB1_CHICK
; HXB8_CHICK |
2 |
p4 | q2 | +/+ | ENSP00000222718 | HOXA2 | q2 | q2 | 175 | 27 | 3625335 | 3625955 | 1 | 1 | 67.6% | 45.6% | 621 | 0.58 / 0.76 = 0.76 | noComparaHits: HXB8_CHICK | 2 |
p5 | q3 | +/+ | ENSP00000324884 | HOXA3 | q3 | q3 | 436 | 27 | 3615199 | 3617444 | 1 | 2 | 100% | 52.5% | 1212 | 0.51 / 0.48 = 1.06 | between_species_paralog: HXB3_CHICK | 2 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000353151 | HOXA4 | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q4 | +/+ | ENSP00000222726 | HOXA5 | q4 | q4 | 253.6 | 27 | 3584442 | 3586617 | 1 | 2 | 57% | 73.5% | 486 | 0.42 / 0.54 = 0.78 | ortholog_one2many: HXB5_CHICK | 1 |
p9 | --- | gapq | ENSP00000222728 | HOXA6 | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q5 | +/+ | ENSP00000242159 | HOXA7 | q4 | q5 | 113 | 27 | 3580236 | 3580454 | 1 | 1 | 31.3% | 74% | 219 | 0.72 / 0.76 = 0.95 | noComparaHits: HXB8_CHICK | 7 |
p11 | q6 | +/+ | ENSP00000343619 | HOXA9 | q6 | q6 | 146 | 27 | 3567989 | 3568219 | 1 | 1 | 28.3% | 87% | 231 | 0.56 / 0.74 = 0.76 | between_species_paralog: HOXB9 | 3 |
p12 | --- | gapq | ENSP00000283921 | HOXA10 | q6 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gapq | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q7 | +/+ | ENSP00000222753 | HOXA13 | q7 | q7 | 242 | 27 | 3518826 | 3521213 | 1 | 2 | 65.5% | 53.5% | 726 | 0.58 / 0.62 = 0.94 | between_species_paralog: HOXB13 | 2 |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 58 (region 4 for Mmul)
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 11 -i 51036974:51154556 -f 88e3 some_geneID_to_be_selected
scoreRatio_sum=6.17 log_scoreRatio_sum=-0.91 focal_scoreRatio_sum=2.85
AlnScore=2268 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Macaca_mulatta
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q1 | +/+ | ENSP00000353151 | HOXA4 | q1 | q1 | 166 | 11 | 51154227 | 51154544 | 1 | 1 | 31.6% | 75.5% | 318 | 0.63 / 0.75 = 0.84 | between_species_paralog: HOXC4 | 3 |
p8 | --- | gapq | ENSP00000222726 | HOXA5 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | q2 | +/+ | ENSP00000222728 | HOXA6 | q2 | q2 | 215.3 | 11 | 51127353 | 51128727 | 1 | 2 | 98.3% | 48.5% | 663 | 0.49 / 0.56 = 0.87 | between_species_paralog: HOXC6 | 3 |
p10 | q3 | +/+ | ENSP00000242159 | HOXA7 | q2 | q3 | 110 | 11 | 51109486 | 51109680 | 1 | 1 | 28.3% | 76.9% | 195 | 0.72 / 0.77 = 0.94 | noComparaHits: HOXC8 | noData |
p11 | q4 | +/+ | ENSP00000343619 | HOXA9 | q4 | q4 | 251 | 11 | 51098616 | 51101083 | 1 | 2 | 100% | 49% | 819 | 0.56 / 0.56 = 1 | between_species_paralog: HOXC9 | 2 |
p12 | q5 | +/+ | ENSP00000283921 | HOXA10 | q5 | q5 | 164 | 11 | 51087619 | 51087885 | 1 | 1 | 22.4% | 88.8% | 267 | 0.64 / 0.77 = 0.83 | noComparaHits: HOXC10 | 3 |
p13 | q6 | +/+ | ENSP00000006015 | HOXA11 | q6 | q6 | 284 | 11 | 51071372 | 51073479 | 1 | 2 | 92% | 51.8% | 858 | 0.46 / 0.48 = 0.96 | between_species_paralog: HOXC11 | 2 |
p14 | q7 | +/+ | ENSP00000222753 | HOXA13 | q7 | q7 | 131 | 11 | 51043078 | 51043344 | 1 | 1 | 21.9% | 77.5% | 267 | 0.58 / 0.79 = 0.73 | between_species_paralog: HOXC13 | 4 |
p15 | --- | gapq | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gapq | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gapq | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
--- | q8 | gape | - | - | - | q8 | - | - | - | - | - | - | - | - | - | - | - | - |
region 59 (region 4 for Cfam)
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 27 -i 4211959:4324539 -f 84e3 some_geneID_to_be_selected
scoreRatio_sum=5.85 log_scoreRatio_sum=-1.3 focal_scoreRatio_sum=2.04
AlnScore=2232 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Canis_familiaris
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q1 | +/+ | ENSP00000353151 | HOXA4 | q1 | q1 | 166 | 27 | 4211971 | 4212288 | -1 | 1 | 31.6% | 75.5% | 318 | 0.63 / 0.75 = 0.84 | between_species_paralog: 486498 | 2 |
p8 | q2 | +/+ | ENSP00000222726 | HOXA5 | q2 | q2 | 193.2 | 27 | 4231293 | 4232665 | -1 | 2 | 94.4% | 43.9% | 657 | 0.42 / 0.65 = 0.65 | noComparaHits: 607625 | 2 |
p9 | q3 | +/+ | ENSP00000222728 | HOXA6 | q3 | q3 | 215.3 | 27 | 4236058 | 4237443 | -1 | 2 | 98.3% | 48.5% | 663 | 0.49 / 0.56 = 0.87 | between_species_paralog: 486499 | 3 |
p10 | q4 | +/+ | ENSP00000242159 | HOXA7 | q3 | q4 | 112 | 27 | 4254366 | 4254575 | -1 | 1 | 30% | 77.1% | 210 | 0.72 / 0.76 = 0.95 | noComparaHits: 607052 | noData |
p11 | --- | gapq | ENSP00000343619 | HOXA9 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q5 | +/+ | ENSP00000283921 | HOXA10 | q5 | q5 | 224.5 | 27 | 4274733 | 4278842 | -1 | 2 | 89.8% | 42.7% | 891 | 0.64 / 0.69 = 0.93 | noComparaHits: HOXC10 | 3 |
p13 | q6 | +/+ | ENSP00000006015 | HOXA11 | q6 | q6 | 264 | 27 | 4288983 | 4290950 | -1 | 2 | 89.5% | 52.1% | 822 | 0.46 / 0.52 = 0.88 | between_species_paralog: HOXC11 | 2 |
p14 | q7 | +/+ | ENSP00000222753 | HOXA13 | q7 | q7 | 134 | 27 | 4318394 | 4318630 | -1 | 1 | 20.4% | 83.5% | 237 | 0.58 / 0.79 = 0.73 | between_species_paralog: HOXC13 | 3 |
p15 | --- | gapq | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gapq | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gapq | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
--- | q8 | gape | - | - | - | q8 | - | - | - | - | - | - | - | - | - | - | - | - |
region 60 (region 6 for Drer)
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 2 -i 12067389:12108344 -f 31e3 some_geneID_to_be_selected
scoreRatio_sum=4.95 log_scoreRatio_sum=-0.07 focal_scoreRatio_sum=2.28
AlnScore=2133 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000353151 | HOXA4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000222726 | HOXA5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000222728 | HOXA6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000242159 | HOXA7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q1 | +/+ | ENSP00000343619 | HOXA9 | q1 | q1 | 251 | 2 | 12067416 | 12068514 | -1 | 2 | 100% | 48.7% | 783 | 0.56 / 0.56 = 1 | between_species_paralog: hoxd9a | 2 |
p12 | q2 | +/+ | ENSP00000283921 | HOXA10 | q2 | q2 | 262 | 2 | 12071103 | 12072801 | -1 | 2 | 73% | 52.6% | 717 | 0.64 / 0.63 = 1.02 | noComparaHits: hoxd10a | 2 |
p13 | q3 | +/+ | ENSP00000006015 | HOXA11 | q3 | q3 | 306 | 2 | 12079182 | 12080873 | -1 | 2 | 91.1% | 55.8% | 825 | 0.46 / 0.44 = 1.05 | between_species_paralog: hoxd11a | 2 |
p14 | q4 | +/+ | ENSP00000222753 | HOXA13 | q4 | q4 | 169 | 2 | 12090569 | 12092891 | -1 | 2 | 46.9% | 52.7% | 522 | 0.58 / 0.73 = 0.79 | noComparaHits: hoxd13a | 6 |
p15 | q5 | +/+ | ENSP00000222761 | EVX1 | q5 | q5 | 333 | 2 | 12106949 | 12108344 | 1 | 2 | 62.9% | 62.5% | 843 | 0.51 / 0.47 = 1.09 | between_species_paralog: evx2 | 2 |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 61 (region 7 for Drer)
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 12 -i 34137768:34671880 -f 40e4 some_geneID_to_be_selected
scoreRatio_sum=5.17 log_scoreRatio_sum=0.11 focal_scoreRatio_sum=1.26
AlnScore=1868 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
--- | q1 | gaps | - | - | - | q1 | - | - | - | - | - | - | - | - | - | - | - | - |
--- | q2 | gaps | - | - | - | q2 | - | - | - | - | - | - | - | - | - | - | - | - |
p1 | q3 | +/+ | ENSP00000005587 | SKAP2 | q3 | q3 | 224.6 | 12 | 34409718 | 34418907 | -1 | 4 | 42.9% | 54.9% | 546 | 0.91 / 0.67 = 1.36 | between_species_paralog: scap2 | 3 |
--- | q4 | gapp | - | - | - | q4 | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gapq | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q5 | +/+ | ENSP00000343246 | HOXA1 | q5 | q5 | 197.1 | 12 | 34625679 | 34626700 | -1 | 2 | 97.9% | 40.4% | 939 | 0.67 / 0.7 = 0.96 | noComparaHits: hoxb1b | 3 |
--- | q6 | gapp | - | - | - | q6 | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gapq | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gapq | ENSP00000324884 | HOXA3 | q4,q7 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000353151 | HOXA4 | q4,q7 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q7 | +/+ | ENSP00000222726 | HOXA5 | q4,q7 | q7 | 307 | 12 | 34660335 | 34661610 | -1 | 2 | 98.1% | 57.2% | 816 | 0.42 / 0.45 = 0.93 | between_species_paralog: hoxb5b | 2 |
