# alignment results for HOXC9_ENSG00000180806_3e5.protein.info
# Columns are as follows
#region	alnScore	queryFile	targetGenome	targetChr	pNumber	qNumber	queryID	protID	geneName	optQloci	score	chr	startPos	endPos	ori	hits	queryCov	meanIdentity	hitsLength	intra_inter	compara	globalRank
##########################
1	8687	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	23	p1	q1	ENSP00000262059	ENSP00000262059	CALCOCO1	q1	417.53	23	33632270	33649214	-1	11	69.5%	44%	1563	0.89 / 0.68 = 1.31	ortholog_one2many:ENSDARG00000036695_(ENSDARP00000093924 [calcoco1])	1
1	8687	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	23	p2	q2	ENSP00000243056	ENSP00000243056	HOXC13	q2	467.87	23	33701520	33704218	1	3	91.8%	77.3%	915	0.53 / 0.21 = 2.52	ortholog_one2many:ENSDARG00000070353_(ENSDARP00000093923 [hoxc13a])	1
1	8687	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	23	p3	q3	ENSP00000243103	ENSP00000243103	HOXC12	q3	340.66	23	33711191	33712771	1	2	100%	65.2%	834	0.49 / 0.08 = 6.13	ortholog_one2many:ENSDARG00000070352_(ENSDARP00000093921 [A2BE68_DANRE])	1
1	8687	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	23	p4	q4	ENSP00000243082	ENSP00000243082	HOXC11	q4	385.72	23	33722501	33724786	1	2	100%	64.2%	966	0.34 / 0.12 = 2.83	ortholog_one2many:ENSDARG00000070351_(ENSDARP00000093920 [hoxc11a])	1
1	8687	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	23	p5	q5	ENSP00000307321	ENSP00000307321	HOXC10	q5	246.32	23	33731209	33733955	1	2	94.4%	45.9%	1005	0.57 / 0.62 = 0.92	NOMATCH:ENSDARG00000070350(ENSDARP00000053294 [hoxc10a]);	2
1	8687	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	23	p6	q6	ENSP00000302836	ENSP00000302836	HOXC9	q6	373.4	23	33742961	33744799	1	2	99.6%	73.2%	780	0.52 / 0.26 = 2	ortholog_one2many:ENSDARG00000070348_(ENSDARP00000093914 [hoxc9a])	1
1	8687	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	23	p7	q7	ENSP00000040584	ENSP00000040584	HOXC8	q7	403.32	23	33749039	33751053	1	2	100%	82%	750	0.33 / 0.06 = 5.5	ortholog_one2many:ENSDARG00000070346_(ENSDARP00000093913 [hoxc8a])	1
1	8687	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	23	p8	q8	ENSP00000243108	ENSP00000243108	HOXC6	q8	339.25	23	33763064	33764351	1	2	98.3%	73.1%	696	0.55 / 0.24 = 2.29	ortholog_one2many:ENSDARG00000070343_(ENSDARP00000093910 [hoxc6a])	1
1	8687	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	23	p9	q9	ENSP00000309336	ENSP00000309336	HOXC5	q9	209.71	23	33766330	33767846	1	2	100%	53.6%	699	0.62 / 0.51 = 1.22	NOMATCH:ENSDARG00000070340(ENSDARP00000093908 [hoxc5a]);	1
1	8687	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	23	p10	q10	ENSP00000305973	ENSP00000305973	HOXC4	q10	351.92	23	33778655	33779978	1	2	100%	70.1%	804	0.51 / 0.32 = 1.59	ortholog_one2many:ENSDARG00000070338_(ENSDARP00000093906 [hoxc4a])	1
1	8687	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	23	p11	---	ENSP00000338606	ENSP00000338606	SMUG1	noMatch
1	8687	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	23	p12	q12	ENSP00000209875	ENSP00000209875	CBX5	q12	257.85	23	33946797	33950790	-1	4	97.4%	68.8%	567	0.36 / 0.3 = 1.2	ortholog_one2one:ENSDARG00000061187_(ENSDARP00000081419 [zgc:158601])	1
1	8687	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	23	p13	q13	ENSP00000341826	ENSP00000341826	HNRPA1	q13	445.25	23	33954708	33956426	1	5	87.4%	69.4%	990	0.03 / 0.15 = 0.2	NOMATCH:ENSDARG00000036675(ENSDARP00000053266 [hnrpa1]);	1
