# alignment results for HOXD9_ENSG00000128709_5e5.protein.info
# Columns are as follows
#region	alnScore	queryFile	targetGenome	targetChr	pNumber	qNumber	queryID	protID	geneName	optQloci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
##########################
1	4326	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	9	p1	q1	ENSP00000272748	ENSP00000272748	KIAA1715	q1	358.12	9	2011126	2074682	1	9	73.1%	53.1%	1005	0.9 / 0.57 = 1.58	ortholog_one2many:ENSDARG00000063646_(ENSDARP00000087619 [lnp])	1
1	4326	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	9	p2	q2	ENSP00000312385	ENSP00000312385	EVX2	q2	500.26	9	1987331	1989553	1	3	85.7%	68.8%	1137	0.6 / 0.34 = 1.76	ortholog_one2one:ENSDARG00000059255_(ENSDARP00000076765 [evx2])	1
1	4326	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	9	p3	q3	ENSP00000249505	ENSP00000249505	HOXD13	q3	165.01	9	1971944	1974445	-1	2	65.1%	43.2%	657	0.59 / 0.72 = 0.82	NOMATCH:ENSDARG00000059256(ENSDARP00000076768 [hoxd13a]);	6
1	4326	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	9	p4	q4	ENSP00000303578	ENSP00000303578	HOXD12	q4	109.61	9	1966604	1966846	-1	1	29.1%	70.4%	243	0.65 / 0.78 = 0.83	ortholog_one2one:ENSDARG00000059263_(ENSDARP00000076775 [hoxd12a])	3
1	4326	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	9	p5	q5	ENSP00000249504	ENSP00000249504	HOXD11	q5	268.63	9	1960571	1962261	-1	3	71.3%	60.4%	705	0.49 / 0.49 = 1	NOMATCH:ENSDARG00000059267(ENSDARP00000076780,ENSDARP00000093699,ENSDARP00000075052 [hoxd11a]);	1
1	4326	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	9	p6	q6	ENSP00000249501	ENSP00000249501	HOXD10	q6	440.28	9	1952491	1954201	-1	2	99.7%	69.7%	996	0.56 / 0.3 = 1.87	ortholog_one2one:ENSDARG00000057859_(ENSDARP00000075055 [hoxd10a])	1
1	4326	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	9	p7	q7	ENSP00000249499	ENSP00000249499	HOXD9	q7	265.46	9	1948809	1949904	-1	3	68.1%	62.7%	657	0.61 / 0.57 = 1.07	NOMATCH:ENSDARG00000059274(ENSDARP00000076790 [hoxd9a]);	1
1	4326	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	9	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
1	4326	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	9	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
1	4326	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	9	p10	q8	ENSP00000302548	ENSP00000302548	HOXD4	q8	280.12	9	1933885	1934984	-1	2	100%	60.9%	711	0.5 / 0.44 = 1.14	between_species_paralog:ENSDARG00000059276_(ENSDARP00000076791 [hoxd4a])	1
1	4326	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	9	p11	q9	ENSP00000249440	ENSP00000249440	HOXD3	q9	488.51	9	1921957	1923316	-1	2	90.5%	66.8%	1152	0.55 / 0.41 = 1.34	ortholog_one2one:ENSDARG00000059280_(ENSDARP00000076793)	1
1	4326	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	9	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
1	4326	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	9	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
1	4326	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	9	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
2	3017	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
2	3017	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
2	3017	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p3	q1	ENSP00000249505	ENSP00000249505	HOXD13	q1	254.07	23	33701670	33704197	1	2	79.1%	53.9%	750	0.59 / 0.57 = 1.04	NOMATCH:ENSDARG00000070353(ENSDARP00000093923 [hoxc13a],ENSDARP00000093922);	1
2	3017	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p4	q2	ENSP00000303578	ENSP00000303578	HOXD12	q2	162.54	23	33711191	33712771	1	2	50%	60.8%	426	0.65 / 0.68 = 0.96	NOMATCH:ENSDARG00000070352(ENSDARP00000093921 [A2BE68_DANRE]);	1
2	3017	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p5	q3	ENSP00000249504	ENSP00000249504	HOXD11	q3	233.43	23	33722558	33724783	1	3	64.5%	58.2%	636	0.49 / 0.55 = 0.89	NOMATCH:ENSDARG00000070351(ENSDARP00000093920 [hoxc11a]);	4