p9 | q8 | +/+ | ENSP00000222728 | HOXA6 | q2 | q8 | 244 | 12 | 34663027 | 34664134 | -1 | 2 | 99.6% | 57.6% | 675 | 0.49 / 0.51 = 0.96 | between_species_paralog: hoxb6b | 3 |
p10 | q9 | +/+ | ENSP00000242159 | HOXA7 | q4,q7 | q9 | 118 | 12 | 34671626 | 34671844 | -1 | 1 | 31.3% | 76.7% | 219 | 0.72 / 0.75 = 0.96 | noComparaHits: hoxb8b | 8 |
p11 | --- | gape | ENSP00000343619 | HOXA9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000283921 | HOXA10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 62 (region 3 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 7 -i 17361489:17447372 -f 64e3 some_geneID_to_be_selected
scoreRatio_sum=5.57 log_scoreRatio_sum=-1.67 focal_scoreRatio_sum=1.4
AlnScore=1803 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000343246 | HOXA1 | q1 | q1 | 100 | 7 | 17361489 | 17361713 | -1 | 1 | 21.8% | 62.7% | 225 | 0.67 / 0.85 = 0.79 | apparent_ortholog_one2one: HM1_CHICK | 3 |
p4 | --- | gapq | ENSP00000222718 | HOXA2 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q2 | +/+ | ENSP00000324884 | HOXA3 | q2 | q2 | 331 | 7 | 17369712 | 17371223 | -1 | 1 | 100% | 42.2% | 1512 | 0.51 / 0.6 = 0.85 | between_species_paralog: HOXD3 | 3 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q3 | +/+ | ENSP00000353151 | HOXA4 | q3 | q3 | 220.3 | 7 | 17386804 | 17387758 | -1 | 2 | 90% | 47.1% | 657 | 0.63 / 0.67 = 0.94 | between_species_paralog: HXD4_CHICK | 2 |
p8 | --- | gapq | ENSP00000222726 | HOXA5 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gapq | ENSP00000222728 | HOXA6 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q4 | +/+ | ENSP00000242159 | HOXA7 | q4 | q4 | 119 | 7 | 17402529 | 17402867 | -1 | 1 | 49.6% | 57.1% | 339 | 0.72 / 0.75 = 0.96 | noComparaHits: NP_997060.1 | 5 |
p11 | --- | gapq | ENSP00000343619 | HOXA9 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gapq | ENSP00000283921 | HOXA10 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | q5 | +/+ | ENSP00000006015 | HOXA11 | q5 | q5 | 146 | 7 | 17425091 | 17425312 | -1 | 1 | 23.6% | 91.9% | 222 | 0.46 / 0.73 = 0.63 | between_species_paralog: NP_989951.1 | 3 |
p14 | q6 | +/+ | ENSP00000222753 | HOXA13 | q6 | q6 | 125 | 7 | 17438767 | 17439009 | -1 | 1 | 20.9% | 75.3% | 243 | 0.58 / 0.8 = 0.72 | ortholog_one2many: HXD13_CHICK | 4 |
p15 | q7 | +/+ | ENSP00000222761 | EVX1 | q7 | q7 | 158.5 | 7 | 17445615 | 17447372 | 1 | 2 | 34.2% | 60.8% | 435 | 0.51 / 0.75 = 0.68 | between_species_paralog: EVX2 | 2 |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 63 (region 7 for Trub)
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_130 -i 627432:666433 -f 29e3 some_geneID_to_be_selected
scoreRatio_sum=4.81 log_scoreRatio_sum=-0.36 focal_scoreRatio_sum=0.86
AlnScore=1800 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Takifugu_rubripes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000005587 | SKAP2 | q1 | q1 | 236.8 | scaffold_130 | 661927 | 666433 | 1 | 5 | 42.1% | 62.3% | 477 | 0.91 / 0.65 = 1.4 | between_species_paralog: NEWSINFRUG00000131123 | 2 |
p2 | --- | gapq | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q2 | +/+ | ENSP00000343246 | HOXA1 | q2 | q2 | 199.1 | scaffold_130 | 641213 | 642315 | 1 | 2 | 91.6% | 41.3% | 846 | 0.67 / 0.7 = 0.96 | noComparaHits: NEWSINFRUG00000166087
; NEWSINFRUG00000131120 |
2 |
p4 | --- | gapq | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q3 | +/+ | ENSP00000324884 | HOXA3 | q3 | q3 | 126 | scaffold_130 | 639540 | 639908 | 1 | 1 | 27.3% | 56.1% | 369 | 0.51 / 0.85 = 0.6 | noComparaHits: NEWSINFRUG00000161068 | 4 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000353151 | HOXA4 | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q4 | +/+ | ENSP00000222726 | HOXA5 | q4 | q4 | 303 | scaffold_130 | 630265 | 631534 | 1 | 2 | 97.8% | 59.2% | 825 | 0.42 / 0.46 = 0.91 | between_species_paralog: NEWSINFRUG00000132774 | 3 |
p9 | q5 | +/+ | ENSP00000222728 | HOXA6 | q5 | q5 | 239.2 | scaffold_130 | 627432 | 629052 | 1 | 2 | 98.7% | 54% | 693 | 0.49 / 0.52 = 0.94 | between_species_paralog: NEWSINFRUG00000156875 | 1 |
p10 | --- | gape | ENSP00000242159 | HOXA7 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000343619 | HOXA9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000283921 | HOXA10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 64 (region 6 for Olat)
retrieve target region: getEnsemblProteins.pl -h Oryzias_latipes -l 19 -i 17550439:17594165 -f 33e3 some_geneID_to_be_selected
scoreRatio_sum=4.67 log_scoreRatio_sum=-0.47 focal_scoreRatio_sum=0.84
AlnScore=1725 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Oryzias_latipes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000005587 | SKAP2 | q1 | q1 | 196.7 | 19 | 17550439 | 17555332 | -1 | 4 | 35.7% | 61.7% | 384 | 0.91 / 0.71 = 1.28 | noComparaHits: | 1 |
p2 | --- | gapq | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q2 | +/+ | ENSP00000343246 | HOXA1 | q2 | q2 | 199.8 | 19 | 17578412 | 17579423 | -1 | 2 | 93.7% | 42.3% | 831 | 0.67 / 0.7 = 0.96 | noComparaHits: Q3V613_ORYLA | 2 |
p4 | --- | gapq | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q3 | +/+ | ENSP00000324884 | HOXA3 | q3 | q3 | 137 | 19 | 17580602 | 17581048 | -1 | 1 | 34.8% | 53.2% | 447 | 0.51 / 0.83 = 0.61 | noComparaHits: Q3V612_ORYLA | 4 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000353151 | HOXA4 | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q4 | +/+ | ENSP00000222726 | HOXA5 | q4 | q4 | 288 | 19 | 17590222 | 17591540 | -1 | 2 | 97.8% | 56.2% | 828 | 0.42 / 0.48 = 0.88 | between_species_paralog: Q3V611_ORYLA | 2 |
p9 | q5 | +/+ | ENSP00000222728 | HOXA6 | q5 | q5 | 237.8 | 19 | 17592687 | 17594165 | -1 | 2 | 98.7% | 52.1% | 699 | 0.49 / 0.52 = 0.94 | between_species_paralog: Q9PVR5_ORYLA | 1 |
p10 | --- | gape | ENSP00000242159 | HOXA7 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000343619 | HOXA9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000283921 | HOXA10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 65 (region 9 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_2345 -i 57:24078 -f 18e3 some_geneID_to_be_selected
scoreRatio_sum=3.84 log_scoreRatio_sum=0.73 focal_scoreRatio_sum=1.35
AlnScore=1646 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000353151 | HOXA4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000222726 | HOXA5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000222728 | HOXA6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000242159 | HOXA7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000343619 | HOXA9 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q1 | +/+ | ENSP00000283921 | HOXA10 | q1 | q1 | 306 | contig_2345 | 4545 | 6328 | -1 | 2 | 100% | 47.8% | 1086 | 0.64 / 0.57 = 1.12 | noComparaHits: ENSGACG00000007128 | 1 |
p13 | q2 | +/+ | ENSP00000006015 | HOXA11 | q2 | q2 | 357 | contig_2345 | 11801 | 13416 | -1 | 2 | 98.7% | 60.8% | 882 | 0.46 / 0.35 = 1.31 | noComparaHits: ENSGACG00000007132 | 1 |
p14 | q3 | +/+ | ENSP00000222753 | HOXA13 | q3 | q3 | 372 | contig_2345 | 22653 | 24078 | -1 | 2 | 99.7% | 56.9% | 897 | 0.58 / 0.41 = 1.41 | noComparaHits: Q9PWC4_GASAC | 1 |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 66 (region 6 for Tnig)
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l 2 -i 1166948:1437034 -f 20e4 some_geneID_to_be_selected
scoreRatio_sum=4.51 log_scoreRatio_sum=-0.62 focal_scoreRatio_sum=0.83
AlnScore=1601 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Tetraodon_nigroviridis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000005587 | SKAP2 | q1 | q1 | 140.9 | 2 | 1396527 | 1401260 | -1 | 2 | 34.3% | 45.4% | 456 | 0.91 / 0.79 = 1.15 | between_species_paralog: GSTENG00019149001 | 2 |
p2 | --- | gapq | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q2 | +/+ | ENSP00000343246 | HOXA1 | q2 | q2 | 191 | 2 | 1421795 | 1422735 | -1 | 2 | 91.6% | 40% | 873 | 0.67 / 0.71 = 0.94 | noComparaHits: HOXBb1
; GSTENG00019145001 ; GSTENG00039005450 |
2 |