1	8687	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	23	p14	q14	ENSP00000312436	ENSP00000312436	NFE2	q14	212.66	23	33959217	33960940	-1	3	47.2%	62.5%	528	0.7 / 0.69 = 1.01	ortholog_one2one:ENSDARG00000020606_(ENSDARP00000002745 [nfe2])	1
#
##################################################################
#
2	6537	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	23	p1	---	ENSP00000262059	ENSP00000262059	CALCOCO1	noMatch
2	6537	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	23	p2	q1	ENSP00000243056	ENSP00000243056	HOXC13	q1	467.87	23	35287148	35289846	-1	3	91.8%	77.3%	915	0.53 / 0.21 = 2.52	ortholog_one2many:ENSDARG00000070288_(ENSDARP00000093788 [hoxc13a])	1
2	6537	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	23	p3	q2	ENSP00000243103	ENSP00000243103	HOXC12	q2	340.66	23	35277627	35279207	-1	2	100%	65.2%	834	0.49 / 0.08 = 6.13	ortholog_one2many:ENSDARG00000070291_(ENSDARP00000093792 [A2BE68_DANRE])	1
2	6537	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	23	p4	q3	ENSP00000243082	ENSP00000243082	HOXC11	q3	385.72	23	35265648	35267933	-1	2	100%	64.2%	966	0.34 / 0.12 = 2.83	ortholog_one2many:ENSDARG00000070295_(ENSDARP00000093797 [hoxc11a])	1
2	6537	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	23	p5	q4	ENSP00000307321	ENSP00000307321	HOXC10	q4	246.32	23	35256479	35259225	-1	2	94.4%	45.9%	1005	0.57 / 0.62 = 0.92	NOMATCH:ENSDARG00000070298(ENSDARP00000093800 [hoxc10a]);	2
2	6537	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	23	p6	q5	ENSP00000302836	ENSP00000302836	HOXC9	q5	373.4	23	35245633	35247471	-1	2	99.6%	73.2%	780	0.52 / 0.26 = 2	ortholog_one2many:ENSDARG00000070300_(ENSDARP00000093802 [hoxc9a])	1
2	6537	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	23	p7	q6	ENSP00000040584	ENSP00000040584	HOXC8	q6	403.32	23	35239379	35241393	-1	2	100%	82%	750	0.33 / 0.06 = 5.5	ortholog_one2many:ENSDARG00000070302_(ENSDARP00000093804 [hoxc8a])	1
2	6537	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	23	p8	q7	ENSP00000243108	ENSP00000243108	HOXC6	q7	339.25	23	35226124	35227411	-1	2	98.3%	73.1%	696	0.55 / 0.24 = 2.29	ortholog_one2many:ENSDARG00000070305_(ENSDARP00000093809 [hoxc6a])	1
2	6537	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	23	p9	q8	ENSP00000309336	ENSP00000309336	HOXC5	q8	209.71	23	35222629	35224145	-1	2	100%	53.6%	699	0.62 / 0.51 = 1.22	NOMATCH:ENSDARG00000070307(ENSDARP00000093812 [hoxc5a]);	1
2	6537	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	23	p10	q9	ENSP00000305973	ENSP00000305973	HOXC4	q9	351.92	23	35210505	35211828	-1	2	100%	70.1%	804	0.51 / 0.32 = 1.59	ortholog_one2many:ENSDARG00000070308_(ENSDARP00000085719 [hoxc4a])	1
2	6537	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	23	p11	---	ENSP00000338606	ENSP00000338606	SMUG1	noMatch
2	6537	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	23	p12	---	ENSP00000209875	ENSP00000209875	CBX5	noMatch
2	6537	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	23	p13	---	ENSP00000341826	ENSP00000341826	HNRPA1	noMatch
2	6537	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	23	p14	---	ENSP00000312436	ENSP00000312436	NFE2	noMatch
#
##################################################################
#
3	4150	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	11	p1	q1	ENSP00000262059	ENSP00000262059	CALCOCO1	q1	274.78	11	509350	520707	-1	7	53.7%	39.3%	1176	0.89 / 0.79 = 1.13	ortholog_one2many:ENSDARG00000016391_(ENSDARP00000005521 [tceb3])	2