2	3017	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p6	q4	ENSP00000249501	ENSP00000249501	HOXD10	q4	228.72	23	33731209	33733940	1	2	98.2%	46.2%	1005	0.56 / 0.64 = 0.88	NOMATCH:ENSDARG00000070350(ENSDARP00000053294 [hoxc10a]);	3
2	3017	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p7	q5	ENSP00000249499	ENSP00000249499	HOXD9	q5	241.75	23	33742961	33744781	1	2	75.1%	55%	744	0.61 / 0.61 = 1	NOMATCH:ENSDARG00000070348(ENSDARP00000093914 [hoxc9a]);	2
2	3017	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
2	3017	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p9	q6	ENSP00000315949	ENSP00000315949	HOXD8	q6	229.78	23	33749264	33751014	1	2	56.2%	73.2%	483	0.55 / 0.54 = 1.02	between_species_paralog:ENSDARG00000070346_(ENSDARP00000093913 [hoxc8a])	1
2	3017	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p10	q9	ENSP00000302548	ENSP00000302548	HOXD4	q9	245.62	23	33778655	33779888	1	2	92.5%	57.6%	714	0.5 / 0.51 = 0.98	between_species_paralog:ENSDARG00000070338_(ENSDARP00000093906 [hoxc4a])	3
2	3017	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	q9
2	3017	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p12	q10	ENSP00000328598	ENSP00000328598	HOXD1	q10	100.81	23	33830823	33831014	1	1	19.5%	84.4%	192	0.69 / 0.82 = 0.84	NOMATCH:ENSDARG00000070337(ENSDARP00000093905 [hoxc1a]);	4
2	3017	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
2	3017	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
3	3013	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
3	3013	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
3	3013	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p3	q1	ENSP00000249505	ENSP00000249505	HOXD13	q1	254.07	23	35287169	35289696	-1	2	79.1%	53.9%	750	0.59 / 0.57 = 1.04	NOMATCH:ENSDARG00000070288(ENSDARP00000093788 [hoxc13a],ENSDARP00000093786);	1
3	3013	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p4	q2	ENSP00000303578	ENSP00000303578	HOXD12	q2	162.54	23	35277627	35279207	-1	2	50%	60.8%	426	0.65 / 0.68 = 0.96	NOMATCH:ENSDARG00000070291(ENSDARP00000093792 [A2BE68_DANRE]);	1
3	3013	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p5	q3	ENSP00000249504	ENSP00000249504	HOXD11	q3	233.43	23	35265651	35267876	-1	3	64.5%	58.2%	636	0.49 / 0.55 = 0.89	NOMATCH:ENSDARG00000070295(ENSDARP00000093797 [hoxc11a]);	4
3	3013	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p6	q4	ENSP00000249501	ENSP00000249501	HOXD10	q4	228.72	23	35256494	35259225	-1	2	98.2%	46.2%	1005	0.56 / 0.64 = 0.88	NOMATCH:ENSDARG00000070298(ENSDARP00000093800 [hoxc10a]);	3
3	3013	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p7	q5	ENSP00000249499	ENSP00000249499	HOXD9	q5	241.75	23	35245651	35247471	-1	2	75.1%	55%	744	0.61 / 0.61 = 1	NOMATCH:ENSDARG00000070300(ENSDARP00000093802 [hoxc9a]);	2
3	3013	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
3	3013	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p9	q6	ENSP00000315949	ENSP00000315949	HOXD8	q6	229.78	23	35239418	35241168	-1	2	56.2%	73.2%	483	0.55 / 0.54 = 1.02	between_species_paralog:ENSDARG00000070302_(ENSDARP00000093804 [hoxc8a])	1
3	3013	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p10	q9	ENSP00000302548	ENSP00000302548	HOXD4	q9	245.62	23	35210595	35211828	-1	2	92.5%	57.6%	714	0.5 / 0.51 = 0.98	between_species_paralog:ENSDARG00000070308_(ENSDARP00000085719 [hoxc4a])	3
3	3013	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
3	3013	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p12	q10	ENSP00000328598	ENSP00000328598	HOXD1	q10,q11	100.81	23	35159263	35159454	-1	1	19.5%	84.4%	192	0.69 / 0.82 = 0.84	NOMATCH:ENSDARG00000070309(ENSDARP00000093824 [hoxc1a]);	4
3	3013	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
3	3013	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	23	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