p4 | --- | gapq | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q3 | +/+ | ENSP00000324884 | HOXA3 | q3 | q3 | 107 | 2 | 1424212 | 1424415 | -1 | 1 | 15.3% | 76.5% | 204 | 0.51 / 0.87 = 0.59 | noComparaHits: HOXBb3
; GSTENG00019144001 |
6 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000353151 | HOXA4 | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q4 | +/+ | ENSP00000222726 | HOXA5 | q4 | q4 | 299 | 2 | 1432898 | 1434137 | -1 | 2 | 97.8% | 57.6% | 822 | 0.42 / 0.46 = 0.91 | between_species_paralog: HOXBb5 | 2 |
p9 | q5 | +/+ | ENSP00000222728 | HOXA6 | q5 | q5 | 231.2 | 2 | 1435432 | 1437034 | -1 | 2 | 93.6% | 54.3% | 672 | 0.49 / 0.53 = 0.92 | between_species_paralog: GSTENG00019143001
; HOXBb6 |
1 |
p10 | --- | gape | ENSP00000242159 | HOXA7 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000343619 | HOXA9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000283921 | HOXA10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 67 (region 10 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_2643 -i 4751:46955 -f 32e3 some_geneID_to_be_selected
scoreRatio_sum=4.22 log_scoreRatio_sum=-0.94 focal_scoreRatio_sum=2.09
AlnScore=1566 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q1 | +/+ | ENSP00000353151 | HOXA4 | q1 | q1 | 158 | contig_2643 | 14615 | 14869 | -1 | 1 | 26.6% | 85.9% | 255 | 0.63 / 0.76 = 0.83 | noComparaHits: ENSGACG00000009421 | 3 |
p8 | q2 | +/+ | ENSP00000222726 | HOXA5 | q2 | q2 | 125 | contig_2643 | 24707 | 24898 | -1 | 1 | 23.7% | 87.5% | 192 | 0.42 / 0.77 = 0.55 | noComparaHits: ENSGACG00000009416 | 5 |
p9 | q3 | +/+ | ENSP00000222728 | HOXA6 | q3 | q3 | 218.6 | contig_2643 | 28358 | 29473 | -1 | 2 | 100% | 53.6% | 666 | 0.49 / 0.56 = 0.87 | noComparaHits: Q4VQD3_GASAC | 1 |
p10 | q4 | +/+ | ENSP00000242159 | HOXA7 | q3 | q4 | 112 | contig_2643 | 39207 | 39410 | -1 | 1 | 29.1% | 77.9% | 204 | 0.72 / 0.76 = 0.95 | noComparaHits: ENSGACG00000009401 | noData |
p11 | q5 | +/+ | ENSP00000343619 | HOXA9 | q5 | q5 | 257 | contig_2643 | 45188 | 46955 | -1 | 2 | 98.5% | 50.9% | 771 | 0.56 / 0.55 = 1.02 | noComparaHits: ENSGACG00000009396 | 1 |
p12 | --- | gape | ENSP00000283921 | HOXA10 | q5 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 68 (region 11 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_6417 -i 4655:49226 -f 33e3 some_geneID_to_be_selected
scoreRatio_sum=3.56 log_scoreRatio_sum=-0.62 focal_scoreRatio_sum=0.49
AlnScore=1139 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000005587 | SKAP2 | q1 | q1 | 194.5 | contig_6417 | 4655 | 10098 | -1 | 4 | 38.7% | 56.8% | 417 | 0.91 / 0.71 = 1.28 | noComparaHits: | 2 |
p2 | --- | gapq | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q2 | +/+ | ENSP00000343246 | HOXA1 | q2 | q2 | 199 | contig_6417 | 33810 | 34985 | -1 | 2 | 98.5% | 38.3% | 921 | 0.67 / 0.7 = 0.96 | noComparaHits: ENSGACG00000003939 | 2 |
p4 | --- | gapq | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q3 | +/+ | ENSP00000324884 | HOXA3 | q3 | q3 | 135 | contig_6417 | 36441 | 36872 | -1 | 1 | 32.7% | 51.7% | 432 | 0.51 / 0.84 = 0.61 | noComparaHits: ENSGACG00000003942 | 4 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000353151 | HOXA4 | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q4 | +/+ | ENSP00000222726 | HOXA5 | q4 | q4 | 229.6 | contig_6417 | 45960 | 47297 | -1 | 2 | 97.8% | 45.8% | 861 | 0.42 / 0.59 = 0.71 | noComparaHits: | 3 |
p9 | --- | gape | ENSP00000222728 | HOXA6 | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000242159 | HOXA7 | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000343619 | HOXA9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000283921 | HOXA10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 69 (region 12 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l groupV -i 4569137:4613708 -f 33e3 some_geneID_to_be_selected
scoreRatio_sum=3.56 log_scoreRatio_sum=-0.62 focal_scoreRatio_sum=0.49
AlnScore=1139 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | q1 | +/+ | ENSP00000005587 | SKAP2 | q1 | q1 | 194.5 | groupV | 4569137 | 4574580 | -1 | 4 | 38.7% | 56.8% | 417 | 0.91 / 0.71 = 1.28 | between_species_paralog: ENSGACG00000003929 | 2 |
p2 | --- | gapq | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q2 | +/+ | ENSP00000343246 | HOXA1 | q2 | q2 | 199 | groupV | 4598292 | 4599467 | -1 | 2 | 98.5% | 38.3% | 921 | 0.67 / 0.7 = 0.96 | noComparaHits: ENSGACG00000003939 | 2 |
p4 | --- | gapq | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q3 | +/+ | ENSP00000324884 | HOXA3 | q3 | q3 | 135 | groupV | 4600923 | 4601354 | -1 | 1 | 32.7% | 51.7% | 432 | 0.51 / 0.84 = 0.61 | noComparaHits: ENSGACG00000003942 | 4 |
p6 | --- | gapq | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gapq | ENSP00000353151 | HOXA4 | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q4 | +/+ | ENSP00000222726 | HOXA5 | q4 | q4 | 229.6 | groupV | 4610442 | 4611779 | -1 | 2 | 97.8% | 45.8% | 861 | 0.42 / 0.59 = 0.71 | between_species_paralog: ENSGACG00000003945 | 3 |
p9 | --- | gape | ENSP00000222728 | HOXA6 | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000242159 | HOXA7 | q4 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000343619 | HOXA9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000283921 | HOXA10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 70 (region 13 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_9872 -i 61560:92599 -f 23e3 some_geneID_to_be_selected
scoreRatio_sum=2.65 log_scoreRatio_sum=-0.37 focal_scoreRatio_sum=0.33
AlnScore=986 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | q1 | +/+ | ENSP00000343246 | HOXA1 | q1 | q1 | 131 | contig_9872 | 61563 | 61895 | -1 | 1 | 34% | 61.4% | 333 | 0.67 / 0.8 = 0.84 | noComparaHits: ENSGACG00000005635 | 3 |
p4 | q2 | +/+ | ENSP00000222718 | HOXA2 | q2 | q2 | 285 | contig_9872 | 79254 | 81838 | -1 | 2 | 100% | 43.1% | 1299 | 0.58 / 0.61 = 0.95 | noComparaHits: ENSGACG00000005633 | 3 |
p5 | q3 | +/+ | ENSP00000324884 | HOXA3 | q3 | q3 | 341.5 | contig_9872 | 88587 | 92325 | -1 | 2 | 82.4% | 52.2% | 1140 | 0.51 / 0.59 = 0.86 | noComparaHits: ENSGACG00000005631 | 3 |
p6 | --- | gape | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000353151 | HOXA4 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000222726 | HOXA5 | q3 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000222728 | HOXA6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000242159 | HOXA7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000343619 | HOXA9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000283921 | HOXA10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 71 (region 8 for Drer)
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 11 -i 1379040:1406538 -f 21e3 some_geneID_to_be_selected
scoreRatio_sum=1.76 log_scoreRatio_sum=-0.25 focal_scoreRatio_sum=0.59
AlnScore=855 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000353151 | HOXA4 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000222726 | HOXA5 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | q1 | +/+ | ENSP00000222728 | HOXA6 | q1 | q1 | 208.6 | 11 | 1379082 | 1380153 | -1 | 2 | 97.9% | 46.5% | 666 | 0.49 / 0.58 = 0.84 | between_species_paralog: hoxc6b | 5 |
p10 | --- | gapq | ENSP00000242159 | HOXA7 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gapq | ENSP00000343619 | HOXA9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gapq | ENSP00000283921 | HOXA10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | q2 | /+ | ENSP00000006015 | HOXA11 | q2 | q2 | 273 | 11 | 1404952 | 1406538 | 1 | 2 | 93.3% | 49.5% | 852 | 0.46 / 0.5 = 0.92 | between_species_paralog: hoxc11b | 4 |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 72 (region 14 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_9874 -i 2478:8416 -f 45e2 some_geneID_to_be_selected
scoreRatio_sum=1.55 log_scoreRatio_sum=-0.51 focal_scoreRatio_sum=0.44
AlnScore=795 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000324884 | HOXA3 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000353151 | HOXA4 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | q1 | +/+ | ENSP00000222726 | HOXA5 | q1 | q1 | 287.1 | contig_9874 | 2478 | 4382 | -1 | 3 | 95.2% | 53% | 888 | 0.42 / 0.49 = 0.86 | noComparaHits: ENSGACG00000005626 | 2 |