3	4150	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	11	p2	q2	ENSP00000243056	ENSP00000243056	HOXC13	q2	391.12	11	547278	549837	1	3	87.6%	68.7%	867	0.53 / 0.34 = 1.56	ortholog_one2many:ENSDARG00000043871_(ENSDARP00000064412 [hoxc13b])	2
3	4150	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	11	p3	q3	ENSP00000243103	ENSP00000243103	HOXC12	q3	261.11	11	559045	560166	1	2	96.5%	55.1%	816	0.49 / 0.3 = 1.63	ortholog_one2many:ENSDARG00000046043_(ENSDARP00000067695 [hoxc12b])	2
3	4150	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	11	p4	q4	ENSP00000243082	ENSP00000243082	HOXC11	q4	358.97	11	566782	568428	1	2	93.8%	68.7%	858	0.34 / 0.18 = 1.89	ortholog_one2many:ENSDARG00000059401_(ENSDARP00000076949 [hoxc11b])	2
3	4150	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	11	p5	---	ENSP00000307321	ENSP00000307321	HOXC10	noMatch
3	4150	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	11	p6	---	ENSP00000302836	ENSP00000302836	HOXC9	noMatch
3	4150	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	11	p7	---	ENSP00000040584	ENSP00000040584	HOXC8	q5
3	4150	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	11	p8	q5	ENSP00000243108	ENSP00000243108	HOXC6	q5	325.53	11	589745	590852	1	2	98.7%	72.6%	702	0.55 / 0.27 = 2.04	ortholog_one2many:ENSDARG00000046045_(ENSDARP00000067697 [hoxc6b])	2
3	4150	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	11	p9	---	ENSP00000309336	ENSP00000309336	HOXC5	q5
3	4150	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	11	p10	---	ENSP00000305973	ENSP00000305973	HOXC4	q5
3	4150	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	11	p11	q6	ENSP00000338606	ENSP00000338606	SMUG1	q6	313.2	11	604600	606878	-1	2	90%	63.9%	732	0.73 / 0.39 = 1.87	ortholog_one2one:ENSDARG00000063611_(ENSDARP00000087555 [Q0P412_DANRE])	1
3	4150	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	11	p12	---	ENSP00000209875	ENSP00000209875	CBX5	noMatch
3	4150	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	11	p13	q7	ENSP00000341826	ENSP00000341826	HNRPA1	q7	241.88	11	1252244	1255217	1	3	44.1%	72.6%	492	0.03 / 0.53 = 0.06	ortholog_one2many:ENSDARG00000011020_(ENSDARP00000024594 [zgc:66127])	5
3	4150	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	11	p14	---	ENSP00000312436	ENSP00000312436	NFE2	noMatch
#
##################################################################
#
4	3798	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	9	p1	---	ENSP00000262059	ENSP00000262059	CALCOCO1	noMatch
4	3798	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	9	p2	q1	ENSP00000243056	ENSP00000243056	HOXC13	q1	170.99	9	1971944	1974397	-1	2	62.1%	47.5%	642	0.53 / 0.71 = 0.75	NOMATCH:ENSDARG00000059256(ENSDARP00000076768 [hoxd13a]);	6
4	3798	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	9	p3	q2	ENSP00000243103	ENSP00000243103	HOXC12	q2	185.78	9	1966604	1968848	-1	2	70.9%	49.8%	600	0.49 / 0.5 = 0.98	NOMATCH:ENSDARG00000059263(ENSDARP00000076775 [hoxd12a]);	3
4	3798	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	9	p4	q3	ENSP00000243082	ENSP00000243082	HOXC11	q3	258.64	9	1960574	1962309	-1	2	94.7%	51.2%	879	0.34 / 0.41 = 0.83	NOMATCH:ENSDARG00000059267(ENSDARP00000076780,ENSDARP00000093699,ENSDARP00000075052 [hoxd11a]);	3
4	3798	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	9	p5	q4	ENSP00000307321	ENSP00000307321	HOXC10	q4	262.51	9	1952491	1954123	-1	2	92.7%	49.8%	918	0.57 / 0.59 = 0.97	NOMATCH:ENSDARG00000057859(ENSDARP00000075055 [hoxd10a]);	1