4	2799	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	19	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
4	2799	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	19	p2	q1	ENSP00000312385	ENSP00000312385	EVX2	q1	258.64	19	10480293	10481282	-1	2	48.5%	61.6%	669	0.6 / 0.65 = 0.92	between_species_paralog:ENSDARG00000005628_(ENSDARP00000052635 [evx1])	2
4	2799	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	19	p3	q2	ENSP00000249505	ENSP00000249505	HOXD13	q2	236.11	19	10490898	10491770	1	2	76.1%	50.3%	825	0.59 / 0.6 = 0.98	between_species_paralog:ENSDARG00000007609_(ENSDARP00000003928 [hoxa13a])	3
4	2799	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	19	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
4	2799	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	19	p5	q3	ENSP00000249504	ENSP00000249504	HOXD11	q3	250.32	19	10498419	10499980	1	3	66.9%	58.8%	717	0.49 / 0.52 = 0.94	NOMATCH:ENSDARG00000009045(ENSDARP00000006348 [hoxa11a]);	3
4	2799	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	19	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	q4
4	2799	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	19	p7	q4	ENSP00000249499	ENSP00000249499	HOXD9	q4	172.75	19	10511297	10512327	1	2	57%	51%	543	0.61 / 0.72 = 0.85	NOMATCH:ENSDARG00000009461(ENSDARP00000009894 [hoxa9a]);	4
4	2799	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	19	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
4	2799	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	19	p9	q5	ENSP00000315949	ENSP00000315949	HOXD8	q5	134.15	19	10520701	10521954	1	3	32.1%	62.4%	300	0.55 / 0.73 = 0.75	NOMATCH:ENSDARG00000001784(ENSDARP00000023754 [hoxa5a]);	4
4	2799	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	19	p10	q6	ENSP00000302548	ENSP00000302548	HOXD4	q6	215.34	19	10528752	10529879	1	2	89.8%	53.4%	681	0.5 / 0.57 = 0.88	between_species_paralog:ENSDARG00000057724_(ENSDARP00000074915 [hoxa4a])	4
4	2799	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	19	p11	q7	ENSP00000249440	ENSP00000249440	HOXD3	q7	310.04	19	10538878	10540642	1	2	90.5%	46.9%	1209	0.55 / 0.63 = 0.87	between_species_paralog:ENSDARG00000036231_(ENSDARP00000052632 [hoxa3a])	3
4	2799	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	19	p12	q8	ENSP00000328598	ENSP00000328598	HOXD1	q8	152.34	19	10547332	10548486	1	2	98.8%	37.3%	966	0.69 / 0.73 = 0.95	NOMATCH:ENSDARG00000057721(ENSDARP00000074910 [hoxa1a],ENSDARP00000074905 [hoxa1a]);	1
4	2799	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	19	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
4	2799	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	19	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
5	2660	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
5	2660	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p2	q1	ENSP00000312385	ENSP00000312385	EVX2	q1	157.61	3	22998306	22999104	-1	2	34%	52.1%	450	0.6 / 0.79 = 0.76	NOMATCH:ENSDARG00000056012(ENSDARP00000072887 [eve1],ENSDARP00000094573);	3
5	2660	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p3	q2	ENSP00000249505	ENSP00000249505	HOXD13	q2	247.73	3	23010325	23011473	1	2	75.8%	52.9%	729	0.59 / 0.58 = 1.02	between_species_paralog:ENSDARG00000056015_(ENSDARP00000072890 [hoxb13a])	2
5	2660	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
5	2660	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
5	2660	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p6	q3	ENSP00000249501	ENSP00000249501	HOXD10	q3	127.91	3	23026681	23026947	1	1	26.2%	71.9%	267	0.56 / 0.79 = 0.71	NOMATCH:ENSDARG00000011579(ENSDARP00000016856 [hoxb10a]);	4
5	2660	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p7	q4	ENSP00000249499	ENSP00000249499	HOXD9	q4	133.9	3	23036335	23036565	1	1	22.8%	85.9%	231	0.61 / 0.78 = 0.78	NOMATCH:ENSDARG00000056023(ENSDARP00000007852 [hoxb9a],ENSDARP00000022169 [hoxb9a],ENSDARP00000053292);	5