p9 | q2 | +/+ | ENSP00000222728 | HOXA6 | q2 | q2 | 143 | contig_9874 | 8159 | 8404 | -1 | 1 | 35.2% | 82.9% | 246 | 0.49 / 0.71 = 0.69 | noComparaHits: ENSGACG00000005623 | 2 |
p10 | --- | gape | ENSP00000242159 | HOXA7 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000343619 | HOXA9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000283921 | HOXA10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 73 (region 4 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l Un_random -i 27778776:29265129 -f 11e5 some_geneID_to_be_selected
scoreRatio_sum=2.21 log_scoreRatio_sum=0.14 focal_scoreRatio_sum=1.11
AlnScore=631 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000353151 | HOXA4 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000222726 | HOXA5 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000222728 | HOXA6 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q1 | /+ | ENSP00000242159 | HOXA7 | q1 | q1 | 230.1 | Un_random | 27806968 | 27810035 | -1 | 2 | 83% | 58.9% | 561 | 0.72 / 0.52 = 1.38 | between_species_paralog: HOXB7 | 2 |
p11 | --- | gapq | ENSP00000343619 | HOXA9 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | q2 | /+ | ENSP00000283921 | HOXA10 | q2 | q2 | 167 | Un_random | 27778788 | 27779177 | -1 | 1 | 31% | 67.7% | 390 | 0.64 / 0.77 = 0.83 | ortholog_one2many: 430550 | 2 |
p13 | --- | gape | ENSP00000006015 | HOXA11 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 74 (region 5 for Mmus)
retrieve target region: getEnsemblProteins.pl -h Mus_musculus -l 5 -i 147500117:149361107 -f 14e5 some_geneID_to_be_selected
scoreRatio_sum=1.17 log_scoreRatio_sum=-1.06 focal_scoreRatio_sum=0.14
AlnScore=627 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Mus_musculus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | /+ | ENSP00000328286 | - | q1 | q1 | 206 | 5 | 149360088 | 149361107 | -1 | 2 | 79.3% | 51% | 624 | 0.25 / 0.43 = 0.58 | between_species_paralog: 2810416G20Rik | noData |
p3 | --- | gapq | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gapq | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q2 | +/+ | ENSP00000324884 | HOXA3 | q2 | q2 | 106 | 5 | 147584719 | 147585249 | 1 | 1 | 39.3% | 42.8% | 531 | 0.51 / 0.87 = 0.59 | noComparaHits: Ipf1 | 5 |
p6 | --- | gape | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000353151 | HOXA4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000222726 | HOXA5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000222728 | HOXA6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000242159 | HOXA7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000343619 | HOXA9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000283921 | HOXA10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 75 (region 15 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_9877 -i 4209:26330 -f 17e3 some_geneID_to_be_selected
scoreRatio_sum=1.76 log_scoreRatio_sum=-0.26 focal_scoreRatio_sum=1.27
AlnScore=526 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000353151 | HOXA4 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000222726 | HOXA5 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000222728 | HOXA6 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q1 | +/+ | ENSP00000242159 | HOXA7 | q1 | q1 | 129 | contig_9877 | 4239 | 4511 | -1 | 1 | 44.3% | 61.8% | 273 | 0.72 / 0.73 = 0.99 | noComparaHits: | 3 |
p11 | q2 | +/+ | ENSP00000343619 | HOXA9 | q2 | q2 | 150 | contig_9877 | 17455 | 17751 | -1 | 1 | 34.6% | 73.7% | 297 | 0.56 / 0.73 = 0.77 | noComparaHits: | 6 |
p12 | --- | gape | ENSP00000283921 | HOXA10 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 76 (region 5 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l Un_random -i 11038119:11040291 -f 16e2 some_geneID_to_be_selected
scoreRatio_sum=0.98 log_scoreRatio_sum=-0.01 focal_scoreRatio_sum=0.33
AlnScore=520 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000353151 | HOXA4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000222726 | HOXA5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000222728 | HOXA6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000242159 | HOXA7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000343619 | HOXA9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gaps | ENSP00000283921 | HOXA10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | q1 | +/+ | ENSP00000006015 | HOXA11 | q1 | q1 | 288 | Un_random | 11038119 | 11040291 | -1 | 2 | 99.7% | 49.7% | 855 | 0.46 / 0.47 = 0.98 | between_species_paralog: HOXC11 | 2 |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 77 (region 8 for Trub)
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_3110 -i 2081:3817 -f 13e2 some_geneID_to_be_selected
scoreRatio_sum=1.18 log_scoreRatio_sum=0.17 focal_scoreRatio_sum=0.3
AlnScore=509 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Takifugu_rubripes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000353151 | HOXA4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000222726 | HOXA5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000222728 | HOXA6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000242159 | HOXA7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000343619 | HOXA9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gaps | ENSP00000283921 | HOXA10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gaps | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q1 | +/+ | ENSP00000222753 | HOXA13 | q1 | q1 | 326 | scaffold_3110 | 2081 | 3814 | 1 | 2 | 99.7% | 49.6% | 954 | 0.58 / 0.49 = 1.18 | between_species_paralog: NEWSINFRUG00000160125 | 2 |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 78 (region 6 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l 1 -i 179435642:180368243 -f 70e4 some_geneID_to_be_selected
scoreRatio_sum=1.04 log_scoreRatio_sum=-1.32 focal_scoreRatio_sum=0.13
AlnScore=508 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | /+ | ENSP00000328286 | - | q1 | q1 | 158.3 | 1 | 179435642 | 179436173 | 1 | 2 | 49% | 68% | 300 | 0.25 / 0.56 = 0.45 | between_species_paralog: NP_990233.1 | 3 |
p3 | --- | gapq | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gapq | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q2 | +/+ | ENSP00000324884 | HOXA3 | q2 | q2 | 104 | 1 | 180367479 | 180368063 | -1 | 1 | 43.1% | 40.8% | 585 | 0.51 / 0.87 = 0.59 | noComparaHits: IPF1 | 6 |
p6 | --- | gape | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000353151 | HOXA4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000222726 | HOXA5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000222728 | HOXA6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000242159 | HOXA7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000343619 | HOXA9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000283921 | HOXA10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 79 (region 5 for Xtro)
retrieve target region: getEnsemblProteins.pl -h Xenopus_tropicalis -l scaffold_80 -i 2006532:3000832 -f 75e4 some_geneID_to_be_selected
scoreRatio_sum=1.08 log_scoreRatio_sum=-1.28 focal_scoreRatio_sum=0.12
AlnScore=480 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Xenopus_tropicalis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | /+ | ENSP00000328286 | - | q1 | q1 | 141.3 | scaffold_80 | 2008042 | 2008546 | 1 | 2 | 57.1% | 60% | 345 | 0.25 / 0.61 = 0.41 | between_species_paralog: hmgb1 | 3 |
p3 | --- | gapq | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | q2 | +/+ | ENSP00000222718 | HOXA2 | q2 | q2 | 100 | scaffold_80 | 2926593 | 2926853 | -1 | 1 | 23.1% | 55.2% | 261 | 0.58 / 0.86 = 0.67 | noComparaHits: IPF1 | 7 |
p5 | --- | gape | ENSP00000324884 | HOXA3 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000353151 | HOXA4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000222726 | HOXA5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000222728 | HOXA6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000242159 | HOXA7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000343619 | HOXA9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000283921 | HOXA10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 80 (region 6 for Mmus)