4	3798	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	9	p6	q5	ENSP00000302836	ENSP00000302836	HOXC9	q5	265.33	9	1948806	1949904	-1	2	99.2%	50.2%	855	0.52 / 0.48 = 1.08	NOMATCH:ENSDARG00000059274(ENSDARP00000076790 [hoxd9a]);	2
4	3798	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	9	p7	---	ENSP00000040584	ENSP00000040584	HOXC8	noMatch
4	3798	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	9	p8	---	ENSP00000243108	ENSP00000243108	HOXC6	q6
4	3798	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	9	p9	---	ENSP00000309336	ENSP00000309336	HOXC5	q6
4	3798	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	9	p10	q6	ENSP00000305973	ENSP00000305973	HOXC4	q6	253.01	9	1933948	1934984	-1	2	85.2%	59.3%	669	0.51 / 0.51 = 1	between_species_paralog:ENSDARG00000059276_(ENSDARP00000076791 [hoxd4a])	3
4	3798	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	9	p11	---	ENSP00000338606	ENSP00000338606	SMUG1	noMatch
4	3798	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	9	p12	---	ENSP00000209875	ENSP00000209875	CBX5	noMatch
4	3798	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	9	p13	q7	ENSP00000341826	ENSP00000341826	HNRPA1	q7	396.66	9	1665747	1674145	-1	5	64.2%	81%	723	0.03 / 0.24 = 0.13	NOMATCH:ENSDARG00000059351(ENSDARP00000093709 [zgc:153703],ENSDARP00000076880,ENSDARP00000076883);	2
4	3798	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	9	p14	q8	ENSP00000312436	ENSP00000312436	NFE2	q8	189.52	9	1651108	1652013	1	1	79.1%	41.8%	906	0.7 / 0.72 = 0.97	between_species_paralog:ENSDARG00000042824_(ENSDARP00000062853 [nfe2l2])	3
#
##################################################################
#
5	3108	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	3	p1	---	ENSP00000262059	ENSP00000262059	CALCOCO1	noMatch
5	3108	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	3	p2	q1	ENSP00000243056	ENSP00000243056	HOXC13	q1	263.22	3	23010220	23011494	1	2	82.7%	54.6%	837	0.53 / 0.55 = 0.96	NOMATCH:ENSDARG00000056015(ENSDARP00000072890 [hoxb13a]);	4
5	3108	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	3	p3	---	ENSP00000243103	ENSP00000243103	HOXC12	noMatch
5	3108	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	3	p4	---	ENSP00000243082	ENSP00000243082	HOXC11	noMatch
5	3108	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	3	p5	q2	ENSP00000307321	ENSP00000307321	HOXC10	q2	131.08	3	23026681	23026944	1	1	25.7%	75%	264	0.57 / 0.79 = 0.72	NOMATCH:ENSDARG00000011579(ENSDARP00000016856 [hoxb10a]);	4
5	3108	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	3	p6	q3	ENSP00000302836	ENSP00000302836	HOXC9	q3	228.02	3	23033313	23036559	1	2	69.6%	66.3%	549	0.52 / 0.55 = 0.95	NOMATCH:ENSDARG00000056023(ENSDARP00000007852 [hoxb9a],ENSDARP00000022169 [hoxb9a],ENSDARP00000053292);	3
5	3108	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	3	p7	q4	ENSP00000040584	ENSP00000040584	HOXC8	q4	288.91	3	23044100	23045539	1	2	95.5%	63.5%	687	0.33 / 0.32 = 1.03	between_species_paralog:ENSDARG00000056027_(ENSDARP00000046637 [hoxb8a])	2
5	3108	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	3	p8	q6	ENSP00000243108	ENSP00000243108	HOXC6	q6	191.4	3	23059516	23061226	1	2	88.5%	50.9%	654	0.55 / 0.57 = 0.96	NOMATCH:ENSDARG00000029263(ENSDARP00000072928 [hoxb3a],ENSDARP00000041473 [hoxb3a],ENSDARP00000055579 [hoxb3a]);ENSDARG00000010630(ENSDARP00000002263 [hoxb6a]);	3