5	2660	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
5	2660	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p9	q5	ENSP00000315949	ENSP00000315949	HOXD8	q5	226.96	3	23044226	23045536	1	2	69%	61.6%	561	0.55 / 0.54 = 1.02	between_species_paralog:ENSDARG00000056027_(ENSDARP00000046637 [hoxb8a])	2
5	2660	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p10	q9	ENSP00000302548	ENSP00000302548	HOXD4	q9	252.3	3	23077620	23079267	1	2	93.7%	56.3%	714	0.5 / 0.5 = 1	between_species_paralog:ENSDARG00000013533_(ENSDARP00000008458 [hoxb4a])	2
5	2660	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p11	q10	ENSP00000249440	ENSP00000249440	HOXD3	q10	392.76	3	23101788	23103710	1	2	96.3%	54.8%	1248	0.55 / 0.53 = 1.04	between_species_paralog:ENSDARG00000029263_(ENSDARP00000072928 [hoxb3a])	2
5	2660	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p12	q12	ENSP00000328598	ENSP00000328598	HOXD1	q12	147.76	3	23124773	23126284	1	2	77.4%	42.1%	783	0.69 / 0.74 = 0.93	NOMATCH:ENSDARG00000008174(ENSDARP00000014577 [hoxb1a]);	2
5	2660	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
5	2660	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	3	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
6	1811	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	16	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
6	1811	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	16	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
6	1811	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	16	p3	q1	ENSP00000249505	ENSP00000249505	HOXD13	q1	212.52	16	15984775	15985755	-1	2	60.9%	59.1%	564	0.59 / 0.64 = 0.92	between_species_paralog:ENSDARG00000036254_(ENSDARP00000052661 [hoxa13b])	5
6	1811	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	16	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
6	1811	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	16	p5	q2	ENSP00000249504	ENSP00000249504	HOXD11	q2	259.83	16	15975496	15977088	-1	3	87.3%	52%	861	0.49 / 0.5 = 0.98	NOMATCH:ENSDARG00000007009(ENSDARP00000005174 [hoxa11b]);	2
6	1811	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	16	p6	q3	ENSP00000249501	ENSP00000249501	HOXD10	q3	266.03	16	15969590	15971739	-1	2	93.8%	50.5%	951	0.56 / 0.58 = 0.97	NOMATCH:ENSDARG00000031337(ENSDARP00000046765 [hoxa10b]);	2
6	1811	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	16	p7	q4	ENSP00000249499	ENSP00000249499	HOXD9	q4	195.28	16	15965008	15966531	-1	2	66.1%	52.4%	636	0.61 / 0.68 = 0.9	NOMATCH:ENSDARG00000056819(ENSDARP00000073839,ENSDARP00000094425 [hoxa9b]);	3
6	1811	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	16	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
6	1811	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	16	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
6	1811	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	16	p10	q5	ENSP00000302548	ENSP00000302548	HOXD4	q5	123.61	16	15953680	15954666	-1	3	49.4%	50%	378	0.5 / 0.75 = 0.67	NOMATCH:ENSDARG00000023031(ENSDARP00000023072 [hoxa2b]);	10
6	1811	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	16	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	q5
6	1811	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	16	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
6	1811	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	16	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
6	1811	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	16	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
7	1303	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	11	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
7	1303	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	11	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
7	1303	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	11	p3	q1	ENSP00000249505	ENSP00000249505	HOXD13	q1	228.37	11	547432	549807	1	2	75.8%	50.6%	741	0.59 / 0.61 = 0.97	NOMATCH:ENSDARG00000043871(ENSDARP00000064412 [hoxc13b]);	4