retrieve target region: getEnsemblProteins.pl -h Mus_musculus -l 6 -i 81806533:83053687 -f 94e4 some_geneID_to_be_selected
scoreRatio_sum=0.48 log_scoreRatio_sum=-0.72 focal_scoreRatio_sum=0.05
AlnScore=475 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Mus_musculus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000328286 | - | q1 | q1 | 174 | 6 | 81806533 | 81807012 | -1 | 1 | 79.8% | 55% | 480 | 0.25 / 0.52 = 0.48 | noComparaHits: | noData |
p3 | --- | gape | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000353151 | HOXA4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000222726 | HOXA5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000222728 | HOXA6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000242159 | HOXA7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000343619 | HOXA9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000283921 | HOXA10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 81 (region 9 for Trub)
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_39 -i 578900:598598 -f 15e3 some_geneID_to_be_selected
scoreRatio_sum=1.69 log_scoreRatio_sum=-0.34 focal_scoreRatio_sum=1.21
AlnScore=467 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Takifugu_rubripes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000353151 | HOXA4 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000222726 | HOXA5 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000222728 | HOXA6 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q1 | +/+ | ENSP00000242159 | HOXA7 | q1 | q1 | 113 | scaffold_39 | 598401 | 598592 | 1 | 1 | 27.8% | 75% | 192 | 0.72 / 0.76 = 0.95 | noComparaHits: NEWSINFRUG00000162165 | 6 |
p11 | q2 | +/+ | ENSP00000343619 | HOXA9 | q2 | q2 | 135 | scaffold_39 | 584690 | 584911 | 1 | 1 | 27.2% | 83.8% | 222 | 0.56 / 0.76 = 0.74 | noComparaHits: Q4VN43_FUGRU | 6 |
p12 | --- | gape | ENSP00000283921 | HOXA10 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 82 (region 16 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l groupVI -i 16155941:16182587 -f 20e3 some_geneID_to_be_selected
scoreRatio_sum=1.69 log_scoreRatio_sum=-0.34 focal_scoreRatio_sum=1.22
AlnScore=466 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000353151 | HOXA4 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000222726 | HOXA5 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000222728 | HOXA6 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q1 | +/+ | ENSP00000242159 | HOXA7 | q1 | q1 | 109 | groupVI | 16182363 | 16182554 | 1 | 1 | 27.8% | 75% | 192 | 0.72 / 0.77 = 0.94 | noComparaHits: ENSGACG00000011907 | noData |
p11 | q2 | +/+ | ENSP00000343619 | HOXA9 | q2 | q2 | 139 | groupVI | 16162334 | 16162570 | 1 | 1 | 28.3% | 82.3% | 237 | 0.56 / 0.75 = 0.75 | noComparaHits: ENSGACG00000011902 | 7 |
p12 | --- | gape | ENSP00000283921 | HOXA10 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 83 (region 7 for Olat)
retrieve target region: getEnsemblProteins.pl -h Oryzias_latipes -l 15 -i 2960180:4374622 -f 11e5 some_geneID_to_be_selected
scoreRatio_sum=1.69 log_scoreRatio_sum=-0.34 focal_scoreRatio_sum=1.21
AlnScore=465 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Oryzias_latipes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000353151 | HOXA4 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000222726 | HOXA5 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000222728 | HOXA6 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q1 | +/+ | ENSP00000242159 | HOXA7 | q1 | q1 | 112 | 15 | 4350853 | 4351044 | -1 | 1 | 27.8% | 75% | 192 | 0.72 / 0.76 = 0.95 | noComparaHits: Q3V5Z3_ORYLA | noData |
p11 | q2 | +/+ | ENSP00000343619 | HOXA9 | q2 | q2 | 135 | 15 | 4374398 | 4374607 | -1 | 1 | 25.7% | 88.6% | 210 | 0.56 / 0.76 = 0.74 | noComparaHits: Q9PVR1_ORYLA | 6 |
p12 | --- | gape | ENSP00000283921 | HOXA10 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 84 (region 7 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l Un_random -i 20045126:20048409 -f 25e2 some_geneID_to_be_selected
scoreRatio_sum=1 log_scoreRatio_sum=0 focal_scoreRatio_sum=1
AlnScore=439 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000353151 | HOXA4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000222726 | HOXA5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000222728 | HOXA6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000242159 | HOXA7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q1 | +/+ | ENSP00000343619 | HOXA9 | q1 | q1 | 253 | Un_random | 20045126 | 20048409 | -1 | 2 | 100% | 49.8% | 783 | 0.56 / 0.56 = 1 | between_species_paralog: HXD9_CHICK | 2 |
p12 | --- | gape | ENSP00000283921 | HOXA10 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 85 (region 10 for Trub)
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_3809 -i 3209:5744 -f 19e2 some_geneID_to_be_selected
scoreRatio_sum=0.87 log_scoreRatio_sum=-0.13 focal_scoreRatio_sum=0.29
AlnScore=432 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Takifugu_rubripes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000353151 | HOXA4 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000222726 | HOXA5 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | q1 | +/+ | ENSP00000222728 | HOXA6 | q1 | q1 | 216.4 | scaffold_3809 | 3209 | 5717 | 1 | 2 | 99.1% | 49.5% | 798 | 0.49 / 0.56 = 0.87 | between_species_paralog: NEWSINFRUG00000159821 | 2 |
p10 | --- | gape | ENSP00000242159 | HOXA7 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000343619 | HOXA9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000283921 | HOXA10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 86 (region 4 for Mdom)
retrieve target region: getEnsemblProteins.pl -h Monodelphis_domestica -l Un -i 106218114:106219621 -f 11e2 some_geneID_to_be_selected
scoreRatio_sum=0.86 log_scoreRatio_sum=-0.14 focal_scoreRatio_sum=0.29
AlnScore=428 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Monodelphis_domestica
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000353151 | HOXA4 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000222726 | HOXA5 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | q1 | +/+ | ENSP00000222728 | HOXA6 | q1 | q1 | 214.1 | Un | 106218114 | 106219561 | 1 | 2 | 98.3% | 48.5% | 663 | 0.49 / 0.57 = 0.86 | between_species_paralog: HOXC6 | 3 |
p10 | --- | gape | ENSP00000242159 | HOXA7 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000343619 | HOXA9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000283921 | HOXA10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 87 (region 7 for Mmus)
retrieve target region: getEnsemblProteins.pl -h Mus_musculus -l 7 -i 131335100:132436298 -f 83e4 some_geneID_to_be_selected
scoreRatio_sum=0.44 log_scoreRatio_sum=-0.81 focal_scoreRatio_sum=0.04
AlnScore=428 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Mus_musculus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000328286 | - | q1 | q1 | 157 | 7 | 132321989 | 132322357 | 1 | 1 | 60.6% | 62.6% | 369 | 0.25 / 0.57 = 0.44 | noComparaHits: | noData |
p3 | --- | gape | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000353151 | HOXA4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000222726 | HOXA5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000222728 | HOXA6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000242159 | HOXA7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000343619 | HOXA9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000283921 | HOXA10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 88 (region 7 for Tnig)
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l 17 -i 7618605:9594639 -f 15e5 some_geneID_to_be_selected
scoreRatio_sum=1.64 log_scoreRatio_sum=-0.41 focal_scoreRatio_sum=1.17