5	3108	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	3	p9	q7	ENSP00000309336	ENSP00000309336	HOXC5	q7	185.55	3	23063599	23065002	1	3	98.2%	43.5%	807	0.62 / 0.56 = 1.11	NOMATCH:ENSDARG00000029263(ENSDARP00000072928 [hoxb3a],ENSDARP00000041473 [hoxb3a],ENSDARP00000055579 [hoxb3a]);ENSDARG00000013057(ENSDARP00000004270 [hoxb5a]);	3
5	3108	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	3	p10	q8	ENSP00000305973	ENSP00000305973	HOXC4	q8	268.49	3	23077620	23079288	1	2	95.8%	57.9%	735	0.51 / 0.48 = 1.06	between_species_paralog:ENSDARG00000013533_(ENSDARP00000008458 [hoxb4a])	2
5	3108	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	3	p11	---	ENSP00000338606	ENSP00000338606	SMUG1	noMatch
5	3108	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	3	p12	---	ENSP00000209875	ENSP00000209875	CBX5	noMatch
5	3108	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	3	p13	---	ENSP00000341826	ENSP00000341826	HNRPA1	noMatch
5	3108	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	3	p14	---	ENSP00000312436	ENSP00000312436	NFE2	noMatch
#
##################################################################
#
6	2361	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	19	p1	q1	ENSP00000262059	ENSP00000262059	CALCOCO1	q1	224.89	19	10340251	10358170	-1	5	36.6%	41.9%	762	0.89 / 0.83 = 1.07	between_species_paralog:ENSDARG00000034062_(ENSDARP00000039244)	3
6	2361	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	19	p2	q2	ENSP00000243056	ENSP00000243056	HOXC13	q2	266.04	19	10490790	10491767	1	2	82.7%	54.6%	831	0.53 / 0.55 = 0.96	NOMATCH:ENSDARG00000007609(ENSDARP00000003928 [hoxa13a]);	3
6	2361	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	19	p3	---	ENSP00000243103	ENSP00000243103	HOXC12	noMatch
6	2361	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	19	p4	q3	ENSP00000243082	ENSP00000243082	HOXC11	q3	141.64	19	10498425	10499255	1	1	93.1%	35.3%	831	0.34 / 0.67 = 0.51	NOMATCH:ENSDARG00000009045(ENSDARP00000006348 [hoxa11a]);	5
6	2361	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	19	p5	---	ENSP00000307321	ENSP00000307321	HOXC10	q4
6	2361	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	19	p6	q4	ENSP00000302836	ENSP00000302836	HOXC9	q4	188.24	19	10511297	10512339	1	2	78.1%	52.6%	600	0.52 / 0.63 = 0.83	NOMATCH:ENSDARG00000009461(ENSDARP00000009894 [hoxa9a]);	5
6	2361	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	19	p7	---	ENSP00000040584	ENSP00000040584	HOXC8	q5
6	2361	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	19	p8	---	ENSP00000243108	ENSP00000243108	HOXC6	q5
6	2361	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	19	p9	q5	ENSP00000309336	ENSP00000309336	HOXC5	q5	188.37	19	10520701	10521966	1	3	98.2%	47.9%	765	0.62 / 0.56 = 1.11	NOMATCH:ENSDARG00000001784(ENSDARP00000023754 [hoxa5a]);	2
6	2361	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	19	p10	q6	ENSP00000305973	ENSP00000305973	HOXC4	q6	247.73	19	10528752	10529933	1	2	95.5%	52.5%	735	0.51 / 0.52 = 0.98	between_species_paralog:ENSDARG00000057724_(ENSDARP00000074915 [hoxa4a])	4
6	2361	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	19	p11	---	ENSP00000338606	ENSP00000338606	SMUG1	noMatch
6	2361	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	19	p12	---	ENSP00000209875	ENSP00000209875	CBX5	noMatch
6	2361	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	19	p13	---	ENSP00000341826	ENSP00000341826	HNRPA1	noMatch