7	1303	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	11	p4	q2	ENSP00000303578	ENSP00000303578	HOXD12	q2	147.76	11	559045	560166	1	2	45.7%	58%	390	0.65 / 0.71 = 0.92	NOMATCH:ENSDARG00000046043(ENSDARP00000067695 [hoxc12b]);	2
7	1303	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	11	p5	q3	ENSP00000249504	ENSP00000249504	HOXD11	q3	214.77	11	566839	568425	1	3	84.3%	46.2%	840	0.49 / 0.59 = 0.83	NOMATCH:ENSDARG00000059401(ENSDARP00000076949 [hoxc11b],ENSDARP00000067694 [hoxc11b]);	5
7	1303	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	11	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	noMatch
7	1303	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	11	p7	---	ENSP00000249499	ENSP00000249499	HOXD9	noMatch
7	1303	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	11	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
7	1303	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	11	p9	---	ENSP00000315949	ENSP00000315949	HOXD8	noMatch
7	1303	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	11	p10	q4	ENSP00000302548	ENSP00000302548	HOXD4	q4	120.3	11	590093	590867	1	2	45.1%	53%	333	0.5 / 0.76 = 0.66	NOMATCH:ENSDARG00000046045(ENSDARP00000067697 [hoxc6b]);	noData
7	1303	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	11	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
7	1303	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	11	p12	---	ENSP00000328598	ENSP00000328598	HOXD1	noMatch
7	1303	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	11	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
7	1303	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	11	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#
8	871	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	12	p1	---	ENSP00000272748	ENSP00000272748	KIAA1715	noMatch
8	871	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	12	p2	---	ENSP00000312385	ENSP00000312385	EVX2	noMatch
8	871	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	12	p3	---	ENSP00000249505	ENSP00000249505	HOXD13	noMatch
8	871	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	12	p4	---	ENSP00000303578	ENSP00000303578	HOXD12	noMatch
8	871	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	12	p5	---	ENSP00000249504	ENSP00000249504	HOXD11	noMatch
8	871	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	12	p6	---	ENSP00000249501	ENSP00000249501	HOXD10	noMatch
8	871	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	12	p7	---	ENSP00000249499	ENSP00000249499	HOXD9	noMatch
8	871	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	12	p8	---	ENSP00000316098	ENSP00000316098	Q8NAT4_HUMAN	noMatch
8	871	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	12	p9	q1	ENSP00000315949	ENSP00000315949	HOXD8	q1	179.09	12	26478746	26480927	-1	2	59%	58%	486	0.55 / 0.64 = 0.86	between_species_paralog:ENSDARG00000054025_(ENSDARP00000070632 [hoxb8b])	3
8	871	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	12	p10	q3	ENSP00000302548	ENSP00000302548	HOXD4	q3	140.01	12	26467628	26468453	-1	2	48.2%	57.6%	375	0.5 / 0.72 = 0.69	NOMATCH:ENSDARG00000054030(ENSDARP00000070639 [hoxb5b]);	6
8	871	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	12	p11	---	ENSP00000249440	ENSP00000249440	HOXD3	noMatch
8	871	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	12	p12	q4	ENSP00000328598	ENSP00000328598	HOXD1	q4	144.24	12	26456241	26456932	-1	2	58.5%	47.1%	609	0.69 / 0.75 = 0.92	NOMATCH:ENSDARG00000054033(ENSDARP00000070641 [hoxb1b]);	3
8	871	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	12	p13	---	ENSP00000346209	ENSP00000346209	-	noMatch
8	871	HOXD9_ENSG00000128709_5e5.protein.info	Danio_rerio	12	p14	---	ENSP00000249442	ENSP00000249442	MTX2	noMatch
#
##################################################################
#