AlnScore=426 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Tetraodon_nigroviridis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000353151 | HOXA4 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000222726 | HOXA5 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000222728 | HOXA6 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q1 | +/+ | ENSP00000242159 | HOXA7 | q1 | q1 | 110 | 17 | 9594427 | 9594618 | 1 | 1 | 27.8% | 73.4% | 192 | 0.72 / 0.77 = 0.94 | noComparaHits: HOXDb4
; GSTENG00018723001 |
7 |
p11 | q2 | +/+ | ENSP00000343619 | HOXA9 | q2 | q2 | 115 | 17 | 9576378 | 9576557 | 1 | 1 | 22.1% | 86.7% | 180 | 0.56 / 0.8 = 0.7 | noComparaHits: GSTENG00018723001
; HOXDb9 |
9 |
p12 | --- | gape | ENSP00000283921 | HOXA10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 89 (region 8 for Tnig)
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l 3 -i 679890:695564 -f 12e3 some_geneID_to_be_selected
scoreRatio_sum=1.53 log_scoreRatio_sum=-0.53 focal_scoreRatio_sum=1.13
AlnScore=415 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Tetraodon_nigroviridis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000353151 | HOXA4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000222726 | HOXA5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000222728 | HOXA6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000242159 | HOXA7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q1 | +/+ | ENSP00000343619 | HOXA9 | q2 | q1 | 124 | 3 | 679911 | 680132 | -1 | 1 | 27.2% | 74.3% | 222 | 0.56 / 0.78 = 0.72 | noComparaHits: GSTENG00031864001 | 7 |
p12 | q2 | +/+ | ENSP00000283921 | HOXA10 | q2 | q2 | 146 | 3 | 695232 | 695564 | -1 | 1 | 30.5% | 63.3% | 333 | 0.64 / 0.79 = 0.81 | ortholog_one2many: GSTENG00031863001 | 4 |
p13 | --- | gape | ENSP00000006015 | HOXA11 | q2 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 90 (region 9 for Drer)
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 24 -i 23627245:25218683 -f 12e5 some_geneID_to_be_selected
scoreRatio_sum=0.93 log_scoreRatio_sum=-0.06 focal_scoreRatio_sum=0.93
AlnScore=393 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000353151 | HOXA4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000222726 | HOXA5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000222728 | HOXA6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000242159 | HOXA7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q1 | +/+ | ENSP00000343619 | HOXA9 | q1 | q1 | 226.6 | 24 | 25215421 | 25218683 | 1 | 2 | 97.8% | 48% | 732 | 0.56 / 0.6 = 0.93 | between_species_paralog: hoxb9a | 4 |
p12 | --- | gape | ENSP00000283921 | HOXA10 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 91 (region 10 for Drer)
retrieve target region: getEnsemblProteins.pl -h Danio_rerio -l 6 -i 37029829:37032135 -f 17e2 some_geneID_to_be_selected
scoreRatio_sum=0.95 log_scoreRatio_sum=-0.04 focal_scoreRatio_sum=0.24
AlnScore=385 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Danio_rerio
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000353151 | HOXA4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000222726 | HOXA5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000222728 | HOXA6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000242159 | HOXA7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000343619 | HOXA9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gaps | ENSP00000283921 | HOXA10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gaps | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q1 | +/+ | ENSP00000222753 | HOXA13 | q1 | q1 | 247 | 6 | 37029829 | 37032135 | -1 | 2 | 58.5% | 59.1% | 642 | 0.58 / 0.61 = 0.95 | between_species_paralog: hoxc13b | 5 |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 92 (region 8 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l Un_random -i 4242278:4245456 -f 24e2 some_geneID_to_be_selected
scoreRatio_sum=0.94 log_scoreRatio_sum=-0.05 focal_scoreRatio_sum=0.24
AlnScore=375 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000353151 | HOXA4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000222726 | HOXA5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000222728 | HOXA6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000242159 | HOXA7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gaps | ENSP00000343619 | HOXA9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gaps | ENSP00000283921 | HOXA10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gaps | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | q1 | +/+ | ENSP00000222753 | HOXA13 | q1 | q1 | 240 | Un_random | 4242278 | 4245456 | 1 | 2 | 52.6% | 61.8% | 579 | 0.58 / 0.62 = 0.94 | between_species_paralog: HOXC13 | 3 |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 93 (region 8 for Mmus)
retrieve target region: getEnsemblProteins.pl -h Mus_musculus -l 19 -i 43331993:45287560 -f 15e5 some_geneID_to_be_selected
scoreRatio_sum=0.4 log_scoreRatio_sum=-0.91 focal_scoreRatio_sum=0.04
AlnScore=363 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Mus_musculus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000328286 | - | q1 | q1 | 133 | 19 | 43331993 | 43332544 | -1 | 1 | 88.9% | 45.7% | 552 | 0.25 / 0.63 = 0.4 | noComparaHits: ENSMUSG00000063282 | noData |
p3 | --- | gape | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000353151 | HOXA4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000222726 | HOXA5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000222728 | HOXA6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000242159 | HOXA7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000343619 | HOXA9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000283921 | HOXA10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 94 (region 9 for Mmus)
retrieve target region: getEnsemblProteins.pl -h Mus_musculus -l 11 -i 33102056:33338845 -f 18e4 some_geneID_to_be_selected
scoreRatio_sum=0.4 log_scoreRatio_sum=-0.91 focal_scoreRatio_sum=0.04
AlnScore=360 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Mus_musculus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000328286 | - | q1 | q1 | 132 | 11 | 33338437 | 33338721 | 1 | 1 | 48% | 60% | 285 | 0.25 / 0.63 = 0.4 | noComparaHits: Ranbp17 | noData |
p3 | --- | gape | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000353151 | HOXA4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000222726 | HOXA5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000222728 | HOXA6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000242159 | HOXA7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000343619 | HOXA9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000283921 | HOXA10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 95 (region 10 for Mmus)
retrieve target region: getEnsemblProteins.pl -h Mus_musculus -l 1 -i 121615088:122434732 -f 61e4 some_geneID_to_be_selected
scoreRatio_sum=0.38 log_scoreRatio_sum=-0.96 focal_scoreRatio_sum=0.04
AlnScore=338 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Mus_musculus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000328286 | - | q1 | q1 | 124 | 1 | 121615088 | 121615387 | 1 | 1 | 50.5% | 55% | 300 | 0.25 / 0.66 = 0.38 | noComparaHits: Ptpn4 | noData |
p3 | --- | gape | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000353151 | HOXA4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000222726 | HOXA5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000222728 | HOXA6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000242159 | HOXA7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000343619 | HOXA9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000283921 | HOXA10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 96 (region 17 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_9873 -i 1938:4245 -f 17e2 some_geneID_to_be_selected
scoreRatio_sum=0.95 log_scoreRatio_sum=-0.04 focal_scoreRatio_sum=0.19
AlnScore=330 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q1 | +/+ | ENSP00000353151 | HOXA4 | q1 | q1 | 225.9 | contig_9873 | 2001 | 4245 | -1 | 2 | 89.4% | 44.6% | 738 | 0.63 / 0.66 = 0.95 | noComparaHits: ENSGACG00000005628 | 1 |