6	2361	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	19	p14	q8	ENSP00000312436	ENSP00000312436	NFE2	q8	128.62	19	10694984	10695640	1	1	59.8%	38.1%	657	0.7 / 0.81 = 0.86	between_species_paralog:ENSDARG00000019810_(ENSDARP00000095134 [nfe2l3])	6
#
##################################################################
#
7	2323	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	16	p1	---	ENSP00000262059	ENSP00000262059	CALCOCO1	noMatch
7	2323	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	16	p2	q1	ENSP00000243056	ENSP00000243056	HOXC13	q1	256.18	16	15984775	15985935	-1	2	77.6%	55.8%	741	0.53 / 0.56 = 0.95	NOMATCH:ENSDARG00000036254(ENSDARP00000052661 [hoxa13b]);	5
7	2323	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	16	p3	---	ENSP00000243103	ENSP00000243103	HOXC12	noMatch
7	2323	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	16	p4	q2	ENSP00000243082	ENSP00000243082	HOXC11	q2	244.56	16	15975493	15977082	-1	2	87.8%	52.7%	807	0.34 / 0.44 = 0.77	NOMATCH:ENSDARG00000007009(ENSDARP00000005174 [hoxa11b]);	4
7	2323	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	16	p5	q3	ENSP00000307321	ENSP00000307321	HOXC10	q3	218.16	16	15969590	15971748	-1	2	70.5%	50.8%	726	0.57 / 0.66 = 0.86	NOMATCH:ENSDARG00000031337(ENSDARP00000046765 [hoxa10b]);	3
7	2323	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	16	p6	q4	ENSP00000302836	ENSP00000302836	HOXC9	q4	195.28	16	15964987	15966531	-1	2	100%	47.1%	774	0.52 / 0.61 = 0.85	NOMATCH:ENSDARG00000056819(ENSDARP00000073839,ENSDARP00000094425 [hoxa9b]);	4
7	2323	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	16	p7	---	ENSP00000040584	ENSP00000040584	HOXC8	q3
7	2323	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	16	p8	---	ENSP00000243108	ENSP00000243108	HOXC6	noMatch
7	2323	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	16	p9	---	ENSP00000309336	ENSP00000309336	HOXC5	noMatch
7	2323	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	16	p10	q5	ENSP00000305973	ENSP00000305973	HOXC4	q5	104.81	16	15953680	15954720	-1	2	43.6%	51.7%	357	0.51 / 0.79 = 0.65	NOMATCH:ENSDARG00000023031(ENSDARP00000023072 [hoxa2b]);	noData
7	2323	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	16	p11	---	ENSP00000338606	ENSP00000338606	SMUG1	noMatch
7	2323	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	16	p12	q6	ENSP00000209875	ENSP00000209875	CBX5	q6	158.93	16	15834923	15841562	1	4	88.5%	46.5%	504	0.36 / 0.57 = 0.63	between_species_paralog:ENSDARG00000040476_(ENSDARP00000059241 [cbx3b])	5
7	2323	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	16	p13	---	ENSP00000341826	ENSP00000341826	HNRPA1	noMatch
7	2323	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	16	p14	---	ENSP00000312436	ENSP00000312436	NFE2	noMatch
#
##################################################################
#
8	1346	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	12	p1	---	ENSP00000262059	ENSP00000262059	CALCOCO1	noMatch
8	1346	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	12	p2	---	ENSP00000243056	ENSP00000243056	HOXC13	noMatch
8	1346	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	12	p3	---	ENSP00000243103	ENSP00000243103	HOXC12	noMatch
8	1346	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	12	p4	---	ENSP00000243082	ENSP00000243082	HOXC11	noMatch
8	1346	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	12	p5	---	ENSP00000307321	ENSP00000307321	HOXC10	noMatch