p8 | --- | gape | ENSP00000222726 | HOXA5 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000222728 | HOXA6 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000242159 | HOXA7 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000343619 | HOXA9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000283921 | HOXA10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 97 (region 5 for Mdom)
retrieve target region: getEnsemblProteins.pl -h Monodelphis_domestica -l 8 -i 216826188:217471292 -f 48e4 some_geneID_to_be_selected
scoreRatio_sum=0.37 log_scoreRatio_sum=-0.98 focal_scoreRatio_sum=0.04
AlnScore=314 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Monodelphis_domestica
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | q1 | +/+ | ENSP00000328286 | - | q1 | q1 | 115 | 8 | 216826188 | 216826712 | 1 | 1 | 87.9% | 42.9% | 525 | 0.25 / 0.68 = 0.37 | noComparaHits: | noData |
p3 | --- | gape | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gape | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gape | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gape | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000353151 | HOXA4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000222726 | HOXA5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000222728 | HOXA6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000242159 | HOXA7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000343619 | HOXA9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000283921 | HOXA10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 98 (region 5 for Mmul)
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 1099214175475 -i 213:605 -f 29e1 some_geneID_to_be_selected
scoreRatio_sum=0.76 log_scoreRatio_sum=-0.26 focal_scoreRatio_sum=0.76
AlnScore=258 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Macaca_mulatta
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000353151 | HOXA4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000222726 | HOXA5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000222728 | HOXA6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000242159 | HOXA7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q1 | +/+ | ENSP00000343619 | HOXA9 | q1 | q1 | 149 | 1099214175475 | 327 | 563 | 1 | 1 | 29% | 86.1% | 237 | 0.56 / 0.74 = 0.76 | noComparaHits: | 4 |
p12 | --- | gape | ENSP00000283921 | HOXA10 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 99 (region 11 for Trub)
retrieve target region: getEnsemblProteins.pl -h Takifugu_rubripes -l scaffold_4108 -i 5963:6196 -f 18e1 some_geneID_to_be_selected
scoreRatio_sum=0.75 log_scoreRatio_sum=-0.28 focal_scoreRatio_sum=0.75
AlnScore=250 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Takifugu_rubripes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000353151 | HOXA4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000222726 | HOXA5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000222728 | HOXA6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000242159 | HOXA7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q1 | +/+ | ENSP00000343619 | HOXA9 | q1 | q1 | 144 | scaffold_4108 | 5963 | 6196 | 1 | 1 | 28.7% | 85.9% | 234 | 0.56 / 0.75 = 0.75 | noComparaHits: NEWSINFRUG00000159744 | 5 |
p12 | --- | gape | ENSP00000283921 | HOXA10 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 100 (region 9 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l Un_random -i 376717:2035555 -f 12e5 some_geneID_to_be_selected
scoreRatio_sum=0.84 log_scoreRatio_sum=-0.16 focal_scoreRatio_sum=0.17
AlnScore=242 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | q1 | +/+ | ENSP00000353151 | HOXA4 | q1 | q1 | 166 | Un_random | 376726 | 377022 | -1 | 1 | 30.3% | 77.8% | 297 | 0.63 / 0.75 = 0.84 | between_species_paralog: HOXB4 | 3 |
p8 | --- | gape | ENSP00000222726 | HOXA5 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000222728 | HOXA6 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000242159 | HOXA7 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000343619 | HOXA9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000283921 | HOXA10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 101 (region 18 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_4905 -i 15859:22506 -f 50e2 some_geneID_to_be_selected
scoreRatio_sum=0.75 log_scoreRatio_sum=-0.28 focal_scoreRatio_sum=0.75
AlnScore=241 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000353151 | HOXA4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000222726 | HOXA5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000222728 | HOXA6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000242159 | HOXA7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q1 | +/+ | ENSP00000343619 | HOXA9 | q1 | q1 | 139 | contig_4905 | 15877 | 16113 | -1 | 1 | 28.3% | 82.3% | 237 | 0.56 / 0.75 = 0.75 | noComparaHits: ENSGACG00000011902 | 7 |
p12 | --- | gape | ENSP00000283921 | HOXA10 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 102 (region 9 for Tnig)
retrieve target region: getEnsemblProteins.pl -h Tetraodon_nigroviridis -l Un_random -i 80676474:80677664 -f 89e1 some_geneID_to_be_selected
scoreRatio_sum=0.67 log_scoreRatio_sum=-0.39 focal_scoreRatio_sum=0.1
AlnScore=233 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Tetraodon_nigroviridis
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q1 | +/+ | ENSP00000324884 | HOXA3 | q1 | q1 | 197 | Un_random | 80676530 | 80677603 | -1 | 1 | 76.3% | 39.3% | 1074 | 0.51 / 0.76 = 0.67 | between_species_paralog: GSTENG00003053001 | 4 |
p6 | --- | gape | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000353151 | HOXA4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000222726 | HOXA5 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000222728 | HOXA6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000242159 | HOXA7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000343619 | HOXA9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000283921 | HOXA10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 103 (region 10 for Ggal)
retrieve target region: getEnsemblProteins.pl -h Gallus_gallus -l Un_random -i 13865410:13865619 -f 16e1 some_geneID_to_be_selected
scoreRatio_sum=0.64 log_scoreRatio_sum=-0.44 focal_scoreRatio_sum=0.21
AlnScore=230 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Gallus_gallus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000353151 | HOXA4 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000222726 | HOXA5 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | q1 | +/+ | ENSP00000222728 | HOXA6 | q1 | q1 | 115 | Un_random | 13865410 | 13865607 | 1 | 1 | 28.3% | 81.8% | 198 | 0.49 / 0.77 = 0.64 | noComparaHits: | 6 |
p10 | --- | gape | ENSP00000242159 | HOXA7 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000343619 | HOXA9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000283921 | HOXA10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 104 (region 19 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_4903 -i 10680:10931 -f 19e1 some_geneID_to_be_selected
scoreRatio_sum=0.94 log_scoreRatio_sum=-0.05 focal_scoreRatio_sum=0.47
AlnScore=225 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000353151 | HOXA4 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000222726 | HOXA5 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000222728 | HOXA6 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | q1 | +/+ | ENSP00000242159 | HOXA7 | q1 | q1 | 109 | contig_4903 | 10713 | 10904 | -1 | 1 | 27.8% | 75% | 192 | 0.72 / 0.77 = 0.94 | noComparaHits: | noData |
p11 | --- | gape | ENSP00000343619 | HOXA9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000283921 | HOXA10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 105 (region 20 for Gacu)
retrieve target region: getEnsemblProteins.pl -h Gasterosteus_aculeatus -l contig_2644 -i 2418:2735 -f 24e1 some_geneID_to_be_selected
scoreRatio_sum=0.72 log_scoreRatio_sum=-0.32 focal_scoreRatio_sum=0.72
AlnScore=210 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Gasterosteus_aculeatus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | --- | gaps | ENSP00000324884 | HOXA3 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p6 | --- | gaps | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gaps | ENSP00000353151 | HOXA4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gaps | ENSP00000222726 | HOXA5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gaps | ENSP00000222728 | HOXA6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gaps | ENSP00000242159 | HOXA7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | q1 | +/+ | ENSP00000343619 | HOXA9 | q1 | q1 | 121 | contig_2644 | 2457 | 2663 | -1 | 1 | 25.4% | 76.8% | 207 | 0.56 / 0.78 = 0.72 | noComparaHits: | 8 |
p12 | --- | gape | ENSP00000283921 | HOXA10 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | q1 | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 106 (region 6 for Btau)
retrieve target region: getEnsemblProteins.pl -h Bos_taurus -l 12 -i 17059544:17152439 -f 70e3 some_geneID_to_be_selected
scoreRatio_sum=0.59 log_scoreRatio_sum=-0.52 focal_scoreRatio_sum=0.08
AlnScore=131 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Bos_taurus
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q1 | +/+ | ENSP00000324884 | HOXA3 | q1 | q1 | 111 | 12 | 17151711 | 17152439 | 1 | 1 | 52.6% | 34.7% | 729 | 0.51 / 0.86 = 0.59 | noComparaHits: IPF1 | 4 |
p6 | --- | gape | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000353151 | HOXA4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000222726 | HOXA5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000222728 | HOXA6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000242159 | HOXA7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000343619 | HOXA9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000283921 | HOXA10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 107 (region 5 for Cfam)
retrieve target region: getEnsemblProteins.pl -h Canis_familiaris -l 25 -i 14692875:14841952 -f 11e4 some_geneID_to_be_selected
scoreRatio_sum=0.59 log_scoreRatio_sum=-0.52 focal_scoreRatio_sum=0.08
AlnScore=126 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Canis_familiaris
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q1 | +/+ | ENSP00000324884 | HOXA3 | q1 | q1 | 107 | 25 | 14729989 | 14730435 | -1 | 1 | 33.9% | 43.7% | 447 | 0.51 / 0.87 = 0.59 | noComparaHits: 493994 | 4 |
p6 | --- | gape | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000353151 | HOXA4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000222726 | HOXA5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000222728 | HOXA6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000242159 | HOXA7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000343619 | HOXA9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000283921 | HOXA10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 108 (region 6 for Mdom)
retrieve target region: getEnsemblProteins.pl -h Monodelphis_domestica -l 4 -i 288288780:288480763 -f 14e4 some_geneID_to_be_selected
scoreRatio_sum=0.59 log_scoreRatio_sum=-0.52 focal_scoreRatio_sum=0.08
AlnScore=126 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Monodelphis_domestica
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q1 | +/+ | ENSP00000324884 | HOXA3 | q1 | q1 | 107 | 4 | 288439898 | 288440332 | 1 | 1 | 36.8% | 42.7% | 435 | 0.51 / 0.87 = 0.59 | noComparaHits: IPF1 | 5 |
p6 | --- | gape | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000353151 | HOXA4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000222726 | HOXA5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000222728 | HOXA6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000242159 | HOXA7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000343619 | HOXA9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000283921 | HOXA10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 109 (region 5 for Hsap)
retrieve target region: getEnsemblProteins.pl -h Homo_sapiens -l 13 -i 27265651:27437285 -f 13e4 some_geneID_to_be_selected
scoreRatio_sum=0.59 log_scoreRatio_sum=-0.52 focal_scoreRatio_sum=0.08
AlnScore=123 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Homo_sapiens
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q1 | +/+ | ENSP00000324884 | HOXA3 | q1 | q1 | 104 | 13 | 27396338 | 27396925 | 1 | 1 | 41.1% | 38.5% | 588 | 0.51 / 0.87 = 0.59 | noComparaHits: IPF1 | 6 |
p6 | --- | gape | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000353151 | HOXA4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000222726 | HOXA5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000222728 | HOXA6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000242159 | HOXA7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000343619 | HOXA9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000283921 | HOXA10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 110 (region 6 for Mmul)
retrieve target region: getEnsemblProteins.pl -h Macaca_mulatta -l 17 -i 7468487:7621326 -f 11e4 some_geneID_to_be_selected
scoreRatio_sum=0.59 log_scoreRatio_sum=-0.52 focal_scoreRatio_sum=0.08
AlnScore=120 (based on relative scores)
AlnType: reversed (decreasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Macaca_mulatta
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q1 | +/+ | ENSP00000324884 | HOXA3 | q1 | q1 | 102 | 17 | 7585848 | 7586147 | 1 | 1 | 19.4% | 58% | 300 | 0.51 / 0.87 = 0.59 | noComparaHits: IPF1 | 6 |
p6 | --- | gape | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000353151 | HOXA4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000222726 | HOXA5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000222728 | HOXA6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000242159 | HOXA7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000343619 | HOXA9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000283921 | HOXA10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
region 111 (region 8 for Olat)
retrieve target region: getEnsemblProteins.pl -h Oryzias_latipes -l 20 -i 15674975:15675364 -f 29e1 some_geneID_to_be_selected
scoreRatio_sum=0.58 log_scoreRatio_sum=-0.53 focal_scoreRatio_sum=0.08
AlnScore=118 (based on relative scores)
AlnType: normal (increasing chromosome positions)
QueryProtein(s)=ENSP00000343619 (contained in p11)
TargetGenome=Oryzias_latipes
ref-loci | target-loci | aln | protID | geneName | optQloci | target-loci | score | chr | startPos | endPos | ori | hits | queryCov | meanIdentity | hitsLength | intra_inter | compara | globalRank |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
p1 | --- | gaps | ENSP00000005587 | SKAP2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p2 | --- | gaps | ENSP00000328286 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p3 | --- | gaps | ENSP00000343246 | HOXA1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p4 | --- | gaps | ENSP00000222718 | HOXA2 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p5 | q1 | +/+ | ENSP00000324884 | HOXA3 | q1 | q1 | 100 | 20 | 15674996 | 15675325 | -1 | 1 | 24.4% | 50.4% | 330 | 0.51 / 0.88 = 0.58 | noComparaHits: Q9PVQ3_ORYLA | 9 |
p6 | --- | gape | ENSP00000297027 | Q96MZ3_HUMAN | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p7 | --- | gape | ENSP00000353151 | HOXA4 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p8 | --- | gape | ENSP00000222726 | HOXA5 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p9 | --- | gape | ENSP00000222728 | HOXA6 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p10 | --- | gape | ENSP00000242159 | HOXA7 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p11 | --- | gape | ENSP00000343619 | HOXA9 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p12 | --- | gape | ENSP00000283921 | HOXA10 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p13 | --- | gape | ENSP00000006015 | HOXA11 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p14 | --- | gape | ENSP00000222753 | HOXA13 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p15 | --- | gape | ENSP00000222761 | EVX1 | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p16 | --- | gape | ENSP00000322111 | - | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |
p17 | --- | gape | ENSP00000265395 | HIBADH | noMatch | --- | - | - | - | - | - | - | - | - | - | - | - | - |