8	1346	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	12	p6	---	ENSP00000302836	ENSP00000302836	HOXC9	noMatch
8	1346	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	12	p7	q1	ENSP00000040584	ENSP00000040584	HOXC8	q1	236.46	12	26478731	26480927	-1	2	99.6%	53.4%	726	0.33 / 0.45 = 0.73	between_species_paralog:ENSDARG00000054025_(ENSDARP00000070632 [hoxb8b])	3
8	1346	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	12	p8	q2	ENSP00000243108	ENSP00000243108	HOXC6	q2	177.32	12	26470491	26471559	-1	2	86%	49.3%	627	0.55 / 0.6 = 0.92	NOMATCH:ENSDARG00000026513(ENSDARP00000010277 [hoxb6b]);	4
8	1346	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	12	p9	q3	ENSP00000309336	ENSP00000309336	HOXC5	q3	173.94	12	26467745	26468987	-1	3	58.1%	65.2%	414	0.62 / 0.59 = 1.05	NOMATCH:ENSDARG00000054030(ENSDARP00000070639 [hoxb5b]);	4
8	1346	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	12	p10	---	ENSP00000305973	ENSP00000305973	HOXC4	q3
8	1346	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	12	p11	---	ENSP00000338606	ENSP00000338606	SMUG1	noMatch
8	1346	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	12	p12	---	ENSP00000209875	ENSP00000209875	CBX5	noMatch
8	1346	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	12	p13	---	ENSP00000341826	ENSP00000341826	HNRPA1	noMatch
8	1346	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	12	p14	---	ENSP00000312436	ENSP00000312436	NFE2	noMatch
#
##################################################################
#
9	844	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	3	p1	---	ENSP00000262059	ENSP00000262059	CALCOCO1	noMatch
9	844	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	3	p2	---	ENSP00000243056	ENSP00000243056	HOXC13	noMatch
9	844	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	3	p3	---	ENSP00000243103	ENSP00000243103	HOXC12	noMatch
9	844	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	3	p4	---	ENSP00000243082	ENSP00000243082	HOXC11	noMatch
9	844	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	3	p5	---	ENSP00000307321	ENSP00000307321	HOXC10	noMatch
9	844	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	3	p6	---	ENSP00000302836	ENSP00000302836	HOXC9	noMatch
9	844	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	3	p7	---	ENSP00000040584	ENSP00000040584	HOXC8	noMatch
9	844	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	3	p8	---	ENSP00000243108	ENSP00000243108	HOXC6	noMatch
9	844	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	3	p9	---	ENSP00000309336	ENSP00000309336	HOXC5	noMatch
9	844	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	3	p10	---	ENSP00000305973	ENSP00000305973	HOXC4	noMatch
9	844	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	3	p11	---	ENSP00000338606	ENSP00000338606	SMUG1	noMatch
9	844	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	3	p12	q1	ENSP00000209875	ENSP00000209875	CBX5	q1	237.79	3	19879838	19884549	1	4	96.3%	62.2%	537	0.36 / 0.35 = 1.03	between_species_paralog:ENSDARG00000004189_(ENSDARP00000027355 [cbx1])	2
9	844	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	3	p13	---	ENSP00000341826	ENSP00000341826	HNRPA1	noMatch
9	844	HOXC9_ENSG00000180806_3e5.protein.info	Danio_rerio	3	p14	q2	ENSP00000312436	ENSP00000312436	NFE2	q2	189.43	3	19888301	19891446	-1	3	65.4%	42.1%	738	0.7 / 0.72 = 0.97	between_species_paralog:ENSDARG00000030616_(ENSDARP00000094757 [nfe2l1])	4
#
##################################################################
#